1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Mccoy, M.A.
Stavridi, E.S.
Waterman, J.L.F.
Wieczorek, A.
Opella, S.J.
Halezonetis, T.D.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
1
90.00
90.00
90.00
1.000
1.000
1.000
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
S
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
C
N
80
N
C
N
81
N
O
N
82
N
N
N
83
N
O
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
H
N
89
N
H
N
90
N
H
N
91
N
H
N
92
N
H
N
93
N
H
N
94
N
N
N
95
S
C
N
96
N
C
N
97
N
O
N
98
N
C
N
99
N
C
N
100
N
C
N
101
N
O
N
102
N
O
N
103
N
O
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
H
N
110
N
H
N
111
N
H
N
112
N
H
N
113
N
N
N
114
N
C
N
115
N
C
N
116
N
O
N
117
N
O
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
N
N
124
S
C
N
125
N
C
N
126
N
O
N
127
S
C
N
128
N
C
N
129
N
C
N
130
N
C
N
131
N
O
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
H
N
139
N
H
N
140
N
H
N
141
N
H
N
142
N
H
N
143
N
H
N
144
N
H
N
145
N
N
N
146
S
C
N
147
N
C
N
148
N
O
N
149
N
C
N
150
N
C
N
151
N
C
N
152
N
C
N
153
N
O
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
H
N
159
N
H
N
160
N
H
N
161
N
H
N
162
N
H
N
163
N
H
N
164
N
H
N
165
N
H
N
166
N
H
N
167
N
N
N
168
S
C
N
169
N
C
N
170
N
O
N
171
N
C
N
172
N
C
N
173
N
C
N
174
N
C
N
175
N
N
N
176
N
O
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
H
N
184
N
H
N
185
N
H
N
186
N
H
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
H
N
192
N
N
N
193
S
C
N
194
N
C
N
195
N
O
N
196
N
C
Y
197
N
C
Y
198
N
C
Y
199
N
C
Y
200
N
C
Y
201
N
C
Y
202
N
C
N
203
N
O
N
204
N
H
N
205
N
H
N
206
N
H
N
207
N
H
N
208
N
H
N
209
N
H
N
210
N
H
N
211
N
H
N
212
N
H
N
213
N
H
N
214
N
H
N
215
N
N
N
216
S
C
N
217
N
C
N
218
N
O
N
219
R
C
N
220
N
O
N
221
N
C
N
222
N
O
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
N
N
233
S
C
N
234
N
C
N
235
N
O
N
236
N
C
Y
237
N
C
Y
238
N
C
Y
239
N
C
Y
240
N
C
Y
241
N
C
Y
242
N
C
N
243
N
O
N
244
N
O
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
H
N
253
N
H
N
254
N
H
N
255
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
doub
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
doub
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
doub
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
doub
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
doub
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
doub
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
doub
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
doub
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
Y
193
N
doub
Y
194
N
sing
Y
195
N
sing
N
196
N
sing
Y
197
N
doub
N
198
N
sing
Y
199
N
doub
N
200
N
sing
Y
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
doub
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
doub
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
Y
232
N
doub
Y
233
N
sing
Y
234
N
sing
N
235
N
sing
Y
236
N
doub
N
237
N
sing
Y
238
N
doub
N
239
N
sing
Y
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
UK
EMBO J.
EMJODG
0897
0261-4189
16
6230
6236
10.1093/emboj/16.20.6230
9321402
Hydrophobic side-chain size is a determinant of the three-dimensional structure of the p53 oligomerization domain.
1997
10.2210/pdb1a1u/pdb
pdb_00001a1u
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
4210.639
P53
OLIGOMERIZATION
M40K, F41I, L44Y
2
man
polymer
no
no
DGEYFTLQIRGRERFEKIREYNEALELKDAQAGKE
DGEYFTLQIRGRERFEKIREYNEALELKDAQAGKE
A,C
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
human
Homo
Escherichia
sample
P53 TUMOR SUPPRESSOR
9606
Homo sapiens
562
Escherichia coli
database_2
pdbx_database_status
pdbx_struct_assembly
pdbx_struct_oper_list
struct_sheet
chem_comp_atom
chem_comp_bond
repository
Initial release
Version format compliance
Version format compliance
Database references
Derived calculations
Other
Data collection
1
0
1998-04-08
1
1
2008-03-24
1
2
2011-07-13
1
3
2022-02-16
1
4
2024-05-22
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_database_status.process_site
_struct_sheet.number_strands
Y
BNL
1997-12-16
REL
NO VIOLATIONS
40
1
HNCA
HNCOCA
CBCACONH
HNCACB
3D 15N-EDITED TOCSY-HMQC
3D 15N-EDITED NOESY-HMQC
HCCH-TOCSY
2D NOESY 2D COSY
2D TOCSY
3D 13C-EDITED NOESY
3D 13C-EDITED
13C-FILTERED HMQC-NOESY
HNHA
HMQC-J
HNCA-J
7.0
313
K
DETAILS CAN BE FOUND IN EMBO J., 16, 6230-6236 (1997).
