1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 Messias, A.C. Kastrau, D.H.K. Costa, H.S. Legall, J. Turner, D.L. Santos, H. Xavier, A.V. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 1 90.00 90.00 90.00 1.000 1.000 1.000 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C34 H34 Fe N4 O4 618.503 HEME C non-polymer C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking UK J.Mol.Biol. JMOBAK 0070 0022-2836 281 719 739 10.1006/jmbi.1998.1974 9710542 Solution structure of Desulfovibrio vulgaris (Hildenborough) ferrocytochrome c3: structural basis for functional cooperativity. 1998 To be Published 0353 Refinement of the Three-Dimensional Structures of Cytochromes C3 from Desulfovibrio Vulgaris Hildenborough at 1.67 A Resolution and from Desulfovibrio Desulfuricans Atcc27774 at 1.6 A Resolution GW J.Biol.Inorg.Chem. JJBCFA 2154 0949-8257 2 488 Redox-Bohr Effect in Electron/Proton Energy Transduction: Cytochrome C3 Coupled to Hydrogenase Works as a 'Proton Thruster' in Desulfovibrio Vulgaris 1997 IX Eur.J.Biochem. EJBCAI 0262 0014-2956 241 723 NMR Studies of Cooperativity in the Tetrahaem Cytochrome C3 from Desulfovibrio Vulgaris 1996 10.2210/pdb1a2i/pdb pdb_00001a2i 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 CLASS III OF C-TYPE CYTOCHROMES, FULLY REDUCED FORM 11687.463 CYTOCHROME C3 1 nat polymer 618.503 HEME C 4 syn non-polymer TETRAHEME CYTOCHROME no no APKAPADGLKMEATKQPVVFNHSTHKSVKCGDCHHPVNGKEDYRKCGTAGCHDSMDKKDKSAKGYYHVMHDKNTKFKSCV GCHVEVAGADAAKKKDLTGCKKSKCHE APKAPADGLKMEATKQPVVFNHSTHKSVKCGDCHHPVNGKEDYRKCGTAGCHDSMDKKDKSAKGYYHVMHDKNTKFKSCV GCHVEVAGADAAKKKDLTGCKKSKCHE A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Desulfovibrio sample PERIPLASM 882 Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough Desulfovibrio vulgaris HILDENBOROUGH database_2 pdbx_database_status pdbx_struct_assembly pdbx_struct_conn_angle pdbx_struct_oper_list struct_conn struct_conn_type struct_site repository Initial release Version format compliance Version format compliance Database references Derived calculations Other 1 0 1998-07-08 1 1 2008-03-24 1 2 2011-07-13 1 3 2022-02-16 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_database_status.process_site _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.value _struct_conn.conn_type_id _struct_conn.id _struct_conn.pdbx_dist_value _struct_conn.pdbx_leaving_atom_flag _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn_type.id _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id Y BNL 1998-01-05 REL REL HEC HEME C LEAST RESTRAINT VIOLATION 600 20 2D-1H-NOESY 2D-1H-TOCSY 2D-1H-COSY 8.5 303 K REFINEMENT DETAILS CAN BE FOUND IN THE JRNL CITATION ABOVE. RESTRAINED MOLECULAR DYNAMICS WITH SIMULATED ANNEALING GUNTERT,WUTHRICH refinement DYANA 1.4 structure solution DYANA 500 Bruker AMX500 HEC 108 2 HEC HEC 108 A HEC 109 2 HEC HEC 109 A HEC 110 2 HEC HEC 110 A HEC 111 2 HEC HEC 111 A ALA 1 n 1 ALA 1 A PRO 2 n 2 PRO 2 A LYS 3 n 3 LYS 3 A ALA 4 n 4 ALA 4 A PRO 5 n 5 PRO 5 A ALA 6 n 6 ALA 6 A ASP 7 n 7 ASP 7 A GLY 8 n 8 GLY 8 A LEU 9 n 9 LEU 9 A LYS 10 n 10 LYS 10 A MET 11 n 11 MET 11 A GLU 12 n 