0.010137
0.000000
0.000000
0.000000
0.010137
0.000000
0.000000
0.000000
0.009601
0.00000
0.00000
0.00000
Rudolph, M.G.
Vetter, I.R.
Wittinghofer, A.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
16
90.00
90.00
90.00
98.650
98.650
104.160
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C10 H15 N5 O11 P2
443.201
n
GUANOSINE-5'-DIPHOSPHATE
RNA linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C10 H16 N6 O10 P2
442.216
AMINOPHOSPHONIC ACID-GUANYLATE ESTER
non-polymer
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
Mg 2
24.305
MAGNESIUM ION
non-polymer
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
US
Protein Sci.
PRCIEI
0795
0961-8368
8
778
787
10211824
Nucleotide binding to the G12V-mutant of Cdc42 investigated by X-ray diffraction and fluorescence spectroscopy: two different nucleotide states in one crystal.
1999
10.2210/pdb1a4r/pdb
pdb_00001a4r
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100.0
1
IMAGE PLATE
1997-06-01
MARRESEARCH
SINGLE WAVELENGTH
M
x-ray
1
1.07740
1.0
X31
EMBL/DESY, HAMBURG
1.07740
SYNCHROTRON
EMBL/DESY, HAMBURG BEAMLINE X31
21325.660
G25K GTP-BINDING PROTEIN
YES
2
man
polymer
24.305
MAGNESIUM ION
1
syn
non-polymer
443.201
GUANOSINE-5'-DIPHOSPHATE
1
syn
non-polymer
442.216
AMINOPHOSPHONIC ACID-GUANYLATE ESTER
1
syn
non-polymer
18.015
water
54
nat
water
G25K, CDC42 HOMOLOG
no
no
MQTIKCVVVGDVAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLV
CFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSAL
TQKGLKNVFDEAILAALEPPEPKKSRRCVLL
MQTIKCVVVGDVAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLV
CFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSAL
TQKGLKNVFDEAILAALEPPEPKKSRRCVLL
A,B
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
human
Homo
PLACENTA
Escherichia
Escherichia coli
sample
BL21
CYTOPLASM, INNER SIDE OF MEMBRANE
9606
Homo sapiens
CYTOPLASM
469008
Escherichia coli BL21(DE3)
BL21 (DE3)
ESCHERICHIA COLI
PLASMID
PGEX2T
1
2.90
51.0
4.60
pH 4.60
database_2
diffrn_source
pdbx_struct_conn_angle
struct_conn
struct_ref_seq_dif
struct_site
pdbx_initial_refinement_model
repository
Initial release
Version format compliance
Version format compliance
Data collection
Database references
Derived calculations
Refinement description
1
0
1999-03-02
1
1
2008-03-24
1
2
2011-07-13
1
3
2021-11-03
1
4
2023-08-02
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_diffrn_source.pdbx_synchrotron_site
_pdbx_struct_conn_angle.ptnr1_auth_comp_id
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr1_label_asym_id
_pdbx_struct_conn_angle.ptnr1_label_atom_id
_pdbx_struct_conn_angle.ptnr1_label_comp_id
_pdbx_struct_conn_angle.ptnr1_label_seq_id
