0.017699
0.000000
0.003505
0.000000
0.008446
0.000000
0.000000
0.000000
0.014258
0.00000
0.00000
0.00000
Stewart, L.
Redinbo, M.R.
Qiu, X.
Champoux, J.J.
Hol, W.G.J.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
2
90.00
101.20
90.00
56.500
118.400
71.500
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C10 H14 N5 O6 P
331.222
y
2'-DEOXYADENOSINE-5'-MONOPHOSPHATE
DNA linking
C9 H14 N3 O7 P
307.197
y
2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE
DNA linking
C10 H14 N5 O7 P
347.221
y
2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE
DNA linking
C10 H15 N2 O8 P
322.208
y
THYMIDINE-5'-MONOPHOSPHATE
DNA linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
O
N
89
N
P
N
90
N
O
N
91
N
O
N
92
N
O
N
93
N
C
N
94
R
C
N
95
N
O
N
96
S
C
N
97
N
O
N
98
N
C
N
99
R
C
Y
100
N
N
Y
101
N
C
Y
102
N
N
Y
103
N
C
Y
104
N
C
N
105
N
N
Y
106
N
N
Y
107
N
C
Y
108
N
N
Y
109
N
C
N
110
N
H
N
111
N
H
N
112
N
H
N
113
N
H
N
114
N
H
N
115
N
H
N
116
N
H
N
117
N
H
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
O
N
125
N
P
N
126
N
O
N
127
N
O
N
128
N
O
N
129
N
C
N
130
R
C
N
131
N
O
N
132
S
C
N
133
N
O
N
134
N
C
N
135
R
C
N
136
N
N
N
137
N
C
N
138
N
O
N
139
N
N
N
140
N
C
N
141
N
N
N
142
N
C
N
143
N
C
N
144
N
H
N
145
N
H
N
146
N
H
N
147
N
H
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
O
N
159
N
P
N
160
N
O
N
161
N
O
N
162
N
O
N
163
N
C
N
164
R
C
N
165
N
O
N
166
S
C
N
167
N
O
N
168
N
C
N
169
R
C
Y
170
N
N
Y
171
N
C
Y
172
N
N
Y
173
N
C
N
174
N
C
N
175
N
O
N
176
N
N
N
177
N
C
N
178
N
N
N
179
N
N
Y
180
N
C
N
181
N
H
N
182
N
H
N
183
N
H
N
184
N
H
N
185
N
H
N
186
N
H
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
H
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
O
N
196
N
P
N
197
N
O
N
198
N
O
N
199
N
O
N
200
N
C
N
201
R
C
N
202
N
O
N
203
S
C
N
204
N
O
N
205
N
C
N
206
R
C
N
207
N
N
N
208
N
C
N
209
N
O
N
210
N
N
N
211
N
C
N
212
N
O
N
213
N
C
N
214
N
C
N
215
N
C
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
N
N
232
S
C
N
233
N
C
N
234
N
O
N
235
N
C
N
236
N
C
N
237
N
C
N
238
N
O
N
239
N
N
N
240
N
O
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
N
N
252
S
C
N
253
N
C
N
254
N
O
N
255
N
C
N
256
N
C
N
257
N
C
N
258
N
O
N
259
N
O
N
260
N
O
N
261
N
H
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
N
N
271
N
C
N
272
N
C
N
273
N
O
N
274
N
O
N
275
N
H
N
276
N
H
N
277
N
H
N
278
N
H
N
279
N
H
N
280
N
N
N
281
S
C
N
282
N
C
N
283
N
O
N
284
N
C
Y
285
N
C
Y
286
N
N
Y
287
N
C
Y
288
N
C
Y
289
N
N
N
290
N
O
N
291
N
H
N
292
N
H
N
293
N
H
N
294
N
H
N
295
N
H
N
296
N
H
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
O
N
302
N
H
N
303
N
H
N
304
N
N
N
305
S
C
N
306
N
C
N
307
N
O
N
308
S
C
N
309
N
C
N
310
N
C
N
311
N
C
N
312
N
O
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
H
N
322
N
H
N
323
N
H
N
324
N
H
N
325
N
H
N
326
N
N
N
327
S
C
N
328
N
C
N
329
N
O
N
330
N
C
N
331
N
C
N
332
N
C
N
333
N
C
N
334
N
O
N
335
N
H
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
N
N
349
S
C
N
350
N
C
N
351
N
O
N
352
N
C
N
353
N
C
N
354
N
C
N
355
N
C
N
356
N
N
N
357
N
O
N
358
N
H
N
359
N
H
N
360
N
H
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
H
N
373
N
N
N
374
S
C
N
375
N
C
N
376
N
O
N
377
N
C
N
378
N
C
N
379
N
S
N
380
N
C
N
381
N
O
N
382
N
H
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
H
N
391
N
H
N
392
N
H
N
393
N
N
N
394
S
C
N
395
N
C
N
396
N
O
N
397
N
C
Y
398
N
C
Y
399
N
C
Y
400
N
C
Y
401
N
C
Y
402
N
C
Y
403
N
C
N
404
N
O
N
405
N
H
N
406
N
H
N
407
N
H
N
408
N
H
N
409
N
H
N
410
N
H
N
411
N
H
N
412
N
H
N
413
N
H
N
414
N
H
N
415
N
H
N
416
N
N
N
417
S
C
N
418
N
C
N
419
N
O
N
420
N
C
N
421
N
C
N
422
N
C
N
423
N
O
N
424
N
H
N
425
N
H
N
426
N
H
N
427
N
H
N
428
N
H
N
429
N
H
N
430
N
H
N
431
N
H
N
432
N
H
N
433
N
N
N
434
S
C
N
435
N
C
N
436
N
O
N
437
N
C
N
438
N
O
N
439
N
O
N
440
N
H
N
441
N
H
N
442
N
H
N
443
N
H
N
444
N
H
N
445
N
H
N
446
N
H
N
447
N
N
N
448
S
C
N
449
N
C
N
450
N
O
N
451
R
C
N
452
N
O
N
453
N
C
N
454
N
O
N
455
N
H
N
456
N
H
N
457
N
H
N
458
N
H
N
459
N
H
N
460
N
H
N
461
N
H
N
462
N
H
N
463
N
H
N
464
N
N
N
465
S
C
N
466
N
C
N
467
N
O
N
468
N
C
Y
469
N
C
Y
470
N
C
Y
471
N
C
Y
472
N
N
Y
473
N
C
Y
474
N
C
Y
475
N
C
Y
476
N
C
Y
477
N
C
N
478
N
O
N
479
N
H
N
480
N
H
N
481
N
H
N
482
N
H
N
483
N
H
N
484
N
H
N
485
N
H
N
486
N
H
N
487
N
H
N
488
N
H
N
489
N
H
N
490
N
H
N
491
N
N
N
492
S
C
N
493
N
C
N
494
N
O
N
495
N
C
Y
496
N
C
Y
497
N
C
Y
498
N
C
Y
499
N
C
Y
500
N
C
Y
501
N
C
N
502
N
O
N
503
N
O
N
504
N
H
N
505
N
H
N
506
N
H
N
507
N
H
N
508
N
H
N
509
N
H
N
510
N
H
N
511
N
H
N
512
N
H
N
513
N
H
N
514
N
H
N
515
N
N
N
516
S
C
N
517
N
C
N
518
N
O
N
519
N
C
N
520
N
C
N
521
N
C
N
522
N
O
N
523
N
H
N
524
N
H
N
525
N
H
N
526
N
H
N
527
N
H
N
528
N
H
N
529
N
H
N
530
N
H
N
531
N
H
N
532
N
H
N
533
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
doub
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
Y
106
N
sing
Y
107
N
sing
Y
108
N
doub
N
109
N
sing
Y
110
N
sing
Y
111
N
sing
Y
112
N
doub
N
113
N
sing
Y
114
N
doub
N
115
N
sing
N
116
N
sing
Y
117
N
sing
Y
118
N
doub
N
119
N
sing
Y
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
doub
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
doub
N
147
N
sing
N
148
N
doub
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
doub
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
doub
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
Y
179
N
sing
Y
180
N
sing
Y
181
N
doub
N
182
N
sing
Y
183
N
sing
N
184
N
sing
Y
185
N
doub
N
186
N
doub
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
doub
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
doub
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
doub
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
doub
N
225
N
sing
N
226
N
sing
N
227
N
doub
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
doub
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
doub
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
doub
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
doub
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
doub
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
doub
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
Y
289
N
sing
Y
290
N
doub
Y
291
N
doub
N
292
N
sing
Y
293
N
sing
N
294
N
sing
Y
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
doub
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
doub
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
doub
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
doub
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
doub
N
393
N
sing
N
394
N
sing
N
395
N
sing
N
396
N
sing
Y
397
N
doub
Y
398
N
sing
Y
399
N
sing
N
400
N
sing
Y
401
N
doub
N
402
N
sing
Y
403
N
doub
N
404
N
sing
Y
405
N
sing
N
406
N
sing
N
407
N
sing
N
408
N
sing
N
409
N
sing
N
410
N
sing
N
411
N
sing
N
412
N
sing
N
413
N
sing
N
414
N
sing
N
415
N
doub
N
416
N
sing
N
417
N
sing
N
418
N
sing
N
419
N
sing
N
420
N
sing
N
421
N
sing
N
422
N
sing
N
423
N
sing
N
424
N
sing
N
425
N
sing
N
426
N
sing
N
427
N
sing
N
428
N
sing
N
429
N
sing
N
430
N
sing
N
431
N
sing
N
432
N
doub
N
433
N
sing
N
434
N
sing
N
435
N
sing
N
436
N
sing
N
437
N
sing
N
438
N
sing
N
439
N
sing
N
440
N
sing
N
441
N
sing
N
442
N
sing
N
443
N
sing
N
444
N
sing
N
445
N
doub
N
446
N
sing
N
447
N
sing
N
448
N
sing
N
449
N
sing
N
450
N
sing
N
451
N
sing
N
452
N
sing
N
453
N
sing
N
454
N
sing
N
455
N
sing
N
456
N
sing
N
457
N
sing
N
458
N
sing
N
459
N
sing
N
460
N
sing
N
461
N
doub
N
462
N
sing
N
463
N
sing
N
464
N
sing
N
465
N
sing
Y
466
N
doub
Y
467
N
sing
Y
468
N
sing
N
469
N
sing
Y
470
N
doub
Y
471
N
sing
Y
472
N
sing
N
473
N
sing
Y
474
N
sing
Y
475
N
doub
N
476
N
sing
Y
477
N
doub
N
478
N
sing
Y
479
N
sing
N
480
N
sing
N
481
N
sing
N
482
N
sing
N
483
N
sing
N
484
N
sing
N
485
N
sing
N
486
N
sing
N
487
N
sing
N
488
N
sing
N
489
N
doub
N
490
N
sing
N
491
N
sing
N
492
N
sing
N
493
N
sing
Y
494
N
doub
Y
495
N
sing
Y
496
N
sing
N
497
N
sing
Y
498
N
doub
N
499
N
sing
Y
500
N
doub
N
501
N
sing
Y
502
N
sing
N
503
N
sing
N
504
N
sing
N
505
N
sing
N
506
N
sing
N
507
N
sing
N
508
N
sing
N
509
N
sing
N
510
N
sing
N
511
N
sing
N
512
N
sing
N
513
N
doub
N
514
N
sing
N
515
N
sing
N
516
N
sing
N
517
N
sing
N
518
N
sing
N
519
N
sing
N
520
N
sing
N
521
N
sing
N
522
N
sing
N
523
N
sing
N
524
N
sing
US
Science
SCIEAS
0038
0036-8075
279
1534
1541
10.1126/science.279.5356.1534
9488652
A model for the mechanism of human topoisomerase I.
