0.025860
-0.001999
-0.003889
0.000000
0.021952
-0.005610
0.000000
0.000000
0.021816
0.00000
0.00000
0.00000
Zhao, Q.
Khorasanizadeh, S.
Rastinejad, F.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
2
75.16
80.64
85.58
38.670
45.690
47.950
C9 H12 I N2 O8 P
434.078
n
5-IODO-2'-DEOXYURIDINE-5'-MONOPHOSPHATE
DNA linking
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C10 H14 N5 O6 P
331.222
y
2'-DEOXYADENOSINE-5'-MONOPHOSPHATE
DNA linking
C9 H14 N3 O7 P
307.197
y
2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE
DNA linking
C10 H14 N5 O7 P
347.221
y
2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE
DNA linking
C10 H15 N2 O8 P
322.208
y
THYMIDINE-5'-MONOPHOSPHATE
DNA linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
Zn 2
65.409
ZINC ION
non-polymer
US
Mol.Cell
MOCEFL
2168
1097-2765
1
849
861
10.1016/S1097-2765(00)80084-2
9660968
Structural elements of an orphan nuclear receptor-DNA complex.
1998
10.2210/pdb1a6y/pdb
pdb_00001a6y
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
NONE
IMAGE PLATE
1996-12-15
MARRESEARCH
NI FILTER
SINGLE WAVELENGTH
M
x-ray
1
1.0
X11
EMBL/DESY, HAMBURG
SYNCHROTRON
EMBL/DESY, HAMBURG BEAMLINE X11
6254.863
DNA (5'-D(*CP*AP*AP*CP*TP*AP*GP*GP*TP*CP*AP*CP*(5IT)P*AP*GP*GP*TP*CP*AP*G)-3')
1
syn
polymer
6124.965
DNA (5'-D(*CP*TP*GP*AP*CP*CP*TP*AP*GP*TP*GP*AP*CP*CP*TP*AP*GP*TP*TP*G)-3')
1
syn
polymer
10902.009
ORPHAN NUCLEAR RECEPTOR NR1D1
DNA BINDING DOMAIN CONSISTS OF RESIDUES A 101 TO A 164, B 101 TO B 164
H116L
2
man
polymer
65.409
ZINC ION
4
syn
non-polymer
18.015
water
234
nat
water
THYROID HORMONE RECEPTOR-RELATED PROTEIN REV-ERBA-ALPHA, REVERB, REVERBA ORPHAN NUCLEAR RECEPTOR, V-ERBA RELATED PROTEIN EAR-1
no
yes
(DC)(DA)(DA)(DC)(DT)(DA)(DG)(DG)(DT)(DC)(DA)(DC)(5IU)(DA)(DG)(DG)(DT)(DC)(DA)
(DG)
CAACTAGGTCACUAGGTCAG
C
polydeoxyribonucleotide
no
no
(DC)(DT)(DG)(DA)(DC)(DC)(DT)(DA)(DG)(DT)(DG)(DA)(DC)(DC)(DT)(DA)(DG)(DT)(DT)(DG)
CTGACCTAGTGACCTAGTTG
D
polydeoxyribonucleotide
no
no
TKLNGMVLLCKVCGDVASGFHYGVLACEGCKGFFRRSIQQNIQYKRCLKNENCSIVRINRNRCQQCRFKKCLSVGMSRDA
VRFGRIPKREKQRM
TKLNGMVLLCKVCGDVASGFHYGVLACEGCKGFFRRSIQQNIQYKRCLKNENCSIVRINRNRCQQCRFKKCLSVGMSRDA
VRFGRIPKREKQRM
A,B
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
human
Homo
Escherichia
Escherichia coli
sample
9606
Homo sapiens
511693
Escherichia coli BL21
BL21
PGEX
1
2.58
53.4
VAPOR DIFFUSION, HANGING DROP
7.5
PROTEIN AND DNA COMPLEX WAS CRYSTALLIZED FROM 25-30% PEG 8000, 5 MM MGCL2, 400 MM NACL2, 100 MM TRIS, PH 7.5., VAPOR DIFFUSION, HANGING DROP
NACL
1
MGCL2
1
TRIS
1
PEG 8000
1
PEG 8000
2
10.082
1
19
C
600
D
640
-5.294
C_DC600:DG640_D
1
-8.866
0.098
-0.696
-0.285
11.415
1
20
C
601
D
639
-3.096
C_DA601:DT639_D
2
-21.955
0.342
0.061
-0.280
-6.683
1
20
C
602
D
638
-7.798
C_DA602:DT638_D
3
-19.344
0.044
-0.019
-0.320
2.543
1
19
C
603
D
637
1.742
C_DC603:DG637_D
4
-11.514
-0.010
0.093
-0.327
-4.807
1
20
C
604
D
636
0.033
C_DT604:DA636_D
5
-14.273
0.770
0.378
-0.090
-3.743
C
605
D
635
7.113
C_DA605:DT635_D
6
-9.908
-0.301
-0.013
0.451
4.978
1
19
C
606
D
634
2.971
C_DG606:DC634_D
7
-8.116
0.341
-0.495
-0.179
-6.287
1
C
607
D
633
8.904
C_DG607:DC633_D
8
-16.637
-0.286
-0.296
0.318
-1.984
1
20
C
608
D
632
3.450
C_DT608:DA632_D
9
-17.335
-0.071
0.016
0.200
1.608
1
19
C
609
D
631
-2.193
C_DC609:DG631_D
10
0.951
0.204
-0.599
-0.114
13.434
1
20
C
610
D
630
2.491
C_DA610:DT630_D
11
-20.089
0.578
0.545
0.005
8.147
1
19
C
611
D
629
1.740
C_DC611:DG629_D
12
-9.663
0.008
-0.227
-0.551
-1.194
1
20
C
612
D
628
-3.748
C_5IU612:DA628_D
13
-8.382
0.757
0.140