_pdbx_struct_conn_angle.ptnr3_auth_comp_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_label_asym_id
_pdbx_struct_conn_angle.ptnr3_label_atom_id
_pdbx_struct_conn_angle.ptnr3_label_comp_id
_pdbx_struct_conn_angle.ptnr3_label_seq_id
_pdbx_struct_conn_angle.value
_struct_conn.pdbx_dist_value
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_ref_seq_dif.details
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
Y
BNL
1998-02-02
REL
REL
MG
MAGNESIUM ION
GDP
GUANOSINE-5'-DIPHOSPHATE
GNH
AMINOPHOSPHONIC ACID-GUANYLATE ESTER
HOH
water
4Q21
4Q21 WITH ALL NON-CONSERVED RESIDUES MUTATED TO ALANINE
PDB
experimental model
MG
199
2
MG
MG
199
A
GDP
200
3
GDP
GDP
200
A
GNH
400
4
GNH
GNH
400
B
HOH
1000
5
HOH
HOH
1000
A
HOH
1001
5
HOH
HOH
1001
A
HOH
1002
5
HOH
HOH
1002
A
HOH
1003
5
HOH
HOH
1003
A
HOH
1004
5
HOH
HOH
1004
A
HOH
1005
5
HOH
HOH
1005
A
HOH
1006
5
HOH
HOH
1006
A
HOH
1007
5
HOH
HOH
1007
A
HOH
1008
5
HOH
HOH
1008
A
HOH
1009
5
HOH
HOH
1009
A
HOH
1010
5
HOH
HOH
1010
A
HOH
1011
5
HOH
HOH
1011
A
HOH
1012
5
HOH
HOH
1012
A
HOH
1013
5
HOH
HOH
1013
A
HOH
1014
5
HOH
HOH
1014
A
HOH
1016
5
HOH
HOH
1016
A
HOH
1017
5
HOH
HOH
1017
A
HOH
1018
5
HOH
HOH
1018
A
HOH
1019
5
HOH
HOH
1019
A
HOH
1020
5
HOH
HOH
1020
A
HOH
1021
5
HOH
HOH
1021
A
HOH
1022
5
HOH
HOH
1022
A
HOH
1023
5
HOH
HOH
1023
A
HOH
1024
5
HOH
HOH
1024
A
HOH
1026
5
HOH
HOH
1026
A
HOH
1027
5
HOH
HOH
1027
A
HOH
1031
5
HOH
HOH
1031
A
HOH
1032
5
HOH
HOH
1032
A
HOH
1033
5
HOH
HOH
1033
A
HOH
1034
5
HOH
HOH
1034
A
HOH
1035
5
HOH
HOH
1035
A
HOH
1036
5
HOH
HOH
1036
A
HOH
1037
5
HOH
HOH
1037
A
HOH
1038
5
HOH
HOH
1038
A
HOH
1040
5
HOH
HOH
1040
A
HOH
1041
5
HOH
HOH
1041
A
HOH
1042
5
HOH
HOH
1042
A
HOH
1043
5
HOH
HOH
1043
A
HOH
1044
5
HOH
HOH
1044
A
HOH
1045
5
HOH
HOH
1045
A
HOH
1046
5
HOH
HOH
1046
A
HOH
1047
5
HOH
HOH
1047
A
HOH
1048
5
HOH
HOH
1048
A
HOH
1049
5
HOH
HOH
1049
A
HOH
1050
5
HOH
HOH
1050
A
HOH
1051
5
HOH
HOH
1051
A
HOH
1052
5
HOH
HOH
1052
A
HOH
1053
5
HOH
HOH
1053
A
HOH
1015
5
HOH
HOH
1015
B
HOH
1025
5
HOH
HOH
1025
B
HOH
1028
5
HOH
HOH
1028
B
HOH
1029
5
HOH
HOH
1029
B
HOH
1030
5
HOH
HOH
1030
B
HOH
1039
5
HOH
HOH
1039
B
MET
1
n
1
MET
1
A
GLN
2
n
2
GLN
2
A
THR
3
n
3
THR
3
A
ILE
4
n
4
ILE
4
A
LYS
5
n
5
LYS
5
A
CYS
6
n
6
CYS
6
A
VAL
7
n
7
VAL
7
A
VAL
8
n
8
VAL
8
A
VAL
9
n
9
VAL
9
A
GLY
10
n
10
GLY
10
A
ASP
11
n
11
ASP
11
A
VAL
12
n
12
VAL
12
A
ALA
13
n
13
ALA
13
A
VAL
14
n
14
VAL
14
A
GLY
15
n
15
GLY
15
A
LYS
16
n
16
LYS
16
A
THR
17
n
17
THR
17
A
CYS
18
n
18
CYS
18
A
LEU
19
n
19
LEU
19
A
LEU
20
n
20
LEU
20
A
ILE
21
n
21
ILE
21
A
SER
22
n
22
SER
22
A
TYR
23
n
23
TYR
23
A
THR
24
n
24
THR
24
A
THR
25
n
25
THR
25
A
ASN
26
n
26
ASN
26
A
LYS
27
n
27
LYS
27
A
PHE
28
n
28
PHE
28
A
PRO
29
n
29
PRO
29
A
SER
30
n
30
