0.022492
0.000000
0.000000
0.000000
0.011935
0.000000
0.000000
0.000000
0.007550
0.00000
0.00000
0.00000
Rodriguez-Romero, A.
Almog, O.
Tordova, M.
Randhawa, Z.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.00
90.00
90.00
44.460
83.790
132.450
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
US
J.Biol.Chem.
JBCHA3
0071
0021-9258
273
11770
11775
10.1074/jbc.273.19.11770
9565600
Primary and tertiary structures of the Fab fragment of a monoclonal anti-E-selectin 7A9 antibody that inhibits neutrophil attachment to endothelial cells.
1998
10.2210/pdb1a5f/pdb
pdb_00001a5f
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
293
1
COLLIMATOR
AREA DETECTOR
1995-05
SIEMENS
GRAPHITE(002)
M
x-ray
1
1.5418
1.0
1.5418
ROTATING ANODE
RIGAKU RUH2R
24286.814
MONOCLONAL ANTI-E-SELECTIN 7A9 ANTIBODY (LIGHT CHAIN)
FAB FRAGMENT
1
nat
polymer
23080.766
MONOCLONAL ANTI-E-SELECTIN 7A9 ANTIBODY (HEAVY CHAIN)
FAB FRAGMENT
1
nat
polymer
18.015
water
10
nat
water
no
no
DIVMTQSPSSLTVTTGEKVTMTCKSSQSLLNSGAQKNYLTWYQQKPGQSPKLLIYWASTRESGVPDRFTGSGSGTDFTLS
ISGVQAEDLAVYYCQNNYNYPLTFGAGTKLELKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSE
RQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNEC
DIVMTQSPSSLTVTTGEKVTMTCKSSQSLLNSGAQKNYLTWYQQKPGQSPKLLIYWASTRESGVPDRFTGSGSGTDFTLS
ISGVQAEDLAVYYCQNNYNYPLTFGAGTKLELKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSE
RQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNEC
L
polypeptide(L)
no
no
EVALQQSGAELVKPGASVKLSCAASGFTIKDAYMHWVKQKPEQGLEWIGRIDSGSSNTNYDPTFKGKATITADDSSNTAY
LQMSSLTSEDTAVYYCARVGLSYWYAMDYWGQGTSVTVSSAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVT
WNSGSLSSGVHTFPAVLQSDLYTLSSSVSVPTSTETVTCNVAHAPSSTKVDKKIVPR
EVALQQSGAELVKPGASVKLSCAASGFTIKDAYMHWVKQKPEQGLEWIGRIDSGSSNTNYDPTFKGKATITADDSSNTAY
LQMSSLTSEDTAVYYCARVGLSYWYAMDYWGQGTSVTVSSAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVT
WNSGSLSSGVHTFPAVLQSDLYTLSSSVSVPTSTETVTCNVAHAPSSTKVDKKIVPR
H
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
house mouse
Mus
sample
SP-20 FUSION MOUSE-MOUSE HYBRIDOMA
10090
Mus musculus
house mouse
Mus
sample
SP-20 FUSION MOUSE-MOUSE HYBRIDOMA
10090
Mus musculus
1
2.6
53.0
7.0
pH 7.0
database_2
pdbx_database_status
pdbx_initial_refinement_model
struct_ref_seq_dif
repository
Initial release
Version format compliance
Version format compliance
Database references
Other
Refinement description
1
0
1999-04-20
1
1
2008-03-24
1
2
2011-07-13
1
3
2023-08-02
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_database_status.process_site
