17.44
8.316
21.206
21.530
A
N
PRO
1
ATOM
A
N
PRO
1
1
1.00
1
N
17.44
7.608
20.729
20.336
A
CA
PRO
1
ATOM
A
CA
PRO
1
1
1.00
1
C
17.44
8.487
20.707
19.092
A
C
PRO
1
ATOM
A
C
PRO
1
1
1.00
1
C
17.44
9.466
21.457
19.005
A
O
PRO
1
ATOM
A
O
PRO
1
1
1.00
1
O
22.26
6.460
21.723
20.211
A
CB
PRO
1
ATOM
A
CB
PRO
1
1
1.00
1
C
22.26
7.110
23.002
20.661
A
CG
PRO
1
ATOM
A
CG
PRO
1
1
1.00
1
C
22.26
7.873
22.569
21.889
A
CD
PRO
1
ATOM
A
CD
PRO
1
1
1.00
1
C
13.49
8.177
19.849
18.107
A
N
PRO
2
ATOM
A
N
PRO
1
2
1.00
1
N
13.49
9.057
19.896
16.936
A
CA
PRO
2
ATOM
A
CA
PRO
1
2
1.00
1
C
13.49
9.087
21.308
16.377
A
C
PRO
2
ATOM
A
C
PRO
1
2
1.00
1
C
13.49
8.318
22.186
16.816
A
O
PRO
2
ATOM
A
O
PRO
1
2
1.00
1
O
18.26
8.426
18.899
15.970
A
CB
PRO
2
ATOM
A
CB
PRO
1
2
1.00
1
C
18.26
7.776
17.914
16.886
A
CG
PRO
2
ATOM
A
CG
PRO
1
2
1.00
1
C
18.26
7.166
18.797
17.954
A
CD
PRO
2
ATOM
A
CD
PRO
1
2
1.00
1
C
12.07
9.981
21.517
15.426
A
N
GLY
3
ATOM
A
N
GLY
1
3
1.00
1
N
12.07
10.060
22.799
14.777
A
CA
GLY
3
ATOM
A
CA
GLY
1
3
1.00
1
C
12.07
9.119
22.720
13.589
A
C
GLY
3
ATOM
A
C
GLY
1
3
1.00
1
C
12.07
8.531
21.655
13.334
A
O
GLY
3
ATOM
A
O
GLY
1
3
1.00
1
O
14.22
8.954
23.832
12.847
A
N
PRO
4
ATOM
A
N
PRO
1
4
1.00
1
N
14.22
8.095
23.907
11.675
A
CA
PRO
4
ATOM
A
CA
PRO
1
4
1.00
1
C
14.22
8.733
23.310
10.437
A
C
PRO
4
ATOM
A
C
PRO
1
4
1.00
1
C
14.22
9.963
23.078
10.402
A
O
PRO
4
ATOM
A
O
PRO
1
4
1.00
1
O
8.61
7.863
25.403
11.527
A
CB
PRO
4
ATOM
A
CB
PRO
1
4
1.00
1
C
8.61
9.218
25.934
11.895
A
CG
PRO
4
ATOM
A
CG
PRO
1
4
1.00
1
C
8.61
9.530
25.158
13.143
A
CD
PRO
4
ATOM
A
CD
PRO
1
4
1.00
1
C
14.03
7.918
23.027
9.412
A
N
PRO
5
ATOM
A
N
PRO
1
5
1.00
1
N
14.03
8.416
22.493
8.135
A
CA
PRO
5
ATOM
A
CA
PRO
1
5
1.00
1
C
14.03
9.621
23.306
7.672
A
C
PRO
5
ATOM
A
C
PRO
1
5
1.00
1
C
14.03
9.876
24.379
8.181
A
O
PRO
5
ATOM
A
O
PRO
1
5
1.00
1
O
10.90
7.229
22.641
7.193
A
CB
PRO
5
ATOM
A
CB
PRO
1
5
1.00
1
C
10.90
6.082
22.382
8.123
A
CG
PRO
5
ATOM
A
CG
PRO
1
5
1.00
1
C
10.90
6.452
23.069
9.415
A
CD
PRO
5
ATOM
A
CD
PRO
1
5
1.00
1
C
10.80
10.369
22.765
6.725
A
N
GLY
6
ATOM
A
N
GLY
1
6
1.00
1
N
10.80
11.517
23.464
6.204
A
CA
GLY
6
ATOM
A
CA
GLY
1
6
1.00
1
C
10.80
11.139
24.138
4.928
A
C
GLY
6
ATOM
A
C
GLY
1
6
1.00
1
C
10.80