SER
30
A
GLU
31
n
31
GLU
31
A
TYR
32
n
32
TYR
32
A
VAL
33
n
33
VAL
33
A
PRO
34
n
34
PRO
34
A
THR
35
n
35
THR
35
A
VAL
36
n
36
VAL
36
A
PHE
37
n
37
PHE
37
A
ASP
38
n
38
ASP
38
A
ASN
39
n
39
ASN
39
A
TYR
40
n
40
TYR
40
A
ALA
41
n
41
ALA
41
A
VAL
42
n
42
VAL
42
A
THR
43
n
43
THR
43
A
VAL
44
n
44
VAL
44
A
MET
45
n
45
MET
45
A
ILE
46
n
46
ILE
46
A
GLY
47
n
47
GLY
47
A
GLY
48
n
48
GLY
48
A
GLU
49
n
49
GLU
49
A
PRO
50
n
50
PRO
50
A
TYR
51
n
51
TYR
51
A
THR
52
n
52
THR
52
A
LEU
53
n
53
LEU
53
A
GLY
54
n
54
GLY
54
A
LEU
55
n
55
LEU
55
A
PHE
56
n
56
PHE
56
A
ASP
57
n
57
ASP
57
A
THR
58
n
58
THR
58
A
ALA
59
n
59
ALA
59
A
GLY
60
n
60
GLY
60
A
GLN
61
n
61
GLN
61
A
GLU
62
n
62
GLU
62
A
ASP
63
n
63
ASP
63
A
TYR
64
n
64
TYR
64
A
ASP
65
n
65
ASP
65
A
ARG
66
n
66
ARG
66
A
LEU
67
n
67
LEU
67
A
ARG
68
n
68
ARG
68
A
PRO
69
n
69
PRO
69
A
LEU
70
n
70
LEU
70
A
SER
71
n
71
SER
71
A
TYR
72
n
72
TYR
72
A
PRO
73
n
73
PRO
73
A
GLN
74
n
74
GLN
74
A
THR
75
n
75
THR
75
A
ASP
76
n
76
ASP
76
A
VAL
77
n
77
VAL
77
A
PHE
78
n
78
PHE
78
A
LEU
79
n
79
LEU
79
A
VAL
80
n
80
VAL
80
A
CYS
81
n
81
CYS
81
A
PHE
82
n
82
PHE
82
A
SER
83
n
83
SER
83
A
VAL
84
n
84
VAL
84
A
VAL
85
n
85
VAL
85
A
SER
86
n
86
SER
86
A
PRO
87
n
87
PRO
87
A
SER
88
n
88
SER
88
A
SER
89
n
89
SER
89
A
PHE
90
n
90
PHE
90
A
GLU
91
n
91
GLU
91
A
ASN
92
n
92
ASN
92
A
VAL
93
n
93
VAL
93
A
LYS
94
n
94
LYS
94
A
GLU
95
n
95
GLU
95
A
LYS
96
n
96
LYS
96
A
TRP
97
n
97
TRP
97
A
VAL
98
n
98
VAL
98
A
PRO
99
n
99
PRO
99
A
GLU
100
n
100
GLU
100
A
ILE
101
n
101
ILE
101
A
THR
102
n
102
THR
102
A
HIS
103
n
103
HIS
103
A
HIS
104
n
104
HIS
104
A
CYS
105
n
105
CYS
105
A
PRO
106
n
106
PRO
106
A
LYS
107
n
107
LYS
107
A
THR
108
n
108
THR
108
A
PRO
109
n
109
PRO
109
A
PHE
110
n
110
PHE
110
A
LEU
111
n
111
LEU
111
A
LEU
112
n
112
LEU
112
A
VAL
113
n
113
VAL
113
A
GLY
114
n
114
GLY
114
A
THR
115
n
115
THR
115
A
GLN
116
n
116
GLN
116
A
ILE
117
n
117
ILE
117
A
ASP
118
n
118
ASP
118
A
LEU
119
n
119
LEU
119
A
ARG
120
n
120
ARG
120
A
ASP
121
n
121
ASP
121
A
ASP
122
n
122
ASP
122
A
PRO
123
n
123
PRO
123
A
SER
124
n
124
SER
124
A
THR
125
n
125
THR
125
A
ILE
126
n
126
ILE
126
A
GLU
127
n
127
GLU
127
A
LYS
128
n
128
LYS
128
A
LEU
129
n
129
LEU
129
A
ALA
130
n
130
ALA
130
A
LYS
131
n
131
LYS
131
A
ASN
132
n
132
ASN
132
A
LYS
133
n
133
LYS
133
A
GLN
134
n
134
GLN
134
A
LYS
135
n
135
LYS
135
A
PRO
136
n
136
PRO
136
A
ILE
137
n
137
ILE
137
A
THR
138
n
138
THR
138
A
PRO
139
n
139
PRO
139
A
GLU
140
n
140
GLU
140
A
THR
141
n
141
THR
141
A
ALA
142
n
142
ALA
142
A
GLU
143
n
143
GLU
143
A
LYS
144
n
144
LYS
144
A
LEU
145
n
145
LEU
145
A
ALA
146
n
146
ALA
146
A
ARG
147
n
147
ARG
147
A
ASP
148
n
148
ASP
148
A
LEU
149
n
149
LEU
149
A
LYS
150
n
150
LYS