_struct_ref_seq_dif.details
Y
BNL
1998-02-16
REL
REL
HOH
water
1BBD
PDB ENTRY 1BBD
PDB
experimental model
HOH
702
3
HOH
HOH
702
L
HOH
704
3
HOH
HOH
704
L
HOH
705
3
HOH
HOH
705
L
HOH
707
3
HOH
HOH
707
L
HOH
710
3
HOH
HOH
710
L
HOH
701
3
HOH
HOH
701
H
HOH
703
3
HOH
HOH
703
H
HOH
706
3
HOH
HOH
706
H
HOH
708
3
HOH
HOH
708
H
HOH
709
3
HOH
HOH
709
H
ASP
1
n
1
ASP
1
L
ILE
2
n
2
ILE
2
L
VAL
3
n
3
VAL
3
L
MET
4
n
4
MET
4
L
THR
5
n
5
THR
5
L
GLN
6
n
6
GLN
6
L
SER
7
n
7
SER
7
L
PRO
8
n
8
PRO
8
L
SER
9
n
9
SER
9
L
SER
10
n
10
SER
10
L
LEU
11
n
11
LEU
11
L
THR
12
n
12
THR
12
L
VAL
13
n
13
VAL
13
L
THR
14
n
14
THR
14
L
THR
15
n
15
THR
15
L
GLY
16
n
16
GLY
16
L
GLU
17
n
17
GLU
17
L
LYS
18
n
18
LYS
18
L
VAL
19
n
19
VAL
19
L
THR
20
n
20
THR
20
L
MET
21
n
21
MET
21
L
THR
22
n
22
THR
22
L
CYS
23
n
23
CYS
23
L
LYS
24
n
24
LYS
24
L
SER
25
n
25
SER
25
L
SER
26
n
26
SER
26
L
GLN
27
n
27
GLN
27
L
SER
28
n
28
SER
28
L
LEU
29
n
29
LEU
29
L
LEU
30
n
30
LEU
30
L
ASN
31
n
31
ASN
31
L
SER
32
n
32
SER
32
L
GLY
33
n
33
GLY
33
L
ALA
34
n
34
ALA
34
L
GLN
35
n
35
GLN
35
L
LYS
36
n
36
LYS
36
L
ASN
37
n
37
ASN
37
L
TYR
38
n
38
TYR
38
L
LEU
39
n
39
LEU
39
L
THR
40
n
40
THR
40
L
TRP
41
n
41
TRP
41
L
TYR
42
n
42
TYR
42
L
GLN
43
n
43
GLN
43
L
GLN
44
n
44
GLN
44
L
LYS
45
n
45
LYS
45
L
PRO
46
n
46
PRO
46
L
GLY
47
n
47
GLY
47
L
GLN
48
n
48
GLN
48
L
SER
49
n
49
SER
49
L
PRO
50
n
50
PRO
50
L
LYS
51
n
51
LYS
51
L
LEU
52
n
52
LEU
52
L
LEU
53
n
53
LEU
53
L
ILE
54
n
54
ILE
54
L
TYR
55
n
55
TYR
55
L
TRP
56
n
56
TRP
56
L
ALA
57
n
57
ALA
57
L
SER
58
n
58
SER
58
L
THR
59
n
59
THR
59
L
ARG
60
n
60
ARG
60
L
GLU
61
n
61
GLU
61
L
SER
62
n
62
SER
62
L
GLY
63
n
63
GLY
63
L
VAL
64
n
64
VAL
64
L
PRO
65
n
65
PRO
65
L
ASP
66
n
66
ASP
66
L
ARG
67
n
67
ARG
67
L
PHE
68
n
68
PHE
68
L
THR
69
n
69
THR
69
L
GLY
70
n
70
GLY
70
L
SER
71
n
71
SER
71
L
GLY
72
n
72
GLY
72
L
SER
73
n
73
SER
73
L
GLY
74
n
74
GLY
74
L
THR
75
n
75
THR
75
L
ASP
76
n
76
ASP
76
L
PHE
77
n
77
PHE
77
L
THR
78
n
78
THR
78
L
LEU
79
n
79
LEU
79
L
SER
80
n
80
SER
80
L
ILE
81
n
81
ILE
81
L
SER
82
n
82
SER
82
L
GLY
83
n
83
GLY
83
L
VAL
84
n
84
VAL
84
L
GLN
85
n
85
GLN
85
L
ALA
86
n
86
ALA
86
L
GLU
87
n
87
GLU
87
L
ASP
88
n
88
ASP
88
L
LEU
89
n
89
LEU
89
L
ALA
90
n
90
ALA
90
L
VAL
91
n
91
VAL
91
L
TYR
92
n
92
TYR
92
L
TYR
93
n
93
TYR
93
L
CYS
94
n
94
CYS
94
L
GLN
95
n
95
GLN
95
L
ASN
96
n
96
ASN
96
L
ASN
97
n
97
ASN
97
L
TYR
98
n
98
TYR
98
L
ASN
99
n
99
ASN
99
L
TYR
100
n
100
TYR
100
L
PRO
101
n
101
PRO
101
L
LEU
102
n
102
LEU
102
L
THR