-0.054
3.475
1
20
C
613
D
627
-5.805
C_DA613:DT627_D
14
-11.189
0.014
0.473
-0.066
6.749
1
19
C
614
D
626
7.086
C_DG614:DC626_D
15
-6.844
0.164
-0.167
-0.212
-5.276
1
19
C
615
D
625
-1.930
C_DG615:DC625_D
16
-9.475
0.034
-0.206
-0.088
-2.425
1
20
C
616
D
624
0.841
C_DT616:DA624_D
17
-13.835
-0.441
0.137
-0.393
2.560
1
19
C
617
D
623
0.435
C_DC617:DG623_D
18
-1.241
0.263
-0.278
-0.442
8.012
1
20
C
618
D
622
2.071
C_DA618:DT622_D
19
-19.605
0.127
0.273
-0.055
7.294
1
19
C
619
D
621
-3.501
C_DG619:DC621_D
20
-12.480
0.709
-0.067
0.131
3.407
40.795
C
C
600
601
16.159
D
D
640
639
3.287
11.124
0.399
1.025
CC_DC600DA601:DT639DG640_DD
1
-2.822
4.099
39.213
0.188
-0.898
3.485
39.618
C
C
601
602
18.835
D
D
639
638
3.576
12.542
-0.532
0.148
CC_DA601DA602:DT638DT639_DD
2
-3.946
5.926
37.456
-1.414
0.272
3.055
30.643
C
C
602
603
-3.226
D
D
638
637
2.970
-1.703
1.098
-0.643
CC_DA602DC603:DG637DT638_DD
3
1.675
-3.173
30.552
-0.906
-1.774
3.530
38.079
C
C
603
604
11.357
D
D
637
636
3.624
7.367
-0.707
-0.170
CC_DC603DT604:DA636DG637_DD
4
-0.108
0.167
37.386
-1.292
1.069
2.983
46.698
C
C
604
605
-8.865
D
D
636
635
3.291
-7.003
-0.064
1.919
CC_DT604DA605:DT635DA636_DD
5
1.345
-1.703
46.180
2.984
0.190
3.309
30.617
C
C
605
606
9.897
D
D
635
634
3.299
5.202
-0.556
0.362
CC_DA605DG606:DC634DT635_DD
6
0.228
-0.434
30.181
-0.361
1.099
3.370
32.991
C
C
606
607
15.359
D
D
634
633
3.402
8.625
0.266
0.354
CC_DG606DG607:DC633DC634_DD
7
-1.079
1.921
31.856
-0.920
-0.662
2.957
32.241
C
C
607
608
9.317
D
D
633
632
2.989
5.145
-0.504
-0.194
CC_DG607DT608:DA632DC633_DD
8
-3.127
5.663
31.688
-1.190
0.398
3.367
39.282
C
C
608
609
-3.153
D
D
632
631
3.202
-2.100
1.440
1.449
CC_DT608DC609:DG631DA632_DD
9
9.293
-13.952
38.154
2.411
-1.014
3.139
42.100
C
C
609
610
5.854
D
D
631
630
3.000
4.182
-0.314
1.479
CC_DC609DA610:DT630DG631_DD
10
-6.803
9.523
41.369
1.649
-0.229
3.433
31.666
C
C
610
611
4.908
D
D
630
629
3.374
2.654
1.102
-1.087
CC_DA610DC611:DG629DT630_DD
11
7.044
-13.027
30.780
-2.509
-0.647
3.351
33.543
C
C
611
612
18.596
D
D
629
628
3.693
10.560
-0.854
-0.525
CC_DC6115IU612:DA628DG629_DD
12
0.136
-0.239
31.883
-2.827
1.505
3.291
38.554
C
C
612
613
-2.903
D
D
628
627
3.045
-1.904
-1.638
0.270
CC_5IU612DA613:DT627DA628_DD
13
-7.863
11.991
37.728
0.639
1.528
3.447
31.089
C
C
613
614
-1.679
D
D
627
626
3.395
-0.899
0.805
-0.598
CC_DA613DG614:DC626DT627_DD
14
1.631
-3.045
31.034
-0.935
-1.176
3.542
40.420
C
C
614
615
10.510
D
D
626
625
3.561
7.203
-0.981
-0.380
CC_DG614DG615:DC625DC626_DD
15
-5.647
8.238
39.412
-1.441
0.723
3.182
29.525
C
C
615
616
-3.858
D
D
625
624
3.137
-1.964
-0.159
-0.740
CC_DG615DT616:DA624DC625_DD
16
-0.897
1.762
29.448
-1.047
0.128
3.587
41.034
C
C
616
617
4.333
D
D
624
623
3.332
3.028
1.263
1.959
CC_DT616DC617:DG623DA624_DD
17
5.008
-7.167
40.632
2.445
-1.222
3.320
36.471
C
C
617
618
4.194
D
D
623
622
3.183
2.619
-0.559
1.518
CC_DC617DA618:DT622DG623_DD
18
-3.736
5.984
36.194
2.063
0.377
3.465
39.917
C
C
618
619
-1.488
D
D
622
621
3.467
-1.016
0.141
0.172
CC_DA618DG619:DC621DT622_DD
19
1.454
-2.131
39.879
0.376
-0.029
database_2
diffrn_source
pdbx_initial_refinement_model
struct_conn
struct_conn_type
struct_ref_seq_dif
struct_site
repository
Initial release
Version format compliance
Version format compliance
Data collection
Database references
Derived calculations
Refinement description
1
0
1998-10-21
1
1
2008-05-22
1
2
2011-07-13
1
3
2023-08-02
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_diffrn_source.pdbx_synchrotron_site
_struct_conn.conn_type_id
