1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 Timkovich, R. Bergmann, D. Arciero, D.M. Hooper, A.B. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 1 90.00 90.00 90.00 1.000 1.000 1.000 C3 H7 N O2 89.093 y ALANINE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C34 H34 Fe N4 O4 618.503 HEME C non-polymer C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking US Biophys.J. BIOJAU 0030 0006-3495 75 1964 1972 9746537 Primary sequence and solution conformation of ferrocytochrome c-552 from Nitrosomonas europaea. 1998 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 8491.702 FERRICYTOCHROME C-552 1 nat polymer 618.503 HEME C 1 syn non-polymer C-551 no no DADLAKKNNCIACHQVETKVVGPALKDIAAKYADKDDAATYLAGKIKGGSSGVWGQIPMPPNVNVSDADAKALADWILTL K DADLAKKNNCIACHQVETKVVGPALKDIAAKYADKDDAATYLAGKIKGGSSGVWGQIPMPPNVNVSDADAKALADWILTL K A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Nitrosomonas sample 915 Nitrosomonas europaea pdbx_database_status pdbx_nmr_software pdbx_struct_assembly pdbx_struct_oper_list struct_conn struct_site repository Initial release Version format compliance Version format compliance Data collection Derived calculations Other 1 0 1998-10-21 1 1 2008-03-24 1 2 2011-07-13 1 3 2020-12-16 _pdbx_database_status.process_site _pdbx_nmr_software.name _struct_conn.pdbx_leaving_atom_flag _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id Y BNL 1998-02-20 REL HEC HEME C MINIMUM ENERGY 20 1 NOESY TOCSY COSY 0.05 6.9 1 atm 323 K SEE JOURNAL CITATION RESTRAINED DYNAMICS WATER BRUNGER refinement X-PLOR 3.851 structure solution Felix structure solution X-PLOR 500 Bruker AM500 HEC 1 2 HEC HEC 82 A ASP 1 n 1 ASP 1 A ALA 2 n 2 ALA 2 A ASP 3 n 3 ASP 3 A LEU 4 n 4 LEU 4 A ALA 5 n 5 ALA 5 A LYS 6 n 6 LYS 6 A LYS 7 n 7 LYS 7 A ASN 8 n 8 ASN 8 A ASN 9 n 9 ASN 9 A CYS 10 n 10 CYS 10 A ILE 11 n 11 ILE 11 A ALA 12 n 12 ALA 12 A CYS 13 n 13 CYS 13 A HIS 14 n 14 HIS 14 A GLN 15 n 15 GLN 15 A VAL 16 n 16 VAL 16 A GLU 17 n 17 GLU 17 A THR 18 n 18 THR 18 A LYS 19 n 19 LYS 19 A VAL 20 n 20 VAL 20 A VAL 21 n 21 VAL 21 A GLY 22 n 22 GLY 22 A PRO 23 n 23 PRO 23 A ALA 24 n 24 ALA 24 A LEU 25 n 25 LEU 25 A LYS 26 n 26 LYS 26 A ASP 27 n 27 ASP 27 A ILE 28 n 28 ILE 28 A ALA 29 n 29 ALA 29 A ALA 30 n 30 ALA 30 A LYS 31 n 31 LYS 31 A TYR 32 n 32 TYR 32 A ALA 33 n 33 ALA 33 A ASP 34 n 34 ASP 34 A LYS 35 n 35 LYS 35 A ASP 36 n 36 ASP 36 A ASP 37 n 37 ASP 37 A ALA 38 n 38 ALA 38 A ALA 39 n 39 ALA 39 A THR 40 n 40 THR 40 A TYR 41 n 41 TYR 41 A LEU 42 n 42 LEU 42 A ALA 43 n 43 ALA 43 A GLY 44 n 44 GLY 44 A LYS 45 n 45 LYS 45 A ILE 46 n 46 ILE 46 A LYS 47 n 47 LYS 47 A GLY 48 n 48 GLY 48 A GLY 49 n 49 GLY 49 A SER 50 n 50 SER 50 A SER 51 n 51 SER 51 A GLY 52 n 52 GLY 52 A VAL 53 n 53 VAL 53 A TRP 54 n 54 TRP 54 A GLY 55 n 55 GLY 55 A GLN 56 n 56 GLN 56 A ILE 57 n 57 ILE 57 A PRO 58 n 