103
n
103
THR
103
L
PHE
104
n
104
PHE
104
L
GLY
105
n
105
GLY
105
L
ALA
106
n
106
ALA
106
L
GLY
107
n
107
GLY
107
L
THR
108
n
108
THR
108
L
LYS
109
n
109
LYS
109
L
LEU
110
n
110
LEU
110
L
GLU
111
n
111
GLU
111
L
LEU
112
n
112
LEU
112
L
LYS
113
n
113
LYS
113
L
ARG
114
n
114
ARG
114
L
ALA
115
n
115
ALA
115
L
ASP
116
n
116
ASP
116
L
ALA
117
n
117
ALA
117
L
ALA
118
n
118
ALA
118
L
PRO
119
n
119
PRO
119
L
THR
120
n
120
THR
120
L
VAL
121
n
121
VAL
121
L
SER
122
n
122
SER
122
L
ILE
123
n
123
ILE
123
L
PHE
124
n
124
PHE
124
L
PRO
125
n
125
PRO
125
L
PRO
126
n
126
PRO
126
L
SER
127
n
127
SER
127
L
SER
128
n
128
SER
128
L
GLU
129
n
129
GLU
129
L
GLN
130
n
130
GLN
130
L
LEU
131
n
131
LEU
131
L
THR
132
n
132
THR
132
L
SER
133
n
133
SER
133
L
GLY
134
n
134
GLY
134
L
GLY
135
n
135
GLY
135
L
ALA
136
n
136
ALA
136
L
SER
137
n
137
SER
137
L
VAL
138
n
138
VAL
138
L
VAL
139
n
139
VAL
139
L
CYS
140
n
140
CYS
140
L
PHE
141
n
141
PHE
141
L
LEU
142
n
142
LEU
142
L
ASN
143
n
143
ASN
143
L
ASN
144
n
144
ASN
144
L
PHE
145
n
145
PHE
145
L
TYR
146
n
146
TYR
146
L
PRO
147
n
147
PRO
147
L
LYS
148
n
148
LYS
148
L
ASP
149
n
149
ASP
149
L
ILE
150
n
150
ILE
150
L
ASN
151
n
151
ASN
151
L
VAL
152
n
152
VAL
152
L
LYS
153
n
153
LYS
153
L
TRP
154
n
154
TRP
154
L
LYS
155
n
155
LYS
155
L
ILE
156
n
156
ILE
156
L
ASP
157
n
157
ASP
157
L
GLY
158
n
158
GLY
158
L
SER
159
n
159
SER
159
L
GLU
160
n
160
GLU
160
L
ARG
161
n
161
ARG
161
L
GLN
162
n
162
GLN
162
L
ASN
163
n
163
ASN
163
L
GLY
164
n
164
GLY
164
L
VAL
165
n
165
VAL
165
L
LEU
166
n
166
LEU
166
L
ASN
167
n
167
ASN
167
L
SER
168
n
168
SER
168
L
TRP
169
n
169
TRP
169
L
THR
170
n
170
THR
170
L
ASP
171
n
171
ASP
171
L
GLN
172
n
172
GLN
172
L
ASP
173
n
173
ASP
173
L
SER
174
n
174
SER
174
L
LYS
175
n
175
LYS
175
L
ASP
176
n
176
ASP
176
L
SER
177
n
177
SER
177
L
THR
178
n
178
THR
178
L
TYR
179
n
179
TYR
179
L
SER
180
n
180
SER
180
L
MET
181
n
181
MET
181
L
SER
182
n
182
SER
182
L
SER
183
n
183
SER
183
L
THR
184
n
184
THR
184
L
LEU
185
n
185
LEU
185
L
THR
186
n
186
THR
186
L
LEU
187
n
187
LEU
187
L
THR
188
n
188
THR
188
L
LYS
189
n
189
LYS
189
L
ASP
190
n
190
ASP
190
L
GLU
191
n
191
GLU
191
L
TYR
192
n
192
TYR
192
L
GLU
193
n
193
GLU
193
L
ARG
194
n
194
ARG
194
L
HIS
195
n
195
HIS
195
L
ASN
196
n
196
ASN
196
L
SER
197
n
197
SER
197
L
TYR
198
n
198
TYR
198
L
THR
199
n
199
THR
199
L
CYS
200
n
200
CYS
200
L
GLU
201
n
201
GLU
201
L
ALA
202
n
202
ALA
202
L
THR
203
n
203
THR
203
L
HIS
204
n
204
HIS
204
L
LYS
205
n
205
LYS
205
L
THR
206
n
206
THR
206