DG-SA
BRUNGER
refinement
X-PLOR
structure solution
X-PLOR
600
Bruker
DMX600
750
Bruker
DMX750
n
1
24
A
n
2
25
A
GLU
26
n
3
GLU
26
A
TYR
27
n
4
TYR
27
A
PHE
28
n
5
PHE
28
A
THR
29
n
6
THR
29
A
LEU
30
n
7
LEU
30
A
GLN
31
n
8
GLN
31
A
ILE
32
n
9
ILE
32
A
ARG
33
n
10
ARG
33
A
GLY
34
n
11
GLY
34
A
ARG
35
n
12
ARG
35
A
GLU
36
n
13
GLU
36
A
ARG
37
n
14
ARG
37
A
PHE
38
n
15
PHE
38
A
GLU
39
n
16
GLU
39
A
LYS
40
n
17
LYS
40
A
ILE
41
n
18
ILE
41
A
ARG
42
n
19
ARG
42
A
GLU
43
n
20
GLU
43
A
TYR
44
n
21
TYR
44
A
ASN
45
n
22
ASN
45
A
GLU
46
n
23
GLU
46
A
ALA
47
n
24
ALA
47
A
LEU
48
n
25
LEU
48
A
GLU
49
n
26
GLU
49
A
LEU
50
n
27
LEU
50
A
LYS
51
n
28
LYS
51
A
ASP
52
n
29
ASP
52
A
ALA
53
n
30
ALA
53
A
GLN
54
n
31
GLN
54
A
n
32
55
A
n
33
56
A
n
34
57
A
n
35
58
A
n
1
24
C
n
2
25
C
GLU
26
n
3
GLU
26
C
TYR
27
n
4
TYR
27
C
PHE
28
n
5
PHE
28
C
THR
29
n
6
THR
29
C
LEU
30
n
7
LEU
30
C
GLN
31
n
8
GLN
31
C
ILE
32
n
9
ILE
32
C
ARG
33
n
10
ARG
33
C
GLY
34
n
11
GLY
34
C
ARG
35
n
12
ARG
35
C
GLU
36
n
13
GLU
36
C
ARG
37
n
14
ARG
37
C
PHE
38
n
15
PHE
38
C
GLU
39
n
16
GLU
39
C
LYS
40
n
17
LYS
40
C
ILE
41
n
18
ILE
41
C
ARG
42
n
19
ARG
42
C
GLU
43
n
20
GLU
43
C
TYR
44
n
21
TYR
44
C
ASN
45
n
22
ASN
45
C
GLU
46
n
23
GLU
46
C
ALA
47
n
24
ALA
47
C
LEU
48
n
25
LEU
48
C
GLU
49
n
26
GLU
49
C
LEU
50
n
27
LEU
50
C
LYS
51
n
28
LYS
51
C
ASP
52
n
29
ASP
52
C
ALA
53
n
30
ALA
53
C
GLN
54
n
31
GLN
54
C
n
32
55
C
n
33
56
C
n
34
57
C
n
35
58
C
author_defined_assembly
2
dimeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1
A
ASP
24
A
ASP
1
1
Y
1
A
GLY
25
A
GLY
2
1
Y
1
A
ALA
55
A
ALA
32
1
Y
1
A
GLY
56
A
GLY
33
1
Y
1
A
LYS
57
A
LYS
34
1
Y
1
A
GLU
58
A
GLU
35
1
Y
1
C
ASP
24
B
ASP
1
1
Y
1
C
GLY
25
B
GLY
2
1
Y
1
C
ALA
55
B
ALA
32
1
Y
1
C
GLY
56
B
GLY
33
1
Y
1
C
LYS
57
B
LYS
34
1
Y
1
C
GLU
58
B
GLU
35
1
Y
1
A
C
HG1
HG1
THR
THR
29
29
1.35
1
A
TYR
27
-73.06
-75.29
1
A
ILE
32
-126.69
-70.56
1
A
ARG
33
88.84
92.44
1
A
ALA
53
-87.04
-87.30
1
C
TYR
27
-74.66
-75.64
1
C
ILE
32
-128.13
-69.67
1
C
ARG
33
88.15
94.28
1
C
ALA
53
-85.72
-86.22
model building
X-PLOR
refinement
X-PLOR
phasing
X-PLOR
SOLUTION STRUCTURE DETERMINATION OF A P53 MUTANT DIMERIZATION DOMAIN, NMR, MINIMIZED AVERAGE STRUCTURE
1
N
N
1
N
N
A
ARG
35
A
ARG
12
HELX_P
A
ASP
52
A
ASP
29
1
1
18
C
ARG
35
B
ARG
12
HELX_P
C
ASP
52
B
ASP
29
1
2
18
ANTI-ONCOGENE
P53, OLIGOMERIZATION DOMAIN, HUMAN, ANTI-ONCOGENE
P53_HUMAN
UNP
1
324
P04637
324
358
1A1U
24
58
P04637
A
1
1
35
324
358
1A1U
24
58
P04637
C
1
1
35
1
A
THR
29
A
THR
6
A
GLN
31
A
GLN
8
1
P 1