1998
10.2210/pdb1a36/pdb
pdb_00001a36
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100.00
1
UNKNOWN
IMAGE PLATE
1995-05
FUJI
UNKNOWN
SINGLE WAVELENGTH
M
x-ray
1
1.0
BL1-5
SSRL
SYNCHROTRON
SSRL BEAMLINE BL1-5
6790.468
DNA (5'-D(*AP*AP*AP*AP*AP*GP*AP*CP*TP*TP*AP*GP*AP*AP*AP*AP*A P*TP*TP*TP*TP*T)- 3')
1
syn
polymer
6705.373
DNA (5'-D(*AP*AP*AP*AP*AP*TP*TP*TP*TP*TP*CP*TP*AP*AP*GP*TP*C P*TP*TP*TP*TP*T)- 3')
1
syn
polymer
70022.859
TOPOISOMERASE I
5.99.1.2
CORE DOMAIN AND C-TERMINAL DOMAIN
Y723F
1
man
polymer
18.015
water
57
nat
water
no
no
(DA)(DA)(DA)(DA)(DA)(DG)(DA)(DC)(DT)(DT)(DA)(DG)(DA)(DA)(DA)(DA)(DA)(DT)(DT)(DT)
(DT)(DT)
AAAAAGACTTAGAAAAATTTTT
B
polydeoxyribonucleotide
no
no
(DA)(DA)(DA)(DA)(DA)(DT)(DT)(DT)(DT)(DT)(DC)(DT)(DA)(DA)(DG)(DT)(DC)(DT)(DT)(DT)
(DT)(DT)
AAAAATTTTTCTAAGTCTTTTT
C
polydeoxyribonucleotide
no
no
KPKNKDKDKKVPEPDNKKKKPKKEEEQKWKWWEEERYPEGIKWKFLEHKGPVFAPPYEPLPENVKFYYDGKVMKLSPKAE
EVATFFAKMLDHEYTTKEIFRKNFFKDWRKEMTNEEKNIITNLSKCDFTQMSQYFKAQTEARKQMSKEEKLKIKEENEKL
LKEYGFCIMDNHKERIANFKIEPPGLFRGRGNHPKMGMLKRRIMPEDIIINCSKDAKVPSPPPGHKWKEVRHDNKVTWLV
SWTENIQGSIKYIMLNPSSRIKGEKDWQKYETARRLKKCVDKIRNQYREDWKSKEMKVRQRAVALYFIDKLALRAGNEKE
EGETADTVGCCSLRVEHINLHPELDGQEYVVEFDFLGKDSIRYYNKVPVEKRVFKNLQLFMENKQPEDDLFDRLNTGILN
KHLQDLMEGLTAKVFRTYNASITLQQQLKELTAPDENIPAKILSYNRANRAVAILCNHQRAPPKTFEKSMMNLQTKIDAK
KEQLADARRDLKSAKADAKVMKDAKTKKVVESKKKAVQRLEEQLMKLEVQATDREENKQIALGTSKLNFLDPRITVAWCK
KWGVPIEKIYNKTQREKFAWAIDMADEDYEF
KPKNKDKDKKVPEPDNKKKKPKKEEEQKWKWWEEERYPEGIKWKFLEHKGPVFAPPYEPLPENVKFYYDGKVMKLSPKAE
EVATFFAKMLDHEYTTKEIFRKNFFKDWRKEMTNEEKNIITNLSKCDFTQMSQYFKAQTEARKQMSKEEKLKIKEENEKL
LKEYGFCIMDNHKERIANFKIEPPGLFRGRGNHPKMGMLKRRIMPEDIIINCSKDAKVPSPPPGHKWKEVRHDNKVTWLV
SWTENIQGSIKYIMLNPSSRIKGEKDWQKYETARRLKKCVDKIRNQYREDWKSKEMKVRQRAVALYFIDKLALRAGNEKE
EGETADTVGCCSLRVEHINLHPELDGQEYVVEFDFLGKDSIRYYNKVPVEKRVFKNLQLFMENKQPEDDLFDRLNTGILN
KHLQDLMEGLTAKVFRTYNASITLQQQLKELTAPDENIPAKILSYNRANRAVAILCNHQRAPPKTFEKSMMNLQTKIDAK
KEQLADARRDLKSAKADAKVMKDAKTKKVVESKKKAVQRLEEQLMKLEVQATDREENKQIALGTSKLNFLDPRITVAWCK
KWGVPIEKIYNKTQREKFAWAIDMADEDYEF
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
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n
n
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n
n
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n
n
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n
n
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n
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n
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n
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n
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n
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n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
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n
n
n
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n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
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n
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n
n
n
n
n
n
n
n
n
n
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n
n
n
n
n
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n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
human
Homo
fall armyworm
Spodoptera
sample
NUCLEUS
9606
Homo sapiens
7108
Spodoptera frugiperda
BACULOVIRUS
1
2.81
56.21
7.70
pH 7.70
3.120
1
20
B
2
C
121
7.579
B_DA2:DT121_C
1
-5.879
-0.346
-0.512
-0.558
9.683
1
20
B
3
C
120
-4.870
B_DA3:DT120_C
2
-4.368
0.639
-0.104
-0.265
7.650
1
20
B
4
C
119
-6.169
B_DA4:DT119_C
3
-16.923
0.579
0.025
-0.099
7.610
1
20
B
5
C
118
1.719
B_DA5:DT118_C
4
-11.951
0.243
0.185
-0.239
1.196
1
19
B
6
C
117
1.381
B_DG6:DC117_C
5
-11.784
0.027
-0.008
0.096
-3.612
1
20
B
7
C
116
-4.372
B_DA7:DT116_C
6
-5.464
0.517
0.297
-0.221
2.517
1
19
B
8
C
115
-2.588
B_DC8:DG115_C
7
-7.837
-0.131
-0.077
-0.362
-13.987
1
20
B
9
C
114
2.792
B_DT9:DA114_C
8
-4.720
0.026
0.660
-0.170
-3.331
1
20
B
10
C
113
3.100
B_DT10:DA113_C
9
-18.245
0.066
0.166
-0.119
-3.937
1
20
B
11
C
112
7.548
B_DA11:DT112_C
10
7.647
0.059
-0.646
-0.188
17.004
1
19
B
12
C
111
-1.725
B_DG12:DC111_C
11
2.752
-0.366
0.316
-0.251
6.949
1
20
B
13
C
110
3.995
B_DA13:DT110_C
12
-12.515
0.038
0.649
0.090
4.373
1
20
B
14
C
109
9.054
B_DA14:DT109_C
13
-5.827
-0.434
0.178
-0.024
2.466
1
20
B
15
C
108
-4.039
B_DA15:DT108_C
14
-13.715
1.016
0.018
-0.383
7.969
1
20
B
16
C
107
4.389
B_DA16:DT107_C
15
-9.484
0.165
0.215
-0.258
2.362
1
20
B
17
C
106
4.793
B_DA17:DT106_C
16
-14.820
-0.205
0.192
-0.215
2.379
1
20
B
18
C
105
-3.354
B_DT18:DA105_C
17
-13.094
-0.197
-0.379
-0.370
-5.508
1
20
B
19
C
104
0.186
B_DT19:DA104_C
18
-11.099
-0.803
0.813
-0.418
-9.459
1
20
B
20
C
103
-1.821
B_DT20:DA103_C
19
-12.673
0.676
0.108
-0.388
-4.545
1
20
B
21
C
102
9.957
B_DT21:DA102_C
20
-11.652
0.034
0.122
0.035
-10.827
1
20
B
22
C
101
6.552
B_DT22:DA101_C
21
-4.240
1.518
0.293
-0.432
2.894
35.704
B
B
2
3
18.768
C
C
121
120
2.918
11.273
-0.821
0.085
BB_DA2DA3:DT120DT121_CC
1
-5.716
9.516
33.460
-1.360
0.579
3.447
39.228
B
B
3
4
-10.104
C
C
120
119
3.550
-6.752
-0.327
0.348
BB_DA3DA4:DT119DT120_CC
2
-0.375
0.562
38.664
1.387
0.438
3.016
33.666
B
B
4
5
-6.387
C
C
119
118
2.977
-3.692
0.240
-0.547
BB_DA4DA5:DT118DT119_CC
3
-0.349
0.604
33.467
-0.392
-0.466
3.446
33.590
B
B
5
6
-6.248
C
C
118
117
3.340
-3.592
0.654
-0.625
BB_DA5DG6:DC117DT118_CC
4
4.956
-8.622
33.043
-0.466
-0.283
3.601
37.172
B
B
6
7
6.531
C
C
117
116
3.696
4.155
-0.254
-0.714