150
A
ALA
151
n
151
ALA
151
A
VAL
152
n
152
VAL
152
A
LYS
153
n
153
LYS
153
A
TYR
154
n
154
TYR
154
A
VAL
155
n
155
VAL
155
A
GLU
156
n
156
GLU
156
A
CYS
157
n
157
CYS
157
A
SER
158
n
158
SER
158
A
ALA
159
n
159
ALA
159
A
LEU
160
n
160
LEU
160
A
THR
161
n
161
THR
161
A
GLN
162
n
162
GLN
162
A
LYS
163
n
163
LYS
163
A
GLY
164
n
164
GLY
164
A
LEU
165
n
165
LEU
165
A
LYS
166
n
166
LYS
166
A
ASN
167
n
167
ASN
167
A
VAL
168
n
168
VAL
168
A
PHE
169
n
169
PHE
169
A
ASP
170
n
170
ASP
170
A
GLU
171
n
171
GLU
171
A
ALA
172
n
172
ALA
172
A
ILE
173
n
173
ILE
173
A
LEU
174
n
174
LEU
174
A
ALA
175
n
175
ALA
175
A
ALA
176
n
176
ALA
176
A
LEU
177
n
177
LEU
177
A
GLU
178
n
178
GLU
178
A
PRO
179
n
179
PRO
179
A
PRO
180
n
180
PRO
180
A
GLU
181
n
181
GLU
181
A
PRO
182
n
182
PRO
182
A
LYS
183
n
183
LYS
183
A
LYS
184
n
184
LYS
184
A
SER
185
n
185
SER
185
A
ARG
186
n
186
ARG
186
A
ARG
187
n
187
ARG
187
A
CYS
188
n
188
CYS
188
A
VAL
189
n
189
VAL
189
A
LEU
190
n
190
LEU
190
A
n
191
191
A
MET
201
n
1
MET
201
B
GLN
202
n
2
GLN
202
B
THR
203
n
3
THR
203
B
ILE
204
n
4
ILE
204
B
LYS
205
n
5
LYS
205
B
CYS
206
n
6
CYS
206
B
VAL
207
n
7
VAL
207
B
VAL
208
n
8
VAL
208
B
VAL
209
n
9
VAL
209
B
GLY
210
n
10
GLY
210
B
ASP
211
n
11
ASP
211
B
VAL
212
n
12
VAL
212
B
ALA
213
n
13
ALA
213
B
VAL
214
n
14
VAL
214
B
GLY
215
n
15
GLY
215
B
LYS
216
n
16
LYS
216
B
THR
217
n
17
THR
217
B
CYS
218
n
18
CYS
218
B
LEU
219
n
19
LEU
219
B
LEU
220
n
20
LEU
220
B
ILE
221
n
21
ILE
221
B
SER
222
n
22
SER
222
B
TYR
223
n
23
TYR
223
B
THR
224
n
24
THR
224
B
THR
225
n
25
THR
225
B
ASN
226
n
26
ASN
226
B
LYS
227
n
27
LYS
227
B
PHE
228
n
28
PHE
228
B
PRO
229
n
29
PRO
229
B
SER
230
n
30
SER
230
B
GLU
231
n
31
GLU
231
B
TYR
232
n
32
TYR
232
B
VAL
233
n
33
VAL
233
B
PRO
234
n
34
PRO
234
B
THR
235
n
35
THR
235
B
VAL
236
n
36
VAL
236
B
PHE
237
n
37
PHE
237
B
ASP
238
n
38
ASP
238
B
ASN
239
n
39
ASN
239
B
TYR
240
n
40
TYR
240
B
ALA
241
n
41
ALA
241
B
VAL
242
n
42
VAL
242
B
THR
243
n
43
THR
243
B
VAL
244
n
44
VAL
244
B
MET
245
n
45
MET
245
B
ILE
246
n
46
ILE
246
B
GLY
247
n
47
GLY
247
B
GLY
248
n
48
GLY
248
B
GLU
249
n
49
GLU
249
B
PRO
250
n
50
PRO
250
B
TYR
251
n
51
TYR
251
B
THR
252
n
52
THR
252
B
LEU
253
n
53
LEU
253
B
GLY
254
n
54
GLY
254
B
LEU
255
n
55
LEU
255
B
PHE
256
n
56
PHE
256
B
ASP
257
n
57
ASP
257
B
THR
258
n
58
THR
258
B
ALA
259
n
59
ALA
259
B
GLY
260
n
60
GLY
260
B
GLN
261
n
61
GLN
261
B
GLU
262
n
62
GLU
262
B
ASP
263
n
63
ASP
263
B
TYR
264
n
64
TYR
264
B
ASP
265
n
65
ASP
265
B
ARG
266
n
66
ARG
266
B
LEU
267
n
67
LEU
267
B
ARG
268
n
68
ARG
268
B
PRO
269
n
69
PRO
269
B
LEU
270
n
70
LEU
270
B
SER
271
n
71
SER
271
B
TYR
272
n
72
TYR
272
B
PRO
273
n
73
PRO
273
B
GLN
274
n
74
GLN
274
B
THR