L
SER
207
n
207
SER
207
L
THR
208
n
208
THR
208
L
SER
209
n
209
SER
209
L
PRO
210
n
210
PRO
210
L
ILE
211
n
211
ILE
211
L
VAL
212
n
212
VAL
212
L
LYS
213
n
213
LYS
213
L
SER
214
n
214
SER
214
L
PHE
215
n
215
PHE
215
L
ASN
216
n
216
ASN
216
L
ARG
217
n
217
ARG
217
L
ASN
218
n
218
ASN
218
L
GLU
219
n
219
GLU
219
L
CYS
220
n
220
CYS
220
L
GLU
1
n
1
GLU
1
H
VAL
2
n
2
VAL
2
H
ALA
3
n
3
ALA
3
H
LEU
4
n
4
LEU
4
H
GLN
5
n
5
GLN
5
H
GLN
6
n
6
GLN
6
H
SER
7
n
7
SER
7
H
GLY
8
n
8
GLY
8
H
ALA
9
n
9
ALA
9
H
GLU
10
n
10
GLU
10
H
LEU
11
n
11
LEU
11
H
VAL
12
n
12
VAL
12
H
LYS
13
n
13
LYS
13
H
PRO
14
n
14
PRO
14
H
GLY
15
n
15
GLY
15
H
ALA
16
n
16
ALA
16
H
SER
17
n
17
SER
17
H
VAL
18
n
18
VAL
18
H
LYS
19
n
19
LYS
19
H
LEU
20
n
20
LEU
20
H
SER
21
n
21
SER
21
H
CYS
22
n
22
CYS
22
H
ALA
23
n
23
ALA
23
H
ALA
24
n
24
ALA
24
H
SER
25
n
25
SER
25
H
GLY
26
n
26
GLY
26
H
PHE
27
n
27
PHE
27
H
THR
28
n
28
THR
28
H
ILE
29
n
29
ILE
29
H
LYS
30
n
30
LYS
30
H
ASP
31
n
31
ASP
31
H
ALA
32
n
32
ALA
32
H
TYR
33
n
33
TYR
33
H
MET
34
n
34
MET
34
H
HIS
35
n
35
HIS
35
H
TRP
36
n
36
TRP
36
H
VAL
37
n
37
VAL
37
H
LYS
38
n
38
LYS
38
H
GLN
39
n
39
GLN
39
H
LYS
40
n
40
LYS
40
H
PRO
41
n
41
PRO
41
H
GLU
42
n
42
GLU
42
H
GLN
43
n
43
GLN
43
H
GLY
44
n
44
GLY
44
H
LEU
45
n
45
LEU
45
H
GLU
46
n
46
GLU
46
H
TRP
47
n
47
TRP
47
H
ILE
48
n
48
ILE
48
H
GLY
49
n
49
GLY
49
H
ARG
50
n
50
ARG
50
H
ILE
51
n
51
ILE
51
H
ASP
52
n
52
ASP
52
H
SER
53
n
53
SER
53
H
GLY
54
n
54
GLY
54
H
SER
55
n
55
SER
55
H
SER
56
n
56
SER
56
H
ASN
57
n
57
ASN
57
H
THR
58
n
58
THR
58
H
ASN
59
n
59
ASN
59
H
TYR
60
n
60
TYR
60
H
ASP
61
n
61
ASP
61
H
PRO
62
n
62
PRO
62
H
THR
63
n
63
THR
63
H
PHE
64
n
64
PHE
64
H
LYS
65
n
65
LYS
65
H
GLY
66
n
66
GLY
66
H
LYS
67
n
67
LYS
67
H
ALA
68
n
68
ALA
68
H
THR
69
n
69
THR
69
H
ILE
70
n
70
ILE
70
H
THR
71
n
71
THR
71
H
ALA
72
n
72
ALA
72
H
ASP
73
n
73
ASP
73
H
ASP
74
n
74
ASP
74
H
SER
75
n
75
SER
75
H
SER
76
n
76
SER
76
H
ASN
77
n
77
ASN
77
H
THR
78
n
78
THR
78
H
ALA
79
n
79
ALA
79
H
TYR
80
n
80
TYR
80
H
LEU
81
n
81
LEU
81
H
GLN
82
n
82
GLN
82
H
MET
83
n
83
MET
83
H
SER
84
n
84
SER
84
H
SER
85
n
85
SER
85
H
LEU
86
n
86
LEU
86
H
THR
87
n
87
THR
87
H
SER
88
n
88
SER
88
H
GLU
89
n
89
GLU
89
H
ASP
90
n
90
ASP
90
H
THR
91
n
91
THR
91
H
ALA
92
n
92
ALA
92
H
VAL
93
n
93
VAL
93
H
TYR
94
n
94
TYR
94
H
TYR
95
n
95
TYR
95
H
CYS
96
n
96
CYS
96
H
ALA
97
n
97
ALA
97
H
ARG
98
n
98
ARG
98
H
VAL
99
n
99
VAL
99
H
n
100
100
H
n
101
101
H
n
102
102
H
n
103
103
H
n
104
104
H
TYR
105
n
105
TYR
105
H
ALA
106
n
106