BB_DG6DA7:DT116DC117_CC
5
-0.474
0.746
36.945
-1.739
0.328
2.984
32.245
B
B
7
8
0.512
C
C
116
115
2.986
0.285
0.451
-0.629
BB_DA7DC8:DG115DT116_CC
6
0.257
-0.462
32.243
-1.178
-0.771
3.866
37.687
B
B
8
9
-4.022
C
C
115
114
3.811
-2.592
-0.209
-0.919
BB_DC8DT9:DA114DG115_CC
7
-3.839
5.956
37.411
-1.027
-0.261
3.002
36.186
B
B
9
10
-11.449
C
C
114
113
2.994
-7.060
-0.229
-0.476
BB_DT9DT10:DA113DA114_CC
8
3.002
-4.868
35.390
0.155
0.760
3.581
41.566
B
B
10
11
-3.112
C
C
113
112
3.526
-2.199
0.848
0.545
BB_DT10DA11:DT112DA113_CC
9
6.604
-9.346
41.005
1.024
-0.429
2.841
28.142
B
B
11
12
-1.412
C
C
112
111
2.745
-0.683
-0.883
0.714
BB_DA11DG12:DC111DT112_CC
10
-5.160
10.670
27.666
1.607
0.775
3.592
38.929
B
B
12
13
2.943
C
C
111
110
3.631
1.959
0.022
-0.496
BB_DG12DA13:DT110DC111_CC
11
-2.915
4.380
38.776
-1.006
-0.424
3.333
31.111
B
B
13
14
-15.654
C
C
110
109
3.263
-8.273
0.554
-0.532
BB_DA13DA14:DT109DT110_CC
12
4.267
-8.074
29.718
0.642
-0.190
3.005
43.124
B
B
14
15
-3.666
C
C
109
108
3.012
-2.692
-0.642
-0.413
BB_DA14DA15:DT108DT109_CC
13
1.706
-2.323
43.012
-0.318
1.028
3.129
32.654
B
B
15
16
-1.257
C
C
108
107
3.062
-0.706
1.033
-0.208
BB_DA15DA16:DT107DT108_CC
14
2.285
-4.067
32.569
-0.254
-1.461
3.224
33.279
B
B
16
17
-2.438
C
C
107
106
3.223
-1.396
-0.121
-0.158
BB_DA16DA17:DT106DT107_CC
15
0.620
-1.082
33.245
-0.047
0.314
3.005
36.631
B
B
17
18
5.008
C
C
106
105
3.118
3.139
0.039
-1.095
BB_DA17DT18:DA105DT106_CC
16
3.733
-5.956
36.316
-2.148
0.419
3.375
33.422
B
B
18
19
-1.189
C
C
105
104
3.485
-0.680
0.347
-0.529
BB_DT18DT19:DA104DA105_CC
17
-6.210
10.858
32.850
-0.802
-1.690
3.076
46.609
B
B
19
20
-8.048
C
C
104
103
3.099
-6.326
0.266
0.011
BB_DT19DT20:DA103DA104_CC
18
7.486
-9.524
45.623
0.520
0.263
2.914
33.811
B
B
20
21
2.454
C
C
103
102
2.925
1.427
0.409
-0.242
BB_DT20DT21:DA102DA103_CC
19
0.123
-0.212
33.781
-0.622
-0.686
3.372
40.793
B
B
21
22
6.212
C
C
102
101
3.345
4.322
-0.567
0.259
BB_DT21DT22:DA101DA102_CC
20
-1.488
2.139
40.547
-0.119
0.645
database_2
struct_ref_seq_dif
chem_comp_atom
chem_comp_bond
pdbx_initial_refinement_model
repository
Initial release
Version format compliance
Version format compliance
Database references
Data collection
Refinement description
1
0
1998-08-12
1
1
2008-05-22
1
2
2011-07-13
1
3
2021-11-03
1
4
2024-02-07
1
5
2024-04-03
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_ref_seq_dif.details
NDB
Y
NDB
1998-01-29
REL
HOH
water
NOTE THAT RESIDUES 174 - 214 AND 634 - 640 OF CHAIN A ARE
DISORDERED AND ARE NOT PRESENT IN THE MODEL. 1-22 OF
CHAIN C COMPRISE THE SCISSILE STRAND OF THE DNA, 101-122 OF
CHAIN D THE INTACT DNA STRAND.
TER
PHE 765 A IS THE C-TERMINAL RESIDUE OF THE 70 KDA FRAGMENT
OF HUMAN TOPO I.
THY 22 C IS THE 3' TERMINAL NUCLEOTIDE ON THE SCISSILE
STRAND OF THE DNA DUPLEX.
THY 122 D IS THE 3' TERMINAL NUCLEOTIDE ON THE INTACT
STRAND OF THE DNA DUPLEX.
RECONSTITUTED HUMAN TOPOISOMERASE I COVALENT COMPLEX WITH 22 BASE PAIR DUPLEX DNA
Other
experimental model
HOH
1017
4
HOH
HOH
1017
B
HOH
1032
4
HOH
HOH
1032
B
HOH
1042
4
HOH
HOH
1042
B
HOH
1043
4
HOH
HOH
1043
B
HOH
1046
4
HOH
HOH
1046
B
HOH
1015
4
HOH
HOH
1015
C
HOH
1041
4
HOH
HOH
1041
C
HOH
1059
4
HOH
HOH
1059
C
HOH
1001
4
HOH
HOH
1001
A
HOH
1002
4
HOH
HOH
1002
A
HOH
1003
4
HOH
HOH
1003
A
HOH
1004
4
HOH
HOH
1004
A
HOH
1005
4
HOH
HOH
1005
A
HOH
1006
4
HOH
HOH
1006
A
HOH
1007
4
HOH
HOH
1007
A
HOH
1008
4
HOH
HOH
1008
A
HOH
1009
4
HOH
HOH
1009
A
HOH
1010
4
HOH
HOH
1010
A
HOH
1011
4
HOH
HOH
1011
A
HOH
1012
4
HOH
HOH
1012
A
HOH
1013
4
HOH
HOH
1013
A
HOH
1014
4
HOH
HOH
1014
A
HOH
1016
4
HOH
HOH
1016
A
HOH
1018
4
HOH
HOH
1018
A
HOH
1019
4
HOH
HOH
1019
A
HOH
1020
4
HOH
HOH
1020
A
HOH
1021
4
HOH
HOH
1021
A
HOH
1022
4
HOH
HOH
1022
A
HOH
1023
4
HOH
HOH
1023
A
HOH
1024
4
HOH
HOH
1024
A
HOH
1025
4
HOH
HOH
1025
A
HOH
1026
4
HOH
HOH
1026
A
HOH
1027
4
HOH
HOH
1027
A
HOH
1028
4
HOH
HOH
1028
A
HOH
1029
4
HOH
HOH
1029
A
HOH
1030
4
HOH
HOH
1030
A
HOH
1031
4
HOH
HOH
1031
A
HOH
1033
4
HOH
HOH
1033
A
HOH
1034
4
HOH
HOH
1034
A
HOH
1035
4
HOH
HOH
1035
A
HOH
1037
4
HOH
HOH
1037
A
HOH
1038
4
HOH
HOH
1038
A
HOH
1039
4
HOH
HOH
1039
A
HOH
1040
4
HOH
HOH
1040
A
HOH
1044
4
HOH
HOH
1044
A
HOH
1045
4
HOH
HOH
1045
A
HOH
1047
4
HOH
HOH
1047
A
HOH
1048
4
HOH
HOH
1048
A
HOH
1049
4
HOH
HOH
1049
A
HOH
1050
4
HOH
HOH
1050
A
HOH
1051
4
HOH
HOH
1051
A
HOH
1052
4
HOH
HOH
1052
A
HOH
1054
4
HOH
HOH
1054
A
HOH
1055
4
HOH
HOH
1055
A
HOH
1056
4
HOH
HOH
1056
A
HOH
1057
4
HOH
HOH
1057
A
HOH
1058
4
HOH
HOH
1058
A
A
1
n
1
DA
1
B
A
2
n
2
DA
2
B
A
3
n
3
DA
3
B
A
4
n
4
DA
4
B
A
5
n
5
DA
5
B
G
6
n
6
DG
6
B
A
7
n
7
DA
7
B
C
8
n
8
DC
8
B
T
9
n
9
DT
9
B
T
10
n
10
DT
10
B
A
11
n
11
DA
11
B
G
12
n
12
DG
12
B
A
13
n
13
DA
13
B
A
14
n
14
DA
14
B
A
15
n
15
DA
15
B
A
16
n
16
DA
16
B
A
17
n
17
DA
17
B
T
18
n
18
DT
18
B
T
19
n
19
DT
19
B
T
20
n
20
DT
20
B
T
21
n
21
DT
21
B
T
22
n
22
DT
22
B
A
101
n
1
DA
101
C
A
102
n
2
DA
102
C
A
103
n
3
DA
103
C
A
104
n
4
DA
104
C
A
105
n
5
DA
105
C
T
106
n
6
DT
106
C
T
107
n
7
DT
107
C
T
108
n
8
DT
108
C
T
109
n
9
DT
109
C
T
110
n
10
DT
110
C
C
111
n
11
DC
111
C
T
112
n
12
DT
112
C
A
113
n
13
DA
113
C
A
114
n
14
DA
114
C
G
115
n
15
DG
115
C
T
116
n
16
DT
116
C
C
117
n
17
DC
117
C
T
118
n
18
DT
118
C
T
119
n
19
DT
119
C
T
120
n
20
DT
120
C
T
121
n
21
DT
121
C
T
122
n
22
DT
122
C
n
1
175
A
n
2
176
A
n
3
177
A
n
4
178
A
n
5
179
A
n
6
180
A
n
7
181
A
n
8
182
A
n
9
183
A
n
10
184
A
n
11
185
A
n
12
186
A
n
13
187
A
n
