0.013532
0.000000
0.000000
0.000000
0.013532
0.000000
0.000000
0.000000
0.023310
0.00000
0.00000
0.00000
Naismith, J.H.
Giraud, M.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.00
90.00
90.00
73.900
73.900
42.900
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
DK
Acta Crystallogr.,Sect.D
ABCRE6
0766
0907-4449
54
891
898
10.1107/S0907444998002480
9757105
Structure of ubiquitin-conjugating enzyme 9 displays significant differences with other ubiquitin-conjugating enzymes which may reflect its specificity for sumo rather than ubiquitin.
1998
To be Published
0353
The Structure of Ubch9: A Sumo Conjugating Enzyme
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
298
1
MIRRORS
IMAGE PLATE
1997-08
BRUKER NONIUS
NI FILTER
M
x-ray
1
1.5418
1.0
1.5418
ROTATING ANODE
ENRAF-NONIUS FR591
18174.945
UBC9
6.3.2.19
1
man
polymer
UBCH9, UBE9, UBCI
no
no
GSMSGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFE
PPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVRAQAKKFAPS
GSMSGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFE
PPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVRAQAKKFAPS
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
human
Homo
Escherichia
sample
GST-FUSION
9606
Homo sapiens
562
Escherichia coli
1
3.22
61.80
7.
pH 7.
repository
Initial release
Version format compliance
Version format compliance
1
0
1998-05-27
1
1
2008-03-24
1
2
2011-07-13
Y
BNL
1998-01-23
REL
REL
n
1
-1
A
n
2
0
A
MET
1
n
3
MET
1
A
SER
2
n
4
SER
2
A
GLY
3
n
5
GLY
3
A
ILE
4
n
6
ILE
4
A
ALA
5
n
7
ALA
5
A
LEU
6
n
8
LEU
6
A
SER
7
n
9
SER
7
A
ARG
8
n
10
ARG
8
A
LEU
9
n
11
LEU
9
A
ALA
10
n
12
ALA
10
A
GLN
11
n
13
GLN
11
A
GLU
12
n
14
GLU
12
A
ARG
13
n
15
ARG
13
A
LYS
14
n
16
LYS
14
A
ALA
15
n
17
ALA
15
A
TRP
16
n
18
TRP
16
A
ARG
17
n
19
ARG
17
A
LYS
18
n
20
LYS
18
A
ASP
19
n
21
ASP
19
A
HIS
20
n
22
HIS
20
A
PRO
21
n
23
PRO
21
A
PHE
22
n
24
PHE
22
A
GLY
23
n
25
GLY
23
A
PHE
24
n
26
PHE
24
A
VAL
25
n
27
VAL
25
A
ALA
26
n
28
ALA
26
A
VAL
27
n
29
VAL
27
A
PRO
28
n
30
PRO
28
A
THR
29
n
31
THR
29
A
LYS
30
n
32
LYS
30
A
ASN
31
n
33
ASN
31
A
PRO
32
n
34
PRO
32
A
ASP
33
n
35
ASP
33
A
GLY
34
n
36
GLY
34
A
THR
35
n
37
THR
35
A
MET
36
n
38
MET
36
A
ASN
37
n
39
ASN
37
A
LEU
38
n
40
LEU
38
A
MET
39
n
41
MET
39
A
ASN
40
n
42
ASN
40
A
TRP
41
n
43
TRP
41
A
GLU
42
n
44
GLU
42
A
CYS
43
n
45
CYS
43
A
ALA
44
n
46
ALA
44
A
ILE
45
n
47
ILE
45
A
PRO
