1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Timkovich, R.
Bergmann, D.
Arciero, D.M.
Hooper, A.B.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
1
90.00
90.00
90.00
1.000
1.000
1.000
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C34 H34 Fe N4 O4
618.503
HEME C
non-polymer
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
US
Biophys.J.
BIOJAU
0030
0006-3495
75
1964
1972
9746537
Primary sequence and solution conformation of ferrocytochrome c-552 from Nitrosomonas europaea.
1998
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
8491.702
FERRICYTOCHROME C-552
1
nat
polymer
618.503
HEME C
1
syn
non-polymer
C-551
no
no
DADLAKKNNCIACHQVETKVVGPALKDIAAKYADKDDAATYLAGKIKGGSSGVWGQIPMPPNVNVSDADAKALADWILTL
K
DADLAKKNNCIACHQVETKVVGPALKDIAAKYADKDDAATYLAGKIKGGSSGVWGQIPMPPNVNVSDADAKALADWILTL
K
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Nitrosomonas
sample
915
Nitrosomonas europaea
pdbx_database_status
pdbx_nmr_software
pdbx_struct_assembly
pdbx_struct_oper_list
struct_conn
struct_site
repository
Initial release
Version format compliance
Version format compliance
Data collection
Derived calculations
Other
1
0
1998-10-21
1
1
2008-03-24
1
2
2011-07-13
1
3
2020-12-16
_pdbx_database_status.process_site
_pdbx_nmr_software.name
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
Y
BNL
1998-02-20
REL
HEC
HEME C
MINIMUM ENERGY
20
1
NOESY
TOCSY
COSY
0.05
6.9
1
atm
323
K
SEE JOURNAL CITATION
RESTRAINED DYNAMICS
WATER
BRUNGER
refinement
X-PLOR
3.851
structure solution
Felix
structure solution
X-PLOR
500
Bruker
AM500
HEC
1
2
HEC
HEC
82
A
ASP
1
n
1
ASP
1
A
ALA
2
n
2
ALA
2
A
ASP
3
n
3
ASP
3
A
LEU
4
n
4
LEU
4
A
ALA
5
n
5
ALA
5
A
LYS
6
n
6
LYS
6
A
LYS
7
n
7
LYS
7
A
ASN
8
n
8
ASN
8
A
ASN
9
n
9
ASN
9
A
CYS
10
n
10
CYS
10
A
ILE
11
n
11
ILE
11
A
ALA
12
n
12
ALA
12
A
CYS
13
n
13
CYS
13
A
HIS
14
n
14
HIS
14
A
GLN
15
n
15
GLN
15
A
VAL
16
n
16
VAL
16
A
GLU
17
n
17
GLU
17
A
THR
18
n
18
THR
18
A
LYS
19
n
19
LYS
19
A
VAL
20
n
20
VAL
20
A
VAL
21
n
21
VAL
21
A
GLY
22
n
22
GLY
22
A
PRO
23
n
23
PRO
23
A
ALA
24
n
24
ALA
24
A
LEU
25
n
25
LEU
25
A
LYS
26
n
26
LYS
26
A
ASP
27
n
