1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 Dallas, A. Moore, P.B. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 1 90.00 90.00 90.00 1.000 1.000 1.000 C10 H14 N5 O7 P 347.221 y ADENOSINE-5'-MONOPHOSPHATE RNA linking C9 H14 N3 O8 P 323.197 y CYTIDINE-5'-MONOPHOSPHATE RNA linking C10 H14 N5 O8 P 363.221 y GUANOSINE-5'-MONOPHOSPHATE RNA linking C9 H13 N2 O9 P 324.181 y URIDINE-5'-MONOPHOSPHATE RNA linking UK Structure STRUE6 2005 0969-2126 5 1639 1653 10.1016/S0969-2126(97)00311-0 9438864 The loop E-loop D region of Escherichia coli 5S rRNA: the solution structure reveals an unusual loop that may be important for binding ribosomal proteins. 1997 10.2210/pdb1a51/pdb pdb_00001a51 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 13299.919 5S RRNA LOOP D/LOOP E LOOP D/LOOP E ARM 1 man polymer no no GGCCGAUGGUAGUGUGGGGUCUCCCCAUGCGAGAGUAGGCC GGCCGAUGGUAGUGUGGGGUCUCCCCAUGCGAGAGUAGGCC A polyribonucleotide n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Escherichia Escherichia sample CYTOPLASM 562 Escherichia coli 562 Escherichia coli JM101 PAD3 -0.600 1 19 A 68 A 108 0.410 A_G68:C108_A 1 -3.479 -0.394 0.043 -0.250 -2.016 1 19 A 69 A 107 0.791 A_G69:C107_A 2 0.245 -0.892 -0.115 -0.447 3.116 1 19 A 70 A 106 -0.448 A_C70:G106_A 3 -0.027 0.743 -0.219 -0.371 -5.038 1 19 A 71 A 105 2.351 A_C71:G105_A 4 -5.757 0.236 -0.279 -0.248 4.080 10 11 A 72 A 104 -4.157 A_G72:A104_A 5 -1.333 6.909 0.188 -3.933 2.884 4 24 A 73 A 103 -108.003 A_A73:U103_A 6 -10.184 -3.550 -0.023 -1.000 -4.942 2 A 74 A 102 -93.930 A_U74:G102_A 7 -7.955 -4.202 -0.425 0.992 -1.291 A 75 A 101 -70.262 A_G75:A101_A 8 -2.036 -2.011 -0.092 2.182 2.725 A 76 A 100 -95.071 A_G76:G100_A 9 0.241 4.433 -0.314 0.927 2.904 4 24 A 77 A 99 -94.504 A_U77:A99_A 10 -6.535 3.991 -0.477 -1.669 3.284 9 11 A 78 A 98 0.735 A_A78:G98_A 11 -0.220 -6.757 -0.148 -4.333 -2.535 1 19 A 79 A 97 1.697 A_G79:C97_A 12 -6.681 -0.822 -0.254 -0.440 3.385 1 28 A 80 A 96 -4.524 A_U80:G96_A 13 -7.621 1.531 0.450 -0.379 -10.725 1 28 A 81 A 95 -5.646 A_G81:U95_A 14 -8.760 -1.089 -1.078 -0.736 1.559 1 20 A 82 A 94 0.642 A_U82:A94_A 15 -6.516 0.062 0.077 -0.244 5.084 1 19 A 83 A 93 -8.434 A_G83:C93_A 16 -16.718 -0.397 0.888 -0.751 -0.551 1 19 A 84 A 92 -0.041 A_G84:C92_A 17 -9.955 -0.344 -0.066 -0.263 -6.994 1 19 A 85 A 91 1.449 A_G85:C91_A 18 -5.108 -0.979 -0.046 -0.450 -10.347 1 