275
n
75
THR
275
B
ASP
276
n
76
ASP
276
B
VAL
277
n
77
VAL
277
B
PHE
278
n
78
PHE
278
B
LEU
279
n
79
LEU
279
B
VAL
280
n
80
VAL
280
B
CYS
281
n
81
CYS
281
B
PHE
282
n
82
PHE
282
B
SER
283
n
83
SER
283
B
VAL
284
n
84
VAL
284
B
VAL
285
n
85
VAL
285
B
SER
286
n
86
SER
286
B
PRO
287
n
87
PRO
287
B
SER
288
n
88
SER
288
B
SER
289
n
89
SER
289
B
PHE
290
n
90
PHE
290
B
GLU
291
n
91
GLU
291
B
ASN
292
n
92
ASN
292
B
VAL
293
n
93
VAL
293
B
LYS
294
n
94
LYS
294
B
GLU
295
n
95
GLU
295
B
LYS
296
n
96
LYS
296
B
TRP
297
n
97
TRP
297
B
VAL
298
n
98
VAL
298
B
PRO
299
n
99
PRO
299
B
GLU
300
n
100
GLU
300
B
ILE
301
n
101
ILE
301
B
THR
302
n
102
THR
302
B
HIS
303
n
103
HIS
303
B
HIS
304
n
104
HIS
304
B
CYS
305
n
105
CYS
305
B
PRO
306
n
106
PRO
306
B
LYS
307
n
107
LYS
307
B
THR
308
n
108
THR
308
B
PRO
309
n
109
PRO
309
B
PHE
310
n
110
PHE
310
B
LEU
311
n
111
LEU
311
B
LEU
312
n
112
LEU
312
B
VAL
313
n
113
VAL
313
B
GLY
314
n
114
GLY
314
B
THR
315
n
115
THR
315
B
GLN
316
n
116
GLN
316
B
ILE
317
n
117
ILE
317
B
ASP
318
n
118
ASP
318
B
LEU
319
n
119
LEU
319
B
ARG
320
n
120
ARG
320
B
ASP
321
n
121
ASP
321
B
ASP
322
n
122
ASP
322
B
PRO
323
n
123
PRO
323
B
SER
324
n
124
SER
324
B
THR
325
n
125
THR
325
B
ILE
326
n
126
ILE
326
B
GLU
327
n
127
GLU
327
B
LYS
328
n
128
LYS
328
B
LEU
329
n
129
LEU
329
B
ALA
330
n
130
ALA
330
B
LYS
331
n
131
LYS
331
B
ASN
332
n
132
ASN
332
B
LYS
333
n
133
LYS
333
B
GLN
334
n
134
GLN
334
B
LYS
335
n
135
LYS
335
B
PRO
336
n
136
PRO
336
B
ILE
337
n
137
ILE
337
B
THR
338
n
138
THR
338
B
PRO
339
n
139
PRO
339
B
GLU
340
n
140
GLU
340
B
THR
341
n
141
THR
341
B
ALA
342
n
142
ALA
342
B
GLU
343
n
143
GLU
343
B
LYS
344
n
144
LYS
344
B
LEU
345
n
145
LEU
345
B
ALA
346
n
146
ALA
346
B
ARG
347
n
147
ARG
347
B
ASP
348
n
148
ASP
348
B
LEU
349
n
149
LEU
349
B
LYS
350
n
150
LYS
350
B
ALA
351
n
151
ALA
351
B
VAL
352
n
152
VAL
352
B
LYS
353
n
153
LYS
353
B
TYR
354
n
154
TYR
354
B
VAL
355
n
155
VAL
355
B
GLU
356
n
156
GLU
356
B
CYS
357
n
157
CYS
357
B
SER
358
n
158
SER
358
B
ALA
359
n
159
ALA
359
B
LEU
360
n
160
LEU
360
B
THR
361
n
161
THR
361
B
GLN
362
n
162
GLN
362
B
LYS
363
n
163
LYS
363
B
GLY
364
n
164
GLY
364
B
LEU
365
n
165
LEU
365
B
LYS
366
n
166
LYS
366
B
ASN
367
n
167
ASN
367
B
VAL
368
n
168
VAL
368
B
PHE
369
n
169
PHE
369
B
ASP
370
n
170
ASP
370
B
GLU
371
n
171
GLU
371
B
ALA
372
n
172
ALA
372
B
ILE
373
n
173
ILE
373
B
LEU
374
n
174
LEU
374
B
ALA
375
n
175
ALA
375
B
ALA
376
n
176
ALA
376
B
LEU
377
n
177
LEU
377
B
GLU
378
n
178
GLU
378
B
PRO
379
n
179
PRO
379
B
PRO
380
n
180
PRO
380
B
GLU
381
n
181
GLU
381
B
PRO
382
n
182
PRO
382
B
LYS
383
n
183
LYS
383
B
LYS
384
n
184
LYS
384
B
SER
385
n
185
SER
385
B
ARG
386
n
186
ARG
386
B
ARG
387
n
187