27
ASP
27
A
ILE
28
n
28
ILE
28
A
ALA
29
n
29
ALA
29
A
ALA
30
n
30
ALA
30
A
LYS
31
n
31
LYS
31
A
TYR
32
n
32
TYR
32
A
ALA
33
n
33
ALA
33
A
ASP
34
n
34
ASP
34
A
LYS
35
n
35
LYS
35
A
ASP
36
n
36
ASP
36
A
ASP
37
n
37
ASP
37
A
ALA
38
n
38
ALA
38
A
ALA
39
n
39
ALA
39
A
THR
40
n
40
THR
40
A
TYR
41
n
41
TYR
41
A
LEU
42
n
42
LEU
42
A
ALA
43
n
43
ALA
43
A
GLY
44
n
44
GLY
44
A
LYS
45
n
45
LYS
45
A
ILE
46
n
46
ILE
46
A
LYS
47
n
47
LYS
47
A
GLY
48
n
48
GLY
48
A
GLY
49
n
49
GLY
49
A
SER
50
n
50
SER
50
A
SER
51
n
51
SER
51
A
GLY
52
n
52
GLY
52
A
VAL
53
n
53
VAL
53
A
TRP
54
n
54
TRP
54
A
GLY
55
n
55
GLY
55
A
GLN
56
n
56
GLN
56
A
ILE
57
n
57
ILE
57
A
PRO
58
n
58
PRO
58
A
MET
59
n
59
MET
59
A
PRO
60
n
60
PRO
60
A
PRO
61
n
61
PRO
61
A
ASN
62
n
62
ASN
62
A
VAL
63
n
63
VAL
63
A
ASN
64
n
64
ASN
64
A
VAL
65
n
65
VAL
65
A
SER
66
n
66
SER
66
A
ASP
67
n
67
ASP
67
A
ALA
68
n
68
ALA
68
A
ASP
69
n
69
ASP
69
A
ALA
70
n
70
ALA
70
A
LYS
71
n
71
LYS
71
A
ALA
72
n
72
ALA
72
A
LEU
73
n
73
LEU
73
A
ALA
74
n
74
ALA
74
A
ASP
75
n
75
ASP
75
A
TRP
76
n
76
TRP
76
A
ILE
77
n
77
ILE
77
A
LEU
78
n
78
LEU
78
A
THR
79
n
79
THR
79
A
LEU
80
n
80
LEU
80
A
LYS
81
n
81
LYS
81
A
author_defined_assembly
1
monomeric
A
HIS
14
A
NE2
HIS
14
1_555
A
HEC
82
B
FE
HEC
1_555
A
HEC
82
B
NA
HEC
1_555
90.1
A
HIS
14
A
NE2
HIS
14
1_555
A
HEC
82
B
FE
HEC
1_555
A
HEC
82
B
NB
HEC
1_555
89.2
A
HEC
82
B
NA
HEC
1_555
A
HEC
82
B
FE
HEC
1_555
A
HEC
82
B
NB
HEC
1_555
90.0
A
HIS
14
A
NE2
HIS
14
1_555
A
HEC
82
B
FE
HEC
1_555
A
HEC
82
B
NC
HEC
1_555
89.7
A
HEC
82
B
NA
HEC
1_555
A
HEC
82
B
FE
HEC
1_555
A
HEC
82
B
NC
HEC
1_555
179.7
A
HEC
82
B
NB
HEC
1_555
A
HEC
82
B
FE
HEC
1_555
A
HEC
82
B
NC
HEC
1_555
89.9
A
HIS
14
A
NE2
HIS
14
1_555
A
HEC
82
B
FE
HEC
1_555
A
HEC
82
B
ND
HEC
1_555
90.1
A
HEC
82
B
NA
HEC
1_555
A
HEC
82
B
FE
HEC
1_555
A
HEC
82
B
ND
HEC
1_555
90.1
A
HEC
82
B
NB
HEC
1_555
A
HEC
82
B
FE
HEC
1_555
A
HEC
82
B
ND
HEC
1_555
179.3
A
HEC
82
B
NC
HEC
1_555
A
HEC
82
B
FE
HEC
1_555
A
HEC
82
B
ND
HEC
1_555
90.0
A
HIS
14
A
NE2
HIS
14
1_555
A
HEC
82
B
FE
HEC
1_555
A
MET
59
A
SD
MET
59
1_555
179.4
A
HEC
82
B
NA
HEC
1_555
A
HEC
82
B
FE
HEC
1_555