ALA
106
H
MET
107
n
107
MET
107
H
ASP
108
n
108
ASP
108
H
TYR
109
n
109
TYR
109
H
TRP
110
n
110
TRP
110
H
GLY
111
n
111
GLY
111
H
GLN
112
n
112
GLN
112
H
GLY
113
n
113
GLY
113
H
THR
114
n
114
THR
114
H
SER
115
n
115
SER
115
H
VAL
116
n
116
VAL
116
H
THR
117
n
117
THR
117
H
VAL
118
n
118
VAL
118
H
SER
119
n
119
SER
119
H
SER
120
n
120
SER
120
H
ALA
121
n
121
ALA
121
H
LYS
122
n
122
LYS
122
H
THR
123
n
123
THR
123
H
THR
124
n
124
THR
124
H
PRO
125
n
125
PRO
125
H
PRO
126
n
126
PRO
126
H
SER
127
n
127
SER
127
H
VAL
128
n
128
VAL
128
H
TYR
129
n
129
TYR
129
H
PRO
130
n
130
PRO
130
H
LEU
131
n
131
LEU
131
H
ALA
132
n
132
ALA
132
H
PRO
133
n
133
PRO
133
H
GLY
134
n
134
GLY
134
H
SER
135
n
135
SER
135
H
ALA
136
n
136
ALA
136
H
ALA
137
n
137
ALA
137
H
GLN
138
n
138
GLN
138
H
THR
139
n
139
THR
139
H
ASN
140
n
140
ASN
140
H
SER
141
n
141
SER
141
H
MET
142
n
142
MET
142
H
VAL
143
n
143
VAL
143
H
THR
144
n
144
THR
144
H
LEU
145
n
145
LEU
145
H
GLY
146
n
146
GLY
146
H
CYS
147
n
147
CYS
147
H
LEU
148
n
148
LEU
148
H
VAL
149
n
149
VAL
149
H
LYS
150
n
150
LYS
150
H
GLY
151
n
151
GLY
151
H
TYR
152
n
152
TYR
152
H
PHE
153
n
153
PHE
153
H
PRO
154
n
154
PRO
154
H
GLU
155
n
155
GLU
155
H
PRO
156
n
156
PRO
156
H
VAL
157
n
157
VAL
157
H
THR
158
n
158
THR
158
H
VAL
159
n
159
VAL
159
H
THR
160
n
160
THR
160
H
TRP
161
n
161
TRP
161
H
ASN
162
n
162
ASN
162
H
SER
163
n
163
SER
163
H
GLY
164
n
164
GLY
164
H
SER
165
n
165
SER
165
H
LEU
166
n
166
LEU
166
H
SER
167
n
167
SER
167
H
SER
168
n
168
SER
168
H
GLY
169
n
169
GLY
169
H
VAL
170
n
170
VAL
170
H
HIS
171
n
171
HIS
171
H
THR
172
n
172
THR
172
H
PHE
173
n
173
PHE
173
H
PRO
174
n
174
PRO
174
H
ALA
175
n
175
ALA
175
H
VAL
176
n
176
VAL
176
H
LEU
177
n
177
LEU
177
H
GLN
178
n
178
GLN
178
H
SER
179
n
179
SER
179
H
ASP
180
n
180
ASP
180
H
LEU
181
n
181
LEU
181
H
TYR
182
n
182
TYR
182
H
THR
183
n
183
THR
183
H
LEU
184
n
184
LEU
184
H
SER
185
n
185
SER
185
H
SER
186
n
186
SER
186
H
SER
187
n
187
SER
187
H
VAL
188
n
188
VAL
188
H
SER
189
n
189
SER
189
H
VAL
190
n
190
VAL
190
H
PRO
191
n
191
PRO
191
H
THR
192
n
192
THR
192
H
SER
193
n
193
SER
193
H
THR
194
n
194
THR
194
H
GLU
195
n
195
GLU
195
H
THR
196
n
196
THR
196
H
VAL
197
n
197
VAL
197
H
THR
198
n
198
THR
198
H
CYS
199
n
199
CYS
199
H
ASN
200
n
200
ASN
200
H
VAL
201
n
201
VAL
201
H
ALA
202
n
202
ALA
202
H
HIS
203
n
203
HIS
203
H
ALA
204
n
204
ALA
204
H
PRO
205
n
205
PRO
205
H
SER
206
n
206
SER
206
H
SER
207
n
207
SER
207
H
THR
208
n
208
THR
208
H
LYS
209
n
209
LYS
209
H
VAL
210