46
n
48
PRO
46
A
GLY
47
n
49
GLY
47
A
LYS
48
n
50
LYS
48
A
LYS
49
n
51
LYS
49
A
GLY
50
n
52
GLY
50
A
THR
51
n
53
THR
51
A
PRO
52
n
54
PRO
52
A
TRP
53
n
55
TRP
53
A
GLU
54
n
56
GLU
54
A
GLY
55
n
57
GLY
55
A
GLY
56
n
58
GLY
56
A
LEU
57
n
59
LEU
57
A
PHE
58
n
60
PHE
58
A
LYS
59
n
61
LYS
59
A
LEU
60
n
62
LEU
60
A
ARG
61
n
63
ARG
61
A
MET
62
n
64
MET
62
A
LEU
63
n
65
LEU
63
A
PHE
64
n
66
PHE
64
A
LYS
65
n
67
LYS
65
A
ASP
66
n
68
ASP
66
A
ASP
67
n
69
ASP
67
A
TYR
68
n
70
TYR
68
A
PRO
69
n
71
PRO
69
A
SER
70
n
72
SER
70
A
SER
71
n
73
SER
71
A
PRO
72
n
74
PRO
72
A
PRO
73
n
75
PRO
73
A
LYS
74
n
76
LYS
74
A
CYS
75
n
77
CYS
75
A
LYS
76
n
78
LYS
76
A
PHE
77
n
79
PHE
77
A
GLU
78
n
80
GLU
78
A
PRO
79
n
81
PRO
79
A
PRO
80
n
82
PRO
80
A
LEU
81
n
83
LEU
81
A
PHE
82
n
84
PHE
82
A
HIS
83
n
85
HIS
83
A
PRO
84
n
86
PRO
84
A
ASN
85
n
87
ASN
85
A
VAL
86
n
88
VAL
86
A
TYR
87
n
89
TYR
87
A
PRO
88
n
90
PRO
88
A
SER
89
n
91
SER
89
A
GLY
90
n
92
GLY
90
A
THR
91
n
93
THR
91
A
VAL
92
n
94
VAL
92
A
CYS
93
n
95
CYS
93
A
LEU
94
n
96
LEU
94
A
SER
95
n
97
SER
95
A
ILE
96
n
98
ILE
96
A
LEU
97
n
99
LEU
97
A
GLU
98
n
100
GLU
98
A
GLU
99
n
101
GLU
99
A
ASP
100
n
102
ASP
100
A
LYS
101
n
103
LYS
101
A
ASP
102
n
104
ASP
102
A
TRP
103
n
105
TRP
103
A
ARG
104
n
106
ARG
104
A
PRO
105
n
107
PRO
105
A
ALA
106
n
108
ALA
106
A
ILE
107
n
109
ILE
107
A
THR
108
n
110
THR
108
A
ILE
109
n
111
ILE
109
A
LYS
110
n
112
LYS
110
A
GLN
111
n
113
GLN
111
A
ILE
112
n
114
ILE
112
A
LEU
113
n
115
LEU
113
A
LEU
114
n
116
LEU
114
A
GLY
115
n
117
GLY
115
A
ILE
116
n
118
ILE
116
A
GLN
117
n
119
GLN
117
A
GLU
118
n
120
GLU
118
A
LEU
119
n
121
LEU
119
A
LEU
120
n
122
LEU
120
A
ASN
121
n
123
ASN
121
A
GLU
122
n
124
GLU
122
A
PRO
123
n
125
PRO
123
A
ASN
124
n
126
ASN
124
A
ILE
125
n
127
ILE
125
A
GLN
126
n
128
GLN
126
A
ASP
127
n
129
ASP
127
A
PRO
128
n
130
PRO
128
A
ALA
129
n
131
ALA
129
A
GLN
130
n
132
GLN
130
A
ALA
131
n
133
ALA
131
A
GLU
132
n
134
GLU
132
A
ALA
133
n
135
ALA
133
A
TYR
134
n
136
TYR
134
A
THR
135
n
137
THR
135
A
ILE
136
n
138
ILE
136
A
TYR
137
n
139
TYR
137
A
CYS
138
n
140
CYS
138
A
GLN
139
n
141
GLN
139
A
ASN
140
n
142
ASN
140
A
ARG
141
n
143
ARG
141
A
VAL
142
n
144
VAL
142
A
GLU
143
n
145
GLU
143
A
TYR
144
n
146
TYR
144
A
GLU
145
n
147
GLU
145
A
LYS
146
n
148
LYS
146
A
ARG
147
n
149
ARG
147
A
VAL
148
n
150
VAL
148
A
ARG
149
n
151
ARG
149
A
ALA
150
n
152
ALA
150
A
GLN
151
