0.038536
0.000000
0.006345
0.000000
0.017854
0.000000
0.000000
0.000000
0.023613
0.00000
0.00000
0.00000
Allison, T.J.
Wood, T.C.
Briercheck, D.M.
Rastinejad, F.
Richardson, J.P.
Rule, G.S.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
2
90.00
99.35
90.00
25.950
56.010
42.920
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C5 H11 N O2 Se
196.106
n
SELENOMETHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
US
Nat.Struct.Biol.
NSBIEW
2024
1072-8368
5
352
356
10.1038/nsb0598-352
9586995
Crystal structure of the RNA-binding domain from transcription termination factor rho.
1998
US
Nat.Struct.Biol.
NSBIEW
2024
1072-8368
5
393
The NMR Structure of the RNA Binding Domain of E. Coli Rho Factor Suggests Possible RNA-Protein Interactions
1998
NE
J.Biomol.NMR
JBNME9
0800
0925-2738
8
429
1H, 15N and 13C Resonance Assignments and Secondary Structure Determination of the RNA-Binding Domain of E.Coli Rho Protein
1996
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
MIRROR
IMAGE PLATE
1997-05
FUJI
SI(111)
M
x-ray
1
0.969
1.0
0.978
1.0
0.979
1.0
0.984
1.0
X4A
NSLS
0.969, 0.978, 0.979, 0.984
SYNCHROTRON
NSLS BEAMLINE X4A
14775.287
RHO
RNA BINDING DOMAIN, RESIDUES 1 - 130
1
man
polymer
18.015
water
115
nat
water
no
yes
(MSE)NLTELKNTPVSELITLGEN(MSE)GLENLAR(MSE)RKQDIIFAILKQHAKSGEDIFGDGVLEILQDGFGFLRSA
DSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVNFDKPENARNK
MNLTELKNTPVSELITLGENMGLENLARMRKQDIIFAILKQHAKSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIY
VSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVNFDKPENARNK
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Escherichia
Escherichia coli
BL21 (DE3)
Escherichia
Escherichia coli
sample
BL21
469008
Escherichia coli BL21(DE3)
RHO
469008
Escherichia coli BL21(DE3)
BL21 (DE3)
T7
PLASMID
PET11A
4
2.08
33.
7.0
pH 7.0
repository
Initial release
Version format compliance
Version format compliance
1
0
1998-06-17
1
1
2008-03-24
1
2
2011-07-13
Y
1998-03-05
REL
HOH
water
HOH
1001
2
HOH
HOH
1001
A
HOH
1002
2
HOH
HOH
1002
A
HOH
1003
2
HOH
HOH
1003
A
HOH
1004
2
HOH
HOH
1004
A
HOH
1005
2
HOH
HOH
1005
A
HOH
1006
2
HOH
HOH
1006
A
HOH
1007
2
HOH
HOH
1007
A
HOH
1008
2
HOH
HOH
1008
A
HOH
1009
2
HOH
HOH
1009
A
HOH
1011
2
HOH
HOH
1011
A
HOH
1012
2
HOH
HOH
1012
A
HOH
1013
2
HOH
HOH
1013
A
HOH
1014
2
HOH
HOH
1014
A
HOH
1015
2
HOH
HOH
1015
A
HOH
1016
2
HOH
HOH
1016
A
HOH
1017
2
HOH
HOH
1017
A
HOH
1018
2
HOH
HOH
1018
A
HOH
1019
2
HOH
HOH
1019
A
HOH
1020
2
HOH
HOH
1020
A
HOH
1021
2
HOH
HOH
1021
A
HOH
1022
2
HOH
HOH
1022
A
HOH
1023
2
HOH
HOH
1023
A
HOH
1024
2
HOH
HOH
1024
A
HOH
1025
2
HOH
HOH
1025