58 PRO 58 A MET 59 n 59 MET 59 A PRO 60 n 60 PRO 60 A PRO 61 n 61 PRO 61 A ASN 62 n 62 ASN 62 A VAL 63 n 63 VAL 63 A ASN 64 n 64 ASN 64 A VAL 65 n 65 VAL 65 A SER 66 n 66 SER 66 A ASP 67 n 67 ASP 67 A ALA 68 n 68 ALA 68 A ASP 69 n 69 ASP 69 A ALA 70 n 70 ALA 70 A LYS 71 n 71 LYS 71 A ALA 72 n 72 ALA 72 A LEU 73 n 73 LEU 73 A ALA 74 n 74 ALA 74 A ASP 75 n 75 ASP 75 A TRP 76 n 76 TRP 76 A ILE 77 n 77 ILE 77 A LEU 78 n 78 LEU 78 A THR 79 n 79 THR 79 A LEU 80 n 80 LEU 80 A LYS 81 n 81 LYS 81 A author_defined_assembly 1 monomeric A HIS 14 A NE2 HIS 14 1_555 A HEC 82 B FE HEC 1_555 A HEC 82 B NA HEC 1_555 90.1 A HIS 14 A NE2 HIS 14 1_555 A HEC 82 B FE HEC 1_555 A HEC 82 B NB HEC 1_555 89.2 A HEC 82 B NA HEC 1_555 A HEC 82 B FE HEC 1_555 A HEC 82 B NB HEC 1_555 90.0 A HIS 14 A NE2 HIS 14 1_555 A HEC 82 B FE HEC 1_555 A HEC 82 B NC HEC 1_555 89.7 A HEC 82 B NA HEC 1_555 A HEC 82 B FE HEC 1_555 A HEC 82 B NC HEC 1_555 179.7 A HEC 82 B NB HEC 1_555 A HEC 82 B FE HEC 1_555 A HEC 82 B NC HEC 1_555 89.9 A HIS 14 A NE2 HIS 14 1_555 A HEC 82 B FE HEC 1_555 A HEC 82 B ND HEC 1_555 90.1 A HEC 82 B NA HEC 1_555 A HEC 82 B FE HEC 1_555 A HEC 82 B ND HEC 1_555 90.1 A HEC 82 B NB HEC 1_555 A HEC 82 B FE HEC 1_555 A HEC 82 B ND HEC 1_555 179.3 A HEC 82 B NC HEC 1_555 A HEC 82 B FE HEC 1_555 A HEC 82 B ND HEC 1_555 90.0 A HIS 14 A NE2 HIS 14 1_555 A HEC 82 B FE HEC 1_555 A MET 59 A SD MET 59 1_555 179.4 A HEC 82 B NA HEC 1_555 A HEC 82 B FE HEC 1_555 A MET 59 A SD MET 59 1_555 89.7 A HEC 82 B NB HEC 1_555 A HEC 82 B FE HEC 1_555 A MET 59 A SD MET 59 1_555 90.3 A HEC 82 B NC HEC 1_555 A HEC 82 B FE HEC 1_555 A MET 59 A SD MET 59 1_555 90.5 A HEC 82 B ND HEC 1_555 A HEC 82 B FE HEC 1_555 A MET 59 A SD MET 59 1_555 90.4 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 identity operation 0.0000000000 0.0000000000 0.0000000000 1 A A O H TYR GLY 41 44 1.56 1 A ASN 8 -99.01 -88.74 1 A ASN 9 -160.90 -32.22 1 A GLN 15 -79.71 -168.56 1 A VAL 21 -93.15 -64.35 1 A ALA 33 -88.65 41.16 1 A LYS 35 -114.14 -99.44 1 A ASP 36 -90.08 -131.24 1 A ASP 37 -87.63 34.21 1 A GLN 56 -80.11 -157.38 1 A VAL 63 -65.76 -72.79 1 A ASN 64 -154.49 -59.30 1 A VAL 65 -160.04 -82.74 1 A SER 66 -139.34 -121.42 1 A ASP 67 -90.30 -83.69 model building X-PLOR 3.851 refinement X-PLOR 3.851 phasing X-PLOR 3.851 FERRICYTOCHROME C-552, HEME C PRIMARY SEQUENCE AND SOLUTION CONFORMATION OF FERRICYTOCHROME C-552 FROM NITROSOMONAS EUROPAEA, NMR, MEAN STRUCTURE REFINED WITH EXPLICIT HYDROGEN BOND CONSTRAINTS 1 Y N 2 N N A ALA 2 A ALA 2 HELX_P A ASN 8 A ASN 8 1 1 7 A LEU 25 A LEU 25 HELX_P A TYR 32 A TYR 32 1 2 8 A ALA 38 A ALA 38 HELX_P A GLY 48 A GLY 48 1 3 11 A ALA 68 A ALA 68 HELX_P A THR 79 A THR 79 1 4 12 covale 1.816 none A CYS 10 A SG CYS 10 1_555 A HEC 82 B CAB HEC 1_555 covale 1.811 none A CYS 13 A SG CYS 13 1_555 A HEC 82 B CAC HEC 