0.016554
0.000000
0.000000
0.000000
0.016554
0.000000
0.000000
0.000000
0.016548
0.00000
0.00000
0.00000
Worthylake, D.K.
Wang, H.
Yoo, S.
Sundquist, W.I.
Hill, C.P.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.00
90.00
90.00
60.410
60.410
60.430
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
DK
Acta Crystallogr.,Sect.D
ABCRE6
0766
0907-4449
55
85
92
10.1107/S0907444998007689
10089398
Structures of the HIV-1 capsid protein dimerization domain at 2.6 A resolution.
1999
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
300
1
MIRRORS
IMAGE PLATE
1997-09
MARRESEARCH
M
x-ray
1
1.0
1.0
X8C
NSLS
1.0
SYNCHROTRON
NSLS BEAMLINE X8C
9662.116
HIV-1 CAPSID
C-TERMINAL DOMAIN OF HIV-1 CAPSID PROTEIN RESIDUES 146-231 (CAPSID NUMBERING)
1
man
polymer
18.015
water
28
nat
water
no
no
MSPTSILDIRQGPKEPFRDYVDRFYKTLRAEQASQEVKNWMTETLLVQNANPDCKTILKALGPGATLEEMMTACQGVGGP
GHKARVL
MSPTSILDIRQGPKEPFRDYVDRFYKTLRAEQASQEVKNWMTETLLVQNANPDCKTILKALGPGATLEEMMTACQGVGGP
GHKARVL
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Lentivirus
Escherichia
Escherichia coli
sample
BL21
11676
Human immunodeficiency virus 1
469008
Escherichia coli BL21(DE3)
BL21 (DE3)
BL21
1
2.85
56.86
5.0
pH 5.0
repository
Initial release
Version format compliance
Version format compliance
1
0
1999-02-09
1
1
2008-03-24
1
2
2011-07-13
Y
BNL
1998-02-10
REL
REL
HOH
water
HOH
401
2
HOH
HOH
401
A
HOH
402
2
HOH
HOH
402
A
HOH
403
2
HOH
HOH
403
A
HOH
404
2
HOH
HOH
404
A
HOH
405
2
HOH
HOH
405
A
HOH
406
2
HOH
HOH
406
A
HOH
407
2
HOH
HOH
407
A
HOH
408
2
HOH
HOH
408
A
HOH
409
2
HOH
HOH
409
A
HOH
410
2
HOH
HOH
410
A
HOH
411
2
HOH
HOH
411
A
HOH
412
2
HOH
HOH
412
A
HOH
413
2
HOH
HOH
413
A
HOH
414
2
HOH
HOH
414
A
HOH
415
2
HOH
HOH
415
A
HOH
416
2
HOH
HOH
416
A
HOH
417
2
HOH
HOH
417
A
HOH
418
2
HOH
HOH
418
A
HOH
419
2
HOH
HOH
419
A
HOH
420
2
HOH
HOH
420
A
HOH
421
2
HOH
HOH
421
A
HOH
422
2
HOH
HOH
422
A
HOH
423
2
HOH
HOH
423
A
HOH
424
2
HOH
HOH
424
A
HOH
425
2
HOH
HOH
425
A
HOH
426
2
HOH
HOH
426
A
HOH
427
2
HOH
HOH
427
A
HOH
428
2
HOH
HOH
428
A
n
1
145
A
n
2
146
A
n
3
147
A
THR
148
n
4
THR
148
A
SER
149
n
5
SER
149
A
ILE
150
n
6
ILE
150
A
LEU
151
n
7
LEU
151
A
ASP
152
n
8
ASP
152
A
ILE
153
n
9
ILE
153
A
ARG
154
n
10
ARG
154
A
GLN
155
n
11
GLN
155
A
GLY
156
n
12
GLY
156
A
PRO
157
n
13
PRO
157
A
LYS
158
n
14
LYS
158
A
GLU
159
n
15
GLU
159
A
PRO
160
n
16
PRO
160
A
PHE
161
n
17
PHE
161
A
ARG
162
n
18
ARG
162
A
ASP
163
n
19
ASP
163
A
TYR
164
n
20
TYR
164
A
VAL
165
n
21
VAL
165
A
ASP
166
n
22
ASP
166
A
ARG
167
n
23
ARG
167
A
PHE
168
n
24
PHE
168
A
TYR
169
n
25
TYR
169
A
LYS
170
n
26
LYS
170
A
THR
171
n
27
THR
171
A
LEU
172
n
28
LEU
172
A
ARG
173
n
29
ARG
173
A
ALA
174
n
30
ALA
174
A
GLU
175
n
31
GLU
175
A
GLN
176
n
32
GLN
176
A
ALA
177
n
33
ALA
177
A
SER
178
n
34
SER
178
A
GLN
179
n
35
GLN
179
A
GLU
180
n
36
GLU
180
A
VAL
181
n
37
VAL
181
A
LYS
182
n
38
LYS
182
A
ASN
183
n
39
ASN
183
A
TRP
184
n
40
TRP
184
A
MET
185
n
41
MET
185
A
THR
186
n
42
THR
186
A
GLU
187
n
43
GLU
187
A
THR
188
n
44
THR
188
A
LEU
189
n
45
LEU
189
A
LEU
190
n