A 86 A 90 53.777 A_G86:C90_A 19 6.482 0.842 -1.197 2.197 2.298 40.541 A A 68 69 21.820 A A 108 107 3.083 14.795 0.173 -1.654 AA_G68G69:C107C108_AA 1 -1.258 1.855 37.831 -3.798 -0.369 2.505 39.020 A A 69 70 29.860 A A 107 106 3.111 19.141 -0.072 -0.480 AA_G69C70:G106C107_AA 2 0.935 -1.459 34.150 -2.848 0.211 2.490 37.526 A A 70 71 20.535 A A 106 105 3.311 12.953 0.205 -1.903 AA_C70C71:G105G106_AA 3 1.590 -2.520 35.260 -4.510 -0.128 3.053 60.089 A A 71 72 8.774 A A 105 104 3.078 8.760 -0.457 0.039 AA_C71G72:A104G105_AA 4 0.343 -0.343 59.505 -0.369 0.473 -1.284 -14.669 A A 72 73 11.314 A A 104 103 2.889 -2.698 -6.189 -0.634 AA_G72A73:U103A104_AA 5 -8.309 -34.835 -11.795 3.121 -26.207 2.759 57.445 A A 73 74 9.758 A A 103 102 3.276 9.344 0.836 -3.323 AA_A73U74:G102U103_AA 6 1.201 -1.254 56.733 -3.928 -0.809 3.080 39.561 A A 74 75 -1.453 A A 102 101 3.014 -0.983 1.251 -2.254 AA_U74G75:A101G102_AA 7 0.415 -0.614 39.548 -3.222 -1.804 3.247 59.720 A A 75 76 0.578 A A 101 100 3.277 0.575 -0.551 -2.712 AA_G75G76:G100A101_AA 8 0.688 -0.691 59.714 -2.752 0.588 3.378 46.046 A A 76 77 -5.261 A A 100 99 3.128 -4.102 -0.774 -2.322 AA_G76U77:A99G100_AA 9 -5.294 6.790 45.583 -2.616 0.535 3.465 -18.668 A A 77 78 -6.779 A A 99 98 3.134 2.193 5.492 -0.932 AA_U77A78:G98A99_AA 10 -0.845 -2.613 -18.521 1.685 16.471 3.166 66.009 A A 78 79 6.612 A A 98 97 3.251 7.187 -0.202 -0.777 AA_A78G79:C97G98_AA 11 -4.869 4.479 65.500 -0.999 -0.009 3.085 43.556 A A 79 80 2.892 A A 97 96 3.116 2.145 -0.366 -0.659 AA_G79U80:G96C97_AA 12 -0.390 0.526 43.504 -1.084 0.458 4.080 20.091 A A 80 81 -15.935 A A 96 95 4.025 -5.380 -0.418 -2.192 AA_U80G81:U95G96_AA 13 6.797 -20.132 18.142 -3.043 5.293 2.953 40.961 A A 81 82 -9.048 A A 95 94 2.976 -6.276 0.374 -0.821 AA_G81U82:A94U95_AA 14 -7.470 10.770 39.831 -0.543 -1.285 3.015 29.992 A A 82 83 -1.113 A A 94 93 2.933 -0.574 -0.620 -1.524 AA_U82G83:C93A94_AA 15 -3.711 7.189 29.762 -2.837 0.500 3.910 33.901 A A 83 84 -14.068 A A 93 92 3.638 -8.113 0.416 -1.500 AA_G83G84:C92C93_AA 16 3.641 -6.314 32.748 -1.041 -0.025 4.036 29.153 A A 84 85 -17.953 A A 92 91 3.695 -8.882 0.275 -1.871 AA_G84G85:C91C92_AA 17 -3.083 6.232 27.627 -1.363 -1.364 3.514 34.892 A A 85 86 10.923 A A 91 90 3.463 6.497 2.655 -1.076 AA_G85G86:C90C91_AA 18 4.463 -7.504 34.017 -2.859 -3.697 database_2 pdbx_database_status pdbx_struct_assembly