A
HOH
1026
2
HOH
HOH
1026
A
HOH
1030
2
HOH
HOH
1030
A
HOH
1032
2
HOH
HOH
1032
A
HOH
1035
2
HOH
HOH
1035
A
HOH
1036
2
HOH
HOH
1036
A
HOH
1037
2
HOH
HOH
1037
A
HOH
1039
2
HOH
HOH
1039
A
HOH
1042
2
HOH
HOH
1042
A
HOH
1043
2
HOH
HOH
1043
A
HOH
1048
2
HOH
HOH
1048
A
HOH
1049
2
HOH
HOH
1049
A
HOH
1050
2
HOH
HOH
1050
A
HOH
1052
2
HOH
HOH
1052
A
HOH
1053
2
HOH
HOH
1053
A
HOH
1054
2
HOH
HOH
1054
A
HOH
1061
2
HOH
HOH
1061
A
HOH
1064
2
HOH
HOH
1064
A
HOH
1075
2
HOH
HOH
1075
A
HOH
1077
2
HOH
HOH
1077
A
HOH
1079
2
HOH
HOH
1079
A
HOH
1089
2
HOH
HOH
1089
A
HOH
1107
2
HOH
HOH
1107
A
HOH
1120
2
HOH
HOH
1120
A
HOH
1133
2
HOH
HOH
1133
A
HOH
1134
2
HOH
HOH
1134
A
HOH
1150
2
HOH
HOH
1150
A
HOH
1152
2
HOH
HOH
1152
A
HOH
2006
2
HOH
HOH
2006
A
HOH
2008
2
HOH
HOH
2008
A
HOH
2018
2
HOH
HOH
2018
A
HOH
2029
2
HOH
HOH
2029
A
HOH
2045
2
HOH
HOH
2045
A
HOH
2059
2
HOH
HOH
2059
A
HOH
2074
2
HOH
HOH
2074
A
HOH
2096
2
HOH
HOH
2096
A
HOH
2207
2
HOH
HOH
2207
A
HOH
3002
2
HOH
HOH
3002
A
HOH
3004
2
HOH
HOH
3004
A
HOH
3006
2
HOH
HOH
3006
A
HOH
3008
2
HOH
HOH
3008
A
HOH
3011
2
HOH
HOH
3011
A
HOH
3012
2
HOH
HOH
3012
A
HOH
3013
2
HOH
HOH
3013
A
HOH
3016
2
HOH
HOH
3016
A
HOH
3022
2
HOH
HOH
3022
A
HOH
3037
2
HOH
HOH
3037
A
HOH
3044
2
HOH
HOH
3044
A
HOH
3053
2
HOH
HOH
3053
A
HOH
3177
2
HOH
HOH
3177
A
HOH
3203
2
HOH
HOH
3203
A
HOH
4001
2
HOH
HOH
4001
A
HOH
4015
2
HOH
HOH
4015
A
HOH
4023
2
HOH
HOH
4023
A
HOH
4025
2
HOH
HOH
4025
A
HOH
4034
2
HOH
HOH
4034
A
HOH
4035
2
HOH
HOH
4035
A
HOH
4038
2
HOH
HOH
4038
A
HOH
4039
2
HOH
HOH
4039
A
HOH
4040
2
HOH
HOH
4040
A
HOH
4047
2
HOH
HOH
4047
A
HOH
4055
2
HOH
HOH
4055
A
HOH
4061
2
HOH
HOH
4061
A
HOH
4066
2
HOH
HOH
4066
A
HOH
4072
2
HOH
HOH
4072
A
HOH
4079
2
HOH
HOH
4079
A
HOH
4102
2
HOH
HOH
4102
A
HOH
4111
2
HOH
HOH
4111
A
HOH
4119
2
HOH
HOH
4119
A
HOH
4124
2
HOH
HOH
4124
A
HOH
4191
2
HOH
HOH
4191
A
HOH
5002
2
HOH
HOH
5002
A
HOH
5007
2
HOH
HOH
5007
A
HOH
5009
2
HOH
HOH
5009
A
HOH
5010
2
HOH
HOH
5010
A
HOH
5012
2
HOH
HOH
5012
A
HOH
5013
2
HOH
HOH
5013
A
HOH
5015
2
HOH
HOH
5015
A
HOH
5018
2
HOH
HOH
5018
A
HOH
5020
2
HOH
HOH
5020
A
HOH
5024
2
HOH
HOH
5024
A
HOH
5029
2
HOH
HOH
5029
A
HOH
5033
2
HOH
HOH
5033
A
HOH
5034
2
HOH
HOH
5034
A
HOH
5038
2
HOH
HOH
5038
A
HOH
5044
2
HOH
HOH
5044
A
HOH
5058
2
HOH
HOH
5058
A
HOH
5061
2
HOH
HOH
5061
A
HOH
5063
2
HOH
HOH
5063
A
HOH
5084
2
HOH
HOH
5084
A
HOH
5093
2
HOH
HOH
5093
A
HOH
5094
2
HOH
HOH
5094
A
MSE
1
n
1
MSE
1
A
ASN
2
n
2
ASN
2
A
LEU
3
n
3
LEU
3
A
THR
4
n
4
THR
4
A
GLU
5
n
5
GLU
5
A
LEU
6
n
6
LEU
6
A
LYS
7
n
7
LYS
7
A
ASN
8
n
8
ASN
8
A
THR
9
n
9
THR
9
A
PRO
10
n
10
PRO
10
A
VAL
11
n
11
VAL
11
A
SER
12
n
12
SER