10.028
23.948
4.418
A
O
GLY
6
ATOM
A
O
GLY
1
6
1.00
1
O
11.55
12.050
24.922
4.355
A
N
PRO
7
ATOM
A
N
PRO
1
7
1.00
1
N
11.55
11.797
25.641
3.111
A
CA
PRO
7
ATOM
A
CA
PRO
1
7
1.00
1
C
11.55
11.484
24.709
1.970
A
C
PRO
7
ATOM
A
C
PRO
1
7
1.00
1
C
11.55
11.783
23.500
2.038
A
O
PRO
7
ATOM
A
O
PRO
1
7
1.00
1
O
10.61
13.091
26.440
2.901
A
CB
PRO
7
ATOM
A
CB
PRO
1
7
1.00
1
C
10.61
14.119
25.540
3.516
A
CG
PRO
7
ATOM
A
CG
PRO
1
7
1.00
1
C
10.61
13.456
25.102
4.796
A
CD
PRO
7
ATOM
A
CD
PRO
1
7
1.00
1
C
14.31
10.853
25.225
0.900
A
N
PRO
8
ATOM
A
N
PRO
1
8
1.00
1
N
14.31
10.571
24.322
-0.220
A
CA
PRO
8
ATOM
A
CA
PRO
1
8
1.00
1
C
14.31
11.897
23.973
-0.901
A
C
PRO
8
ATOM
A
C
PRO
1
8
1.00
1
C
14.31
12.973
24.425
-0.473
A
O
PRO
8
ATOM
A
O
PRO
1
8
1.00
1
O
16.14
9.623
25.131
-1.124
A
CB
PRO
8
ATOM
A
CB
PRO
1
8
1.00
1
C
16.14
9.080
26.188
-0.206
A
CG
PRO
8
ATOM
A
CG
PRO
1
8
1.00
1
C
16.14
10.279
26.556
0.633
A
CD
PRO
8
ATOM
A
CD
PRO
1
8
1.00
1
C
11.65
11.816
23.125
-1.918
A
N
GLY
9
ATOM
A
N
GLY
1
9
1.00
1
N
11.65
12.996
22.720
-2.639
A
CA
GLY
9
ATOM
A
CA
GLY
1
9
1.00
1
C
11.65
13.234
23.577
-3.852
A
C
GLY
9
ATOM
A
C
GLY
1
9
1.00
1
C
11.65
12.433
24.459
-4.180
A
O
GLY
9
ATOM
A
O
GLY
1
9
1.00
1
O
8.71
12.731
18.403
18.599
B
N
PRO
31
ATOM
B
N
PRO
2
1
1.00
1
N
8.71
13.374
17.891
17.389
B
CA
PRO
31
ATOM
B
CA
PRO
2
1
1.00
1
C
8.71
13.142
18.745
16.166
B
C
PRO
31
ATOM
B
C
PRO
2
1
1.00
1
C
8.71
12.207
19.526
16.121
B
O
PRO
31
ATOM
B
O
PRO
2
1
1.00
1
O
15.38
12.784
16.471
17.255
B
CB
PRO
31
ATOM
B
CB
PRO
2
1
1.00
1
C
15.38
11.434
16.598
17.873
B
CG
PRO
31
ATOM
B
CG
PRO
2
1
1.00
1
C
15.38
11.660
17.490
19.065
B
CD
PRO
31
ATOM
B
CD
PRO
2
1
1.00
1
C
13.67
14.011
18.647
15.178
B
N
PRO
32
ATOM
B
N
PRO
2
2
1.00
1
N
13.67
13.833
19.426
13.967
B
CA
PRO
32
ATOM
B
CA
PRO
2
2
1.00
1
C
13.67
12.523
19.099
13.336
B
C
PRO
32
ATOM
B
C
PRO
2
2
1.00
1
C
13.67
12.038
17.968
13.473
B
O
PRO
32
ATOM
B
O
PRO
2
2
1.00
1
O
9.03
15.025
19.023
13.125
B
CB
PRO
32
ATOM
B
CB
PRO
2
2
1.00
1
C
9.03
16.077
18.799
14.163
B
CG
PRO
32
ATOM
B
CG
PRO
2
2
1.00
1
C
9.03
15.320
17.975
15.152
B
CD
PRO
32
ATOM
B
CD
PRO
2
2
1.00
1
C
14.26
11.928
20.070
12.640
B
N
GLY
33
ATOM
B
N
GLY
2
3
1.00
1
N
14.26
10.661
19.801
12.008
B
CA
GLY
33
ATOM