14
188
A
n
15
189
A
n
16
190
A
n
17
191
A
n
18
192
A
n
19
193
A
n
20
194
A
n
21
195
A
n
22
196
A
n
23
197
A
n
24
198
A
n
25
199
A
n
26
200
A
n
27
201
A
n
28
202
A
n
29
203
A
n
30
204
A
n
31
205
A
n
32
206
A
n
33
207
A
n
34
208
A
n
35
209
A
n
36
210
A
n
37
211
A
n
38
212
A
n
39
213
A
n
40
214
A
ILE
215
n
41
ILE
215
A
LYS
216
n
42
LYS
216
A
TRP
217
n
43
TRP
217
A
LYS
218
n
44
LYS
218
A
PHE
219
n
45
PHE
219
A
LEU
220
n
46
LEU
220
A
GLU
221
n
47
GLU
221
A
HIS
222
n
48
HIS
222
A
LYS
223
n
49
LYS
223
A
GLY
224
n
50
GLY
224
A
PRO
225
n
51
PRO
225
A
VAL
226
n
52
VAL
226
A
PHE
227
n
53
PHE
227
A
ALA
228
n
54
ALA
228
A
PRO
229
n
55
PRO
229
A
PRO
230
n
56
PRO
230
A
TYR
231
n
57
TYR
231
A
GLU
232
n
58
GLU
232
A
PRO
233
n
59
PRO
233
A
LEU
234
n
60
LEU
234
A
PRO
235
n
61
PRO
235
A
GLU
236
n
62
GLU
236
A
ASN
237
n
63
ASN
237
A
VAL
238
n
64
VAL
238
A
LYS
239
n
65
LYS
239
A
PHE
240
n
66
PHE
240
A
TYR
241
n
67
TYR
241
A
TYR
242
n
68
TYR
242
A
ASP
243
n
69
ASP
243
A
GLY
244
n
70
GLY
244
A
LYS
245
n
71
LYS
245
A
VAL
246
n
72
VAL
246
A
MET
247
n
73
MET
247
A
LYS
248
n
74
LYS
248
A
LEU
249
n
75
LEU
249
A
SER
250
n
76
SER
250
A
PRO
251
n
77
PRO
251
A
LYS
252
n
78
LYS
252
A
ALA
253
n
79
ALA
253
A
GLU
254
n
80
GLU
254
A
GLU
255
n
81
GLU
255
A
VAL
256
n
82
VAL
256
A
ALA
257
n
83
ALA
257
A
THR
258
n
84
THR
258
A
PHE
259
n
85
PHE
259
A
PHE
260
n
86
PHE
260
A
ALA
261
n
87
ALA
261
A
LYS
262
n
88
LYS
262
A
MET
263
n
89
MET
263
A
LEU
264
n
90
LEU
264
A
ASP
265
n
91
ASP
265
A
HIS
266
n
92
HIS
266
A
GLU
267
n
93
GLU
267
A
TYR
268
n
94
TYR
268
A
THR
269
n
95
THR
269
A
THR
270
n
96
THR
270
A
LYS
271
n
97
LYS
271
A
GLU
272
n
98
GLU
272
A
ILE
273
n
99
ILE
273
A
PHE
274
n
100
PHE
274
A
ARG
275
n
101
ARG
275
A
LYS
276
n
102
LYS
276
A
ASN
277
n
103
ASN
277
A
PHE
278
n
104
PHE
278
A
PHE
279
n
105
PHE
279
A
LYS
280
n
106
LYS
280
A
ASP
281
n
107
ASP
281
A
TRP
282
n
108
TRP
282
A
ARG
283
n
109
ARG
283
A
LYS
284
n
110
LYS
284
A
GLU
285
n
111
GLU
285
A
MET
286
n
112
MET
286
A
THR
287
n
113
THR
287
A
ASN
288
n
114
ASN
288
A
GLU
289
n
115
GLU
289
A
GLU
290
n
116
GLU
290
A
LYS
291
n
117
LYS
291
A
ASN
292
n
118
ASN
292
A
ILE
293
n
119
ILE
293
A
ILE
294
n
120
ILE
294
A
THR
295
n
121
THR
295
A
ASN
296
n
122
ASN
296
A
LEU
297
n
123
LEU
297
A
SER
298
n
124
SER
298
A
LYS
299
n
125
LYS
299
A
CYS
300
n
126
CYS
300
A
ASP
301
n
127
ASP
301
A
PHE
302
n
128
PHE
302
A
THR
303
n
129
THR
303
A
GLN
304
n
130
GLN
304
A
MET
305
n
131
MET
305
A
SER
306
n
132
SER
306
A
GLN
307
n
133
GLN
307
A
TYR
308
n
134
TYR
308
A
PHE
309
n
135
PHE
309
A
LYS
310
n
136
LYS
310
A
ALA
311
n
137
ALA
311
A
GLN
312
n
138
GLN
312
A
THR
313
n
139
THR
313
A
GLU
314
n
140
GLU
314
A
ALA
315
n
141
ALA
315
A
ARG
316
n
142
ARG
316
A
LYS
317
n
143
LYS
317
A
GLN
318
n
144
GLN
318
A
MET
319
n
145
MET
319
A
SER
320
n
146
SER
320
A
LYS
321
n
147
LYS
321
A
GLU
322
n
148
GLU
322
A
GLU
323
n
149
GLU
323
A
LYS
324
n
150
LYS
324
A
LEU
325
n
151
LEU
325
A
LYS
326
n
152
LYS
326
A
ILE
327
n
153
ILE
327
A
LYS
328
n
154
LYS
328
A
GLU
329
n
155
GLU
329
A
GLU
330
n
156
GLU
330
A
ASN
331
n
157
ASN
331
A
GLU
332
n
158
GLU
332
A
LYS
333
n
159
LYS
333
A
LEU
334
n
160
LEU
334
A
LEU
335
n
161
LEU
335
A
LYS
336
n
162
LYS
336
A
GLU
337
n
163
GLU
337
A
TYR
338
n
164
TYR
338
A
GLY
339
n
165
GLY
339
A
PHE
340
n
166
PHE
340
A
CYS
341
n
167
CYS
341
A
ILE
342
n
168
ILE
342
A
MET
343
n
169
MET
343
A
ASP
344
n
170
ASP
344
A
ASN
345
n
171
ASN
345
A
HIS
346
n
172
HIS
346
A
LYS
347
n
173
LYS
347
A
GLU
348
n
174
GLU
348
A
ARG
349
n
175
ARG
349
A
ILE
350
n
176
ILE
350
A
ALA
351
n
177
ALA
351
A
ASN
352
n
178
ASN
352
A
PHE
353
n
179
PHE
353
A
LYS
354
n
180
LYS
354
A
ILE
355
n
181
ILE
355
A
GLU
356
n
182
GLU
356
A
PRO
357
n
183
PRO
357
A
PRO
358
n
184
PRO
358
A
GLY
359
n
185
GLY
359
A
LEU
360
n
186
LEU
360
A
PHE
361
n
187
PHE
361
A
ARG
362
n
188
ARG
362
A
GLY
363
n
189
GLY
363
A
ARG
364
n
190
ARG
364
A
GLY
365
n
191
GLY
365
A
ASN
366
n
192
ASN
366
A
HIS
367
n
193
HIS
367
A
PRO
368
n
194
PRO
368
A
LYS
369
n
195
LYS
369
A
MET
370
n
196
MET
370
A
GLY
371
n
197
GLY
371
A
MET
372
n
198
MET
372
A
LEU
373
n
199
LEU
373
A
LYS
374
n
200
LYS
374
A
ARG
375
n
201
ARG
375
A
ARG
376
n
202
ARG
376
A
ILE
377
n
203
ILE
377
A
MET
378
n
204
MET
378
A
PRO
379
n
205
PRO
379
A
GLU
380
n
206
GLU
380
A
ASP
381
n
207
ASP
381
A
ILE
382
n
208
ILE
382
A
ILE
383
n
209
ILE
383
A
ILE
384
n
210
ILE
384
A
ASN
385
n
211
ASN
385
A
CYS
386
n
212
CYS
386
A
SER
387
n
213
SER
387
A
LYS
388
n
214
LYS
388
A
ASP
389
n
215
ASP
389
A
ALA
390
n
216
ALA
390
A
LYS
391
n
217
LYS
391
A
VAL
392
n
218
VAL
392
A
PRO
393
n
219
PRO
393
A
SER
394
n
220
SER
394
A
PRO
395
n
221
PRO
395
A
PRO
396
n
222
PRO
396
A
PRO
397
n
223
PRO
397
A
GLY
398
n
224
GLY
398
A
HIS
399
n
225
HIS
399
A
LYS
400
n
226
LYS
400
A
TRP
401
n
227
TRP
401
A
LYS
402
n
228
LYS
402
A
GLU
403
n
229
GLU
403
A
VAL
404
n
230
VAL
404
A
ARG
405
n
231
ARG
405
A
HIS
406
n
232
HIS
406
A
ASP
407
n
233
ASP
407
A
ASN
408
n
234
ASN
408
A
LYS
409
n
235
LYS
409
A
VAL
410
n
236
VAL
410
A
THR
411
n
237
THR
411
A
TRP
412
n
238
TRP
412
A
LEU
413
n
239
LEU
413
A
VAL
414
n
240
VAL
414
A
SER
415
n
241
SER
415
A
TRP
416
n
242
TRP
416
A
THR
417
n
243
THR
417
A
GLU
418
n
244
GLU
418
A
ASN
419
n
245
ASN
419
A
ILE
420
n
246
ILE
420
A
GLN
421
n
247
GLN
421
A
GLY
422
n
248
GLY
422
A
SER
423
n
249
SER
423
A
ILE
424
n
250
ILE
424
A
LYS
425
n
251
LYS
425
A
TYR
426
n
252
TYR
426
A
ILE
427
n
253
ILE
427
A
MET
428
n
254
MET
428
A
LEU
429
n
255
LEU
429