n
153
GLN
151
A
ALA
152
n
154
ALA
152
A
LYS
153
n
155
LYS
153
A
LYS
154
n
156
LYS
154
A
PHE
155
n
157
PHE
155
A
ALA
156
n
158
ALA
156
A
PRO
157
n
159
PRO
157
A
SER
158
n
160
SER
158
A
author_defined_assembly
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
O
VAL
25
A
O
VAL
27
A
N
ALA
44
A
N
ALA
46
A
O
TRP
41
A
O
TRP
43
A
N
MET
62
A
N
MET
64
A
O
ARG
61
A
O
ARG
63
A
N
LYS
76
A
N
LYS
78
1
A
GLY
-1
A
GLY
1
1
Y
1
A
SER
0
A
SER
2
1
Y
1
A
MET
1
A
MET
3
0
Y
1
A
PRO
32
A
PRO
34
0
Y
1
A
ASP
33
A
ASP
35
0
Y
1
A
GLY
34
A
GLY
36
0
Y
1
A
THR
35
A
THR
37
0
Y
1
9.78
1.50
119.30
129.08
A
A
A
C
N
CA
ASP
PRO
PRO
127
128
128
Y
1
A
SER
2
-49.11
178.29
1
A
PRO
32
-52.93
178.18
1
A
ASP
33
28.53
82.74
1
A
THR
35
-55.14
-152.16
1
A
MET
36
177.27
150.85
1
A
TYR
68
-24.72
130.72
1
A
LYS
101
-106.60
-116.19
1
A
ASN
140
-178.53
61.65
PROTEIN_REP.PARAM
PROTEIN.TOP
PROTEIN.LINK
42.5
7.6
0.
0.
7.6
0.
-15.2
ATOMS WITH ZERO OCCUPANCY AR E MODELLED AND WERE NOT LOCATED BY EXPERIMENTAL DENSITY. DATA CUTOFF HIGH (ABS(F)) : 9999999999 DATA CUTOFF LOW (ABS(F)) : 0
0.2600000
0.01
0.2100000
0.2100000
2.8
560
5605
10.
96.
RANDOM
9999999999
1
RESTRAINED
THROUGHOUT
0.
MOLECULAR REPLACEMENT
PDB ENTRY 1AAK
DENSITY MODIFICATION
34.51
0.325
0.47
0.37
5.0
0.64
0.54
2.8
0
1268
0
0
1268
0.011
1.87
22.06
1.00
2.67
1.5
4.09
2.0
4.35
2.0
5.71
2.5
0.4300000
0.07
0.3100000
2.9
42
435
10
10.
81.
43.8
2.8
1A3S
5605
0.
0.1000000
0.1000000
1
7.2
3.1
96.
0.1900000
2.8
2.9
2.4
0.1900000
2.0
81.
phasing
AMoRE
refinement
CNS
0.2
data reduction
DENZO
data scaling
SCALEPACK
UBC9
HUMAN UBC9
1
N
N
A
ILE
4
A
ILE
6
HELX_P
A
LYS
18
A
LYS
20
1
1
15
A
SER
95
A
SER
97
HELX_P
A
LEU
97
A
LEU
99
5
2
3
A
ILE
109
A
ILE
111
HELX_P
A
ASN
121
A
ASN
123
1
3
13
A
ALA
131
A
ALA
133
HELX_P
A
GLN
139
A
GLN
141
1
4
9
A
ARG
141
A
ARG
143
HELX_P
A
LYS
154
A
LYS
156
1
5
14
SUMO CONJUGATING ENZYME
SUMO CONJUGATING ENZYME, UBIQUITIN CONJUGATING ENZYME
A
TYR
68
A
TYR
70
1
A
PRO
69
A
PRO
71
0.17
A
GLU
78
A
GLU
80
1
A
PRO
79
A
PRO
81
-5.27
UBE2I_HUMAN
UNP
1
1
P63279
MSGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPP
LFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVRAQAKKFAPS
1
158
1A3S
1
158
P63279
A
1
3
160
4
anti-parallel
anti-parallel
anti-parallel
A
VAL
25
A
VAL
27
A
PRO
28
A
PRO
30
A
ASN
40
A
ASN
42
A
PRO
46
A
PRO
48
A
LEU
57
A
LEU
59
A
LEU
63
A
LEU
65
A
LYS
74
A
LYS
76
A
PHE
77
A
PHE
79
78
P 43