B
CA
GLY
2
3
1.00
1
C
14.26
10.802
18.911
10.797
B
C
GLY
33
ATOM
B
C
GLY
2
3
1.00
1
C
14.26
11.882
18.368
10.516
B
O
GLY
33
ATOM
B
O
GLY
2
3
1.00
1
O
11.50
9.708
18.736
10.046
B
N
PRO
34
ATOM
B
N
PRO
2
4
1.00
1
N
11.50
9.665
17.922
8.836
B
CA
PRO
34
ATOM
B
CA
PRO
2
4
1.00
1
C
11.50
10.227
18.620
7.654
B
C
PRO
34
ATOM
B
C
PRO
2
4
1.00
1
C
11.50
10.284
19.836
7.639
B
O
PRO
34
ATOM
B
O
PRO
2
4
1.00
1
O
9.66
8.192
17.649
8.657
B
CB
PRO
34
ATOM
B
CB
PRO
2
4
1.00
1
C
9.66
7.586
18.930
9.132
B
CG
PRO
34
ATOM
B
CG
PRO
2
4
1.00
1
C
9.66
8.350
19.245
10.373
B
CD
PRO
34
ATOM
B
CD
PRO
2
4
1.00
1
C
16.25
10.677
17.860
6.651
B
N
PRO
35
ATOM
B
N
PRO
2
5
1.00
1
N
16.25
11.228
18.392
5.413
B
CA
PRO
35
ATOM
B
CA
PRO
2
5
1.00
1
C
16.25
10.219
19.317
4.794
B
C
PRO
35
ATOM
B
C
PRO
2
5
1.00
1
C
16.25
9.010
19.249
5.127
B
O
PRO
35
ATOM
B
O
PRO
2
5
1.00
1
O
10.89
11.468
17.160
4.542
B
CB
PRO
35
ATOM
B
CB
PRO
2
5
1.00
1
C
10.89
11.668
16.066
5.531
B
CG
PRO
35
ATOM
B
CG
PRO
2
5
1.00
1
C
10.89
10.798
16.385
6.703
B
CD
PRO
35
ATOM
B
CD
PRO
2
5
1.00
1
C
19.34
10.709
20.223
3.948
B
N
GLY
36
ATOM
B
N
GLY
2
6
1.00
1
N
19.34
9.836
21.154
3.260
B
CA
GLY
36
ATOM
B
CA
GLY
2
6
1.00
1
C
19.34
9.207
20.491
2.050
B
C
GLY
36
ATOM
B
C
GLY
2
6
1.00
1
C
19.34
9.565
19.355
1.710
B
O
GLY
36
ATOM
B
O
GLY
2
6
1.00
1
O
10.63
14.309
23.332
15.622
C
N
PRO
61
ATOM
C
N
PRO
2
1
1.00
1
N
10.63
14.643
24.095
14.422
C
CA
PRO
61
ATOM
C
CA
PRO
2
1
1.00
1
C
10.63
13.859
23.751
13.161
C
C
PRO
61
ATOM
C
C
PRO
2
1
1.00
1
C
10.63
13.189
22.726
13.091
C
O
PRO
61
ATOM
C
O
PRO
2
1
1.00
1
O
19.41
16.144
23.846
14.270
C
CB
PRO
61
ATOM
C
CB
PRO
2
1
1.00
1
C
19.41
16.308
22.475
14.820
C
CG
PRO
61
ATOM
C
CG
PRO
2
1
1.00
1
C
19.41
15.451
22.510
16.056
C
CD
PRO
61
ATOM
C
CD
PRO
2
1
1.00
1
C
15.75
13.910
24.631
12.163
C
N
PRO
62
ATOM
C
N
PRO
2
2
1.00
1
N
15.75
13.234
24.402
10.876
C
CA
PRO
62
ATOM
C
CA
PRO
2
2
1.00
1
C
15.75
13.686
23.039
10.262
C
C
PRO
62
ATOM
C
C
PRO
2
2
1.00
1
C
15.75
14.874
22.653
10.369
C
O
PRO
62
ATOM
C
O
PRO
2
2
1.00
1
O
9.87
13.668
25.600
10.024
C
CB
PRO
62
ATOM
C
CB
PRO
2
2
1.00
1
C
9.87
13.859
26.675
11.052
C
CG
PRO
62
ATOM
C
CG
PRO
2
2
1.00
1
C
9.87
14.515
25.976
12.213
C
CD
PRO
62
ATOM
C
CD
PRO
2
2
1.00
1
C