A
ASN
430
n
256
ASN
430
A
PRO
431
n
257
PRO
431
A
SER
432
n
258
SER
432
A
SER
433
n
259
SER
433
A
ARG
434
n
260
ARG
434
A
ILE
435
n
261
ILE
435
A
LYS
436
n
262
LYS
436
A
GLY
437
n
263
GLY
437
A
GLU
438
n
264
GLU
438
A
LYS
439
n
265
LYS
439
A
ASP
440
n
266
ASP
440
A
TRP
441
n
267
TRP
441
A
GLN
442
n
268
GLN
442
A
LYS
443
n
269
LYS
443
A
TYR
444
n
270
TYR
444
A
GLU
445
n
271
GLU
445
A
THR
446
n
272
THR
446
A
ALA
447
n
273
ALA
447
A
ARG
448
n
274
ARG
448
A
ARG
449
n
275
ARG
449
A
LEU
450
n
276
LEU
450
A
LYS
451
n
277
LYS
451
A
LYS
452
n
278
LYS
452
A
CYS
453
n
279
CYS
453
A
VAL
454
n
280
VAL
454
A
ASP
455
n
281
ASP
455
A
LYS
456
n
282
LYS
456
A
ILE
457
n
283
ILE
457
A
ARG
458
n
284
ARG
458
A
ASN
459
n
285
ASN
459
A
GLN
460
n
286
GLN
460
A
TYR
461
n
287
TYR
461
A
ARG
462
n
288
ARG
462
A
GLU
463
n
289
GLU
463
A
ASP
464
n
290
ASP
464
A
TRP
465
n
291
TRP
465
A
LYS
466
n
292
LYS
466
A
SER
467
n
293
SER
467
A
LYS
468
n
294
LYS
468
A
GLU
469
n
295
GLU
469
A
MET
470
n
296
MET
470
A
LYS
471
n
297
LYS
471
A
VAL
472
n
298
VAL
472
A
ARG
473
n
299
ARG
473
A
GLN
474
n
300
GLN
474
A
ARG
475
n
301
ARG
475
A
ALA
476
n
302
ALA
476
A
VAL
477
n
303
VAL
477
A
ALA
478
n
304
ALA
478
A
LEU
479
n
305
LEU
479
A
TYR
480
n
306
TYR
480
A
PHE
481
n
307
PHE
481
A
ILE
482
n
308
ILE
482
A
ASP
483
n
309
ASP
483
A
LYS
484
n
310
LYS
484
A
LEU
485
n
311
LEU
485
A
ALA
486
n
312
ALA
486
A
LEU
487
n
313
LEU
487
A
ARG
488
n
314
ARG
488
A
ALA
489
n
315
ALA
489
A
GLY
490
n
316
GLY
490
A
ASN
491
n
317
ASN
491
A
GLU
492
n
318
GLU
492
A
LYS
493
n
319
LYS
493
A
GLU
494
n
320
GLU
494
A
GLU
495
n
321
GLU
495
A
GLY
496
n
322
GLY
496
A
GLU
497
n
323
GLU
497
A
THR
498
n
324
THR
498
A
ALA
499
n
325
ALA
499
A
ASP
500
n
326
ASP
500
A
THR
501
n
327
THR
501
A
VAL
502
n
328
VAL
502
A
GLY
503
n
329
GLY
503
A
CYS
504
n
330
CYS
504
A
CYS
505
n
331
CYS
505
A
SER
506
n
332
SER
506
A
LEU
507
n
333
LEU
507
A
ARG
508
n
334
ARG
508
A
VAL
509
n
335
VAL
509
A
GLU
510
n
336
GLU
510
A
HIS
511
n
337
HIS
511
A
ILE
512
n
338
ILE
512
A
ASN
513
n
339
ASN
513
A
LEU
514
n
340
LEU
514
A
HIS
515
n
341
HIS
515
A
PRO
516
n
342
PRO
516
A
GLU
517
n
343
GLU
517
A
LEU
518
n
344
LEU
518
A
ASP
519
n
345
ASP
519
A
GLY
520
n
346
GLY
520
A
GLN
521
n
347
GLN
521
A
GLU
522
n
348
GLU
522
A
TYR
523
n
349
TYR
523
A
VAL
524
n
350
VAL
524
A
VAL
525
n
351
VAL
525
A
GLU
526
n
352
GLU
526
A
PHE
527
n
353
PHE
527
A
ASP
528
n
354
ASP
528
A
PHE
529
n
355
PHE
529
A
LEU
530
n
356
LEU
530
A
GLY
531
n
357
GLY
531
A
LYS
532
n
358
LYS
532
A
ASP
533
n
359
ASP
533
A
SER
534
n
360
SER
534
A
ILE
535
n
361
ILE
535
A
ARG
536
n
362
ARG
536
A
TYR
537
n
363
TYR
537
A
TYR
538
n
364
TYR
538
A
ASN
539
n
365
ASN
539
A
LYS
540
n
366
LYS
540
A
VAL
541
n
367
VAL
541
A
PRO
542
n
368
PRO
542
A
VAL
543
n
369
VAL
543
A
GLU
544
n
370
GLU
544
A
LYS
545
n
371
LYS
545
A
ARG
546
n
372
ARG
546
A
VAL
547
n
373
VAL
547
A
PHE
548
n
374
PHE
548
A
LYS
549
n
375
LYS
549
A
ASN
550
n
376
ASN
550
A
LEU
551
n
377
LEU
551
A
GLN
552
n
378
GLN
552
A
LEU
553
n
379
LEU
553
A
PHE
554
n
380
PHE
554
A
MET
555
n
381
MET
555
A
GLU
556
n
382
GLU
556
A
ASN
557
n
383
ASN
557
A
LYS
558
n
384
LYS
558
A
GLN
559
n
385
GLN
559
A
PRO
560
n
386
PRO
560
A
GLU
561
n
387
GLU
561
A
ASP
562
n
388
ASP
562
A
ASP
563
n
389
ASP
563
A
LEU
564
n
390
LEU
564
A
PHE
565
n
391
PHE
565
A
ASP
566
n
392
ASP
566
A
ARG
567
n
393
ARG
567
A
LEU
568
n
394
LEU
568
A
ASN
569
n
395
ASN
569
A
THR
570
n
396
THR
570
A
GLY
571
n
397
GLY
571
A
ILE
572
n
398
ILE
572
A
LEU
573
n
399
LEU
573
A
ASN
574
n
400
ASN
574
A
LYS
575
n
401
LYS
575
A
HIS
576
n
402
HIS
576
A
LEU
577
n
403
LEU
577
A
GLN
578
n
404
GLN
578
A
ASP
579
n
405
ASP
579
A
LEU
580
n
406
LEU
580
A
MET
581
n
407
MET
581
A
GLU
582
n
408
GLU
582
A
GLY
583
n
409
GLY
583
A
LEU
584
n
410
LEU
584
A
THR
585
n
411
THR
585
A
ALA
586
n
412
ALA
586
A
LYS
587
n
413
LYS
587
A
VAL
588
n
414
VAL
588
A
PHE
589
n
415
PHE
589
A
ARG
590
n
416
ARG
590
A
THR
591
n
417
THR
591
A
TYR
592
n
418
TYR
592
A
ASN
593
n
419
ASN
593
A
ALA
594
n
420
ALA
594
A
SER
595
n
421
SER
595
A
ILE
596
n
422
ILE
596
A
THR
597
n
423
THR
597
A
LEU
598
n
424
LEU
598
A
GLN
599
n
425
GLN
599
A
GLN
600
n
426
GLN
600
A
GLN
601
n
427
GLN
601
A
LEU
602
n
428
LEU
602
A
LYS
603
n
429
LYS
603
A
GLU
604
n
430
GLU
604
A
LEU
605
n
431
LEU
605
A
THR
606
n
432
THR
606
A
ALA
607
n
433
ALA
607
A
PRO
608
n
434
PRO
608
A
ASP
609
n
435
ASP
609
A
GLU
610
n
436
GLU
610
A
ASN
611
n
437
ASN
611
A
ILE
612
n
438
ILE
612
A
PRO
613
n
439
PRO
613
A
ALA
614
n
440
ALA
614
A
LYS
615
n
441
LYS
615
A
ILE
616
n
442
ILE
616
A
LEU
617
n
443
LEU
617
A
SER
618
n
444
SER
618
A
TYR
619
n
445
TYR
619
A
ASN
620
n
446
ASN
620
A
ARG
621
n
447
ARG
621
A
ALA
622
n
448
ALA
622
A
ASN
623
n
449
ASN
623
A
ARG
624
n
450
ARG
624
A
ALA
625
n
451
ALA
625
A
VAL
626
n
452
VAL
626
A
ALA
627
n
453
ALA
627
A
ILE
628
n
454
ILE
628
A
LEU
629
n
455
LEU
629
A
CYS
630
n
456
CYS
630
A
ASN
631
n
457
ASN
631
A
HIS
632
n
458
HIS
632
A
GLN
633
n
459
GLN
633
A
n
460
634
A
n
461
635
A
n
462
636
A
n
463
637
A
n
464
638
A
n
465
639
A
n
466
640
A
GLU
641
n
467
GLU
641
A
LYS
642
n
468
LYS
642
A
SER
643
n
469
SER
643
A
MET
644
n
470
MET
644
A
MET
645
n
471
MET
645
A
ASN
646
n
472
ASN
646
A
LEU
647
n
473
LEU
647
A
GLN
648
n
474
GLN
648
A
THR
649
n
475
THR
649
A
LYS
650
n
476
LYS
650
A
ILE
651
n
477
ILE
651
A
ASP
652
n
478
ASP
652
A
ALA
653
n
479
ALA
653
A
LYS
654
n
480
LYS
654
A
LYS
655
n
481
LYS
655
A
GLU
656
n
482
GLU
656
A
GLN
657
n
483
GLN
657
A