_struct_conn.id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn_type.id
_struct_ref_seq_dif.details
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
NDB
Y
NDB
1998-03-04
REL
REL
ZN
ZINC ION
HOH
water
2NLL
PDB ENTRY 2NLL (TR PORTION)
PDB
experimental model
ZN
550
4
ZN
ZN
550
A
ZN
551
4
ZN
ZN
551
A
ZN
450
4
ZN
ZN
450
B
ZN
451
4
ZN
ZN
451
B
HOH
704
5
HOH
HOH
704
C
HOH
719
5
HOH
HOH
719
C
HOH
722
5
HOH
HOH
722
C
HOH
734
5
HOH
HOH
734
C
HOH
735
5
HOH
HOH
735
C
HOH
737
5
HOH
HOH
737
C
HOH
742
5
HOH
HOH
742
C
HOH
743
5
HOH
HOH
743
C
HOH
749
5
HOH
HOH
749
C
HOH
750
5
HOH
HOH
750
C
HOH
753
5
HOH
HOH
753
C
HOH
777
5
HOH
HOH
777
C
HOH
778
5
HOH
HOH
778
C
HOH
782
5
HOH
HOH
782
C
HOH
783
5
HOH
HOH
783
C
HOH
789
5
HOH
HOH
789
C
HOH
792
5
HOH
HOH
792
C
HOH
798
5
HOH
HOH
798
C
HOH
801
5
HOH
HOH
801
C
HOH
805
5
HOH
HOH
805
C
HOH
806
5
HOH
HOH
806
C
HOH
807
5
HOH
HOH
807
C
HOH
809
5
HOH
HOH
809
C
HOH
811
5
HOH
HOH
811
C
HOH
814
5
HOH
HOH
814
C
HOH
815
5
HOH
HOH
815
C
HOH
817
5
HOH
HOH
817
C
HOH
818
5
HOH
HOH
818
C
HOH
821
5
HOH
HOH
821
C
HOH
823
5
HOH
HOH
823
C
HOH
825
5
HOH
HOH
825
C
HOH
840
5
HOH
HOH
840
C
HOH
847
5
HOH
HOH
847
C
HOH
849
5
HOH
HOH
849
C
HOH
850
5
HOH
HOH
850
C
HOH
851
5
HOH
HOH
851
C
HOH
857
5
HOH
HOH
857
C
HOH
858
5
HOH
HOH
858
C
HOH
861
5
HOH
HOH
861
C
HOH
866
5
HOH
HOH
866
C
HOH
867
5
HOH
HOH
867
C
HOH
868
5
HOH
HOH
868
C
HOH
872
5
HOH
HOH
872
C
HOH
875
5
HOH
HOH
875
C
HOH
876
5
HOH
HOH
876
C
HOH
877
5
HOH
HOH
877
C
HOH
878
5
HOH
HOH
878
C
HOH
880
5
HOH
HOH
880
C
HOH
881
5
HOH
HOH
881
C
HOH
882
5
HOH
HOH
882
C
HOH
887
5
HOH
HOH
887
C
HOH
893
5
HOH
HOH
893
C
HOH
895
5
HOH
HOH
895
C
HOH
917
5
HOH
HOH
917
C
HOH
919
5
HOH
HOH
919
C
HOH
926
5
HOH
HOH
926
C
HOH
929
5
HOH
HOH
929
C
HOH
932
5
HOH
HOH
932
C
HOH
701
5
HOH
HOH
701
D
HOH
702
5
HOH
HOH
702
D
HOH
703
5
HOH
HOH
703
D
HOH
706
5
HOH
HOH
706
D
HOH
712
5
HOH
HOH
712
D
HOH
713
5
HOH
HOH
713
D
HOH
714
5
HOH
HOH
714
D
HOH
715
5
HOH
HOH
715
D
HOH
716
5
HOH
HOH
716
D
HOH
720
5
HOH
HOH
720
D
HOH
723
5
HOH
HOH
723
D
HOH
726
5
HOH
HOH
726
D
HOH
728
5
HOH
HOH
728
D
HOH
731
5
HOH
HOH
731
D
HOH
738
5
HOH
HOH
738
D
HOH
739
5
HOH
HOH
739
D
HOH
740
5
HOH
HOH
740
D
HOH
744
5
HOH
HOH
744
D
HOH
745
5
HOH
HOH
745
D
HOH
746
5
HOH
HOH
746
D
HOH
757
5
HOH
HOH
757
D
HOH
758
5
HOH
HOH
758
D
HOH
759
5
HOH
HOH
759
D
HOH
761
5
HOH
HOH
761
D
HOH
776
5
HOH
HOH
776
D
HOH
781
5
HOH
HOH
781
D
HOH
791
5
HOH
HOH
791
D
HOH
794
5
HOH
HOH
794
D
HOH
796
5
HOH
HOH
796
D
HOH
803
5
HOH
HOH
803
D
HOH
804
5
HOH
HOH
804
D
HOH
808
5
HOH
HOH
808
D
HOH
810
5
HOH
HOH
810
D
HOH
819
5
HOH
HOH
819
D
HOH
820
5
HOH
HOH
820
D
HOH
822
5
HOH
HOH
822
D
HOH
824
5
HOH
HOH
824
D
HOH
827
5
HOH
HOH
827
D
HOH
828
5
HOH
HOH
828
D
HOH
829
5
HOH
HOH
829
D
HOH
830
5
HOH
HOH
830
D
HOH
831
5
HOH
HOH
831
D
HOH
832
5
HOH
HOH
832
D
HOH
833
5
HOH
HOH
833
D
HOH
834
5
HOH
HOH
834
D
HOH
835
5
HOH
HOH
835
D
HOH
836
5
HOH
HOH
836
D
HOH
837
5
HOH
HOH
837
D
HOH
838
5
HOH
HOH
838
D
HOH
839
5
HOH
HOH
839
D
HOH
841
5
HOH
HOH
841
D
HOH
845
5
HOH
HOH
845
D
HOH
860
5
HOH
HOH
860
D
HOH
863
5
HOH
HOH
863
D
HOH
865
5
HOH
HOH
865
D
HOH
869
5
HOH
HOH
869
D
HOH
870
5
HOH
HOH
870
D
HOH
871
5
HOH
HOH
871
D
HOH
873
5
HOH
HOH
873
D
HOH
874
5
HOH
HOH
874
D
HOH
879
5
HOH
HOH
879
D
HOH
891
5
HOH
HOH
891
D
HOH
897
5
HOH
HOH
897
D
HOH
898
5
HOH
HOH
898
D
HOH
906
5
HOH
HOH
906
D
HOH
907
5
HOH
HOH
907
D
HOH
908
5
HOH
HOH
908
D
HOH
909
5
HOH
HOH
909
D
HOH
910
5
HOH
HOH
910
D
HOH
911
5
HOH
HOH
911
D
HOH
912
5
HOH
HOH
912
D
HOH
916
5
HOH
HOH
916
D
HOH
920
5
HOH
HOH
920
D
HOH
922
5
HOH
HOH
922