12 GLU 12 A ALA 13 n 13 ALA 13 A THR 14 n 14 THR 14 A LYS 15 n 15 LYS 15 A GLN 16 n 16 GLN 16 A PRO 17 n 17 PRO 17 A VAL 18 n 18 VAL 18 A VAL 19 n 19 VAL 19 A PHE 20 n 20 PHE 20 A ASN 21 n 21 ASN 21 A HIS 22 n 22 HIS 22 A SER 23 n 23 SER 23 A THR 24 n 24 THR 24 A HIS 25 n 25 HIS 25 A LYS 26 n 26 LYS 26 A SER 27 n 27 SER 27 A VAL 28 n 28 VAL 28 A LYS 29 n 29 LYS 29 A CYS 30 n 30 CYS 30 A GLY 31 n 31 GLY 31 A ASP 32 n 32 ASP 32 A CYS 33 n 33 CYS 33 A HIS 34 n 34 HIS 34 A HIS 35 n 35 HIS 35 A PRO 36 n 36 PRO 36 A VAL 37 n 37 VAL 37 A ASN 38 n 38 ASN 38 A GLY 39 n 39 GLY 39 A LYS 40 n 40 LYS 40 A GLU 41 n 41 GLU 41 A ASP 42 n 42 ASP 42 A TYR 43 n 43 TYR 43 A ARG 44 n 44 ARG 44 A LYS 45 n 45 LYS 45 A CYS 46 n 46 CYS 46 A GLY 47 n 47 GLY 47 A THR 48 n 48 THR 48 A ALA 49 n 49 ALA 49 A GLY 50 n 50 GLY 50 A CYS 51 n 51 CYS 51 A HIS 52 n 52 HIS 52 A ASP 53 n 53 ASP 53 A SER 54 n 54 SER 54 A MET 55 n 55 MET 55 A ASP 56 n 56 ASP 56 A LYS 57 n 57 LYS 57 A LYS 58 n 58 LYS 58 A ASP 59 n 59 ASP 59 A LYS 60 n 60 LYS 60 A SER 61 n 61 SER 61 A ALA 62 n 62 ALA 62 A LYS 63 n 63 LYS 63 A GLY 64 n 64 GLY 64 A TYR 65 n 65 TYR 65 A TYR 66 n 66 TYR 66 A HIS 67 n 67 HIS 67 A VAL 68 n 68 VAL 68 A MET 69 n 69 MET 69 A HIS 70 n 70 HIS 70 A ASP 71 n 71 ASP 71 A LYS 72 n 72 LYS 72 A ASN 73 n 73 ASN 73 A THR 74 n 74 THR 74 A LYS 75 n 75 LYS 75 A PHE 76 n 76 PHE 76 A LYS 77 n 77 LYS 77 A SER 78 n 78 SER 78 A CYS 79 n 79 CYS 79 A VAL 80 n 80 VAL 80 A GLY 81 n 81 GLY 81 A CYS 82 n 82 CYS 82 A HIS 83 n 83 HIS 83 A VAL 84 n 84 VAL 84 A GLU 85 n 85 GLU 85 A VAL 86 n 86 VAL 86 A ALA 87 n 87 ALA 87 A GLY 88 n 88 GLY 88 A ALA 89 n 89 ALA 89 A ASP 90 n 90 ASP 90 A ALA 91 n 91 ALA 91 A ALA 92 n 92 ALA 92 A LYS 93 n 93 LYS 93 A LYS 94 n 94 LYS 94 A LYS 95 n 95 LYS 95 A ASP 96 n 96 ASP 96 A LEU 97 n 97 LEU 97 A THR 98 n 98 THR 98 A GLY 99 n 99 GLY 99 A CYS 100 n 100 CYS 100 A LYS 101 n 101 LYS 101 A LYS 102 n 102 LYS 102 A SER 103 n 103 SER 103 A LYS 104 n 104 LYS 104 A CYS 105 n 105 CYS 105 A HIS 106 n 106 HIS 106 A GLU 107 n 107 GLU 107 A author_defined_assembly 1 monomeric A HIS 22 A NE2 HIS 22 1_555 A HEC 108 B FE HEC 1_555 A HEC 108 B NA HEC 1_555 90.5 A HIS 22 A NE2 HIS 22 1_555 A HEC 108 B FE HEC 1_555 A HEC 108 B NB HEC 1_555 90.2 A HEC 108 B NA HEC 1_555 A HEC 108 B FE HEC 1_555 A HEC 108 B NB HEC 1_555 89.8 A HIS 22 A NE2 HIS 22 1_555 A HEC 108 B FE HEC 1_555 A HEC 108 B NC HEC 1_555 89.0 A HEC 108 B NA HEC 1_555 A HEC 108 B FE HEC 1_555 A HEC 108 B NC HEC 1_555 179.4 A HEC 108 B NB HEC 1_555 A HEC 108 B FE HEC 1_555 A HEC 108 B NC HEC 1_555 90.4 A HIS 22 A NE2 HIS 22 1_555 A HEC 108 B FE HEC 1_555 A HEC 108 B ND HEC 1_555 90.4 A HEC 108 B NA HEC 1_555 A HEC 108 B FE HEC 1_555 A HEC 108 B ND HEC 1_555 90.1 A HEC 108 B NB HEC 1_555 A HEC 108 B FE HEC 1_555 A HEC 108 B ND HEC 1_555 179.4 A HEC 108 B NC HEC 1_555 A HEC 108 B FE HEC 1_555 A HEC 108 B ND HEC 1_555 89.7 A HIS 22 A NE2 HIS 22 1_555 A HEC 108 B FE HEC 1_555 A HIS 34 A NE2 HIS 34 1_555 179.7 A HEC 108 B NA HEC 1_555 A HEC 108 B FE HEC 1_555 A HIS 34 A NE2 HIS 34 1_555 89.6 A HEC 108 B NB HEC 1_555 A HEC 108 B FE HEC 1_555 A HIS 34 A NE2 HIS 34 