16.50
12.761
22.316
9.639
C
N
GLY
63
ATOM
C
N
GLY
2
3
1.00
1
N
16.50
13.167
21.066
9.028
C
CA
GLY
63
ATOM
C
CA
GLY
2
3
1.00
1
C
16.50
14.105
21.312
7.849
C
C
GLY
63
ATOM
C
C
GLY
2
3
1.00
1
C
16.50
14.435
22.472
7.518
C
O
GLY
63
ATOM
C
O
GLY
2
3
1.00
1
O
15.53
14.571
20.246
7.184
C
N
PRO
64
ATOM
C
N
PRO
2
4
1.00
1
N
15.53
15.458
20.417
6.037
C
CA
PRO
64
ATOM
C
CA
PRO
2
4
1.00
1
C
15.53
14.684
20.927
4.823
C
C
PRO
64
ATOM
C
C
PRO
2
4
1.00
1
C
15.53
13.463
20.829
4.772
C
O
PRO
64
ATOM
C
O
PRO
2
4
1.00
1
O
5.63
16.001
19.018
5.816
C
CB
PRO
64
ATOM
C
CB
PRO
2
4
1.00
1
C
5.63
14.806
18.201
6.163
C
CG
PRO
64
ATOM
C
CG
PRO
2
4
1.00
1
C
5.63
14.354
18.810
7.450
C
CD
PRO
64
ATOM
C
CD
PRO
2
4
1.00
1
C
10.50
15.378
21.485
3.840
C
N
PRO
65
ATOM
C
N
PRO
2
5
1.00
1
N
10.50
14.622
21.927
2.689
C
CA
PRO
65
ATOM
C
CA
PRO
2
5
1.00
1
C
10.50
14.079
20.706
1.955
C
C
PRO
65
ATOM
C
C
PRO
2
5
1.00
1
C
10.50
14.505
19.531
2.221
C
O
PRO
65
ATOM
C
O
PRO
2
5
1.00
1
O
11.55
15.615
22.734
1.892
C
CB
PRO
65
ATOM
C
CB
PRO
2
5
1.00
1
C
11.55
16.951
22.189
2.279
C
CG
PRO
65
ATOM
C
CG
PRO
2
5
1.00
1
C
11.55
16.808
21.850
3.742
C
CD
PRO
65
ATOM
C
CD
PRO
2
5
1.00
1
C
9.96
13.102
20.952
1.076
C
N
GLY
66
ATOM
C
N
GLY
2
6
1.00
1
N
9.96
12.479
19.874
0.334
C
CA
GLY
66
ATOM
C
CA
GLY
2
6
1.00
1
C
9.96
13.226
19.430
-0.900
C
C
GLY
66
ATOM
C
C
GLY
2
6
1.00
1
C
9.96
14.206
20.054
-1.286
C
O
GLY
66
ATOM
C
O
GLY
2
6
1.00
1
O
21.19
3.682
22.541
11.236
A
C
ACY
401
HETATM
D
C
ACY
3
1.00
1
C
21.19
2.807
23.097
10.553
A
O
ACY
401
HETATM
D
O
ACY
3
1.00
1
O
21.19
4.306
23.101
12.291
A
OXT
ACY
401
HETATM
D
OXT
ACY
3
1.00
1
O
21.19
4.134
21.141
10.915
A
CH3
ACY
401
HETATM
D
CH3
ACY
3
1.00
1
C
38.32
19.091
22.160
7.837
C
C
ACY
402
HETATM
E
C
ACY
3
1.00
1
C
38.32
19.334
21.755
6.694
C
O
ACY
402
HETATM
E
O
ACY
3
1.00
1
O
38.32
18.633
21.338
8.768
C
OXT
ACY
402
HETATM
E
OXT
ACY
3
1.00
1
O
38.32
19.293
23.618
8.266
C
CH3
ACY
402
HETATM
E
CH3
ACY
3
1.00
1
C
28.97
5.594
21.889
15.805
A
O
HOH
101
HETATM
F
O
HOH
4
1.00
1
O
22.47
7.355
25.253
16.293
A
O
HOH
102
HETATM
F
O
HOH
4
1.00
1
O
29.02
6.457
20.993
12.327
A
O
HOH
103
HETATM
F
O
HOH
4
1.00
1
O
30.44
7.423
26.270
8.119
A
O
HOH
104
HETATM
F
O
HOH
4
1.00
1
O
23.32
11.373
26.588
6.950