12
A
GLU
13
n
13
GLU
13
A
LEU
14
n
14
LEU
14
A
ILE
15
n
15
ILE
15
A
THR
16
n
16
THR
16
A
LEU
17
n
17
LEU
17
A
GLY
18
n
18
GLY
18
A
GLU
19
n
19
GLU
19
A
ASN
20
n
20
ASN
20
A
MSE
21
n
21
MSE
21
A
GLY
22
n
22
GLY
22
A
LEU
23
n
23
LEU
23
A
GLU
24
n
24
GLU
24
A
ASN
25
n
25
ASN
25
A
LEU
26
n
26
LEU
26
A
ALA
27
n
27
ALA
27
A
ARG
28
n
28
ARG
28
A
MSE
29
n
29
MSE
29
A
ARG
30
n
30
ARG
30
A
LYS
31
n
31
LYS
31
A
GLN
32
n
32
GLN
32
A
ASP
33
n
33
ASP
33
A
ILE
34
n
34
ILE
34
A
ILE
35
n
35
ILE
35
A
PHE
36
n
36
PHE
36
A
ALA
37
n
37
ALA
37
A
ILE
38
n
38
ILE
38
A
LEU
39
n
39
LEU
39
A
LYS
40
n
40
LYS
40
A
GLN
41
n
41
GLN
41
A
HIS
42
n
42
HIS
42
A
ALA
43
n
43
ALA
43
A
LYS
44
n
44
LYS
44
A
SER
45
n
45
SER
45
A
GLY
46
n
46
GLY
46
A
GLU
47
n
47
GLU
47
A
ASP
48
n
48
ASP
48
A
ILE
49
n
49
ILE
49
A
PHE
50
n
50
PHE
50
A
GLY
51
n
51
GLY
51
A
ASP
52
n
52
ASP
52
A
GLY
53
n
53
GLY
53
A
VAL
54
n
54
VAL
54
A
LEU
55
n
55
LEU
55
A
GLU
56
n
56
GLU
56
A
ILE
57
n
57
ILE
57
A
LEU
58
n
58
LEU
58
A
GLN
59
n
59
GLN
59
A
ASP
60
n
60
ASP
60
A
GLY
61
n
61
GLY
61
A
PHE
62
n
62
PHE
62
A
GLY
63
n
63
GLY
63
A
PHE
64
n
64
PHE
64
A
LEU
65
n
65
LEU
65
A
ARG
66
n
66
ARG
66
A
SER
67
n
67
SER
67
A
ALA
68
n
68
ALA
68
A
ASP
69
n
69
ASP
69
A
SER
70
n
70
SER
70
A
SER
71
n
71
SER
71
A
TYR
72
n
72
TYR
72
A
LEU
73
n
73
LEU
73
A
ALA
74
n
74
ALA
74
A
GLY
75
n
75
GLY
75
A
PRO
76
n
76
PRO
76
A
ASP
77
n
77
ASP
77
A
ASP
78
n
78
ASP
78
A
ILE
79
n
79
ILE
79
A
TYR
80
n
80
TYR
80
A
VAL
81
n
81
VAL
81
A
SER
82
n
82
SER
82
A
PRO
83
n
83
PRO
83
A
SER
84
n
84
SER
84
A
GLN
85
n
85
GLN
85
A
ILE
86
n
86
ILE
86
A
ARG
87
n
87
ARG
87
A
ARG
88
n
88
ARG
88
A
PHE
89
n
89
PHE
89
A
ASN
90
n
90
ASN
90
A
LEU
91
n
91
LEU
91
A
ARG
92
n
92
ARG
92
A
THR
93
n
93
THR
93
A
GLY
94
n
94
GLY
94
A
ASP
95
n
95
ASP
95
A
THR
96
n
96
THR
96
A
ILE
97
n
97
ILE
97
A
SER
98
n
98
SER
98
A
GLY
99
n
99
GLY
99
A
LYS
100
n
100
LYS
100
A
ILE
101
n
101
ILE
101
A
ARG
102
n
102
ARG
102
A
PRO
103
n
103
PRO
103
A
PRO
104
n
104
PRO
104
A
LYS
105
n
105
LYS
105
A
GLU
106
n
106
GLU
106
A
GLY
107
n
107
GLY
107
A
GLU
108
n
108
GLU
108
A
ARG
109
n
109
ARG
109
A
TYR
110
n
110
TYR
110
A
PHE
111
n
111
PHE
111
A
ALA
112
n
112
ALA
112
A
LEU
113
n
113
LEU
113
A
LEU
114
n
114
LEU
114
A
LYS
115
n
115
LYS
115
A
VAL
116
n
116
VAL
116
A
ASN
117
n
117
ASN
117
A
GLU
118
n
118
GLU
118
A
VAL
119
n
119
VAL
119
A
ASN
120
n
120
ASN
120
A
PHE
121
n
121
PHE
121
A
ASP
122
n
122
ASP
122
A
LYS
123
n
123
LYS
123
A
PRO
124
n
124
PRO
124
A
GLU
125
n
125
GLU
125
A
n
126
126
A
n
127
127
A
n
128
128
A
n
129
129
A
n
130
130
A
author_defined_assembly
1
monomeric
A
MSE
1
SELENOMETHIONINE
A
MSE
1
MET