1_555 90.2 A HEC 108 B NC HEC 1_555 A HEC 108 B FE HEC 1_555 A HIS 34 A NE2 HIS 34 1_555 91.0 A HEC 108 B ND HEC 1_555 A HEC 108 B FE HEC 1_555 A HIS 34 A NE2 HIS 34 1_555 89.2 A HIS 25 A NE2 HIS 25 1_555 A HEC 110 D FE HEC 1_555 A HEC 110 D NA HEC 1_555 91.4 A HIS 25 A NE2 HIS 25 1_555 A HEC 110 D FE HEC 1_555 A HEC 110 D NB HEC 1_555 91.8 A HEC 110 D NA HEC 1_555 A HEC 110 D FE HEC 1_555 A HEC 110 D NB HEC 1_555 89.8 A HIS 25 A NE2 HIS 25 1_555 A HEC 110 D FE HEC 1_555 A HEC 110 D NC HEC 1_555 89.3 A HEC 110 D NA HEC 1_555 A HEC 110 D FE HEC 1_555 A HEC 110 D NC HEC 1_555 179.2 A HEC 110 D NB HEC 1_555 A HEC 110 D FE HEC 1_555 A HEC 110 D NC HEC 1_555 90.2 A HIS 25 A NE2 HIS 25 1_555 A HEC 110 D FE HEC 1_555 A HEC 110 D ND HEC 1_555 87.4 A HEC 110 D NA HEC 1_555 A HEC 110 D FE HEC 1_555 A HEC 110 D ND HEC 1_555 90.0 A HEC 110 D NB HEC 1_555 A HEC 110 D FE HEC 1_555 A HEC 110 D ND HEC 1_555 179.2 A HEC 110 D NC HEC 1_555 A HEC 110 D FE HEC 1_555 A HEC 110 D ND HEC 1_555 89.9 A HIS 25 A NE2 HIS 25 1_555 A HEC 110 D FE HEC 1_555 A HIS 83 A NE2 HIS 83 1_555 177.8 A HEC 110 D NA HEC 1_555 A HEC 110 D FE HEC 1_555 A HIS 83 A NE2 HIS 83 1_555 88.7 A HEC 110 D NB HEC 1_555 A HEC 110 D FE HEC 1_555 A HIS 83 A NE2 HIS 83 1_555 90.4 A HEC 110 D NC HEC 1_555 A HEC 110 D FE HEC 1_555 A HIS 83 A NE2 HIS 83 1_555 90.6 A HEC 110 D ND HEC 1_555 A HEC 110 D FE HEC 1_555 A HIS 83 A NE2 HIS 83 1_555 90.4 A HIS 35 A NE2 HIS 35 1_555 A HEC 109 C FE HEC 1_555 A HEC 109 C NA HEC 1_555 90.6 A HIS 35 A NE2 HIS 35 1_555 A HEC 109 C FE HEC 1_555 A HEC 109 C NB HEC 1_555 90.4 A HEC 109 C NA HEC 1_555 A HEC 109 C FE HEC 1_555 A HEC 109 C NB HEC 1_555 89.6 A HIS 35 A NE2 HIS 35 1_555 A HEC 109 C FE HEC 1_555 A HEC 109 C NC HEC 1_555 88.3 A HEC 109 C NA HEC 1_555 A HEC 109 C FE HEC 1_555 A HEC 109 C NC HEC 1_555 178.8 A HEC 109 C NB HEC 1_555 A HEC 109 C FE HEC 1_555 A HEC 109 C NC HEC 1_555 90.9 A HIS 35 A NE2 HIS 35 1_555 A HEC 109 C FE HEC 1_555 A HEC 109 C ND HEC 1_555 90.7 A HEC 109 C NA HEC 1_555 A HEC 109 C FE HEC 1_555 A HEC 109 C ND HEC 1_555 90.1 A HEC 109 C NB HEC 1_555 A HEC 109 C FE HEC 1_555 A HEC 109 C ND HEC 1_555 178.8 A HEC 109 C NC HEC 1_555 A HEC 109 C FE HEC 1_555 A HEC 109 C ND HEC 1_555 89.5 A HIS 35 A NE2 HIS 35 1_555 A HEC 109 C FE HEC 1_555 A HIS 52 A NE2 HIS 52 1_555 178.5 A HEC 109 C NA HEC 1_555 A HEC 109 C FE HEC 1_555 A HIS 52 A NE2 HIS 52 1_555 90.7 A HEC 109 C NB HEC 1_555 A HEC 109 C FE HEC 1_555 A HIS 52 A NE2 HIS 52 1_555 90.3 A HEC 109 C NC HEC 1_555 A HEC 109 C FE HEC 1_555 A HIS 52 A NE2 HIS 52 1_555 90.4 A HEC 109 C ND HEC 1_555 A HEC 109 C FE HEC 1_555 A HIS 52 A NE2 HIS 52 1_555 88.6 A HIS 70 A NE2 HIS 70 1_555 A HEC 111 E FE HEC 1_555 A HEC 111 E NA HEC 1_555 91.4 A HIS 70 A NE2 HIS 70 1_555 A HEC 111 E FE HEC 1_555 A HEC 111 E NB HEC 1_555 90.4 A HEC 111 E NA HEC 1_555 A HEC 111 E FE HEC 1_555 A HEC 111 E NB HEC 1_555 90.1 A HIS 70 A NE2 HIS 70 1_555 A HEC 111 E FE HEC 1_555 A HEC 111 E NC HEC 1_555 87.2 A HEC 111 E NA HEC 1_555 A HEC 111 E FE HEC 1_555 A HEC 111 E NC HEC 1_555 178.6 A HEC 111 E NB HEC 1_555 A HEC 111 E FE HEC 1_555 A HEC 111 E NC HEC 