D
HOH
930
5
HOH
HOH
930
D
HOH
931
5
HOH
HOH
931
D
HOH
933
5
HOH
HOH
933
D
HOH
709
5
HOH
HOH
709
A
HOH
710
5
HOH
HOH
710
A
HOH
711
5
HOH
HOH
711
A
HOH
721
5
HOH
HOH
721
A
HOH
724
5
HOH
HOH
724
A
HOH
725
5
HOH
HOH
725
A
HOH
727
5
HOH
HOH
727
A
HOH
729
5
HOH
HOH
729
A
HOH
730
5
HOH
HOH
730
A
HOH
733
5
HOH
HOH
733
A
HOH
747
5
HOH
HOH
747
A
HOH
762
5
HOH
HOH
762
A
HOH
770
5
HOH
HOH
770
A
HOH
771
5
HOH
HOH
771
A
HOH
772
5
HOH
HOH
772
A
HOH
774
5
HOH
HOH
774
A
HOH
775
5
HOH
HOH
775
A
HOH
787
5
HOH
HOH
787
A
HOH
788
5
HOH
HOH
788
A
HOH
790
5
HOH
HOH
790
A
HOH
812
5
HOH
HOH
812
A
HOH
826
5
HOH
HOH
826
A
HOH
842
5
HOH
HOH
842
A
HOH
843
5
HOH
HOH
843
A
HOH
844
5
HOH
HOH
844
A
HOH
846
5
HOH
HOH
846
A
HOH
864
5
HOH
HOH
864
A
HOH
883
5
HOH
HOH
883
A
HOH
884
5
HOH
HOH
884
A
HOH
885
5
HOH
HOH
885
A
HOH
900
5
HOH
HOH
900
A
HOH
903
5
HOH
HOH
903
A
HOH
915
5
HOH
HOH
915
A
HOH
918
5
HOH
HOH
918
A
HOH
924
5
HOH
HOH
924
A
HOH
925
5
HOH
HOH
925
A
HOH
927
5
HOH
HOH
927
A
HOH
928
5
HOH
HOH
928
A
HOH
700
5
HOH
HOH
700
B
HOH
705
5
HOH
HOH
705
B
HOH
707
5
HOH
HOH
707
B
HOH
708
5
HOH
HOH
708
B
HOH
717
5
HOH
HOH
717
B
HOH
718
5
HOH
HOH
718
B
HOH
732
5
HOH
HOH
732
B
HOH
736
5
HOH
HOH
736
B
HOH
741
5
HOH
HOH
741
B
HOH
748
5
HOH
HOH
748
B
HOH
751
5
HOH
HOH
751
B
HOH
752
5
HOH
HOH
752
B
HOH
754
5
HOH
HOH
754
B
HOH
755
5
HOH
HOH
755
B
HOH
756
5
HOH
HOH
756
B
HOH
760
5
HOH
HOH
760
B
HOH
763
5
HOH
HOH
763
B
HOH
764
5
HOH
HOH
764
B
HOH
765
5
HOH
HOH
765
B
HOH
766
5
HOH
HOH
766
B
HOH
767
5
HOH
HOH
767
B
HOH
768
5
HOH
HOH
768
B
HOH
769
5
HOH
HOH
769
B
HOH
773
5
HOH
HOH
773
B
HOH
779
5
HOH
HOH
779
B
HOH
780
5
HOH
HOH
780
B
HOH
784
5
HOH
HOH
784
B
HOH
785
5
HOH
HOH
785
B
HOH
786
5
HOH
HOH
786
B
HOH
793
5
HOH
HOH
793
B
HOH
795
5
HOH
HOH
795
B
HOH
797
5
HOH
HOH
797
B
HOH
799
5
HOH
HOH
799
B
HOH
800
5
HOH
HOH
800
B
HOH
802
5
HOH
HOH
802
B
HOH
813
5
HOH
HOH
813
B
HOH
816
5
HOH
HOH
816
B
HOH
848
5
HOH
HOH
848
B
HOH
852
5
HOH
HOH
852
B
HOH
853
5
HOH
HOH
853
B
HOH
854
5
HOH
HOH
854
B
HOH
855
5
HOH
HOH
855
B
HOH
856
5
HOH
HOH
856
B
HOH
859
5
HOH
HOH
859
B
HOH
862
5
HOH
HOH
862
B
HOH
886
5
HOH
HOH
886
B
HOH
888
5
HOH
HOH
888
B
HOH
889
5
HOH
HOH
889
B
HOH
890
5
HOH
HOH
890
B
HOH
892
5
HOH
HOH
892
B
HOH
894
5
HOH
HOH
894
B
HOH
896
5
HOH
HOH
896
B
HOH
899
5
HOH
HOH
899
B
HOH
901
5
HOH
HOH
901
B
HOH
902
5
HOH
HOH
902
B
HOH
904
5
HOH
HOH
904
B
HOH
905
5
HOH
HOH
905
B
HOH
913
5
HOH
HOH
913
B
HOH
914
5
HOH
HOH
914
B
HOH
921
5
HOH
HOH
921
B
HOH
923
5
HOH
HOH
923
B
C
600
n
1
DC
600
C
A
601
n
2
DA
601
C
A
602
n
3
DA
602
C
C
603
n
4
DC
603
C
T
604
n
5
DT
604
C
A
605
n
6
DA
605
C
G
606
n
7
DG
606
C
G
607
n
8
DG
607
C
T
608
n
9
DT
608
C
C
609
n
10
DC
609
C
A
610
n
11
DA
610
C
C
611
n
12
DC
611
C
+U
612
n
13
5IU
612
C
A
613
n
14
DA
613
C
G
614
n
15
DG
614
C
G
615
n
16
DG
615
C
T
616
n
17
DT
616
C
C
617
n
18
DC
617
C
A
618
n
19
DA
618
C
G
619
n
20
DG
619
C
C
621
n
1
DC
621
D
T
622
n
2
DT
622
D
G
623
n
3
DG
623
D
A
624
n
4
DA
624
D
C
625
n
5
DC
625
D
C
626
n
6
DC
626
D
T
627
n
7
DT
627
D
A
628
n
8
DA
628
D
G
629
n
9
DG
629
D
T
630
n
10
DT
630
D
G
631
n
11
DG
631
D
A
632
n
12
DA
632
D
C
633
n
13
DC
633
D
C
634
n
14
DC
634
D
T
635
n
15
DT
635
D
A
636
n
16
DA
636
D
G
637
n
17
DG
637
D
T
638
n
18
DT
638
D
T
639
n
19
DT
639
D
G
640
n
20
DG
640
D
n
1
92
A
n
2
93
A
n
3
94
A
n
4
95
A
n
5
96
A
n
6
97
A
n
7
98
A
LEU
99
n
8
LEU
99
A
LEU
100
n
9
LEU
100
A
CYS
101
n
10
CYS
101
A
LYS
102
n
11
LYS
102
A
VAL
103
n
12
VAL
103
A
CYS
104
n
13
CYS
104
A
GLY
105
n
14
GLY
105
A
ASP
106
n
15
ASP
106
A
VAL
107
n
16
VAL
107
A
ALA
108
n
17