46
LEU
190
A
VAL
191
n
47
VAL
191
A
GLN
192
n
48
GLN
192
A
ASN
193
n
49
ASN
193
A
ALA
194
n
50
ALA
194
A
ASN
195
n
51
ASN
195
A
PRO
196
n
52
PRO
196
A
ASP
197
n
53
ASP
197
A
CYS
198
n
54
CYS
198
A
LYS
199
n
55
LYS
199
A
THR
200
n
56
THR
200
A
ILE
201
n
57
ILE
201
A
LEU
202
n
58
LEU
202
A
LYS
203
n
59
LYS
203
A
ALA
204
n
60
ALA
204
A
LEU
205
n
61
LEU
205
A
GLY
206
n
62
GLY
206
A
PRO
207
n
63
PRO
207
A
GLY
208
n
64
GLY
208
A
ALA
209
n
65
ALA
209
A
THR
210
n
66
THR
210
A
LEU
211
n
67
LEU
211
A
GLU
212
n
68
GLU
212
A
GLU
213
n
69
GLU
213
A
MET
214
n
70
MET
214
A
MET
215
n
71
MET
215
A
THR
216
n
72
THR
216
A
ALA
217
n
73
ALA
217
A
CYS
218
n
74
CYS
218
A
GLN
219
n
75
GLN
219
A
n
76
220
A
n
77
221
A
n
78
222
A
n
79
223
A
n
80
224
A
n
81
225
A
n
82
226
A
n
83
227
A
n
84
228
A
n
85
229
A
n
86
230
A
n
87
231
A
author_defined_assembly
2
dimeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
6_665
-x+1,-y+1,z
crystal symmetry operation
60.4100000000
60.4100000000
0.0000000000
1
A
MET
145
A
MET
1
1
Y
1
A
SER
146
A
SER
2
1
Y
1
A
PRO
147
A
PRO
3
1
Y
1
A
GLY
220
A
GLY
76
1
Y
1
A
VAL
221
A
VAL
77
1
Y
1
A
GLY
222
A
GLY
78
1
Y
1
A
GLY
223
A
GLY
79
1
Y
1
A
PRO
224
A
PRO
80
1
Y
1
A
GLY
225
A
GLY
81
1
Y
1
A
HIS
226
A
HIS
82
1
Y
1
A
LYS
227
A
LYS
83
1
Y
1
A
ALA
228
A
ALA
84
1
Y
1
A
ARG
229
A
ARG
85
1
Y
1
A
VAL
230
A
VAL
86
1
Y
1
A
LEU
231
A
LEU
87
1
Y
1
A
THR
188
-116.91
-83.55
PARHCSDX.PRO
TOPHCSDX.PRO
TIP3P.PARAMETER
TIP3P.TOPOLOGY
71.0
0.00
0.00
0.00
0.00
0.00
0.00
BULK SOLVENT MODEL USED
0.281
0.016
0.223
0.223
2.60
20.00
303
3102
9.8
91.8
RANDOM
10000000.00
0.00100
1
RESTRAINED
THROUGHOUT
0.0
0.39
0.35
20.0
0.60
0.50
2.60
20.00
28
601
0
0
573
0.009
1.2
21.2
1.15
2.67
1.50
4.44
2.00
4.34
2.00
7.02
2.50
0.521
0.069
0.377
2.76
57
500
6
10.2
99.8
59.6
2.6
20.0
1A43
3102
0
1
data reduction
DENZO
data scaling
SCALEPACK
model building
X-PLOR
3.843
refinement
X-PLOR
3.843
phasing
X-PLOR
3.843
HIV-1 CAPSID
STRUCTURE OF THE HIV-1 CAPSID PROTEIN DIMERIZATION DOMAIN AT 2.6A RESOLUTION
1
N
N
2
N
N
A
ILE
150
A
ILE
6
HELX_P
A
ASP
152
A
ASP
8
5
1
3
A
PHE
161
A
PHE
17
HELX_P
A
ALA
174
A
ALA
30
1
2
14
A
GLN
179
A
GLN
35
HELX_P
A
GLU
187
A
GLU
43
1
3
9
A
LEU
189
A
LEU
45
HELX_P
A
GLN
192
A
GLN
48
1
4
4
A
PRO
196
A
PRO
52
HELX_P
A
LEU
205
A
LEU
61
1
5
10
A
LEU
211
A
LEU
67
HELX_P
A
ALA
217
A
ALA
73
1
6
7
disulf
2.042
A
CYS
198
A
SG
CYS
54
1_555
A
CYS
218
A
SG
CYS
74
1_555
VIRAL PROTEIN
CAPSID, ASSEMBLY PROTEIN, HIV-1, Viral protein
POL_HV1N5
UNP
1
1
P12497
GARASVLSGGELDKWEKIRLRPGGKKQYKLKHIVWASRELERFAVNPGLLETSEGCRQILGQLQPSLQTGSEELRSLYNT
IAVLYCVHQRIDVKDTKEALDKIEEEQNKSKKKAQQAAADTGNNSQVSQNYPIVQNLQGQMVHQAISPRTLNAWVKVVEE
KAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRLHPVHAGPIAPGQMREPRGSDIAGTTS
TLQEQIGWMTHNPPIPVGEIYKRWIILGLNKIVRMYSPTSILDIRQGPKEPFRDYVDRFYKTLRAEQASQEVKNWMTETL
LVQNANPDCKTILKALGPGATLEEMMTACQGVGGPGHKARVLAEAMSQVTNPATIMIQKGNFRNQRKTVKCFNCGKEGHI
AKNCRAPRKKGCWKCGKEGHQMKDCTERQANFLGKIWPSHKGRPGNFLQSRPEPTAPPEESFRFGEETTTPSQKQEPIDK
ELYPLASLRSLFGSDPSSQ
277
362
1A43
146
231
P12497
A
1
2
87
80
I 41