1_555 90.3 A HIS 70 A NE2 HIS 70 1_555 A HEC 111 E FE HEC 1_555 A HEC 111 E ND HEC 1_555 90.9 A HEC 111 E NA HEC 1_555 A HEC 111 E FE HEC 1_555 A HEC 111 E ND HEC 1_555 89.8 A HEC 111 E NB HEC 1_555 A HEC 111 E FE HEC 1_555 A HEC 111 E ND HEC 1_555 178.7 A HEC 111 E NC HEC 1_555 A HEC 111 E FE HEC 1_555 A HEC 111 E ND HEC 1_555 89.9 A HIS 70 A NE2 HIS 70 1_555 A HEC 111 E FE HEC 1_555 A HIS 106 A NE2 HIS 106 1_555 177.6 A HEC 111 E NA HEC 1_555 A HEC 111 E FE HEC 1_555 A HIS 106 A NE2 HIS 106 1_555 90.9 A HEC 111 E NB HEC 1_555 A HEC 111 E FE HEC 1_555 A HIS 106 A NE2 HIS 106 1_555 90.0 A HEC 111 E NC HEC 1_555 A HEC 111 E FE HEC 1_555 A HIS 106 A NE2 HIS 106 1_555 90.4 A HEC 111 E ND HEC 1_555 A HEC 111 E FE HEC 1_555 A HIS 106 A NE2 HIS 106 1_555 88.7 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A O LEU 9 A O LEU 9 A N PHE 20 A N PHE 20 1 A A HG1 O1D THR HEC 14 111 1.44 1 A A O H HIS ALA 83 87 1.50 1 A A O H VAL VAL 80 84 1.56 2 A A HG1 O2D THR HEC 14 111 1.43 2 A A O H HIS ALA 83 87 1.50 2 A A O H SER CYS 78 82 1.56 2 A A O H VAL VAL 80 84 1.56 2 A A HH O1D TYR HEC 65 111 1.56 3 A A HG1 O1D THR HEC 14 111 1.48 3 A A O H HIS ALA 83 87 1.50 3 A A O H VAL VAL 80 84 1.53 3 A A H O2A LYS HEC 75 109 1.55 3 A A O H SER CYS 78 82 1.58 4 A A O H HIS ALA 83 87 1.47 4 A A O H LYS LEU 93 97 1.48 4 A A O H VAL VAL 80 84 1.54 4 A A H O SER HIS 103 106 1.55 4 A A O H ASP LYS 90 94 1.55 4 A A O H SER CYS 78 82 1.57 5 A A HG1 O1D THR HEC 14 111 1.45 5 A A O H HIS ALA 83 87 1.51 5 A A H O SER HIS 103 106 1.55 5 A A O H VAL VAL 80 84 1.57 5 A A O H SER CYS 78 82 1.59 5 A A O H GLY HIS 64 67 1.60 6 A A HG1 O1D THR HEC 14 111 1.46 6 A A O H VAL VAL 80 84 1.46 6 A A O H HIS ALA 83 87 1.48 6 A A O H ASP LYS 90 94 1.55 6 A A HG1 O THR PHE 74 76 1.58 7 A A HG1 O THR PHE 74 76 1.49 7 A A O H LYS LEU 93 97 1.51 7 A A O H HIS ALA 83 87 1.53 7 A A O H VAL VAL 80 84 1.55 7 A A H O SER HIS 103 106 1.55 7 A A O H GLY HIS 64 67 1.56 7 A A HD1 O HIS LEU 83 97 1.58 8 A A HG1 O2D THR HEC 14 111 1.43 8 A A O H HIS ALA 83 87 1.51 8 A A O H SER CYS 78 82 1.57 8 A A O H VAL VAL 80 84 1.59 9 A A HG1 O2D THR HEC 14 111 1.45 9 A A HG1 O THR PHE 74 76 1.47 9 A A O H HIS ALA 83 87 1.51 9 A A O H VAL VAL 80 84 1.56 9 A A H O2A LYS HEC 75 109 1.56 9 A A O H ASP LYS 90 94 1.56 9 A A O H SER CYS 78 82 1.58 10 A A O H LYS LEU 93 97 1.48 10 A A O H HIS ALA 83 87 1.49 10 A A O H VAL VAL 80 84 1.53 10 A A HG1 O THR PHE 74 76 1.54 10 A A O H SER CYS 78 82 1.55 10 A A O H ASP LYS 90 94 1.57 10 A A HD1 O HIS LEU 83 97 1.57 10 A A O H GLY HIS 64 67 1.59 11 A A O H HIS ALA 83 87 1.49 11 A A H O1A LYS HEC 75 109 1.52 11 A A O H SER CYS 78 82 1.53 11 A A O H VAL VAL 80 84 1.55 12 A A O H LYS LEU 93 97 1.47 12 A A O H HIS ALA 83 87 1.50 12 A A O H ASP LYS 90 94 1.54 12 A A O HG ASP SER 71 78 1.54 12 A A O H SER CYS 78 82 1.55 12 A A O H VAL VAL 80 84 1.55 12 A A HD1 O HIS LEU 83 97 1.57 13 A A O H HIS ALA 83 87 1.51 13 A A H O SER HIS 103 106 1.56 13 A A O H VAL VAL 80 84 1.57 13 A A O H SER CYS 78 82 1.57 14 A A O H HIS ALA 83 87 1.50 14 A A O H VAL VAL 80 84 1.55 14 A A O H SER CYS 78 82 1.56 14 A A O H GLY HIS 64 