ALA
108
A
SER
109
n
18
SER
109
A
GLY
110
n
19
GLY
110
A
PHE
111
n
20
PHE
111
A
HIS
112
n
21
HIS
112
A
TYR
113
n
22
TYR
113
A
GLY
114
n
23
GLY
114
A
VAL
115
n
24
VAL
115
A
LEU
116
n
25
LEU
116
A
ALA
117
n
26
ALA
117
A
CYS
118
n
27
CYS
118
A
GLU
119
n
28
GLU
119
A
GLY
120
n
29
GLY
120
A
CYS
121
n
30
CYS
121
A
LYS
122
n
31
LYS
122
A
GLY
123
n
32
GLY
123
A
PHE
124
n
33
PHE
124
A
PHE
125
n
34
PHE
125
A
ARG
126
n
35
ARG
126
A
ARG
127
n
36
ARG
127
A
SER
128
n
37
SER
128
A
ILE
129
n
38
ILE
129
A
GLN
130
n
39
GLN
130
A
GLN
131
n
40
GLN
131
A
ASN
132
n
41
ASN
132
A
ILE
133
n
42
ILE
133
A
GLN
133
n
43
A
GLN
133
A
TYR
134
n
44
TYR
134
A
LYS
135
n
45
LYS
135
A
ARG
136
n
46
ARG
136
A
CYS
137
n
47
CYS
137
A
LEU
138
n
48
LEU
138
A
LYS
139
n
49
LYS
139
A
ASN
140
n
50
ASN
140
A
GLU
141
n
51
GLU
141
A
ASN
142
n
52
ASN
142
A
CYS
143
n
53
CYS
143
A
SER
144
n
54
SER
144
A
ILE
145
n
55
ILE
145
A
VAL
146
n
56
VAL
146
A
ARG
147
n
57
ARG
147
A
ILE
148
n
58
ILE
148
A
ASN
149
n
59
ASN
149
A
ARG
150
n
60
ARG
150
A
ASN
151
n
61
ASN
151
A
ARG
152
n
62
ARG
152
A
CYS
153
n
63
CYS
153
A
GLN
154
n
64
GLN
154
A
GLN
155
n
65
GLN
155
A
CYS
156
n
66
CYS
156
A
ARG
157
n
67
ARG
157
A
PHE
158
n
68
PHE
158
A
LYS
159
n
69
LYS
159
A
LYS
160
n
70
LYS
160
A
CYS
161
n
71
CYS
161
A
LEU
162
n
72
LEU
162
A
SER
163
n
73
SER
163
A
VAL
164
n
74
VAL
164
A
GLY
165
n
75
GLY
165
A
MET
166
n
76
MET
166
A
SER
167
n
77
SER
167
A
ARG
168
n
78
ARG
168
A
ASP
169
n
79
ASP
169
A
ALA
170
n
80
ALA
170
A
VAL
171
n
81
VAL
171
A
ARG
172
n
82
ARG
172
A
PHE
173
n
83
PHE
173
A
GLY
174
n
84
GLY
174
A
ARG
175
n
85
ARG
175
A
n
86
176
A
n
87
177
A
n
88
178
A
n
89
179
A
n
90
180
A
n
91
181
A
n
92
182
A
n
93
183
A
n
94
184
A
n
1
92
B
n
2
93
B
n
3
94
B
n
4
95
B
GLY
96
n
5
GLY
96
B
MET
97
n
6
MET
97
B
VAL
98
n
7
VAL
98
B
LEU
99
n
8
LEU
99
B
LEU
100
n
9
LEU
100
B
CYS
101
n
10
CYS
101
B
LYS
102
n
11
LYS
102
B
VAL
103
n
12
VAL
103
B
CYS
104
n
13
CYS
104
B
GLY
105
n
14
GLY
105
B
ASP
106
n
15
ASP
106
B
VAL
107
n
16
VAL
107
B
ALA
108
n
17
ALA
108
B
SER
109
n
18
SER
109
B
GLY
110
n
19
GLY
110
B
PHE
111
n
20
PHE
111
B
HIS
112
n
21
HIS
112
B
TYR
113
n
22
TYR
113
B
GLY
114
n
23
GLY
114
B
VAL
115
n
24
VAL
115
B
LEU
116
n
25
LEU
116
B
ALA
117
n
26
ALA
117
B
CYS
118
n
27
CYS
118
B
GLU
119
n
28
GLU
119
B
GLY
120
n
29
GLY
120
B
CYS
121
n
30
CYS
121
B
LYS
122
n
31
LYS
122
B
GLY
123
n
32
GLY
123
B
PHE
124
n
33
PHE
124
B
PHE
125
n
34
PHE
125
B
ARG
126
n
35
ARG
126
B
ARG
127
n
36
ARG
127
B
SER
128
n
37
SER
128
B
ILE
129
n
38
ILE
129
B
GLN
130
n
39
GLN
130
B
GLN
131
n
40
GLN
131
B
ASN
132
n
41
ASN
132
B
ILE
133
n
42
ILE
133
B
GLN
133
n
43
A
GLN
133
B
TYR
134
n
44
TYR
134
B
LYS
135
n
45
LYS
135
B
ARG
136
n
46
ARG
136
B
CYS
137
n
47
CYS
137
B
LEU
138
n
48
LEU
138
B
LYS
139
n
49
LYS
139
B
ASN
140
n
50
ASN
140
B
GLU
141
n
51
GLU
141
B
ASN
142
n
52
ASN
142
B
CYS
143
n
53
CYS
143
B
SER
144
n
54
SER
144
B
ILE
145
n
55
ILE
145
B
VAL
146
n
56
VAL
146
B
ARG
147
n
57
ARG
147
B
ILE
148
n
58
ILE
148
B
ASN
149
n
59
ASN
149
B
ARG
150
n
60
ARG
150
B
ASN
151
n
61
ASN
151
B
ARG
152
n
62
ARG
152
B
CYS
153
n
63
CYS
153
B
GLN
154
n
64
GLN
154
B
GLN
155
n
65
GLN
155
B
CYS
156
n
66
CYS
156
B
ARG
157
n
67
ARG
157
B
PHE
158
n
68
PHE
158
B
LYS
159
n
69
LYS
159
B
LYS
160
n
70
LYS
160
B
CYS
161
n
71
CYS
161
B
LEU
162
n
72
LEU
162
B
SER
163
n
73
SER
163
B
VAL
164
n
74
VAL
164
B
GLY
165
n
75
GLY
165
B
MET
166
n
76
MET
166
B
SER
167
n
77
SER
167
B
ARG
168
n
78
ARG
168
B
ASP
169
n
79
ASP
169
B
ALA
170
n
80
ALA
170
B
VAL
171
n
81
VAL
171
B
ARG
172
n
82
ARG
172
B
PHE
173
n
83
PHE
173
B