A
MET
59
A
SD
MET
59
1_555
89.7
A
HEC
82
B
NB
HEC
1_555
A
HEC
82
B
FE
HEC
1_555
A
MET
59
A
SD
MET
59
1_555
90.3
A
HEC
82
B
NC
HEC
1_555
A
HEC
82
B
FE
HEC
1_555
A
MET
59
A
SD
MET
59
1_555
90.5
A
HEC
82
B
ND
HEC
1_555
A
HEC
82
B
FE
HEC
1_555
A
MET
59
A
SD
MET
59
1_555
90.4
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
identity operation
0.0000000000
0.0000000000
0.0000000000
1
A
A
O
H
TYR
GLY
41
44
1.56
1
A
ASN
8
-99.01
-88.74
1
A
ASN
9
-160.90
-32.22
1
A
GLN
15
-79.71
-168.56
1
A
VAL
21
-93.15
-64.35
1
A
ALA
33
-88.65
41.16
1
A
LYS
35
-114.14
-99.44
1
A
ASP
36
-90.08
-131.24
1
A
ASP
37
-87.63
34.21
1
A
GLN
56
-80.11
-157.38
1
A
VAL
63
-65.76
-72.79
1
A
ASN
64
-154.49
-59.30
1
A
VAL
65
-160.04
-82.74
1
A
SER
66
-139.34
-121.42
1
A
ASP
67
-90.30
-83.69
model building
X-PLOR
3.851
refinement
X-PLOR
3.851
phasing
X-PLOR
3.851
FERRICYTOCHROME C-552, HEME C
PRIMARY SEQUENCE AND SOLUTION CONFORMATION OF FERRICYTOCHROME C-552 FROM NITROSOMONAS EUROPAEA, NMR, MEAN STRUCTURE REFINED WITH EXPLICIT HYDROGEN BOND CONSTRAINTS
1
Y
N
2
N
N
A
ALA
2
A
ALA
2
HELX_P
A
ASN
8
A
ASN
8
1
1
7
A
LEU
25
A
LEU
25
HELX_P
A
TYR
32
A
TYR
32
1
2
8
A
ALA
38
A
ALA
38
HELX_P
A
GLY
48
A
GLY
48
1
3
11
A
ALA
68
A
ALA
68
HELX_P
A
THR
79
A
THR
79
1
4
12
covale
1.816
none
A
CYS
10
A
SG
CYS
10
1_555
A
HEC
82
B
CAB
HEC
1_555
covale
1.811
none
A
CYS
13
A
SG
CYS
13
1_555
A
HEC
82
B
CAC
HEC
1_555
metalc
1.952
A
HIS
14
A
NE2
HIS
14
1_555
A
HEC
82
B
FE
HEC
1_555
metalc
2.376
A
MET
59
A
SD
MET
59
1_555
A
HEC
82
B
FE
HEC
1_555
hydrog
A
ALA
5
A
N
ALA
5
1_555
A
ASP
1
A
O
ASP
1
1_555
hydrog
A
LYS
6
A
N
LYS
6
1_555
A
ALA
2
A
O
ALA
2
1_555
hydrog
A
LYS
7
A
N
LYS
7
1_555
A
ASP
3
A
O
ASP
3
1_555
hydrog
A
ASN
8
A
N
ASN
8
1_555
A
LEU
4
A
O
LEU
4
1_555
hydrog
A
ASN
9
A
N
ASN
9
1_555
A
ALA
5
A
O
ALA
5
1_555
hydrog
A
CYS
13
A
N
CYS
13
1_555
A
ASN
9
A
O
ASN
9
1_555
hydrog
A
HIS
14
A
N
HIS
14
1_555
A
CYS
10
A
O
CYS
10
1_555
hydrog
A
ALA
29
A
N
ALA
29
1_555
A
LEU
25
A
O
LEU
25
1_555
hydrog
A
ALA
30
A
N
ALA
30
1_555
A
LYS
26
A
O
LYS
26
1_555
hydrog
A
LYS
31
A
N
LYS
31
1_555
A
ASP
27
A
O
ASP
27
1_555
hydrog
A
TYR
32
A
N
TYR