67 1.58 15 A A HG1 O2D THR HEC 14 111 1.45 15 A A HG1 O THR PHE 74 76 1.49 15 A A O H HIS ALA 83 87 1.50 15 A A O H SER CYS 78 82 1.54 15 A A O H VAL VAL 80 84 1.56 15 A A H O SER HIS 103 106 1.57 15 A A O H LYS LEU 93 97 1.60 16 A A HG1 O2D THR HEC 14 111 1.49 16 A A O H HIS ALA 83 87 1.50 16 A A O H VAL VAL 80 84 1.54 16 A A H O SER HIS 103 106 1.55 16 A A H O MET VAL 11 18 1.57 16 A A O H ASP LYS 90 94 1.57 16 A A O H SER CYS 78 82 1.59 17 A A O H HIS ALA 83 87 1.49 17 A A O H VAL VAL 80 84 1.53 17 A A HG1 O THR PHE 74 76 1.54 17 A A H O2A LYS HEC 75 109 1.59 18 A A HG1 O2D THR HEC 14 111 1.43 18 A A O H HIS ALA 83 87 1.53 18 A A O H SER CYS 78 82 1.55 18 A A O H VAL VAL 80 84 1.56 18 A A H O2A LYS HEC 75 109 1.57 19 A A O H HIS ALA 83 87 1.49 19 A A O H VAL VAL 80 84 1.54 19 A A H O1A LYS HEC 75 109 1.54 19 A A O H SER CYS 78 82 1.55 20 A A O H HIS ALA 83 87 1.50 20 A A O H SER CYS 78 82 1.53 20 A A O HG ASP SER 71 78 1.54 20 A A O H VAL VAL 80 84 1.55 20 A A H O SER HIS 103 106 1.57 20 A A O H GLY HIS 64 67 1.58 1 A LYS 3 47.51 -172.49 1 A GLU 12 -108.19 67.33 1 A HIS 25 -99.23 34.66 1 A ASN 38 82.55 -1.13 1 A ALA 49 -54.92 102.37 1 A CYS 51 -108.74 -92.25 1 A HIS 52 -107.11 74.60 1 A LYS 57 69.64 -64.81 1 A ASP 59 -140.63 -51.15 1 A LYS 60 41.99 90.51 1 A SER 61 -157.87 -54.65 1 A ALA 62 -179.44 -54.48 1 A HIS 70 -132.91 -60.06 1 A ASP 71 -39.00 132.14 1 A ALA 89 -113.13 60.93 1 A ALA 91 61.37 146.01 1 A ALA 92 84.03 -50.41 1 A LYS 102 72.15 46.03 2 A PRO 2 -74.96 -89.65 2 A LYS 3 176.29 157.82 2 A ALA 6 -56.27 -170.56 2 A GLU 12 -108.63 67.21 2 A ASN 38 -98.88 35.03 2 A ALA 49 -54.69 108.74 2 A CYS 51 -105.53 -90.53 2 A HIS 52 -109.55 70.80 2 A ASP 59 -171.91 90.56 2 A SER 61 174.12 -66.94 2 A ALA 62 -176.25 -45.51 2 A HIS 70 -132.49 -61.91 2 A ASP 71 -38.87 132.01 2 A ALA 89 40.25 89.92 2 A ASP 90 -165.05 -43.28 2 A ALA 91 75.20 144.11 2 A ALA 92 84.49 -48.19 2 A LYS 102 74.09 42.51 3 A PRO 2 -74.94 -87.01 3 A LYS 3 172.71 155.82 3 A ALA 6 -54.96 -172.17 3 A GLU 12 -108.84 68.50 3 A HIS 25 -97.55 33.45 3 A ASN 38 -94.82 32.21 3 A ALA 49 -54.83 108.53 3 A CYS 51 -105.51 -91.10 3 A HIS 52 -109.00 69.66 3 A ASP 59 -122.95 -58.09 3 A LYS 60 63.21 -139.60 3 A SER 61 72.16 -71.55 3 A ALA 62 -178.69 -42.51 3 A HIS 70 -132.60 -63.35 3 A ASP 71 -37.84 132.00 3 A ASN 73 -69.47 65.90 3 A ALA 91 82.97 -76.37 3 A LYS 102 70.91 45.32 4 A GLU 12 -102.21 65.71 4 A ASN 38 -97.53 34.63 4 A GLU 41 -107.52 66.19 4 A CYS 51 -103.80 -91.61 4 A HIS 52 -109.07 74.10 4 A LYS 57 69.83 -63.41 4 A ASP 59 -143.30 -47.44 4 A LYS 60 66.00 -119.76 4 A SER 61 63.45 -78.16 4 A ALA 62 -173.96 -40.77 4 A HIS 70 -133.51 -63.17 4 A ASP 71 -38.54 132.38 4 A ALA 89 -109.06 77.18 4 A LYS 102 71.60 49.68 5 A ALA 6 -54.69 -177.77 5 A GLU 12 -110.02 68.19 5 A HIS 25 -98.71 34.11 5 A ASN 38 85.47 -8.46 5 A ALA 49 -54.92 107.99 5 A CYS 51 -106.15 -93.00 5 A HIS 52 -105.95 68.94 5 A SER 61 178.31 -67.59 5 A ALA 62 -177.20 -43.53 5 A HIS 70 -132.62 -62.60 5 A ASP 71 -38.94 119.88 5 A ASN 73 -65.19 79.99 5 A ALA 89 -143.98 58.18 5 A ALA 91 78.88 -76.08 5 A LYS 102 72.53 45.92 6 A ALA 6 -55.82 175.17 6 A