GLY
174
n
84
GLY
174
B
ARG
175
n
85
ARG
175
B
ILE
176
n
86
ILE
176
B
PRO
177
n
87
PRO
177
B
LYS
178
n
88
LYS
178
B
n
89
179
B
n
90
180
B
n
91
181
B
n
92
182
B
n
93
183
B
n
94
184
B
author_defined_assembly
4
tetrameric
A
CYS
101
C
SG
CYS
10
1_555
A
ZN
550
E
ZN
ZN
1_555
A
CYS
104
C
SG
CYS
13
1_555
105.9
A
CYS
101
C
SG
CYS
10
1_555
A
ZN
550
E
ZN
ZN
1_555
A
CYS
118
C
SG
CYS
27
1_555
105.1
A
CYS
104
C
SG
CYS
13
1_555
A
ZN
550
E
ZN
ZN
1_555
A
CYS
118
C
SG
CYS
27
1_555
99.1
A
CYS
101
C
SG
CYS
10
1_555
A
ZN
550
E
ZN
ZN
1_555
A
CYS
121
C
SG
CYS
30
1_555
108.6
A
CYS
104
C
SG
CYS
13
1_555
A
ZN
550
E
ZN
ZN
1_555
A
CYS
121
C
SG
CYS
30
1_555
114.2
A
CYS
118
C
SG
CYS
27
1_555
A
ZN
550
E
ZN
ZN
1_555
A
CYS
121
C
SG
CYS
30
1_555
122.4
A
CYS
137
C
SG
CYS
47
1_555
A
ZN
551
F
ZN
ZN
1_555
A
CYS
143
C
SG
CYS
53
1_555
129.0
A
CYS
137
C
SG
CYS
47
1_555
A
ZN
551
F
ZN
ZN
1_555
A
CYS
153
C
SG
CYS
63
1_555
107.7
A
CYS
143
C
SG
CYS
53
1_555
A
ZN
551
F
ZN
ZN
1_555
A
CYS
153
C
SG
CYS
63
1_555
109.4
A
CYS
137
C
SG
CYS
47
1_555
A
ZN
551
F
ZN
ZN
1_555
A
CYS
156
C
SG
CYS
66
1_555
117.1
A
CYS
143
C
SG
CYS
53
1_555
A
ZN
551
F
ZN
ZN
1_555
A
CYS
156
C
SG
CYS
66
1_555
93.2
A
CYS
153
C
SG
CYS
63
1_555
A
ZN
551
F
ZN
ZN
1_555
A
CYS
156
C
SG
CYS
66
1_555
94.9
B
CYS
101
D
SG
CYS
10
1_555
B
ZN
450
G
ZN
ZN
1_555
B
CYS
104
D
SG
CYS
13
1_555
103.7
B
CYS
101
D
SG
CYS
10
1_555
B
ZN
450
G
ZN
ZN
1_555
B
CYS
118
D
SG
CYS
27
1_555
126.5
B
CYS
104
D
SG
CYS
13
1_555
B
ZN
450
G
ZN
ZN
1_555
B
CYS
118
D
SG
CYS
27
1_555
110.5
B
CYS
101
D
SG
CYS
10
1_555
B
ZN
450
G
ZN
ZN
1_555
B
CYS
121
D
SG
CYS
30
1_555
104.5
B
CYS
104
D
SG
CYS
13
1_555
B
ZN
450
G
ZN
ZN
1_555
B
CYS
121
D
SG
CYS
30
1_555
114.9
B
CYS
118
D
SG
CYS
27
1_555
B
ZN
450
G
ZN
ZN
1_555
B
CYS
121
D
SG
CYS
30
1_555
96.9
B
CYS
137
D
SG
CYS
47
1_555
B
ZN
451
H
ZN
ZN
1_555
B
CYS
143
D
SG
CYS
53
1_555
106.1
B
CYS
137
D
SG
CYS
47
1_555
B
ZN
451
H
ZN
ZN
1_555
B
CYS
153
D
SG
CYS
63
1_555
100.6
B
CYS
143
D
SG
CYS
53
1_555
B
ZN
451
H
ZN
ZN
1_555
B
CYS
153
D
SG
CYS
63
1_555
126.1
B
CYS
137
D
SG
CYS
47
1_555
B
ZN
451
H
ZN
ZN
1_555
B
CYS
156
D
SG
CYS
66
1_555
100.5
B
CYS
143
D
SG
CYS
53
1_555
B
ZN
451
H
ZN
ZN
1_555
B
CYS
156
D
SG
CYS
66
1_555
98.9
B
CYS
153
D
SG
CYS
63
1_555
B
ZN
451
H
ZN
ZN
1_555
B
CYS
156
D
SG
CYS
66
1_555
121.2
C
5IU
612
5-IODO-2'-DEOXYURIDINE-5'-MONOPHOSPHATE
A
5IU
13
DU
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
O
GLY
110
C
O
GLY
19
A
N
ALA
117
C
N
ALA
26
1
B
CG
MET
97
D
CG
MET
6
1
Y
1
B
SD
MET
97
D
SD
MET
6
1
Y
1
B
CE
MET
97
D
CE
MET
6
1
Y
1
A
THR
92
C
THR
1
1
Y
1
A
LYS
93
C
LYS
2
1
Y
1
A
LEU
94
C
LEU
3
1
Y
1
A
ASN
95
C
ASN
4
1
Y
1
A
GLY
96
C
GLY
5
1
Y
1
A
MET
97
C
MET
6
1
Y
1
A
VAL
98
C
VAL
7
1
Y
1
A
ILE
176
C
ILE
86
1
Y
1
A
PRO
177
C
PRO
87
1
Y
1
A
LYS
178
C
LYS
88
1
Y
1
A
ARG
179
C
ARG
89
1
Y
1
A
GLU
180
C
GLU
90
1
Y
1
A
LYS
181
C
LYS
91
1
Y
1
A
GLN
182
C
GLN
92
1
Y
1
A
ARG
183
C
ARG
93
1
Y
1
A
MET
184
C
MET
94
1
Y
1
B
THR
92
D
THR
1
1
Y
1
B
LYS
93
D
LYS
2
1
Y
1
B
LEU
94
D
LEU
3
1
Y
1
B
ASN
95
D
ASN
4
1
Y
1
B
ARG
179
D
ARG
89
1
Y
1
B
GLU
180
D
GLU
90
1
Y
1
B
LYS
181
D
LYS
91
1
Y
1
B
GLN
182
D
GLN
92
1
Y
1
B
ARG
183
D
ARG
93
1
Y
1
B
MET
184
D
MET
94
1
Y
1
D
D
OP2
O
DG
HOH
640
720
1.96
1
C
C
N4
O
DC
HOH
609
778
2.10
1
A
A
NE2
O
HIS
HOH
112
788
2.17
1
D
D
OP2
O
DT
HOH
627
712
2.17
1
C
DC
603
0.062
SIDE CHAIN
1
C
DC
611
0.073
SIDE CHAIN
1
D
DG
631
0.066
SIDE CHAIN
1
D
DA
632
0.057
SIDE CHAIN
1
-16.22
2.30
111.70
95.48
B
B
B
CD
CE
NZ
LYS
LYS
LYS
139
139
139
N
1
3.37
0.50
120.30
123.67
B
B
B
NE
CZ
NH2
ARG
ARG
ARG
147
147
147
N
1
A
LYS
102