LEU
658
n
484
LEU
658
A
ALA
659
n
485
ALA
659
A
ASP
660
n
486
ASP
660
A
ALA
661
n
487
ALA
661
A
ARG
662
n
488
ARG
662
A
ARG
663
n
489
ARG
663
A
ASP
664
n
490
ASP
664
A
LEU
665
n
491
LEU
665
A
LYS
666
n
492
LYS
666
A
SER
667
n
493
SER
667
A
ALA
668
n
494
ALA
668
A
LYS
669
n
495
LYS
669
A
ALA
670
n
496
ALA
670
A
ASP
671
n
497
ASP
671
A
ALA
672
n
498
ALA
672
A
LYS
673
n
499
LYS
673
A
VAL
674
n
500
VAL
674
A
MET
675
n
501
MET
675
A
LYS
676
n
502
LYS
676
A
ASP
677
n
503
ASP
677
A
ALA
678
n
504
ALA
678
A
LYS
679
n
505
LYS
679
A
THR
680
n
506
THR
680
A
LYS
681
n
507
LYS
681
A
LYS
682
n
508
LYS
682
A
VAL
683
n
509
VAL
683
A
VAL
684
n
510
VAL
684
A
GLU
685
n
511
GLU
685
A
SER
686
n
512
SER
686
A
LYS
687
n
513
LYS
687
A
LYS
688
n
514
LYS
688
A
LYS
689
n
515
LYS
689
A
ALA
690
n
516
ALA
690
A
VAL
691
n
517
VAL
691
A
GLN
692
n
518
GLN
692
A
ARG
693
n
519
ARG
693
A
LEU
694
n
520
LEU
694
A
GLU
695
n
521
GLU
695
A
GLU
696
n
522
GLU
696
A
GLN
697
n
523
GLN
697
A
LEU
698
n
524
LEU
698
A
MET
699
n
525
MET
699
A
LYS
700
n
526
LYS
700
A
LEU
701
n
527
LEU
701
A
GLU
702
n
528
GLU
702
A
VAL
703
n
529
VAL
703
A
GLN
704
n
530
GLN
704
A
ALA
705
n
531
ALA
705
A
THR
706
n
532
THR
706
A
ASP
707
n
533
ASP
707
A
ARG
708
n
534
ARG
708
A
GLU
709
n
535
GLU
709
A
GLU
710
n
536
GLU
710
A
ASN
711
n
537
ASN
711
A
LYS
712
n
538
LYS
712
A
GLN
713
n
539
GLN
713
A
ILE
714
n
540
ILE
714
A
ALA
715
n
541
ALA
715
A
LEU
716
n
542
LEU
716
A
GLY
717
n
543
GLY
717
A
THR
718
n
544
THR
718
A
SER
719
n
545
SER
719
A
LYS
720
n
546
LYS
720
A
LEU
721
n
547
LEU
721
A
ASN
722
n
548
ASN
722
A
PHE
723
n
549
PHE
723
A
LEU
724
n
550
LEU
724
A
ASP
725
n
551
ASP
725
A
PRO
726
n
552
PRO
726
A
ARG
727
n
553
ARG
727
A
ILE
728
n
554
ILE
728
A
THR
729
n
555
THR
729
A
VAL
730
n
556
VAL
730
A
ALA
731
n
557
ALA
731
A
TRP
732
n
558
TRP
732
A
CYS
733
n
559
CYS
733
A
LYS
734
n
560
LYS
734
A
LYS
735
n
561
LYS
735
A
TRP
736
n
562
TRP
736
A
GLY
737
n
563
GLY
737
A
VAL
738
n
564
VAL
738
A
PRO
739
n
565
PRO
739
A
ILE
740
n
566
ILE
740
A
GLU
741
n
567
GLU
741
A
LYS
742
n
568
LYS
742
A
ILE
743
n
569
ILE
743
A
TYR
744
n
570
TYR
744
A
ASN
745
n
571
ASN
745
A
LYS
746
n
572
LYS
746
A
THR
747
n
573
THR
747
A
GLN
748
n
574
GLN
748
A
ARG
749
n
575
ARG
749
A
GLU
750
n
576
GLU
750
A
LYS
751
n
577
LYS
751
A
PHE
752
n
578
PHE
752
A
ALA
753
n
579
ALA
753
A
TRP
754
n
580
TRP
754
A
ALA
755
n
581
ALA
755
A
ILE
756
n
582
ILE
756
A
ASP
757
n
583
ASP
757
A
MET
758
n
584
MET
758
A
ALA
759
n
585
ALA
759
A
ASP
760
n
586
ASP
760
A
GLU
761
n
587
GLU
761
A
ASP
762
n
588
ASP
762
A
TYR
763
n
589
TYR
763
A
GLU
764
n
590
GLU
764
A
PHE
765
n
591
PHE
765
A
author_defined_assembly
3
trimeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
O
PHE
240
C
O
PHE
66
A
N
MET
247
C
N
MET
73
A
O
CYS
341
C
O
CYS
167
A
N
GLU
348
C
N
GLU
174
A
O
ILE
384
C
O
ILE
210
A
N
GLU
403
C
N
GLU
229
A
O
VAL
414
C
O
VAL
240
A
N
ILE
427
C
N
ILE
253
A
O
ASN
513
C
O
ASN
339
A
N
GLU
526
C
N
GLU
352
A
O
VAL
525
C
O
VAL
351
A
N
VAL
541
C
N
VAL
367
1
A
CG
LYS
248
C
CG
LYS
74
1
Y
1
A
CD
LYS
248
C
CD
LYS
74
1
Y
1
A
CE
LYS
248
C
CE
LYS
74
1
Y
1
A
NZ
LYS
248
C
NZ
LYS
74
1
Y
1
A
CG
LYS
276
C
CG
LYS
102
1
Y
1
A
CD
LYS
276
C
CD
LYS
102
1
Y
1
A
CE
LYS
276
C
CE
LYS
102
1
Y
1
A
NZ
LYS
276
C
NZ
LYS
102
1
Y
1
A
CG
GLU
289
C
CG
GLU
115
1
Y
1
A
CD
GLU
289
C
CD
GLU
115
1
Y
1
A
OE1
GLU
289
C
OE1
GLU
115
1
Y
1
A
OE2
GLU
289
C
OE2
GLU
115
1
Y
1
A
CG
GLU
314
C
CG
GLU
140
1
Y
1
A
CD
GLU
314
C
CD
GLU
140
1
Y
1
A
OE1
GLU
314
C
OE1
GLU
140
1
Y
1
A
OE2
GLU
314
C
OE2
GLU
140
1
Y
1
A
CG
ARG
316
C
CG
ARG
142
1
Y
1
A
CD
ARG
316
C
CD
ARG
142
1
Y
1
A
NE
ARG
316
C
NE
ARG
142
1
Y
1
A
CZ
ARG
316
C
CZ
ARG
142
1
Y
1
A
NH1
ARG
316
C
NH1
ARG
142
1
Y
1
A
NH2
ARG
316
C
NH2
ARG
142
1
Y
1
A
CG
LYS
317
C
CG
LYS
143
1
Y
1
A
CD
LYS
317
C
CD
LYS
143
1
Y
1
A
CE
LYS
317
C
CE
LYS
143
1
Y
1
A
NZ
LYS
317
C
NZ
LYS
143
1
Y
1
A
CG
GLN
318
C
CG
GLN
144
1
Y
1
A
CD
GLN
318
C
CD
GLN
144
1
Y
1
A
OE1
GLN
318
C
OE1
GLN
144
1
Y
1
A
NE2
GLN
318
C
NE2
GLN
144
1
Y
1
A
CG
MET
319
C
CG
MET
145
1
Y
1
A
SD
MET
319
C
SD
MET
145
1
Y
1
A
CE
MET
319
C
CE
MET
145
1
Y
1
A
CG
LYS
321
C
CG
LYS
147
1
Y
1
A
CD
LYS
321
C
CD
LYS
147
1
Y
1
A
CE
LYS
321
C
CE
LYS
147
1
Y
1
A
NZ
LYS
321
C
NZ
LYS
147
1
Y
1
A
CG
GLU
322
C
CG
GLU
148
1
Y
1
A
CD
GLU
322
C
CD
GLU
148
1
Y
1
A
OE1
GLU
322
C
OE1
GLU
148
1
Y
1
A
OE2
GLU
322
C
OE2
GLU
148
1
Y
1
A
CG
GLU
323
C
CG
GLU
149
1
Y
1
A
CD
GLU
323
C
CD
GLU
149
1
Y
1
A
OE1
GLU
323
C
OE1
GLU
149
1
Y
1
A
OE2
GLU
323
C
OE2
GLU
149
1
Y
1
A
CG
LYS
326
C
CG
LYS
152
1
Y
1
A
CD
LYS
326
C
CD
LYS
152
1
Y
1
A
CE
LYS
326
C
CE
LYS
152
1
Y
1
A
NZ
LYS
326
C
NZ
LYS
152
1
Y
1
A
CG
GLU
332
C
CG
GLU
158
1
Y
1
A
CD
GLU
332
C
CD
GLU
158
1
Y
1
A
OE1
GLU
332
C
OE1
GLU
158
1
Y
1
A
OE2
GLU
332
C
OE2
GLU
158
1
Y
1
A
CG
LYS
333
C
CG
LYS
159
1
Y
1
A
CD
LYS
333
C
CD
LYS
159
1
Y
1
A
CE
LYS
333
C
CE
LYS
159
1
Y
1
A
NZ
LYS
333
C
NZ
LYS
159
1
Y
1
A
CG
ARG
462
C
CG
ARG
288
1
Y
1
A
CD
ARG
462
C
CD
ARG
288
1
Y
1
A
NE
ARG
462
C
NE
ARG
288
1
Y
1
A
CZ
ARG
462
C
CZ
ARG
288
1
Y
1
A
NH1
ARG
462
C
NH1
ARG
288
1
Y
1
A
NH2
ARG
462
C
NH2
ARG
288
1
Y
1
A
CG
GLU
463
C
CG
GLU
289
1
Y
1
A
CD
GLU
463
C
CD
GLU
289
1
Y
1
A
OE1
GLU
463
C
OE1
GLU
289
1
Y
1
A
OE2
GLU
463
C
OE2
GLU
289
1
Y
1
A
CG
LYS
466
C
CG
LYS
292
1
Y
1
A
CD
LYS
466
C
CD
LYS
292
1
Y
1
A
CE
LYS
466
C
CE
LYS
292
1
Y
1
A
NZ
LYS
466
C
NZ
LYS
292
1
Y
1
A
CG
LYS
468
C
CG
LYS
294
1
Y
1
A
CD
LYS
468
C
CD
LYS
294
1
Y
1
A
CE
LYS
468
C
CE
LYS
294
1
Y
1
A
NZ
LYS
468
C
NZ
LYS
294
1