GLU 12 -107.64 67.62 6 A HIS 25 -96.68 33.06 6 A ASN 38 87.17 -14.39 6 A ALA 49 -54.82 105.79 6 A CYS 51 -108.22 -93.48 6 A HIS 52 -105.86 66.34 6 A LYS 57 68.27 -67.97 6 A LYS 58 -69.51 63.85 6 A SER 61 177.86 -64.35 6 A ALA 62 -179.59 -46.71 6 A HIS 70 -137.37 -62.97 6 A ASP 71 -37.58 126.81 7 A GLU 12 -105.52 66.59 7 A ASN 38 64.94 -82.95 7 A GLU 41 177.15 61.74 7 A TYR 43 45.06 96.30 7 A CYS 51 -102.53 -94.53 7 A HIS 52 -105.19 69.51 7 A ASP 59 -149.17 -47.82 7 A LYS 60 87.13 -150.12 7 A SER 61 72.80 170.11 7 A HIS 70 -132.49 -63.34 7 A ASP 71 -38.65 142.48 7 A ALA 91 68.32 -74.70 7 A LYS 102 77.07 51.79 8 A PRO 2 -74.98 -169.10 8 A GLU 12 -103.95 65.09 8 A ASN 38 83.56 -3.32 8 A ALA 49 -54.73 105.67 8 A CYS 51 -108.77 -94.41 8 A HIS 52 -105.02 68.13 8 A ASP 56 -116.02 68.98 8 A ASP 59 -160.56 -59.49 8 A LYS 60 62.85 131.17 8 A SER 61 170.27 -66.61 8 A ALA 62 -176.71 -51.51 8 A HIS 70 -134.54 -62.89 8 A ASP 71 -37.93 119.79 8 A ALA 89 -113.37 60.78 8 A ALA 91 61.31 146.72 8 A ALA 92 83.78 -50.70 9 A ALA 6 -55.56 177.64 9 A GLU 12 -110.42 67.33 9 A HIS 25 -97.38 33.49 9 A ALA 49 -54.64 109.53 9 A CYS 51 -104.85 -91.18 9 A HIS 52 -109.17 69.80 9 A ASP 59 -162.18 97.44 9 A SER 61 169.47 -59.14 9 A ALA 62 171.74 -39.65 9 A HIS 70 -136.25 -63.48 9 A ASP 71 -36.38 134.30 9 A ASN 73 -61.93 82.07 9 A LEU 97 -122.89 -52.35 10 A LYS 3 40.07 -158.41 10 A ALA 6 -63.86 -179.14 10 A GLU 12 -101.92 65.75 10 A ASN 38 82.23 -1.68 10 A ALA 49 -55.11 103.47 10 A CYS 51 -109.30 -95.53 10 A HIS 52 -103.53 74.38 10 A LYS 57 69.37 -65.04 10 A ASP 59 -173.70 54.61 10 A LYS 60 -40.12 97.98 10 A HIS 70 -136.70 -62.62 10 A ASP 71 -38.49 140.46 10 A ASN 73 -69.01 66.06 10 A ASP 90 -153.05 89.17 11 A ALA 6 -54.83 -179.44 11 A GLU 12 -105.03 68.55 11 A HIS 35 -39.64 148.07 11 A ASN 38 82.48 -5.56 11 A ALA 49 -54.85 108.25 11 A CYS 51 -105.29 -95.82 11 A HIS 52 -103.78 68.22 11 A ASP 59 -141.27 -56.77 11 A LYS 60 66.08 -145.74 11 A SER 61 84.50 -70.97 11 A ALA 62 -175.71 -46.22 11 A HIS 70 -135.11 -60.74 11 A ASP 71 -37.84 128.87 11 A ALA 89 -98.59 58.28 11 A ALA 91 60.36 150.91 11 A ALA 92 81.92 -52.14 12 A ALA 6 -55.18 -170.36 12 A ASN 38 84.02 -4.61 12 A ALA 49 -54.68 103.54 12 A CYS 51 -108.49 -94.12 12 A HIS 52 -105.35 75.08 12 A LYS 57 70.53 -61.97 12 A ASP 59 -144.26 -52.14 12 A LYS 60 69.27 -119.05 12 A SER 61 65.47 -74.42 12 A ALA 62 -177.47 -41.79 12 A HIS 70 -131.61 -63.02 12 A ASP 71 -38.53 139.49 12 A ASN 73 -69.79 63.00 12 A ALA 89 -100.48 74.78 13 A ALA 6 -54.92 -179.83 13 A ASN 38 82.18 -2.34 13 A ALA 49 -54.64 109.24 13 A CYS 51 -105.15 -90.93 13 A HIS 52 -108.26 63.22 13 A LYS 57 66.44 -74.11 13 A ASP 59 -146.89 -61.97 13 A LYS 60 67.37 124.72 13 A SER 61 175.17 -63.67 13 A ALA 62 -177.94 -52.11 13 A HIS 70 -132.31 -63.11 13 A ASP 71 -37.97 124.96 13 A ASP 90 -156.01 -47.88 13 A ALA 91 73.94 -71.17 13 A LEU 97 -126.59 -50.05 13 A LYS 102 82.07 41.10 14 A PRO 2 -74.97 -77.30 14 A LYS 3 173.28 140.01 14 A ALA 6 -54.83 176.29 14 A GLU 12 -107.35 66.74 14 A HIS 25 -99.26 34.49 14 A VAL 37 -84.53 -72.80 14 A ASN 38 -90.86 38.93 14 A CYS 51 -95.12 -108.33 14 A MET 55 -89.28 35.51 14 