1_555 metalc 1.952 A HIS 14 A NE2 HIS 14 1_555 A HEC 82 B FE HEC 1_555 metalc 2.376 A MET 59 A SD MET 59 1_555 A HEC 82 B FE HEC 1_555 hydrog A ALA 5 A N ALA 5 1_555 A ASP 1 A O ASP 1 1_555 hydrog A LYS 6 A N LYS 6 1_555 A ALA 2 A O ALA 2 1_555 hydrog A LYS 7 A N LYS 7 1_555 A ASP 3 A O ASP 3 1_555 hydrog A ASN 8 A N ASN 8 1_555 A LEU 4 A O LEU 4 1_555 hydrog A ASN 9 A N ASN 9 1_555 A ALA 5 A O ALA 5 1_555 hydrog A CYS 13 A N CYS 13 1_555 A ASN 9 A O ASN 9 1_555 hydrog A HIS 14 A N HIS 14 1_555 A CYS 10 A O CYS 10 1_555 hydrog A ALA 29 A N ALA 29 1_555 A LEU 25 A O LEU 25 1_555 hydrog A ALA 30 A N ALA 30 1_555 A LYS 26 A O LYS 26 1_555 hydrog A LYS 31 A N LYS 31 1_555 A ASP 27 A O ASP 27 1_555 hydrog A TYR 32 A N TYR 32 1_555 A ILE 28 A O ILE 28 1_555 hydrog A ALA 33 A N ALA 33 1_555 A ALA 29 A O ALA 29 1_555 hydrog A TYR 41 A N TYR 41 1_555 A ASP 37 A O ASP 37 1_555 hydrog A LEU 42 A N LEU 42 1_555 A ALA 38 A O ALA 38 1_555 hydrog A ALA 43 A N ALA 43 1_555 A ALA 39 A O ALA 39 1_555 hydrog A GLY 44 A N GLY 44 1_555 A THR 40 A O THR 40 1_555 hydrog A LYS 45 A N LYS 45 1_555 A TYR 41 A O TYR 41 1_555 hydrog A ILE 46 A N ILE 46 1_555 A LEU 42 A O LEU 42 1_555 hydrog A LYS 47 A N LYS 47 1_555 A ALA 43 A O ALA 43 1_555 hydrog A GLY 48 A N GLY 48 1_555 A GLY 44 A O GLY 44 1_555 hydrog A GLY 49 A N GLY 49 1_555 A LYS 45 A O LYS 45 1_555 hydrog A LYS 71 A N LYS 71 1_555 A ASP 67 A O ASP 67 1_555 hydrog A ALA 72 A N ALA 72 1_555 A ALA 68 A O ALA 68 1_555 hydrog A LEU 73 A N LEU 73 1_555 A ASP 69 A O ASP 69 1_555 hydrog A ALA 74 A N ALA 74 1_555 A ALA 70 A O ALA 70 1_555 hydrog A ASP 75 A N ASP 75 1_555 A LYS 71 A O LYS 71 1_555 hydrog A TRP 76 A N TRP 76 1_555 A ALA 72 A O ALA 72 1_555 hydrog A ILE 77 A N ILE 77 1_555 A LEU 73 A O LEU 73 1_555 hydrog A LEU 78 A N LEU 78 1_555 A ALA 74 A O ALA 74 1_555 hydrog A THR 79 A N THR 79 1_555 A ASP 75 A O ASP 75 1_555 hydrog A LEU 80 A N LEU 80 1_555 A TRP 76 A O TRP 76 1_555 hydrog A LYS 81 A N LYS 81 1_555 A ILE 77 A O ILE 77 1_555 HEMOPROTEIN HEMOPROTEIN, CYTOCHROME, PROKARYOTIC ELECTRON TRANSPORT C552_NITEU UNP 1 1 P95339 MKTAWLGTFAGSALLVAGYAQADADLAKKNNCIACHQVETKVVGPALKDIAAKYADKDDAATYLAGKIKGGSSGVWGQIP MPPNVNVSDADAKALADWILTLK 23 103 1A56 1 81 P95339 A 1 1 81 BINDING SITE FOR RESIDUE HEC A 82 A HEC 82 Software 20 A ASN 9 A ASN 9 20 1_555 A CYS 10 A CYS 10 20 1_555 A CYS 13 A CYS 13 20 1_555 A HIS 14 A HIS 14 20 1_555 A VAL 21 A VAL 21 20 1_555 A GLY 22 A GLY 22 20 1_555 A PRO 23 A PRO 23 20 1_555 A LYS 45 A LYS 45 20 1_555 A ILE 46 A ILE 46 20 1_555 A SER 50 A SER 50 20 1_555 A SER 51 A SER 51 20 1_555 A VAL 53 A VAL 53 20 1_555 A TRP 54 A TRP 54 20 1_555 A GLY 55 A GLY 55 20 1_555 A GLN 56 A GLN 56 20 1_555 A ILE 57 A ILE 57 20 1_555 A MET 59 A MET 59 20 1_555 A ASN 62 A ASN 62 20 1_555 A VAL 63 A VAL 63 20 1_555 A ASN 64 A ASN 64 20 1_555 1 P 1