-74.89
21.40
1
A
CYS
104
-148.03
29.48
1
A
TYR
113
43.04
28.17
1
A
GLN
130
-80.27
34.19
1
A
ASN
132
-99.13
41.85
A
1
A
GLN
133
-113.57
61.06
1
A
TYR
134
-29.49
123.80
1
A
ARG
136
-44.11
167.56
1
A
GLU
141
40.06
19.49
1
A
LEU
162
-76.59
39.14
1
A
SER
163
-146.51
-24.91
1
B
TYR
113
47.53
19.70
1
B
ILE
133
-60.53
98.57
1
B
ARG
136
-69.48
-173.68
1
B
LEU
138
-44.66
-10.02
1
B
GLN
154
-58.42
-71.96
1
B
GLN
155
-23.79
-48.69
1
B
MET
166
-51.35
108.73
1
B
ARG
175
-18.10
142.65
1
B
PRO
177
-68.11
-136.17
PARAMXX4.CPX
TOPHCSDX.PRO
PARAM11X.DNA
TOPH11I.DNA
PARHCSDX.PRO
31.1
THERE IS AN INSERT GLN 133A IN BOTH CHAIN A AND B
0.288
0.1921
2.3
6.0
674
10614
5
97.2
RANDOM
10000000.00
0.001
1
RESTRAINED
THROUGHOUT
2
MOLECULAR REPLACEMENT
PDB ENTRY 2NLL (TR PORTION)
2.3
6.0
234
2334
5
813
1282
0.011
1.805
22.08
0.995
0.313
0.2864
2.4
47
966
8
4.6
94.1
2.3
19.4
1A6Y
13482
2
0.088
1
15.1
3.6
97.3
2.3
2.38
2.8
0.492
94
phasing
AMoRE
refinement
X-PLOR
3.84
data reduction
DENZO
data scaling
SCALEPACK
REVERBA ORPHAN NUCLEAR RECEPTOR/DNA COMPLEX
1
N
N
2
N
N
3
N
N
3
N
N
4
N
N
4
N
N
4
N
N
4
N
N
5
N
N
5
N
N
5
N
N
5
N
N
A
GLU
119
C
GLU
28
HELX_P
A
ILE
129
C
ILE
38
1
1
11
A
GLN
154
C
GLN
64
HELX_P
A
SER
163
C
SER
73
1
2
10
B
GLU
119
D
GLU
28
HELX_P
B
ILE
129
D
ILE
38
1
3
11
B
GLN
154
D
GLN
64
HELX_P
B
VAL
164
D
VAL
74
1
4
11
covale
1.617
both
C
DC
611
A
O3'
DC
12
1_555
C
5IU
612
A
P
5IU
13
1_555
covale
1.618
both
C
5IU
612
A
O3'
5IU
13
1_555
C
DA
613
A
P
DA
14
1_555
metalc
2.342
A
CYS
101
C
SG
CYS
10
1_555
A
ZN
550
E
ZN
ZN
1_555
metalc
2.406
A
CYS
104
C
SG
CYS
13
1_555
A
ZN
550
E
ZN
ZN
1_555
metalc
2.315
A
CYS
118
C
SG
CYS
27
1_555
A
ZN
550
E
ZN
ZN
1_555
metalc
2.181
A
CYS
121
C
SG
CYS
30
1_555
A
ZN
550
E
ZN
ZN
1_555
metalc
2.252
A
CYS
137
C
SG
CYS
47
1_555
A
ZN
551
F
ZN
ZN
1_555
metalc
2.168
A
CYS
143
C
SG
CYS
53
1_555
A
ZN
551
F
ZN
ZN
1_555
metalc
2.342
A
CYS
153
C
SG
CYS
63
1_555
A
ZN
551
F
ZN
ZN
1_555
metalc
2.400
A
CYS
156
C
SG
CYS
66
1_555
A
ZN
551
F
ZN
ZN
1_555
metalc
2.214
B
CYS
101
D
SG
CYS
10
1_555
B
ZN
450
G
ZN
ZN
1_555
metalc
2.351
B
CYS
104
D
SG
CYS
13
1_555
B
ZN
450
G
ZN
ZN
1_555
metalc
2.276
B
CYS
118
D
SG
CYS
27
1_555
B
ZN
450
G
ZN
ZN
1_555
metalc
2.336
B
CYS
121
D
SG
CYS
30
1_555
B
ZN
450
G
ZN
ZN
1_555
metalc
2.338
B
CYS
137
D
SG
CYS
47
1_555
B
ZN
451
H
ZN
ZN
1_555
metalc
2.291
B
CYS
143
D
SG
CYS
53
1_555
B
ZN
451
H
ZN
ZN
1_555
metalc
2.177
B
CYS
153
D
SG
CYS
63
1_555
B
ZN
451
H
ZN
ZN
1_555
metalc
2.315
B
CYS
156
D
SG
CYS
66
1_555
B
ZN
451
H
ZN
ZN
1_555
hydrog
WATSON-CRICK
C
DC
600
A
N3
DC
1
1_555
D
DG
640
B
N1
DG
20
1_555
hydrog
WATSON-CRICK
C
DC
600
A
N4
DC
1
1_555
D
DG
640
B
O6
DG
20
1_555
hydrog
WATSON-CRICK
C
DC
600
A
O2
DC
1
1_555
D
DG
640
B
N2
DG
20
1_555
hydrog
WATSON-CRICK
C
DA
601
A
N1
DA
2
1_555
D
DT
639
B
N3
DT
19
1_555
hydrog
WATSON-CRICK
C
DA
601
A
N6
DA
2
1_555
D
DT
639
B
O4
DT
19
1_555
hydrog
WATSON-CRICK
C
DA
602
A
N1
DA
3
1_555
D
DT
638
B
N3
DT
18
1_555
hydrog
WATSON-CRICK
C
DA
602
A
N6
DA
3
1_555
D
DT
638
B
O4
DT
18
1_555
hydrog
WATSON-CRICK
C
DC
603
A
N3
DC
4
1_555
D
DG
637
B
N1
DG
17
1_555
hydrog
WATSON-CRICK
C
DC
603
A
N4
DC
4
1_555
D
DG
637
B
O6
DG
17
1_555
hydrog
WATSON-CRICK
C
DC
603
A
O2
DC
4
1_555
D
DG
637
B
N2
DG
17
1_555
hydrog
WATSON-CRICK
C
DT
604
A
N3
DT
5
1_555
D
DA
636
B
N1
DA
16
1_555
hydrog
WATSON-CRICK
C
DT
604
A
O4
DT
5
1_555
D
DA
636
B
N6
DA
16
1_555
hydrog
DA-DT PAIR
C
DA
605
A
N1
DA
6
1_555
D
DT
635
B
N3
DT
15
1_555
hydrog
WATSON-CRICK
C
DG
606
A
N1
DG
7
1_555
D
DC
634
B
N3
DC
14
1_555
hydrog
WATSON-CRICK
C
DG
606
A
N2
DG
7