A ASP 56 -106.23 59.78 14 A ASP 59 -156.34 -46.56 14 A LYS 60 65.45 100.48 14 A HIS 70 -134.93 -61.74 14 A ASP 71 -38.89 137.92 14 A ASN 73 -69.54 63.77 14 A ALA 91 80.56 -77.63 15 A ALA 6 -54.92 177.13 15 A GLU 12 -103.01 65.00 15 A ASN 38 84.35 -6.97 15 A CYS 51 -95.02 -109.87 15 A MET 55 -88.98 34.59 15 A ASP 56 -116.68 75.40 15 A ASP 59 -173.92 93.31 15 A SER 61 179.38 -61.46 15 A ALA 62 -178.99 -50.36 15 A HIS 70 -135.50 -60.45 15 A ASP 71 -39.42 134.31 15 A ALA 91 80.57 -73.54 16 A LYS 3 55.90 178.80 16 A GLU 12 -105.26 65.96 16 A ASN 38 66.86 -82.13 16 A GLU 41 178.22 78.95 16 A ASP 42 -141.23 46.98 16 A TYR 43 45.51 89.03 16 A ALA 49 -54.70 108.08 16 A CYS 51 -105.58 -91.93 16 A HIS 52 -107.78 65.43 16 A ASP 59 -164.45 88.81 16 A SER 61 174.35 -60.49 16 A ALA 62 177.29 -48.73 16 A HIS 70 -135.44 -63.22 16 A ASP 71 -38.20 131.49 16 A ALA 89 -94.36 46.29 17 A LYS 3 55.69 178.07 17 A ALA 6 -75.78 -166.11 17 A ASN 38 80.18 1.74 17 A ALA 49 -54.80 104.16 17 A CYS 51 -107.54 -100.24 17 A LYS 57 69.62 -63.78 17 A ASP 59 -135.90 -55.60 17 A LYS 60 68.72 -139.22 17 A SER 61 77.68 -70.70 17 A ALA 62 -177.79 -42.26 17 A HIS 70 -131.60 -63.17 17 A ASP 71 -39.38 123.88 17 A ALA 89 40.38 90.04 17 A ASP 90 -164.68 -43.24 17 A ALA 91 76.13 145.31 17 A ALA 92 84.10 -48.34 17 A LYS 102 73.35 40.63 18 A GLU 12 -105.52 66.18 18 A GLU 41 -174.23 104.22 18 A ASP 42 -145.72 48.78 18 A TYR 43 50.03 100.84 18 A ALA 49 -54.78 103.53 18 A CYS 51 -107.74 -101.36 18 A LYS 57 67.17 -76.07 18 A ASP 59 -136.37 -58.17 18 A LYS 60 72.12 -142.12 18 A SER 61 80.47 -64.89 18 A ALA 62 175.20 -44.10 18 A HIS 70 -135.81 -63.22 18 A ASP 71 -38.03 125.07 18 A ALA 91 82.21 -72.58 18 A LYS 102 73.87 40.01 19 A ALA 6 -54.70 171.21 19 A GLU 12 -108.97 68.28 19 A ASN 38 -98.08 34.41 19 A ALA 49 -55.74 109.93 19 A CYS 51 -104.38 -100.92 19 A HIS 52 -100.06 71.79 19 A LYS 57 70.28 -61.11 19 A ASP 59 -172.06 56.49 19 A LYS 60 -40.35 108.32 19 A HIS 70 -133.43 -62.92 19 A ASP 71 -38.72 125.13 19 A ALA 89 -104.34 59.35 19 A ALA 91 60.20 152.38 19 A ALA 92 81.54 -51.86 19 A LYS 102 74.78 49.70 20 A GLU 12 -104.52 67.54 20 A ASN 38 82.76 -0.32 20 A ALA 49 -54.89 107.09 20 A CYS 51 -105.62 -99.19 20 A LYS 57 69.11 -66.25 20 A ASP 59 -163.38 94.94 20 A SER 61 -178.38 -69.62 20 A ALA 62 -174.85 -43.14 20 A HIS 70 -134.51 -62.51 20 A ASP 71 -39.08 133.14 20 A ALA 89 -105.69 60.33 20 A ALA 91 59.59 154.36 20 A ALA 92 79.02 -53.74 20 A LYS 102 77.45 46.07 model building DYANA refinement DYANA SOLUTION STRUCTURE OF DESULFOVIBRIO VULGARIS (HILDENBOROUGH) FERROCYTOCHROME C3, NMR, 20 STRUCTURES 1 Y N 2 N N 2 N N 2 N N 2 N N A LYS 29 A LYS 29 HELX_P A HIS 34 A HIS 34 1 1 6 A GLY 64 A GLY 64 HELX_P A VAL 68 A VAL 68 5 2 5 A SER 78 A SER 78 HELX_P A GLY 88 A GLY 88 1 3 11 A ALA 92 A ALA 92 HELX_P A LYS 94 A LYS 94 1 4 3 covale 1.850 none A CYS 30 A SG CYS 30 1_555 A HEC 108 B CAB HEC 1_555 covale 1.810 none A CYS 33 A SG CYS 33 1_555 A HEC 108 B CAC HEC 1_555 covale 1.825 none A CYS 46 A SG CYS 46 1_555 A HEC 109 C CAB HEC 1_555 covale 1.810 none A CYS 51 A SG CYS 51 1_555 A HEC 109 C CAC HEC 1_555 covale 1.847 none A CYS 