A
O
HOH
105
HETATM
F
O
HOH
4
1.00
1
O
5.05
7.408
25.371
4.091
A
O
HOH
106
HETATM
F
O
HOH
4
1.00
1
O
21.02
13.153
27.296
-0.172
A
O
HOH
107
HETATM
F
O
HOH
4
1.00
1
O
11.17
15.664
24.810
-1.390
A
O
HOH
108
HETATM
F
O
HOH
4
1.00
1
O
9.23
12.152
26.921
-4.540
A
O
HOH
109
HETATM
F
O
HOH
4
1.00
1
O
14.40
5.473
23.666
4.098
A
O
HOH
201
HETATM
F
O
HOH
4
1.00
1
O
7.43
4.187
25.027
5.974
A
O
HOH
204
HETATM
F
O
HOH
4
1.00
1
O
23.97
17.417
23.063
-0.970
A
O
HOH
209
HETATM
F
O
HOH
4
1.00
1
O
17.32
3.280
23.836
8.294
A
O
HOH
218
HETATM
F
O
HOH
4
1.00
1
O
26.00
16.159
26.500
-3.605
A
O
HOH
220
HETATM
F
O
HOH
4
1.00
1
O
16.81
17.060
26.756
1.465
A
O
HOH
241
HETATM
F
O
HOH
4
1.00
1
O
21.62
9.783
28.384
5.130
A
O
HOH
244
HETATM
F
O
HOH
4
1.00
1
O
23.05
10.552
28.648
13.053
A
O
HOH
245
HETATM
F
O
HOH
4
1.00
1
O
13.59
13.443
15.615
12.881
B
O
HOH
111
HETATM
G
O
HOH
4
1.00
1
O
27.99
9.758
16.818
12.994
B
O
HOH
112
HETATM
G
O
HOH
4
1.00
1
O
23.25
12.963
16.325
9.228
B
O
HOH
113
HETATM
G
O
HOH
4
1.00
1
O
24.12
5.878
20.610
4.485
B
O
HOH
115
HETATM
G
O
HOH
4
1.00
1
O
47.48
8.848
16.145
2.532
B
O
HOH
116
HETATM
G
O
HOH
4
1.00
1
O
23.11
6.144
15.504
5.728
B
O
HOH
242
HETATM
G
O
HOH
4
1.00
1
O
28.60
9.269
14.976
15.672
B
O
HOH
246
HETATM
G
O
HOH
4
1.00
1
O
26.87
6.015
15.569
15.283
B
O
HOH
247
HETATM
G
O
HOH
4
1.00
1
O
27.03
18.638
24.296
11.397
C
O
HOH
121
HETATM
H
O
HOH
4
1.00
1
O
25.94
16.444
20.463
10.447
C
O
HOH
122
HETATM
H
O
HOH
4
1.00
1
O
19.70
16.295
24.230
6.930
C
O
HOH
123
HETATM
H
O
HOH
4
1.00
1
O
31.73
17.331
17.619
2.413
C
O
HOH
124
HETATM
H
O
HOH
4
1.00
1
O
53.43
13.985
16.977
0.817
C
O
HOH
125
HETATM
H
O
HOH
4
1.00
1
O
9.43
16.914
19.363
-0.910
C
O
HOH
126
HETATM
H
O
HOH
4
1.00
1
O
17.29
21.595
24.992
9.644
C
O
HOH
202
HETATM
H
O
HOH
4
1.00
1
O
7.90
13.466
14.688
2.583
C
O
HOH
205
HETATM
H
O
HOH
4
1.00
1
O
22.05
16.622
16.376
-0.560
C
O
HOH
208
HETATM
H
O
HOH
4
1.00
1
O
20.07
17.034
27.356
9.718
C
O
HOH
210
HETATM
H
O
HOH
4
1.00
1
O
13.40
18.532
26.812
12.585
C
O
HOH
243
HETATM
H
O
HOH
4
1.00
1
O
22.69
20.598
27.021
8.450
C
O
HOH
248
HETATM
H
O
HOH
4
1.00
1
O
0.037286
0.000000
0.000000
0.000000
0.038037
0.000000
0.000000
0.000000
0.049554
0.00000
0.00000
0.00000
Kramer, R.Z.