ARG
387
B
CYS
388
n
188
CYS
388
B
VAL
389
n
189
VAL
389
B
LEU
390
n
190
LEU
390
B
n
191
391
B
author_defined_assembly
2
dimeric
A
THR
17
A
OG1
THR
17
1_555
A
MG
199
C
MG
MG
1_555
A
GDP
200
D
O3B
GDP
1_555
90.4
A
THR
17
A
OG1
THR
17
1_555
A
MG
199
C
MG
MG
1_555
A
GDP
200
D
O1B
GDP
1_555
134.6
A
GDP
200
D
O3B
GDP
1_555
A
MG
199
C
MG
MG
1_555
A
GDP
200
D
O1B
GDP
1_555
51.6
A
THR
17
A
OG1
THR
17
1_555
A
MG
199
C
MG
MG
1_555
A
HOH
1000
F
O
HOH
1_555
60.0
A
GDP
200
D
O3B
GDP
1_555
A
MG
199
C
MG
MG
1_555
A
HOH
1000
F
O
HOH
1_555
144.8
A
GDP
200
D
O1B
GDP
1_555
A
MG
199
C
MG
MG
1_555
A
HOH
1000
F
O
HOH
1_555
138.4
A
THR
17
A
OG1
THR
17
1_555
A
MG
199
C
MG
MG
1_555
A
HOH
1001
F
O
HOH
1_555
90.5
A
GDP
200
D
O3B
GDP
1_555
A
MG
199
C
MG
MG
1_555
A
HOH
1001
F
O
HOH
1_555
102.5
A
GDP
200
D
O1B
GDP
1_555
A
MG
199
C
MG
MG
1_555
A
HOH
1001
F
O
HOH
1_555
118.4
A
HOH
1000
F
O
HOH
1_555
A
MG
199
C
MG
MG
1_555
A
HOH
1001
F
O
HOH
1_555
96.7
A
THR
17
A
OG1
THR
17
1_555
A
MG
199
C
MG
MG
1_555
A
HOH
1002
F
O
HOH
1_555
164.0
A
GDP
200
D
O3B
GDP
1_555
A
MG
199
C
MG
MG
1_555
A
HOH
1002
F
O
HOH
1_555
104.8
A
GDP
200
D
O1B
GDP
1_555
A
MG
199
C
MG
MG
1_555
A
HOH
1002
F
O
HOH
1_555
56.9
A
HOH
1000
F
O
HOH
1_555
A
MG
199
C
MG
MG
1_555
A
HOH
1002
F
O
HOH
1_555
103.9
A
HOH
1001
F
O
HOH
1_555
A
MG
199
C
MG
MG
1_555
A
HOH
1002
F
O
HOH
1_555
91.3
A
THR
17
A
OG1
THR
17
1_555
A
MG
199
C
MG
MG
1_555
A
HOH
1003
F
O
HOH
1_555
70.7
A
GDP
200
D
O3B
GDP
1_555
A
MG
199
C
MG
MG
1_555
A
HOH
1003
F
O
HOH
1_555
100.3
A
GDP
200
D
O1B
GDP
1_555
A
MG
199
C
MG
MG
1_555
A
HOH
1003
F
O
HOH
1_555
90.6
A
HOH
1000
F
O
HOH
1_555
A
MG
199
C
MG
MG
1_555
A
HOH
1003
F
O
HOH
1_555
54.3
A
HOH
1001
F
O
HOH
1_555
A
MG
199
C
MG
MG
1_555
A
HOH
1003
F
O
HOH
1_555
150.4
A
HOH
1002
F
O
HOH
1_555
A
MG
199
C
MG
MG
1_555
A
HOH
1003
F
O
HOH
1_555
100.8
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
O
VAL
155
A
O
VAL
155
A
N
LEU
112
A
N
LEU
112
A
O
PRO
109
A
O
PRO
109
A
N
PHE
78
A
N
PHE
78
A
O
VAL
77
A
O
VAL
77
A
N
VAL
7
A
N
VAL
7
A
O
ILE
4
A
O
ILE
4
A
N
THR
52
A
N
THR
52
A
O
GLU
49
A
O
GLU
49
A
N
ILE
46
A
N
ILE
46
B
O
VAL
355
B
O
VAL
155
B
N
LEU
312
B
N
LEU
112
B
O
PRO
309
B
O
PRO
109
B
N
PHE
278
B
N
PHE
78
B
O
VAL
277
B
O
VAL
77
B
N
VAL
207
B
N
VAL
7
B
O
GLN
202
B
O
GLN
2
B
N
THR
252
B
N
THR
52
B
O
GLU
249
B
O
GLU
49
B
N
ILE
246
B
N
ILE
46
1
A
LEU
191
A
LEU
191
1
Y
1
B
LEU
391
B
LEU
191
1
Y
1
A
A
O
O
HOH
HOH
1002
1032
2.17
1
A
A
OH
OH
TYR
TYR
64
64
1.81
1_555
7_555
1
A
GLU
31
-71.71
-79.32
1
A
GLN
74
83.10
-11.48
1
A
LYS
96
-122.55
-54.07
1
A
PRO
123
-49.77
-75.98
1
A
SER
124
-29.76
-60.30
1
A
GLU
127
-61.30
-71.76
1
A
ASN
132
-88.89
42.42
1
A
LYS
153
174.97
165.45
1
A
LEU
177
-38.64
109.69
1
A