n
210
VAL
210
H
ASP
211
n
211
ASP
211
H
LYS
212
n
212
LYS
212
H
LYS
213
n
213
LYS
213
H
ILE
214
n
214
ILE
214
H
VAL
215
n
215
VAL
215
H
PRO
216
n
216
PRO
216
H
ARG
217
n
217
ARG
217
H
author_and_software_defined_assembly
PISA
2
dimeric
3260
-20
20040
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
L
O
LEU
11
A
O
LEU
11
L
N
LYS
109
A
N
LYS
109
L
O
VAL
19
A
O
VAL
19
L
N
ILE
81
A
N
ILE
81
L
O
ASP
76
A
O
ASP
76
L
N
SER
73
A
N
SER
73
L
O
VAL
91
A
O
VAL
91
L
N
GLN
44
A
N
GLN
44
L
O
TRP
41
A
O
TRP
41
L
N
ILE
54
A
N
ILE
54
L
O
THR
120
A
O
THR
120
L
N
ASN
143
A
N
ASN
143
L
O
ALA
136
A
O
ALA
136
L
N
LEU
187
A
N
LEU
187
L
O
SER
182
A
O
SER
182
L
N
SER
168
A
N
SER
168
L
O
LYS
155
A
O
LYS
155
L
N
THR
199
A
N
THR
199
L
O
TYR
198
A
O
TYR
198
L
N
PHE
215
A
N
PHE
215
H
O
ALA
3
B
O
ALA
3
H
N
SER
25
B
N
SER
25
H
O
VAL
18
B
O
VAL
18
H
N
MET
83
B
N
MET
83
H
O
TYR
80
B
O
TYR
80
H
N
THR
71
B
N
THR
71
H
O
GLY
8
B
O
GLY
8
H
N
SER
115
B
N
SER
115
H
O
THR
114
B
O
THR
114
H
N
TYR
94
B
N
TYR
94
H
O
VAL
93
B
O
VAL
93
H
N
GLN
39
B
N
GLN
39
H
O
MET
34
B
O
MET
34
H
N
ILE
51
B
N
ILE
51
H
O
ARG
50
B
O
ARG
50
H
N
ASN
59
B
N
ASN
59
H
O
SER
127
B
O
SER
127
H
N
LYS
150
B
N
LYS
150
H
O
LEU
145
B
O
LEU
145
H
N
VAL
188
B
N
VAL
188
H
O
SER
187
B
O
SER
187
H
N
HIS
171
B
N
HIS
171
H
O
THR
158
B
O
THR
158
H
N
ALA
202
B
N
ALA
202
H
O
CYS
199
B
O
CYS
199
H
N
LYS
212
B
N
LYS
212
1
L
CG
GLU
17
A
CG
GLU
17
1
Y
1
L
CD
GLU
17
A
CD
GLU
17
1
Y
1
L
OE1
GLU
17
A
OE1
GLU
17
1
Y
1
L
OE2
GLU
17
A
OE2
GLU
17
1
Y
1
L
CG
ARG
114
A
CG
ARG
114
1
Y
1
L
CD
ARG
114
A
CD
ARG
114
1
Y
1
L
NE
ARG
114
A
NE
ARG
114
1
Y
1
L
CZ
ARG
114
A
CZ
ARG
114
1
Y
1
L
NH1
ARG
114
A
NH1
ARG
114
1
Y
1
L
NH2
ARG
114
A
NH2
ARG
114
1
Y
1
H
CG
LYS
13
B
CG
LYS
13
1
Y
1
H
CD
LYS
13
B
CD
LYS
13
1
Y
1
H
CE
LYS
13
B
CE
LYS
13
1
Y
1
H
NZ
LYS
13
B
NZ
LYS
13
1
Y
1
H
CG
TYR
105
B
CG
TYR
105
1
Y
1
H
CD1
TYR
105
B
CD1
TYR
105
1
Y
1
H
CD2
TYR
105
B
CD2
TYR
105
1
Y
1
H
CE1
TYR
105
B
CE1
TYR
105
1
Y
1
H
CE2
TYR
105
B
CE2
TYR
105
1
Y
1
H
CZ
TYR
105
B
CZ
TYR
105
1
Y
1
H
OH
TYR
105
B
OH
TYR
105
1
Y
1
H
OG1
THR
139
B
OG1
THR
139
1
Y
1
H
CG2
THR
139
B
CG2
THR
139
1
Y
1
H
CG
ASN
140
B
CG
ASN
140
1
Y
1
H
OD1
ASN
140
B
OD1
ASN
140
1
Y
1
H
ND2
ASN
140
B
ND2
ASN
140
1
Y
1
H
OG1
THR
194
B
OG1
THR
194
1
Y
1
H
CG2
THR
194
B
CG2
THR
194
1
Y
1
H
GLY
100
B
GLY
100
1
Y
1
H
LEU
101
B
LEU
101
1
Y
1
H
SER
102
B
SER
102
1
Y
1
H
TYR
103
B
TYR
103
1
Y
1
H
TRP
104
B
TRP
104
1
Y
1
L
TYR
38
0.063
SIDE CHAIN
1
-17.01
2.70
111.00
93.99
H
H
H
N
CA
C
GLN
GLN
GLN
138
138
138