Vitagliano, L.
Bella, J.
Berisio, R.
Mazzarella, L.
Brodsky, B.
Zagari, A.
Berman, H.M.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.00
90.00
90.00
26.820
26.290
20.180
C2 H4 O2
60.052
ACETIC ACID
non-polymer
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
H2 O
18.015
WATER
non-polymer
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
N
1
N
C
N
2
N
O
N
3
N
O
N
4
N
C
N
5
N
H
N
6
N
H
N
7
N
H
N
8
N
H
N
9
N
N
N
10
N
C
N
11
N
C
N
12
N
O
N
13
N
O
N
14
N
H
N
15
N
H
N
16
N
H
N
17
N
H
N
18
N
H
N
19
N
O
N
20
N
H
N
21
N
H
N
22
N
N
N
23
S
C
N
24
N
C
N
25
N
O
N
26
N
C
N
27
N
C
N
28
N
C
N
29
N
O
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
1
N
doub
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
sing
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
doub
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
sing
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
doub
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
sing
N
34
N
sing
N
35
N
sing
UK
J.Mol.Biol.
JMOBAK
0070
0022-2836
280
623
638
10.1006/jmbi.1998.1881
9677293
X-ray crystallographic determination of a collagen-like peptide with the repeating sequence (Pro-Pro-Gly).
1998
10.2210/pdb1a3i/pdb
pdb_00001a3i
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
0.00000
0.00000
20.18000
259.0
1
DIFFRACTOMETER
1991-10
ENRAF-NONIUS FAST
M
x-ray
1
1.5418
1.0
1.5418
771.859
COLLAGEN-LIKE PEPTIDE
1
man
polymer
520.578
COLLAGEN-LIKE PEPTIDE
2
man
polymer
60.052
ACETIC ACID
2
syn
non-polymer
18.015
water
37
nat
water
no
no
PPGPPGPPG
PPGPPGPPG
A
polypeptide(L)
no
no
PPGPPG
PPGPPG
B,C
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
1
1.95
36.82
PEPTIDE WAS CRYSTALLIZED FROM 4.0 MG/ML PEPTIDE IN 10% ACETIC ACID, 0.1% SODIUM AZIDE, AND 3.0% PEG400.
diffrn_detector
pdbx_database_status
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
struct_conn
struct_site
repository
Initial release
Version format compliance
Version format compliance
Data collection
Other
Data collection
Database references
Derived calculations
Refinement description
1
0
1998-05-06
1
1
2008-03-24
1
2
2011-07-13
1
3
2018-04-18
1
4
2024-04-03
_diffrn_detector.detector
_pdbx_database_status.process_site
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_symmetry
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
Y
BNL
1998-01-22
REL
REL
ACY
ACETIC ACID
HOH
water
HYDROGEN BONDS BETWEEN PEPTIDE CHAINS FOLLOW THE RICH AND
CRICK MODEL II FOR COLLAGEN.
FOR EACH CHAIN, RESIDUE NUMBERING CORRESPONDS TO THE ENTIRE
MOLECULE RATHER THAN THE SHORTER ASYMMETRIC UNIT.