pdbx_struct_oper_list repository Initial release Version format compliance Version format compliance Database references Derived calculations Other 1 0 1998-05-27 1 1 2008-03-24 1 2 2011-07-13 1 3 2022-02-16 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_database_status.process_site MINIMIZED AVERAGE STRUCTURE Y BNL 1998-02-19 REL REL NO NOE, DIHEDRAL VIOLATIONS, LOW OVERALL ENERGY STRUCTURES, GOOD LOCAL GEOMETRY 60 9 7.2 283 K 5.5 283 K FOR REFINEMENT DETAILS, SEE STRUCTURE,5,P.1639 TORSION ANGLE MOLECULAR DYNAMICS BRUNGER refinement X-PLOR structure solution X-PLOR 500 Varian UNITY 600 GE UNITYPLUS 600 GE OMEGA G 68 n 1 G 68 A G 69 n 2 G 69 A C 70 n 3 C 70 A C 71 n 4 C 71 A G 72 n 5 G 72 A A 73 n 6 A 73 A U 74 n 7 U 74 A G 75 n 8 G 75 A G 76 n 9 G 76 A U 77 n 10 U 77 A A 78 n 11 A 78 A G 79 n 12 G 79 A U 80 n 13 U 80 A G 81 n 14 G 81 A U 82 n 15 U 82 A G 83 n 16 G 83 A G 84 n 17 G 84 A G 85 n 18 G 85 A G 86 n 19 G 86 A U 87 n 20 U 87 A C 88 n 21 C 88 A U 89 n 22 U 89 A C 90 n 23 C 90 A C 91 n 24 C 91 A C 92 n 25 C 92 A C 93 n 26 C 93 A A 94 n 27 A 94 A U 95 n 28 U 95 A G 96 n 29 G 96 A C 97 n 30 C 97 A G 98 n 31 G 98 A A 99 n 32 A 99 A G 100 n 33 G 100 A A 101 n 34 A 101 A G 102 n 35 G 102 A U 103 n 36 U 103 A A 104 n 37 A 104 A G 105 n 38 G 105 A G 106 n 39 G 106 A C 107 n 40 C 107 A C 108 n 41 C 108 A author_defined_assembly 1 monomeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 1 A A O4 H1 U G 74 102 1.39 2 A A O4 H1 U G 74 102 1.50 3 A A O4 H1 U G 74 102 1.40 4 A A O4 H1 U G 74 102 1.47 5 A A O4 H1 U G 74 102 1.51 6 A A O4 H1 U G 74 102 1.43 7 A A O4 H1 U G 74 102 1.43 8 A A HO2' O2 C C 88 90 1.57 9 A A O4 H1 U G 74 102 1.41 model building X-PLOR refinement X-PLOR phasing X-PLOR LOOP D/LOOP E ARM OF E. COLI 5S RRNA, NMR, 9 STRUCTURES 1 N N hydrog WATSON-CRICK A G 68 A N1 G 1 1_555 A C 108 A N3 C 41 1_555 hydrog WATSON-CRICK A G 68 A N2 G 1 1_555 A C 108 A O2 C 41 1_555 hydrog WATSON-CRICK A G 68 A O6 G 1 1_555 A C 108 A N4 C 41 1_555 hydrog WATSON-CRICK A G 69 A N1 G 2 1_555 A C 107 A N3 C 40 1_555 hydrog WATSON-CRICK A G 69 A N2 G 2 1_555 A C 107 A O2 C 40 1_555 hydrog WATSON-CRICK A G 69 A O6 G 2 1_555 A C 107 A N4 C 40 1_555 hydrog WATSON-CRICK A C 70 A N3 C 3 1_555 A G 106 A N1 G 39 1_555 hydrog WATSON-CRICK A C 70 A N4 C 3 1_555 A G 106 A O6 G 39 1_555 hydrog WATSON-CRICK A C 70 A O2 C 3 1_555 A G 106 