N
1
12.49
1.50
119.30
131.79
H
H
H
C
N
CA
PHE
PRO
PRO
173
174
174
Y
1
L
SER
32
-39.00
-19.50
1
L
PRO
46
-45.95
94.38
1
L
ALA
57
79.36
-38.10
1
L
SER
58
-147.06
21.38
1
L
SER
62
-53.08
87.13
1
L
ARG
114
-105.53
-152.94
1
L
ASP
116
-32.17
136.55
1
L
PRO
126
-46.72
152.18
1
L
SER
133
-76.25
36.93
1
L
ASN
144
53.80
82.74
1
L
ILE
150
175.41
141.29
1
L
LYS
155
-179.69
124.60
1
L
ASP
157
36.43
54.41
1
L
GLN
162
-88.71
36.29
1
L
ASN
196
-119.73
-81.63
1
L
LYS
213
-151.08
72.95
1
L
ARG
217
-27.08
-43.45
1
H
VAL
2
-58.46
102.87
1
H
GLN
6
-101.51
-134.64
1
H
CYS
22
-154.57
80.79
1
H
ALA
32
-127.67
-150.97
1
H
GLU
42
56.31
11.06
1
H
GLN
43
-113.14
-163.22
1
H
ILE
48
-101.36
-64.55
1
H
SER
56
63.34
-4.28
1
H
THR
58
-165.40
90.79
1
H
THR
63
-75.67
24.41
1
H
PHE
64
-153.02
-21.50
1
H
LYS
65
-14.32
-69.45
1
H
THR
71
-122.90
-164.07
1
H
ALA
72
-179.64
104.60
1
H
SER
75
-98.04
34.29
1
H
SER
76
-158.01
-1.34
1
H
ASN
77
48.77
23.40
1
H
SER
85
33.93
80.22
1
H
GLU
89
-43.36
-17.91
1
H
ALA
92
177.42
-176.03
1
H
ARG
98
-155.13
74.12
1
H
TYR
109
165.85
95.94
1
H
PRO
133
-106.34
-89.06
1
H
ALA
137
-70.71
-79.91
1
H
GLN
138
-171.70
75.42
1
H
THR
139
66.65
-19.30
1
H
SER
167
-159.90
-55.51
1
H
THR
172
-161.38
101.96
1
H
SER
179
52.22
82.95
1
H
SER
193
-129.43
-121.30
1
H
THR
194
-176.20
-31.15
1
H
THR
196
2.16
123.80
1
H
PRO
205
-46.07
-81.08
1
H
SER
206
-59.53
-5.05
PARHCSDX.PRO
TOPHCSDX.PRO
PARAM.H2O
TOPOL.H2O
14.6
0.195
0.195
2.80
7.00
8184
86.6
1
GROUP
2.0
MOLECULAR REPLACEMENT
PDB ENTRY 1BBD
0.28
5.0
2.80
7.00
10
3264
0
0
3254
0.015
2.1
28.2
1.95
0.255
2.96
389
6
2.8
1A5F
10993
1.0
0.068
1
4.6
2.1
86.50
data collection
XENGEN
data reduction
SCALEK
(XENGEN)
model building
X-PLOR
3.1
refinement
X-PLOR
3.1
data reduction
XENGEN
data scaling
SCALEK
(XENGEN)
phasing
X-PLOR
3.1
FAB FRAGMENT OF A MONOCLONAL ANTI-E-SELECTIN ANTIBODY
1
N
N
2
N
N
3
N
N
3
N
N
L
SER
128
A
SER
128
HELX_P
L
THR
132
A
THR
132
1
1
5
L
LYS
189
A
LYS
189
HELX_P
L
GLU
193
A
GLU
193
1
2
5
H
ILE
29
B
ILE
29
HELX_P
H
ASP
31
B
ASP
31
5
3
3
H
SER
88
B
SER
88
HELX_P
H
ASP
90
B
ASP
90
5
4
3
disulf
2.021
L
CYS
23
A
SG
CYS
23
1_555
L
CYS
94
A
SG
CYS
94
1_555
disulf
2.031
L
CYS
140
A
SG
CYS
140
1_555
L
CYS
200
A
SG
CYS
200
1_555
disulf
2.030
H
CYS
22
B
SG
CYS
22
1_555
H
CYS
96
B
SG
CYS
96
1_555
disulf
2.020
H
CYS
147
B
SG
CYS
147
1_555
H
CYS
199
B
SG
CYS
199
1_555
IMMUNOGLOBULIN
IMMUNOGLOBULIN, FAB, ANTIBODY, ANTI-E-SELECTIN
L
SER
7
A
SER
7
1
L
PRO
8
A
PRO
8
0.01
L
TYR
100
A
TYR
100
1
L
PRO
101
A
PRO
101
-0.40
L