Y
1
A
CG
LYS
471
C
CG
LYS
297
1
Y
1
A
CD
LYS
471
C
CD
LYS
297
1
Y
1
A
CE
LYS
471
C
CE
LYS
297
1
Y
1
A
NZ
LYS
471
C
NZ
LYS
297
1
Y
1
A
CG
LYS
484
C
CG
LYS
310
1
Y
1
A
CD
LYS
484
C
CD
LYS
310
1
Y
1
A
CE
LYS
484
C
CE
LYS
310
1
Y
1
A
NZ
LYS
484
C
NZ
LYS
310
1
Y
1
A
CG
GLU
495
C
CG
GLU
321
1
Y
1
A
CD
GLU
495
C
CD
GLU
321
1
Y
1
A
OE1
GLU
495
C
OE1
GLU
321
1
Y
1
A
OE2
GLU
495
C
OE2
GLU
321
1
Y
1
A
CG
ARG
546
C
CG
ARG
372
1
Y
1
A
CD
ARG
546
C
CD
ARG
372
1
Y
1
A
NE
ARG
546
C
NE
ARG
372
1
Y
1
A
CZ
ARG
546
C
CZ
ARG
372
1
Y
1
A
NH1
ARG
546
C
NH1
ARG
372
1
Y
1
A
NH2
ARG
546
C
NH2
ARG
372
1
Y
1
A
CG
GLU
582
C
CG
GLU
408
1
Y
1
A
CD
GLU
582
C
CD
GLU
408
1
Y
1
A
OE1
GLU
582
C
OE1
GLU
408
1
Y
1
A
OE2
GLU
582
C
OE2
GLU
408
1
Y
1
A
CG
ASP
609
C
CG
ASP
435
1
Y
1
A
OD1
ASP
609
C
OD1
ASP
435
1
Y
1
A
OD2
ASP
609
C
OD2
ASP
435
1
Y
1
A
CG
GLU
610
C
CG
GLU
436
1
Y
1
A
CD
GLU
610
C
CD
GLU
436
1
Y
1
A
OE1
GLU
610
C
OE1
GLU
436
1
Y
1
A
OE2
GLU
610
C
OE2
GLU
436
1
Y
1
A
CG
ASN
611
C
CG
ASN
437
1
Y
1
A
OD1
ASN
611
C
OD1
ASN
437
1
Y
1
A
ND2
ASN
611
C
ND2
ASN
437
1
Y
1
A
CG
GLN
633
C
CG
GLN
459
1
Y
1
A
CD
GLN
633
C
CD
GLN
459
1
Y
1
A
OE1
GLN
633
C
OE1
GLN
459
1
Y
1
A
NE2
GLN
633
C
NE2
GLN
459
1
Y
1
A
CG
GLU
641
C
CG
GLU
467
1
Y
1
A
CD
GLU
641
C
CD
GLU
467
1
Y
1
A
OE1
GLU
641
C
OE1
GLU
467
1
Y
1
A
OE2
GLU
641
C
OE2
GLU
467
1
Y
1
A
CG
LYS
642
C
CG
LYS
468
1
Y
1
A
CD
LYS
642
C
CD
LYS
468
1
Y
1
A
CE
LYS
642
C
CE
LYS
468
1
Y
1
A
NZ
LYS
642
C
NZ
LYS
468
1
Y
1
A
OG
SER
643
C
OG
SER
469
1
Y
1
A
CG
MET
644
C
CG
MET
470
1
Y
1
A
SD
MET
644
C
SD
MET
470
1
Y
1
A
CE
MET
644
C
CE
MET
470
1
Y
1
A
CG
MET
645
C
CG
MET
471
1
Y
1
A
SD
MET
645
C
SD
MET
471
1
Y
1
A
CE
MET
645
C
CE
MET
471
1
Y
1
A
CG
ASN
646
C
CG
ASN
472
1
Y
1
A
OD1
ASN
646
C
OD1
ASN
472
1
Y
1
A
ND2
ASN
646
C
ND2
ASN
472
1
Y
1
A
CG
ASP
660
C
CG
ASP
486
1
Y
1
A
OD1
ASP
660
C
OD1
ASP
486
1
Y
1
A
OD2
ASP
660
C
OD2
ASP
486
1
Y
1
A
CG1
VAL
674
C
CG1
VAL
500
1
Y
1
A
CG2
VAL
674
C
CG2
VAL
500
1
Y
1
A
CG
ARG
693
C
CG
ARG
519
1
Y
1
A
CD
ARG
693
C
CD
ARG
519
1
Y
1
A
NE
ARG
693
C
NE
ARG
519
1
Y
1
A
CZ
ARG
693
C
CZ
ARG
519
1
Y
1
A
NH1
ARG
693
C
NH1
ARG
519
1
Y
1
A
NH2
ARG
693
C
NH2
ARG
519
1
Y
1
A
CG
GLU
696
C
CG
GLU
522
1
Y
1
A
CD
GLU
696
C
CD
GLU
522
1
Y
1
A
OE1
GLU
696
C
OE1
GLU
522
1
Y
1
A
OE2
GLU
696
C
OE2
GLU
522
1
Y
1
A
CG
LYS
712
C
CG
LYS
538
1
Y
1
A
CD
LYS
712
C
CD
LYS
538
1
Y
1
A
CE
LYS
712
C
CE
LYS
538
1
Y
1
A
NZ
LYS
712
C
NZ
LYS
538
1
Y
1
A
CG
LYS
735
C
CG
LYS
561
1
Y
1
A
CD
LYS
735
C
CD
LYS
561
1
Y
1
A
CE
LYS
735
C
CE
LYS
561
1
Y
1
A
NZ
LYS
735
C
NZ
LYS
561
1
Y
1
A
CG
GLU
741
C
CG
GLU
567
1
Y
1
A
CD
GLU
741
C
CD
GLU
567
1
Y
1
A
OE1
GLU
741
C
OE1
GLU
567
1
Y
1
A
OE2
GLU
741
C
OE2
GLU
567
1
Y
1
A
CG
LYS
742
C
CG
LYS
568
1
Y
1
A
CD
LYS
742
C
CD
LYS
568
1
Y
1
A
CE
LYS
742
C
CE
LYS
568
1
Y
1
A
NZ
LYS
742
C
NZ
LYS
568
1
Y
1
A
CG
ASP
760
C
CG
ASP
586
1
Y
1
A
OD1
ASP
760
C
OD1
ASP
586
1
Y
1
A
OD2
ASP
760
C
OD2
ASP
586
1
Y
1
A
CG
ASP
762
C
CG
ASP
588
1
Y
1
A
OD1
ASP
762
C
OD1
ASP
588
1
Y
1
A
OD2
ASP
762
C
OD2
ASP
588
1
Y
1
A
CG
GLU
764
C
CG
GLU
590
1
Y
1
A
CD
GLU
764
C
CD
GLU
590
1
Y
1
A
OE1
GLU
764
C
OE1
GLU
590
1
Y
1
A
OE2
GLU
764
C
OE2
GLU
590
1
Y
1
A
LYS
175
C
LYS
1
1
Y
1
A
PRO
176
C
PRO
2
1
Y
1
A
LYS
177
C
LYS
3
1
Y
1
A
ASN
178
C
ASN
4
1
Y
1
A
LYS
179
C
LYS
5
1
Y
1
A
ASP
180
C
ASP
6
1
Y
1
A
LYS
181
C
LYS
7
1
Y
1
A
ASP
182
C
ASP
8
1
Y
1
A
LYS
183
C
LYS
9
1
Y
1
A
LYS
184
C
LYS
10
1
Y
1
A
VAL
185
C
VAL
11
1
Y
1
A
PRO
186
C
PRO
12
1
Y
1
A
GLU
187
C
GLU
13
1
Y
1
A
PRO
188
C
PRO
14
1
Y
1
A
ASP
189
C
ASP
15
1
Y
1
A
ASN
190
C
ASN
16
1
Y
1
A
LYS
191
C
LYS
17
1
Y
1
A
LYS
192
C
LYS
18
1
Y
1
A
LYS
193
C
LYS
19
1
Y
1
A
LYS
194
C
LYS
20
1
Y
1
A
PRO
195
C
PRO
21
1
Y
1
A
LYS
196
C
LYS
22
1
Y
1
A
LYS
197
C
LYS
23
1
Y
1
A
GLU
198
C
GLU
24
1
Y
1
A
GLU
199
C
GLU
25
1
Y
1
A
GLU
200
C
GLU
26
1
Y
1
A
GLN
201
C
GLN
27
1
Y
1
A
LYS
202
C
LYS
28
1
Y
1
A
TRP
203
C
TRP
29
1
Y
1
A
LYS
204
C
LYS
30
1
Y
1
A
TRP
205
C
TRP
31
1
Y
1
A
TRP
206
C
TRP
32
1
Y
1
A
GLU
207
C
GLU
33
1
Y
1
A
GLU
208
C
GLU
34
1
Y
1
A
GLU
209
C
GLU
35
1
Y
1
A
ARG
210
C
ARG
36
1
Y
1
A
TYR
211
C
TYR
37
1
Y
1
A
PRO
212
C
PRO
38
1
Y
1
A
GLU
213
C
GLU
39
1
Y
1
A
GLY
214
C
GLY
40
1
Y
1
A
ARG
634
C
ARG
460
1
Y
1
A
ALA
635
C
ALA
461
1
Y
1
A
PRO
636
C
PRO
462
1
Y
1
A
PRO
637
C
PRO
463
1
Y
1
A
LYS
638
C
LYS
464
1
Y
1
A
THR
639
C
THR
465
1
Y
1
A
PHE
640
C
PHE
466
1
Y
1
C
DT
108
0.080
SIDE CHAIN
1
C
DG
115
0.066
SIDE CHAIN
1
C
DT
121
0.081
SIDE CHAIN
1
-5.82
0.80
102.40
96.58
C
C
C
C3'
C2'
C1'
DA
DA
DA
103
103
103
N
1
A
ASP
265
-90.93
31.23
1
A
GLU
272
-62.50
-71.97
1
A
ILE
293
-95.36
-61.55
1
A
MET
319
-45.10
157.73
1
A
ASP
344
55.54
-127.85
1
A
ALA
351
-77.19
-72.84
1
A
GLU
403
-179.92
141.44
1
A
ASN
459
-68.10
1.43
1
A
ASP
519
39.27
38.19
1
A
PHE
565
-108.02
69.56
1
A
CYS
630
-68.85
0.75
1
A
LYS
642
-74.63
32.64
1
A
LEU
647
-56.20
-74.26
1
A
ASP
677
-47.90
-97.43
1
A
ALA
678
-175.74
-50.80
1
A
GLU
696
-56.37
-74.77
1
A
ASP
707
-69.36
-71.01
1
A
ASN
711
-106.33
45.69
1
A
ASP
762
-94.91
31.85
PARHCSDX.PRO
TOPHCSDX.PRO
PARAM_NDBX.DNA
TOP_NDBX.DNA
-7.840
0.0000
-0.050
1.3540
0.0000
6.4860
0.3120000
0.2240000
0.2240000
2.800
8.000
1445
21217
7.000
94.700
RANDOM
10000000.000
0.0010
1
THROUGHOUT
2.000
RIGID BODY REFINEMENT
RECONSTITUTED HUMAN TOPOISOMERASE I COVALENT COMPLEX WITH 22 BASE PAIR DUPLEX DNA
2.800
8.000
57
5285
0
896
4332
0.013
1.58
22.1
1.51
0.4450000
0.3220000
2.84
41
710
25
5.50
77.70
2.800
20.000
1A36
21217
2.000
0.0550000
1
3.000
94.700
0.3050000