79 A SG CYS 79 1_555 A HEC 110 D CAB HEC 1_555 covale 1.810 none A CYS 82 A SG CYS 82 1_555 A HEC 110 D CAC HEC 1_555 covale 1.866 none A CYS 100 A SG CYS 100 1_555 A HEC 111 E CAB HEC 1_555 covale 1.809 none A CYS 105 A SG CYS 105 1_555 A HEC 111 E CAC HEC 1_555 metalc 1.934 A HIS 22 A NE2 HIS 22 1_555 A HEC 108 B FE HEC 1_555 metalc 1.905 A HIS 25 A NE2 HIS 25 1_555 A HEC 110 D FE HEC 1_555 metalc 1.936 A HIS 34 A NE2 HIS 34 1_555 A HEC 108 B FE HEC 1_555 metalc 1.927 A HIS 35 A NE2 HIS 35 1_555 A HEC 109 C FE HEC 1_555 metalc 1.929 A HIS 52 A NE2 HIS 52 1_555 A HEC 109 C FE HEC 1_555 metalc 1.919 A HIS 70 A NE2 HIS 70 1_555 A HEC 111 E FE HEC 1_555 metalc 1.943 A HIS 83 A NE2 HIS 83 1_555 A HEC 110 D FE HEC 1_555 metalc 1.933 A HIS 106 A NE2 HIS 106 1_555 A HEC 111 E FE HEC 1_555 ELECTRON TRANSPORT ELECTRON TRANSPORT, HEMEPROTEIN, ELECTRON TRANSFER, REDOX-BOHR EFFECT, COOPERATIVITY, ENERGY TRANSDUCTION CYC3_DESVH UNP 1 1 P00131 MRKLFFCGVLALAVAFALPVVAAPKAPADGLKMEATKQPVVFNHSTHKSVKCGDCHHPVNGKEDYRKCGTAGCHDSMDKK DKSAKGYYHVMHDKNTKFKSCVGCHVEVAGADAAKKKDLTGCKKSKCHE 23 129 1A2I 1 107 P00131 A 1 1 107 2 anti-parallel A LEU 9 A LEU 9 A MET 11 A MET 11 A VAL 18 A VAL 18 A PHE 20 A PHE 20 BINDING SITE FOR RESIDUE HEC A 108 A HEC 108 Software 19 BINDING SITE FOR RESIDUE HEC A 109 A HEC 109 Software 15 BINDING SITE FOR RESIDUE HEC A 110 A HEC 110 Software 13 BINDING SITE FOR RESIDUE HEC A 111 A HEC 111 Software 16 A LYS 3 A LYS 3 19 1_555 A ALA 4 A ALA 4 19 1_555 A PRO 5 A PRO 5 19 1_555 A LEU 9 A LEU 9 19 1_555 A MET 11 A MET 11 19 1_555 A PHE 20 A PHE 20 19 1_555 A HIS 22 A HIS 22 19 1_555 A HIS 25 A HIS 25 19 1_555 A VAL 28 A VAL 28 19 1_555 A LYS 29 A LYS 29 19 1_555 A CYS 30 A CYS 30 19 1_555 A CYS 33 A CYS 33 19 1_555 A HIS 34 A HIS 34 19 1_555 A TYR 43 A TYR 43 19 1_555 A ARG 44 A ARG 44 19 1_555 A LYS 45 A LYS 45 19 1_555 A CYS 46 A CYS 46 19 1_555 A HEC 109 C HEC 19 1_555 A HEC 110 D HEC 19 1_555 A CYS 33 A CYS 33 15 1_555 A HIS 35 A HIS 35 15 1_555 A LYS 45 A LYS 45 15 1_555 A CYS 46 A CYS 46 15 1_555 A CYS 51 A CYS 51 15 1_555 A HIS 52 A HIS 52 15 1_555 A SER 61 A SER 61 15 1_555 A ALA 62 A ALA 62 15 1_555 A HIS 67 A HIS 67 15 1_555 A VAL 68 A VAL 68 15 1_555 A ASN 73 A ASN 73 15 1_555 A THR 74 A THR 74 15 1_555 A LYS 75 A LYS 75 15 1_555 A PHE 76 A PHE 76 15 1_555 A HEC 108 B HEC 15 1_555 A PHE 20 A PHE 20 13 1_555 A THR 24 A THR 24 13 1_555 A HIS 25 A HIS 25 13 1_555 A ASP 32 A ASP 32 13 1_555 A CYS 33 A CYS 33 13 1_555 A LYS 77 A LYS 77 13 1_555 A CYS 79 A CYS 79 13 1_555 A CYS 82 A CYS 82 13 1_555 A HIS 83 A HIS 83 13 1_555 A VAL 86 A VAL 86 13 1_555 A LEU 97 A LEU 97 13 1_555 A LYS 104 A LYS 104 13 1_555 A HEC 108 B HEC 13 1_555 A MET 11 A MET 11 16 1_555 A ALA 13 A ALA 13 16 1_555 A THR 14 A THR 14 16 1_555 A GLN 16 A GLN 16 16 1_555 A VAL 18 A VAL 18 16 1_555 A TYR 65 A TYR 65 16 1_555 A TYR 66 A TYR 66 16 1_555 A HIS 70 A HIS 70 16 1_555 A VAL 80 A VAL 80 16 1_555 A HIS 83 A HIS 83 16 1_555 A LEU 97 A LEU 97 16 1_555 A THR 98 A THR 98 16 1_555 A GLY 99 A GLY 99 16 1_555 A CYS 100 A CYS 100 16 1_555 A CYS 105 A CYS 105 16 1_555 A HIS 106 A HIS 106 16 1_555 1 P 1