IDEALIZED SEVEN-FOLD TRIPLE-HELIX
Other
in silico model
ACY
401
3
ACY
ACY
401
A
ACY
402
3
ACY
ACY
402
C
HOH
101
4
HOH
HOH
101
A
HOH
102
4
HOH
HOH
102
A
HOH
103
4
HOH
HOH
103
A
HOH
104
4
HOH
HOH
104
A
HOH
105
4
HOH
HOH
105
A
HOH
106
4
HOH
HOH
106
A
HOH
107
4
HOH
HOH
107
A
HOH
108
4
HOH
HOH
108
A
HOH
109
4
HOH
HOH
109
A
HOH
201
4
HOH
HOH
201
A
HOH
204
4
HOH
HOH
204
A
HOH
209
4
HOH
HOH
209
A
HOH
218
4
HOH
HOH
218
A
HOH
220
4
HOH
HOH
220
A
HOH
241
4
HOH
HOH
241
A
HOH
244
4
HOH
HOH
244
A
HOH
245
4
HOH
HOH
245
A
HOH
111
4
HOH
HOH
111
B
HOH
112
4
HOH
HOH
112
B
HOH
113
4
HOH
HOH
113
B
HOH
115
4
HOH
HOH
115
B
HOH
116
4
HOH
HOH
116
B
HOH
242
4
HOH
HOH
242
B
HOH
246
4
HOH
HOH
246
B
HOH
247
4
HOH
HOH
247
B
HOH
121
4
HOH
HOH
121
C
HOH
122
4
HOH
HOH
122
C
HOH
123
4
HOH
HOH
123
C
HOH
124
4
HOH
HOH
124
C
HOH
125
4
HOH
HOH
125
C
HOH
126
4
HOH
HOH
126
C
HOH
202
4
HOH
HOH
202
C
HOH
205
4
HOH
HOH
205
C
HOH
208
4
HOH
HOH
208
C
HOH
210
4
HOH
HOH
210
C
HOH
243
4
HOH
HOH
243
C
HOH
248
4
HOH
HOH
248
C
PRO
1
n
1
PRO
1
A
PRO
2
n
2
PRO
2
A
GLY
3
n
3
GLY
3
A
PRO
4
n
4
PRO
4
A
PRO
5
n
5
PRO
5
A
GLY
6
n
6
GLY
6
A
PRO
7
n
7
PRO
7
A
PRO
8
n
8
PRO
8
A
GLY
9
n
9
GLY
9
A
PRO
31
n
1
PRO
31
B
PRO
32
n
2
PRO
32
B
GLY
33
n
3
GLY
33
B
PRO
34
n
4
PRO
34
B
PRO
35
n
5
PRO
35
B
GLY
36
n
6
GLY
36
B
PRO
61
n
1
PRO
61
C
PRO
62
n
2
PRO
62
C
GLY
63
n
3
GLY
63
C
PRO
64
n
4
PRO
64
C
PRO
65
n
5
PRO
65
C
GLY
66
n
6
GLY
66
C
author_defined_assembly
15
pentadecameric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_556
x,y,z+1
crystal symmetry operation
0.0000000000
0.0000000000
20.1800000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_557
x,y,z+2
crystal symmetry operation
0.0000000000
0.0000000000
40.3600000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_558
x,y,z+3
crystal symmetry operation
0.0000000000
0.0000000000
60.5400000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_559
x,y,z+4
crystal symmetry operation
0.0000000000
0.0000000000
80.7200000000
1
A
PRO
2
-56.35
171.52
1
A
PRO
5
-47.11
164.30
PARHCSDX.PRO
TOPHCSDX.PRO
15.9
DUE TO THE QUASI-INFINITE, AVERAGED NATURE OF THE TRIPLE HELIX, DURING REFINEMENT COVALENT BONDS ARE NECESSARY TO JOIN THE MOLECULE WITH ITS SYMMETRY MATES BOTH ABOVE IT AND BELOW IT ALONG THE HELICAL AXIS AND TIGHT REFINEMENT CONSTRAINTS WERE MAINTAINED.
THE UNIT CELL AXES WERE CHOSEN TO COINCIDE WITH A
PREVIOUS STRUCTURE DETERMINATION (OKUYAMA 1981) OF THIS
PEPTIDE.
0.1810000
0.1810000
1.97
8.
861
76.7
1000000.
0.1
1
GROUP
2.
MOLECULAR REPLACEMENT
IDEALIZED SEVEN-FOLD TRIPLE-HELIX
1.97
8.