A
MSE
21
SELENOMETHIONINE
A
MSE
21
MET
A
MSE
29
SELENOMETHIONINE
A
MSE
29
MET
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
O
ILE
79
A
O
ILE
79
A
N
LEU
65
A
N
LEU
65
A
O
PHE
64
A
O
PHE
64
A
N
GLU
56
A
N
GLU
56
A
O
ILE
49
A
O
ILE
49
A
N
ILE
101
A
N
ILE
101
A
O
SER
98
A
O
SER
98
A
N
GLU
118
A
N
GLU
118
1
A
ASN
126
A
ASN
126
1
Y
1
A
ALA
127
A
ALA
127
1
Y
1
A
ARG
128
A
ARG
128
1
Y
1
A
ASN
129
A
ASN
129
1
Y
1
A
LYS
130
A
LYS
130
1
Y
1
A
A
CG
SE
MSE
MSE
21
21
-0.252
0.034
1.950
1.698
N
1
A
TYR
72
84.52
17.83
1
A
PHE
121
59.77
15.30
1
A
PRO
124
-54.43
14.21
PARAM19X.PRO
TOPH19X.PRO
21.1
0.2500000
0.2160000
0.2160000
1.55
30.
1636
16360
10.
92.
RANDOM
1
RESTRAINED
THROUGHOUT
0.01
MAD
1.55
30.
115
1103
0
0
988
0.011
1.32
1.55
30.
1A62
16360
0.01
0.0680000
0.0400000
1
22.
6.0
92.
0.2700000
1.55
1.61
5.2
0.2600000
5.
67.
model building
X-PLOR
refinement
X-PLOR
data reduction
DENZO
data scaling
SCALEPACK
phasing
X-PLOR
RHO
CRYSTAL STRUCTURE OF THE RNA-BINDING DOMAIN OF THE TRANSCRIPTIONAL TERMINATOR PROTEIN RHO
1
N
N
2
N
N
A
LEU
3
A
LEU
3
HELX_P
A
LYS
7
A
LYS
7
1
1
5
A
VAL
11
A
VAL
11
HELX_P
A
MSE
21
A
MSE
21
1
2
11
A
LYS
31
A
LYS
31
HELX_P
A
SER
45
A
SER
45
1
3
15
A
ALA
68
A
ALA
68
HELX_P
A
SER
70
A
SER
70
5
4
3
A
PRO
83
A
PRO
83
HELX_P
A
ARG
88
A
ARG
88
1
5
6
covale
1.332
A
MSE
1
A
C
MSE
1
1_555
A
ASN
2
A
N
ASN
2
1_555
covale
1.338
A
MSE
21
A
N
MSE
21
1_555
A
ASN
20
A
C
ASN
20
1_555
covale
1.336
A
MSE
21
A
C
MSE
21
1_555
A
GLY
22
A
N
GLY
22
1_555
covale
1.327
A
MSE
29
A
N
MSE
29
1_555
A
ARG
28
A
C
ARG
28
1_555
covale
1.328
A
MSE
29
A
C
MSE
29
1_555
A
ARG
30
A
N
ARG
30
1_555
TRANSCRIPTION TERMINATION
TRANSCRIPTION TERMINATION, TERMINATION, RNA BINDING DOMAIN, TRANSCRIPTION REGULATION, OB FOLD, F1-ATPASE
RHO_ECOLI
UNP
1
1
P03002
MNLTELKNTPVSELITLGENMGLENLARMRKQDIIFAILKQHAKSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIY
VSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVNFDKPENARNKILFENLTPLHANSRLRMERGNGSTEDLTAR
VLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVVASTFDEPASRHV
QVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATAL
IDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGTRKEELLTTQEELQKMWILRKIIHPMGEIDAMEFLI
NKLAMTKTNDDFFEMMKRS
2
130
1A62
2
130
P03002
A
1
2
130
1
MET
MODIFIED RESIDUE
MSE
21
1A62
A
P03002
UNP
21
21
1
MET
MODIFIED RESIDUE
MSE
29
1A62
A
P03002
UNP
29
29
5
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
ILE
79
A
ILE
79
A
VAL
81
A
VAL
81
A
GLY
63
A
GLY
63
A
ARG
66
A
ARG
66
A
ILE
49
A
ILE
49
A
ILE
57
A
ILE
57
A
THR
96
A
THR
96
A
ILE
101
A
ILE
101
A
LYS
115
A
LYS
115
A
VAL
119
A
VAL
119
4
P 1 21 1