PRO
180
-39.39
-84.16
1
A
PRO
182
-58.73
-6.96
1
A
LYS
184
-108.41
40.29
1
B
ALA
213
81.07
1.19
1
B
PRO
229
-62.26
78.51
1
B
GLU
231
-79.94
-132.15
1
B
PRO
234
-50.95
99.24
1
B
THR
235
-77.71
35.34
1
B
ASP
238
-144.47
-159.32
1
B
ARG
268
-18.08
-59.61
1
B
PRO
269
-56.40
-6.68
1
B
GLN
274
83.23
-10.63
1
B
VAL
284
-69.75
5.48
1
B
LYS
296
-108.17
-70.88
1
B
LYS
331
-76.70
26.00
1
B
ASN
332
-177.12
30.98
1
B
LYS
333
43.70
27.26
1
B
LYS
353
177.61
165.62
1
B
LEU
377
-40.25
109.02
1
B
GLU
381
-30.78
142.09
1
B
PRO
382
-17.49
66.63
1
B
LYS
383
39.82
55.28
PROTEIN_REP.PARAM
TOPHCSDX.PRO
TIP3P.PARAMETER
TIP3P.TOP
MG.PAR
MG.TOP
GDP.PAR
GDP.TOP
GPN.PAR
GPN.TOP
57.50
BULK SOLVENT MODEL USED
0.28
0.007
0.228
0.228
2.50
30.00
1738
17611
9.900
95.9
RANDOM
10000000.000
0.0010
1
RESTRAINED
THROUGHOUT
2.000
MOLECULAR REPLACEMENT
4Q21 WITH ALL NON-CONSERVED RESIDUES MUTATED TO ALANINE
0.46
0.40
5.00
0.45
0.50
2.50
30.00
54
3170
29
0
3087
0.007
1.20
27.50
0.67
3.04
1.500
4.84
2.000
4.74
2.000
6.98
2.500
1
CONSTRAINED
1
X-RAY DIFFRACTION
0.362
0.042
0.38
2.54
74
746
20
9.00
91.20
46.70
2.500
30.000
1A4R
17611
2.000
0.049
1
15.6000
4.800
99.3
0.46
2.50
2.60
3.300
4.80
99.9
data reduction
DENZO
data scaling
SCALEPACK
model building
X-PLOR
3.851
refinement
X-PLOR
3.851
phasing
X-PLOR
3.851
G12V MUTANT OF HUMAN PLACENTAL CDC42 GTPASE IN THE GDP FORM
1
N
N
1
N
N
2
N
N
3
N
N
4
N
N
5
N
N
5
N
N
A
LYS
16
A
LYS
16
HELX_P
A
THR
25
A
THR
25
1
1
10
A
GLU
62
A
GLU
62
HELX_P
A
SER
71
A
SER
71
5
2
10
A
PRO
87
A
PRO
87
HELX_P
A
GLU
95
A
GLU
95
1
3
9
A
TRP
97
A
TRP
97
HELX_P
A
HIS
104
A
HIS
104
1
4
8
A
ILE
117
A
ILE
117
HELX_P
A
ASP
121
A
ASP
121
5
5
5
A
PRO
123
A
PRO
123
HELX_P
A
ASN
132
A
ASN
132
1
6
10
A
PRO
139
A
PRO
139
HELX_P
A
ASP
148
A
ASP
148
1
7
10
A
LEU
165
A
LEU
165
HELX_P
A
ALA
176
A
ALA
176
1
8
12
A
PRO
182
A
PRO
182
HELX_P
A
LYS
184
A
LYS
184
5
9
3
B
LYS
216
B
LYS
16
HELX_P
B
THR
225
B
THR
25
1
10
10
B
GLU
262
B
GLU
62
HELX_P
B
TYR
264
B
TYR
64
5
11
3
B
ARG
268
B
ARG
68
HELX_P
B
LEU
270
B
LEU
70
5
12
3
B
PRO
287
B
PRO
87
HELX_P
B
GLU
295
B
GLU
95
1
13
9
B
TRP
297
B
TRP
97
HELX_P
B
HIS
304
B
HIS
104
1
14
8
B
ILE
317
B
ILE
117
HELX_P
B
LEU
319
B
LEU
119
5
15
3
B
THR
325
B
THR
125
HELX_P
B
LYS
328
B
LYS
128
1
16
4
B
PRO
339
B
PRO
139
HELX_P
B
LEU
349
B
LEU
149
1
17
11
B
LEU
365
B
LEU
165
HELX_P
B
ALA
376
B
ALA
176
1
18
12
B
GLU
381
B
GLU
181
HELX_P
B
LYS
383
B
LYS
183
5
19
3
disulf
2.028
A
CYS
105
A
SG
CYS
105
1_555
A
CYS
188
A
SG
CYS
188
1_555
disulf
2.026
B
CYS
305
B
SG
CYS
105
1_555
B
CYS
388
B
SG
CYS
188
1_555
metalc
2.326
A
THR
17
A
OG1
THR
17
1_555
A
MG
199
C
MG
MG
1_555
metalc
2.180
A
MG
199
C
MG
MG
1_555
A
GDP
200
D
O3B
GDP
1_555
metalc
3.102
A