A N2 G 39 1_555 hydrog WATSON-CRICK A C 71 A N3 C 4 1_555 A G 105 A N1 G 38 1_555 hydrog WATSON-CRICK A C 71 A N4 C 4 1_555 A G 105 A O6 G 38 1_555 hydrog WATSON-CRICK A C 71 A O2 C 4 1_555 A G 105 A N2 G 38 1_555 hydrog TYPE_11_PAIR A G 72 A N2 G 5 1_555 A A 104 A N7 A 37 1_555 hydrog TYPE_11_PAIR A G 72 A N3 G 5 1_555 A A 104 A N6 A 37 1_555 hydrog REVERSED HOOGSTEEN A A 73 A N6 A 6 1_555 A U 103 A O2 U 36 1_555 hydrog REVERSED HOOGSTEEN A A 73 A N7 A 6 1_555 A U 103 A N3 U 36 1_555 hydrog U-G MISPAIR A U 74 A O4 U 7 1_555 A G 102 A N1 G 35 1_555 hydrog G-A MISPAIR A G 75 A O6 G 8 1_555 A A 101 A N6 A 34 1_555 hydrog G-G MISPAIR A G 76 A N1 G 9 1_555 A G 100 A O6 G 33 1_555 hydrog REVERSED HOOGSTEEN A U 77 A N3 U 10 1_555 A A 99 A N7 A 32 1_555 hydrog REVERSED HOOGSTEEN A U 77 A O2 U 10 1_555 A A 99 A N6 A 32 1_555 hydrog TYPE_11_PAIR A A 78 A N6 A 11 1_555 A G 98 A N3 G 31 1_555 hydrog TYPE_11_PAIR A A 78 A N7 A 11 1_555 A G 98 A N2 G 31 1_555 hydrog WATSON-CRICK A G 79 A N1 G 12 1_555 A C 97 A N3 C 30 1_555 hydrog WATSON-CRICK A G 79 A N2 G 12 1_555 A C 97 A O2 C 30 1_555 hydrog WATSON-CRICK A G 79 A O6 G 12 1_555 A C 97 A N4 C 30 1_555 hydrog TYPE_28_PAIR A U 80 A N3 U 13 1_555 A G 96 A O6 G 29 1_555 hydrog TYPE_28_PAIR A U 80 A O2 U 13 1_555 A G 96 A N1 G 29 1_555 hydrog TYPE_28_PAIR A G 81 A N1 G 14 1_555 A U 95 A O2 U 28 1_555 hydrog TYPE_28_PAIR A G 81 A O6 G 14 1_555 A U 95 A N3 U 28 1_555 hydrog WATSON-CRICK A U 82 A N3 U 15 1_555 A A 94 A N1 A 27 1_555 hydrog WATSON-CRICK A U 82 A O4 U 15 1_555 A A 94 A N6 A 27 1_555 hydrog WATSON-CRICK A G 83 A N1 G 16 1_555 A C 93 A N3 C 26 1_555 hydrog WATSON-CRICK A G 83 A N2 G 16 1_555 A C 93 A O2 C 26 1_555 hydrog WATSON-CRICK A G 83 A O6 G 16 1_555 A C 93 A N4 C 26 1_555 hydrog WATSON-CRICK A G 84 A N1 G 17 1_555 A C 92 A N3 C 25 1_555 hydrog WATSON-CRICK A G 84 A N2 G 17 1_555 A C 92 A O2 C 25 1_555 hydrog WATSON-CRICK A G 84 A O6 G 17 1_555 A C 92 A N4 C 25 1_555 hydrog WATSON-CRICK A G 85 A N1 G 18 1_555 A C 91 A N3 C 24 1_555 hydrog WATSON-CRICK A G 85 A N2 G 18 1_555 A C 91 A O2 C 24 1_555 hydrog WATSON-CRICK A G 85 A O6 G 18 1_555 A C 91 A N4 C 24 1_555 hydrog G-C PAIR A G 86 A N2 G 19 1_555 A C 90 A O2 C 23 1_555 RNA 5S RRNA, INTERNAL LOOP, CROSS-STRAND STACK, TRANSLATION, RIBOSOME, RIBONUCLEIC ACID, RNA 1A51 PDB 1 1A51 68 108 1A51 68 108 1A51 A 1 1 41 1 P 1