32
1_555
A
ILE
28
A
O
ILE
28
1_555
hydrog
A
ALA
33
A
N
ALA
33
1_555
A
ALA
29
A
O
ALA
29
1_555
hydrog
A
TYR
41
A
N
TYR
41
1_555
A
ASP
37
A
O
ASP
37
1_555
hydrog
A
LEU
42
A
N
LEU
42
1_555
A
ALA
38
A
O
ALA
38
1_555
hydrog
A
ALA
43
A
N
ALA
43
1_555
A
ALA
39
A
O
ALA
39
1_555
hydrog
A
GLY
44
A
N
GLY
44
1_555
A
THR
40
A
O
THR
40
1_555
hydrog
A
LYS
45
A
N
LYS
45
1_555
A
TYR
41
A
O
TYR
41
1_555
hydrog
A
ILE
46
A
N
ILE
46
1_555
A
LEU
42
A
O
LEU
42
1_555
hydrog
A
LYS
47
A
N
LYS
47
1_555
A
ALA
43
A
O
ALA
43
1_555
hydrog
A
GLY
48
A
N
GLY
48
1_555
A
GLY
44
A
O
GLY
44
1_555
hydrog
A
GLY
49
A
N
GLY
49
1_555
A
LYS
45
A
O
LYS
45
1_555
hydrog
A
LYS
71
A
N
LYS
71
1_555
A
ASP
67
A
O
ASP
67
1_555
hydrog
A
ALA
72
A
N
ALA
72
1_555
A
ALA
68
A
O
ALA
68
1_555
hydrog
A
LEU
73
A
N
LEU
73
1_555
A
ASP
69
A
O
ASP
69
1_555
hydrog
A
ALA
74
A
N
ALA
74
1_555
A
ALA
70
A
O
ALA
70
1_555
hydrog
A
ASP
75
A
N
ASP
75
1_555
A
LYS
71
A
O
LYS
71
1_555
hydrog
A
TRP
76
A
N
TRP
76
1_555
A
ALA
72
A
O
ALA
72
1_555
hydrog
A
ILE
77
A
N
ILE
77
1_555
A
LEU
73
A
O
LEU
73
1_555
hydrog
A
LEU
78
A
N
LEU
78
1_555
A
ALA
74
A
O
ALA
74
1_555
hydrog
A
THR
79
A
N
THR
79
1_555
A
ASP
75
A
O
ASP
75
1_555
hydrog
A
LEU
80
A
N
LEU
80
1_555
A
TRP
76
A
O
TRP
76
1_555
hydrog
A
LYS
81
A
N
LYS
81
1_555
A
ILE
77
A
O
ILE
77
1_555
HEMOPROTEIN
HEMOPROTEIN, CYTOCHROME, PROKARYOTIC ELECTRON TRANSPORT
C552_NITEU
UNP
1
1
P95339
MKTAWLGTFAGSALLVAGYAQADADLAKKNNCIACHQVETKVVGPALKDIAAKYADKDDAATYLAGKIKGGSSGVWGQIP
MPPNVNVSDADAKALADWILTLK
23
103
1A56
1
81
P95339
A
1
1
81
BINDING SITE FOR RESIDUE HEC A 82
A
HEC
82
Software
20
A
ASN
9
A
ASN
9
20
1_555
A
CYS
10
A
CYS
10
20
1_555
A
CYS
13
A
CYS
13
20
1_555
A
HIS
14
A
HIS
14
20
1_555
A
VAL
21
A
VAL
21
20
1_555
A
GLY
22
A
GLY
22
20
1_555
A
PRO
23
A
PRO
23
20
1_555
A
LYS
45
A
LYS
45
20
1_555
A
ILE
46
A
ILE
46
20
1_555
A
SER
50
A
SER
50
20
1_555
A
SER
51
A
SER
51
20
1_555
A
VAL
53
A
VAL
53
20
1_555
A
TRP
54
A
TRP
54
20
1_555
A
GLY
55
A
GLY
55
20
1_555
A
GLN
56
A
GLN
56
20
1_555
A
ILE
57
A
ILE
57
20
1_555
A
MET
59
A
MET
59
20
1_555
A
ASN
62
A
ASN
62
20
1_555
A
VAL
63
A
VAL
63
20
1_555
A
ASN
64
A
ASN
64
20
1_555
1
P 1