45
171
0
0
126
0.01
2.07
2.11
0.2200000
2.04
69
10
63.3
1.97
1A3I
1136
0.
1
99.5
1.97
2.2
98.
model building
X-PLOR
3.1
refinement
LALS
data reduction
MOLEN
phasing
X-PLOR
3.1
refinement
X-PLOR
X-RAY CRYSTALLOGRAPHIC DETERMINATION OF A COLLAGEN-LIKE PEPTIDE WITH THE REPEATING SEQUENCE (PRO-PRO-GLY)
1
N
N
2
N
N
2
N
N
3
N
N
3
N
N
4
N
N
4
N
N
4
N
N
THE 21 RESIDUE ASYMMETRIC UNIT CORRESPONDS TO ONE
TRIPLE-HELICAL REPEAT AND IS SMALLER THAN THE ENTIRE 90
RESIDUE PEPTIDE DUE TO TRANSLATIONAL DISORDER ALONG THE
HELICAL AXIS. THE RESULT IS A POLYMER-LIKE STRUCTURE WITH
NO DEFINED ENDS.
THE POLYMER STRUCTURE IS FORMED BY CONTINUATION OF THE
CHAINS USING THE SYMMETRY-RELATED MOLECULES ALONG THE
HELICAL AXIS. THE TVECT RECORD BELOW PRESENTS THE
TRANSLATION THAT WILL GENERATE THE POLYMER. NOTE:
THEREFORE, CLOSE CONTACTS BETWEEN SYMMETRY-RELATED
MOLECULES ARE INTENTIONAL AND NECESSARY. INTERCHAIN
HYDROGEN BONDING AT THE END OF CHAINS ALSO UTILIZES
SYMMETRY-RELATED MOLECULES.
THE ENTIRE 30 RESIDUE LONG PEPTIDE CAN BE GENERATED FROM
THE SUBMITTED ASYMMETRIC UNIT BY APPLYING THE FOLLOWING
TRANSLATIONS (USING FRACTIONAL COORDINATES):
CHAIN A: TRANSLATE RESIDUES 1 - 9 BY (0 0 1), (0 0 2), AND
(0 0 3) AND RESIDUES 7 - 9 BY (0 0 4).
CHAIN B: TRANSLATE RESIDUES 31 - 36 BY (0 0 1), (0 0 2),
AND (0 0 3).
CHAIN C: TRANSLATE RESIDUES 61 - 66 BY (0 0 1), (0 0 2),
AND (0 0 3) AND RESIDUES 64 - 66 BY (004).
THIS WILL RESULT IN A MOLECULE WITH A TOTAL OF 90 RESIDUES,
30 IN EACH CHAIN.
covale
1.340
both
A
PRO
1
A
N
PRO
1
1_555
B
GLY
36
B
C
GLY
6
1_556
covale
1.309
both
A
GLY
9
A
C
GLY
9
1_556
C
PRO
61
C
N
PRO
1
1_555
covale
1.328
both
B
PRO
31
B
N
PRO
1
1_555
C
GLY
66
C
C
GLY
6
1_556
EXTRACELLULAR MATRIX
COLLAGEN, EXTRACELLULAR MATRIX
1A3I
PDB
1
1A3I
1A3I
PDB
2
1A3I
1
9
1A3I
1
9
1A3I
A
1
1
9
31
36
1A3I
31
36
1A3I
B
2
1
6
61
66
1A3I
61
66
1A3I
C
2
1
6
BINDING SITE FOR RESIDUE ACY A 401
A
ACY
401
Software
7
BINDING SITE FOR RESIDUE ACY C 402
C
ACY
402
Software
5
A
PRO
5
A
PRO
5
7
1_555
A
PRO
8
A
PRO
8
7
2_575
A
HOH
103
F
HOH
7
1_555
A
HOH
218
F
HOH
7
1_555
C
PRO
64
C
PRO
4
7
4_466
C
HOH
122
H
HOH
7
4_466
C
ACY
402
E
ACY
7
4_466
A
ACY
401
D
ACY
5
4_566
B
PRO
34
B
PRO
4
5
4_566
B
HOH
247
G
HOH
5
4_566
C
HOH
122
H
HOH
5
1_555
C
HOH
202
H
HOH
5
1_555
19
P 21 21 21