TYR
146
A
TYR
146
1
L
PRO
147
A
PRO
147
-0.14
H
PHE
153
B
PHE
153
1
H
PRO
154
B
PRO
154
-0.23
H
GLU
155
B
GLU
155
1
H
PRO
156
B
PRO
156
-0.66
AAA72671
GB
1
1
208622
MDIVMTQSPSSLSVSAGERVTMSCKSSQSLLNSGNQKNFLAWYQQKPGQPPKLLIYGASTRESGVPDRFTGSGSGTDFTL
TISSVQAEDLAVYYCQNDHSYPLTFGAGTKLELKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGS
ERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNEC
1A5F
PDB
2
1A5F
2
221
1A5F
1
220
208622
L
1
1
220
1
217
1A5F
1
217
1A5F
H
2
1
217
1
SER
conflict
THR
12
1A5F
L
208622
GB
13
12
1
SER
conflict
THR
14
1A5F
L
208622
GB
15
14
1
ALA
conflict
THR
15
1A5F
L
208622
GB
16
15
1
ARG
conflict
LYS
18
1A5F
L
208622
GB
19
18
1
SER
conflict
THR
22
1A5F
L
208622
GB
23
22
1
ASN
conflict
ALA
34
1A5F
L
208622
GB
35
34
1
PHE
conflict
TYR
38
1A5F
L
208622
GB
39
38
1
ALA
conflict
THR
40
1A5F
L
208622
GB
41
40
1
PRO
conflict
SER
49
1A5F
L
208622
GB
50
49
1
GLY
conflict
TRP
56
1A5F
L
208622
GB
57
56
1
THR
conflict
SER
80
1A5F
L
208622
GB
81
80
1
SER
conflict
GLY
83
1A5F
L
208622
GB
84
83
1
ASP
conflict
ASN
97
1A5F
L
208622
GB
98
97
1
HIS
conflict
TYR
98
1A5F
L
208622
GB
99
98
1
SER
conflict
ASN
99
1A5F
L
208622
GB
100
99
2
3
3
4
3
4
6
4
3
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
L
SER
10
A
SER
10
L
VAL
13
A
VAL
13
L
LYS
109
A
LYS
109
L
LEU
112
A
LEU
112
L
LYS
18
A
LYS
18
L
LYS
24
A
LYS
24
L
ASP
76
A
ASP
76
L
SER
82
A
SER
82
L
PHE
68
A
PHE
68
L
SER
73
A
SER
73
L
VAL
91
A
VAL
91
L
ASN
96
A
ASN
96
L
LEU
39
A
LEU
39
L
GLN
44
A
GLN
44
L
LYS
51
A
LYS
51
L
ILE
54
A
ILE
54
L
THR
120
A
THR
120
L
PHE
124
A
PHE
124
L
GLY
135
A
GLY
135
L
ASN
143
A
ASN
143
L
MET
181
A
MET
181
L
THR
188
A
THR
188
L
VAL
165
A
VAL
165
L
TRP
169
A
TRP
169
L
TRP
154
A
TRP
154
L
ILE
156
A
ILE
156
L
SER
197
A
SER
197
L
ALA
202
A
ALA
202
L
ILE
211
A
ILE
211
L
ASN
216
A
ASN
216
H
ALA
3
B
ALA
3
H
GLN
5
B
GLN
5
H
VAL
18
B
VAL
18
H
SER
25
B
SER
25
H
THR
78
B
THR
78
H
MET
83
B
MET
83
H
ALA
68
B
ALA
68
H
THR
71
B
THR
71
H
GLY
8
B
GLY
8
H
VAL
12
B
VAL
12
H
THR
114
B
THR
114
H
VAL
118
B
VAL
118
H
ALA
92
B
ALA
92
H
ALA
97
B
ALA
97
H
MET
34
B
MET
34
H
GLN
39
B
GLN
39
H
LEU
45
B
LEU
45
H
ILE
51
B
ILE
51
H
THR
58
B
THR
58
H
TYR
60
B
TYR
60
H
SER
127
B
SER
127
H
LEU
131
B
LEU
131
H
THR
144
B
THR
144
H
LYS
150
B
LYS
150
H
THR
183
B
THR
183
H
SER
189
B
SER
189
H
VAL
170
B
VAL
170
H
THR
172
B
THR
172
H
THR
158
B
THR
158
H
TRP
161
B
TRP
161
H
THR
198
B
THR
198
H
HIS
203
B
HIS
203
H
THR
208
B
THR
208
H
LYS
213
B
LYS
213
19
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