MG
199
C
MG
MG
1_555
A
GDP
200
D
O1B
GDP
1_555
metalc
3.014
A
MG
199
C
MG
MG
1_555
A
HOH
1000
F
O
HOH
1_555
metalc
1.776
A
MG
199
C
MG
MG
1_555
A
HOH
1001
F
O
HOH
1_555
metalc
2.428
A
MG
199
C
MG
MG
1_555
A
HOH
1002
F
O
HOH
1_555
metalc
1.959
A
MG
199
C
MG
MG
1_555
A
HOH
1003
F
O
HOH
1_555
HYDROLASE
HYDROLASE, GTPASE, SIGNAL TRANSDUCTION
given
0.563300
0.824500
-0.053200
0.823100
-0.565600
-0.051100
-0.072200
-0.015000
-0.997300
2.46980
-4.05160
6.26700
CDC42_HUMAN
UNP
1
1
P60953
MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLV
CFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSAL
TQKGLKNVFDEAILAALEPPEPKKSRRCVLL
1
191
1A4R
1
191
P60953
A
1
1
191
1
191
1A4R
201
391
P60953
B
1
1
191
1
GLY
engineered mutation
VAL
12
1A4R
A
P60953
UNP
12
12
2
GLY
engineered mutation
VAL
212
1A4R
B
P60953
UNP
12
12
6
6
parallel
parallel
parallel
parallel
anti-parallel
parallel
parallel
parallel
parallel
anti-parallel
A
TYR
154
A
TYR
154
A
GLU
156
A
GLU
156
A
PRO
109
A
PRO
109
A
THR
115
A
THR
115
A
VAL
77
A
VAL
77
A
SER
83
A
SER
83
A
THR
3
A
THR
3
A
GLY
10
A
GLY
10
A
GLU
49
A
GLU
49
A
PHE
56
A
PHE
56
A
ASN
39
A
ASN
39
A
ILE
46
A
ILE
46
B
TYR
354
B
TYR
154
B
GLU
356
B
GLU
156
B
PRO
309
B
PRO
109
B
THR
315
B
THR
115
B
VAL
277
B
VAL
77
B
SER
283
B
SER
83
B
GLN
202
B
GLN
2
B
GLY
210
B
GLY
10
B
GLU
249
B
GLU
49
B
PHE
256
B
PHE
56
B
ASN
239
B
ASN
39
B
ILE
246
B
ILE
46
BINDING SITE FOR RESIDUE MG A 199
A
MG
199
Software
7
BINDING SITE FOR RESIDUE GDP A 200
A
GDP
200
Software
20
BINDING SITE FOR RESIDUE GNH B 400
B
GNH
400
Software
14
A
THR
17
A
THR
17
7
1_555
A
ASP
57
A
ASP
57
7
1_555
A
GDP
200
D
GDP
7
1_555
A
HOH
1000
F
HOH
7
1_555
A
HOH
1001
F
HOH
7
1_555
A
HOH
1002
F
HOH
7
1_555
A
HOH
1003
F
HOH
7
1_555
A
ASP
11
A
ASP
11
20
1_555
A
ALA
13
A
ALA
13
20
1_555
A
VAL
14
A
VAL
14
20
1_555
A
GLY
15
A
GLY
15
20
1_555
A
LYS
16
A
LYS
16
20
1_555
A
THR
17
A
THR
17
20
1_555
A
CYS
18
A
CYS
18
20
1_555
A
GLN
116
A
GLN
116
20
1_555
A
ASP
118
A
ASP
118
20
1_555
A
LEU
119
A
LEU
119
20
1_555
A
ARG
147
A
ARG
147
20
4_564
A
SER
158
A
SER
158
20
1_555
A
ALA
159
A
ALA
159
20
1_555
A
LEU
160
A
LEU
160
20
1_555
A
MG
199
C
MG
20
1_555
A
HOH
1001
F
HOH
20
1_555
A
HOH
1002
F
HOH
20
1_555
A
HOH
1006
F
HOH
20
1_555
A
HOH
1013
F
HOH
20
1_555
A
HOH
1045
F
HOH
20
1_555
B
VAL
212
B
VAL
12
14
1_555
B
ALA
213
B
ALA
13
14
1_555
B
GLY
215
B
GLY
15
14
1_555
B
LYS
216
B
LYS
16
14
1_555
B
THR
217
B
THR
17
14
1_555
B
CYS
218
B
CYS
18
14
1_555
B
PHE
228
B
PHE
28
14
1_555
B
GLN
316
B
GLN
116
14
1_555
B
ASP
318
B
ASP
118
14
1_555
B
LEU
319
B
LEU
119
14
1_555
B
ARG
347
B
ARG
147
14
3_645
B
SER
358
B
SER
158
14
1_555
B
ALA
359
B
ALA
159
14
1_555
B
LEU
360
B
LEU
160
14
1_555
92
P 41 21 2