1_555
D
DC
634
B
O2
DC
14
1_555
hydrog
WATSON-CRICK
C
DG
606
A
O6
DG
7
1_555
D
DC
634
B
N4
DC
14
1_555
hydrog
DG-DC PAIR
C
DG
607
A
N1
DG
8
1_555
D
DC
633
B
N3
DC
13
1_555
hydrog
WATSON-CRICK
C
DT
608
A
N3
DT
9
1_555
D
DA
632
B
N1
DA
12
1_555
hydrog
WATSON-CRICK
C
DT
608
A
O4
DT
9
1_555
D
DA
632
B
N6
DA
12
1_555
hydrog
WATSON-CRICK
C
DC
609
A
N3
DC
10
1_555
D
DG
631
B
N1
DG
11
1_555
hydrog
WATSON-CRICK
C
DC
609
A
N4
DC
10
1_555
D
DG
631
B
O6
DG
11
1_555
hydrog
WATSON-CRICK
C
DC
609
A
O2
DC
10
1_555
D
DG
631
B
N2
DG
11
1_555
hydrog
WATSON-CRICK
C
DA
610
A
N1
DA
11
1_555
D
DT
630
B
N3
DT
10
1_555
hydrog
WATSON-CRICK
C
DA
610
A
N6
DA
11
1_555
D
DT
630
B
O4
DT
10
1_555
hydrog
WATSON-CRICK
C
DC
611
A
N3
DC
12
1_555
D
DG
629
B
N1
DG
9
1_555
hydrog
WATSON-CRICK
C
DC
611
A
N4
DC
12
1_555
D
DG
629
B
O6
DG
9
1_555
hydrog
WATSON-CRICK
C
DC
611
A
O2
DC
12
1_555
D
DG
629
B
N2
DG
9
1_555
hydrog
WATSON-CRICK
C
5IU
612
A
N3
5IU
13
1_555
D
DA
628
B
N1
DA
8
1_555
hydrog
WATSON-CRICK
C
5IU
612
A
O4
5IU
13
1_555
D
DA
628
B
N6
DA
8
1_555
hydrog
WATSON-CRICK
C
DA
613
A
N1
DA
14
1_555
D
DT
627
B
N3
DT
7
1_555
hydrog
WATSON-CRICK
C
DA
613
A
N6
DA
14
1_555
D
DT
627
B
O4
DT
7
1_555
hydrog
WATSON-CRICK
C
DG
614
A
N1
DG
15
1_555
D
DC
626
B
N3
DC
6
1_555
hydrog
WATSON-CRICK
C
DG
614
A
N2
DG
15
1_555
D
DC
626
B
O2
DC
6
1_555
hydrog
WATSON-CRICK
C
DG
614
A
O6
DG
15
1_555
D
DC
626
B
N4
DC
6
1_555
hydrog
WATSON-CRICK
C
DG
615
A
N1
DG
16
1_555
D
DC
625
B
N3
DC
5
1_555
hydrog
WATSON-CRICK
C
DG
615
A
N2
DG
16
1_555
D
DC
625
B
O2
DC
5
1_555
hydrog
WATSON-CRICK
C
DG
615
A
O6
DG
16
1_555
D
DC
625
B
N4
DC
5
1_555
hydrog
WATSON-CRICK
C
DT
616
A
N3
DT
17
1_555
D
DA
624
B
N1
DA
4
1_555
hydrog
WATSON-CRICK
C
DT
616
A
O4
DT
17
1_555
D
DA
624
B
N6
DA
4
1_555
hydrog
WATSON-CRICK
C
DC
617
A
N3
DC
18
1_555
D
DG
623
B
N1
DG
3
1_555
hydrog
WATSON-CRICK
C
DC
617
A
N4
DC
18
1_555
D
DG
623
B
O6
DG
3
1_555
hydrog
WATSON-CRICK
C
DC
617
A
O2
DC
18
1_555
D
DG
623
B
N2
DG
3
1_555
hydrog
WATSON-CRICK
C
DA
618
A
N1
DA
19
1_555
D
DT
622
B
N3
DT
2
1_555
hydrog
WATSON-CRICK
C
DA
618
A
N6
DA
19
1_555
D
DT
622
B
O4
DT
2
1_555
hydrog
WATSON-CRICK
C
DG
619
A
N1
DG
20
1_555
D
DC
621
B
N3
DC
1
1_555
hydrog
WATSON-CRICK
C
DG
619
A
N2
DG
20
1_555
D
DC
621
B
O2
DC
1
1_555
hydrog
WATSON-CRICK
C
DG
619
A
O6
DG
20
1_555
D
DC
621
B
N4
DC
1
1_555
TRANSCRIPTION/DNA
ORPHAN RECEPTOR, NUCLEAR RECEPTOR, DNA-BINDING, REVERB, REV-ERB, TRANSCRIPTION REGULATION, TRANSCRIPTION-DNA COMPLEX
NR1D1_HUMAN
UNP
3
123
P20393
1A6Y
PDB
1
1A6Y
1A6Y
PDB
2
1A6Y
123
216
1A6Y
92
184
P20393
A
1
1
94
123
216
1A6Y
92
184
P20393
B
1
1
94
600
619
1A6Y
600
619
1A6Y
C
2
1
20
621
640
1A6Y
621
640
1A6Y
D
3
1
20
1
HIS
cloning artifact
LEU
116
1A6Y
A
P20393
UNP
147
25
2
HIS
cloning artifact
LEU
116
1A6Y
B
P20393
UNP
147
25
2
anti-parallel
A
GLY
110
C
GLY
19
A
HIS
112
C
HIS
21
A
VAL
115
C
VAL
24
A
ALA
117
C
ALA
26
BINDING SITE FOR RESIDUE ZN A 550
A
ZN
550
Software
4
BINDING SITE FOR RESIDUE ZN A 551
A
ZN
551
Software
4
BINDING SITE FOR RESIDUE ZN B 450
B
ZN
450
Software
4
BINDING SITE FOR RESIDUE ZN B 451
B
ZN
451
Software
4
A
CYS
101
C
CYS
10
4
1_555
A
CYS
104
C
CYS
13
4
1_555
A
CYS
118
C
CYS
27
4
1_555
A
CYS
121
C
CYS
30
4
1_555
A
CYS
137
C
CYS
47
4
1_555
A
CYS
143
C
CYS
53
4
1_555
A
CYS
153
C
CYS
63
4
1_555
A
CYS
156
C
CYS
66
4
1_555
B
CYS
101
D
CYS
10
4
1_555
B
CYS
104
D
CYS
13
4
1_555
B
CYS
118
D
CYS
27
4
1_555
B
CYS
121
D
CYS
30
4
1_555
B
CYS
137
D
CYS
47
4
1_555
B
CYS
143
D
CYS
53
4
1_555
B
CYS
153
D
CYS
63
4
1_555
B
CYS
156
D
CYS
66
4
1_555
1
triclinic
P 1