2.800
2.900
2.500
86.80
model building
X-PLOR
refinement
X-PLOR
3.1
data reduction
DENZO
data scaling
SCALEPACK
phasing
X-PLOR
TOPOISOMERASE I/DNA COMPLEX
1
N
N
2
N
N
3
N
N
4
N
N
4
N
N
4
N
N
A
PRO
251
C
PRO
77
HELX_P
A
MET
263
C
MET
89
1
1
13
A
GLU
267
C
GLU
93
HELX_P
A
THR
270
C
THR
96
5
2
4
A
GLU
272
C
GLU
98
HELX_P
A
GLU
285
C
GLU
111
1
3
14
A
ASN
288
C
ASN
114
HELX_P
A
ILE
293
C
ILE
119
1
4
6
A
THR
303
C
THR
129
HELX_P
A
GLN
318
C
GLN
144
1
5
16
A
LYS
321
C
LYS
147
HELX_P
A
TYR
338
C
TYR
164
1
6
18
A
PRO
379
C
PRO
205
HELX_P
A
ASP
381
C
ASP
207
5
7
3
A
ARG
434
C
ARG
260
HELX_P
A
ASP
464
C
ASP
290
1
8
31
A
VAL
472
C
VAL
298
HELX_P
A
LYS
484
C
LYS
310
1
9
13
A
CYS
504
C
CYS
330
HELX_P
A
SER
506
C
SER
332
5
10
3
A
VAL
509
C
VAL
335
HELX_P
A
HIS
511
C
HIS
337
5
11
3
A
LYS
532
C
LYS
358
HELX_P
A
SER
534
C
SER
360
5
12
3
A
LYS
545
C
LYS
371
HELX_P
A
MET
555
C
MET
381
1
13
11
A
THR
570
C
THR
396
HELX_P
A
LEU
580
C
LEU
406
1
14
11
A
ALA
586
C
ALA
412
HELX_P
A
LEU
605
C
LEU
431
1
15
20
A
ILE
612
C
ILE
438
HELX_P
A
LEU
629
C
LEU
455
1
16
18
A
SER
643
C
SER
469
HELX_P
A
VAL
674
C
VAL
500
1
17
32
A
LYS
679
C
LYS
505
HELX_P
A
GLU
710
C
GLU
536
1
18
32
A
SER
719
C
SER
545
HELX_P
A
ASN
722
C
ASN
548
1
19
4
A
PRO
726
C
PRO
552
HELX_P
A
TRP
736
C
TRP
562
5
20
11
A
ILE
740
C
ILE
566
HELX_P
A
LYS
742
C
LYS
568
5
21
3
A
LYS
746
C
LYS
572
HELX_P
A
LYS
751
C
LYS
577
1
22
6
A
ALA
753
C
ALA
579
HELX_P
A
ASP
757
C
ASP
583
1
23
5
hydrog
WATSON-CRICK
B
DA
2
A
N1
DA
2
1_555
C
DT
121
B
N3
DT
21
1_555
hydrog
WATSON-CRICK
B
DA
2
A
N6
DA
2
1_555
C
DT
121
B
O4
DT
21
1_555
hydrog
WATSON-CRICK
B
DA
3
A
N1
DA
3
1_555
C
DT
120
B
N3
DT
20
1_555
hydrog
WATSON-CRICK
B
DA
3
A
N6
DA
3
1_555
C
DT
120
B
O4
DT
20
1_555
hydrog
WATSON-CRICK
B
DA
4
A
N1
DA
4
1_555
C
DT
119
B
N3
DT
19
1_555
hydrog
WATSON-CRICK
B
DA
4
A
N6
DA
4
1_555
C
DT
119
B
O4
DT
19
1_555
hydrog
WATSON-CRICK
B
DA
5
A
N1
DA
5
1_555
C
DT
118
B
N3
DT
18
1_555
hydrog
WATSON-CRICK
B
DA
5
A
N6
DA
5
1_555
C
DT
118
B
O4
DT
18
1_555
hydrog
WATSON-CRICK
B
DG
6
A
N1
DG
6
1_555
C
DC
117
B
N3
DC
17
1_555
hydrog
WATSON-CRICK
B
DG
6
A
N2
DG
6
1_555
C
DC
117
B
O2
DC
17
1_555
hydrog
WATSON-CRICK
B
DG
6
A
O6
DG
6
1_555
C
DC
117
B
N4
DC
17
1_555
hydrog
WATSON-CRICK
B
DA
7
A
N1
DA
7
1_555
C
DT
116
B
N3
DT
16
1_555
hydrog
WATSON-CRICK
B
DA
7
A
N6
DA
7
1_555
C
DT
116
B
O4
DT
16
1_555
hydrog
WATSON-CRICK
B
DC
8
A
N3
DC
8
1_555
C
DG
115
B
N1
DG
15
1_555
hydrog
WATSON-CRICK
B
DC
8
A
N4
DC
8
1_555
C
DG
115
B
O6
DG
15
1_555
hydrog
WATSON-CRICK
B
DC
8
A
O2
DC
8
1_555
C
DG
115
B
N2
DG
15
1_555
hydrog
WATSON-CRICK
B
DT
9
A
N3
DT
9
1_555
C
DA
114
B
N1
DA
14
1_555
hydrog
WATSON-CRICK
B
DT
9
A
O4
DT
9
1_555
C
DA
114
B
N6
DA
14
1_555
hydrog
WATSON-CRICK
B
DT
10
A
N3
DT
10
1_555
C
DA
113
B
N1
DA
13
1_555
hydrog
WATSON-CRICK
B
DT
10
A
O4
DT
10
1_555
C
DA
113
B
N6
DA
13
1_555
hydrog
WATSON-CRICK
B
DA
11
A
N1
DA
11
1_555
C
DT
112
B
N3
DT
12
1_555
hydrog
WATSON-CRICK
B
DA
11
A
N6
DA
11
1_555
C
DT
112
B
O4
DT
12
1_555
hydrog
WATSON-CRICK
B
DG
12
A
N1
DG
12
1_555
C
DC
111
B
N3
DC
11
1_555
hydrog
WATSON-CRICK
B
DG
12
A
N2
DG
12
1_555
C
DC
111
B
O2
DC
11
1_555
hydrog
WATSON-CRICK
B
DG
12
A
O6
DG
12
1_555
C
DC
111
B
N4
DC
11
1_555
hydrog
WATSON-CRICK
B
DA
13
A
N1
DA
13
1_555
C
DT
110
B
N3
DT
10
1_555
hydrog
WATSON-CRICK
B
DA
13
A
N6
DA
13
1_555
C
DT
110
B
O4
DT
10
1_555
hydrog
WATSON-CRICK
B
DA
14
A
N1
DA
14
1_555
C
DT
109
B
N3
DT
9
1_555
hydrog
WATSON-CRICK
B
DA
14
A
N6
DA
14
1_555
C
DT
109
B
O4
DT
9
1_555
hydrog
WATSON-CRICK
B
DA
15
A
N1
DA
15
1_555
C
DT
108
B
N3
DT
8
1_555
hydrog
WATSON-CRICK
B
DA
15
A
N6
DA
15
1_555
C
DT
108
B
O4
DT
8
1_555
hydrog
WATSON-CRICK
B
DA
16
A
N1
DA
16
1_555
C
DT
107
B
N3
DT
7
1_555
hydrog
WATSON-CRICK
B
DA
16
A
N6
DA
16
1_555
C
DT
107
B
O4
DT
7
1_555
hydrog
WATSON-CRICK
B
DA
17
A
N1
DA
17
1_555
C
DT
106
B
N3
DT
6
1_555
hydrog
WATSON-CRICK
B
DA
17
A
N6
DA
17
1_555
C
DT
106
B
O4
DT
6
1_555
hydrog
WATSON-CRICK
B
DT
18
A
N3
DT
18
1_555
C
DA
105
B
N1
DA
5
1_555
hydrog
WATSON-CRICK
B
DT
18
A
O4
DT
18
1_555
C
DA
105
B
N6
DA
5
1_555
hydrog
WATSON-CRICK
B
DT
19
A
N3
DT
19
1_555
C
DA
104
B
N1
DA
4
1_555
hydrog
WATSON-CRICK
B
DT
19
A
O4
DT
19
1_555
C
DA
104
B
N6
DA
4
1_555
hydrog
WATSON-CRICK
B
DT
20
A
N3
DT
20
1_555
C
DA
103
B
N1
DA
3
1_555
hydrog
WATSON-CRICK
B
DT
20
A
O4
DT
20
1_555
C
DA
103
B
N6
DA
3
1_555
hydrog
WATSON-CRICK
B
DT
21
A
N3
DT
21
1_555
C
DA
102
B
N1
DA
2
1_555
hydrog
WATSON-CRICK
B
DT
21
A
O4
DT
21
1_555
C
DA
102
B
N6
DA
2
1_555
hydrog
WATSON-CRICK
B
DT
22
A
N3
DT
22
1_555
C
DA
101
B
N1
DA
1
1_555
hydrog
WATSON-CRICK
B
DT
22
A
O4
DT
22
1_555
C
DA
101
B
N6
DA
1
1_555
ISOMERASE/DNA
COMPLEX (ISOMERASE-DNA), DNA, TOPOISOMERASE I, ISOMERASE-DNA complex
TOP1_HUMAN
UNP
3
174
P11387
1A36
PDB
1
1A36
1A36
PDB
2
1A36
174
765
1A36
175
765
P11387
A
1
1
591
1
22
1A36
1
22
1A36
B
2
1
22
101
122
1A36
101
122
1A36
C
3
1
22
1
TYR
engineered mutation
PHE
723
1A36
A
P11387
UNP
723
549
2
2
2
2
3
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
A
PHE
240
C
PHE
66
A
TYR
242
C
TYR
68
A
LYS
245
C
LYS
71
A
MET
247
C
MET
73
A
PHE
340
C
PHE
166
A
MET
343
C
MET
169
A
HIS
346
C
HIS
172
A
ARG
349
C
ARG
175
A
ILE
383
C
ILE
209
A
ASN
385
C
ASN
211
A
GLU
403
C
GLU
229
A
ARG
405
C
ARG
231
A
VAL
414
C
VAL
240
A
THR
417
C
THR
243
A
ILE
424
C
ILE
250
A
ILE
427
C
ILE
253
A
ILE
512
C
ILE
338
A
HIS
515
C
HIS
341
A
VAL
524
C
VAL
350
A
LEU
530
C
LEU
356
A
ARG
536
C
ARG
362
A
PRO
542
C
PRO
368
4
P 1 21 1