0.032258
0.000000
0.000000
0.000000
0.025523
0.000000
0.000000
0.000000
0.011973
0.00000
0.00000
0.00000
Binda, C.
Coda, A.
Mattevi, A.
Aliverti, A.
Zanetti, G.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.00
90.00
90.00
31.000
39.180
83.520
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
Fe2 S2
175.820
FE2/S2 (INORGANIC) CLUSTER
non-polymer
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
DK
Acta Crystallogr.,Sect.D
ABCRE6
0766
0907-4449
54
1353
1358
10.1107/S0907444998005137
10089511
Structure of the mutant E92K of [2Fe-2S] ferredoxin I from Spinacia oleracea at 1.7 A resolution.
1998
10.2210/pdb1a70/pdb
pdb_00001a70
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
293
1
MIRRORS
IMAGE PLATE
1996-06
MARRESEARCH
GRAPHITE(002)
M
x-ray
1
1.5418
1.0
1.5418
ROTATING ANODE
RIGAKU RUH2R
10488.470
FERREDOXIN
E92K
1
man
polymer
175.820
FE2/S2 (INORGANIC) CLUSTER
1
syn
non-polymer
18.015
water
81
nat
water
no
no
AAYKVTLVTPTGNVEFQCPDDVYILDAAEEEGIDLPYSCRAGSCSSCAGKLKTGSLNQDDQSFLDDDQIDEGWVLTCAAY
PVSDVTIETHKKEELTA
AAYKVTLVTPTGNVEFQCPDDVYILDAAEEEGIDLPYSCRAGSCSSCAGKLKTGSLNQDDQSFLDDDQIDEGWVLTCAAY
PVSDVTIETHKKEELTA
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
spinach
Spinacia
Escherichia
sample
3562
Spinacia oleracea
562
Escherichia coli
1
1.5
50
7.5
PROTEIN WAS CRYSTALLIZED FROM 2.6M AMMONIUM SULPHATE IN 50MM PHOSPHATE BUFFER, PH 7.5
database_2
software
struct_conn
struct_ref_seq_dif
struct_site
pdbx_initial_refinement_model
repository
Initial release
Version format compliance
Version format compliance
Database references
Derived calculations
Refinement description
Refinement description
1
0
1998-11-25
1
1
2008-03-24
1
2
2011-07-13
1
3
2021-11-03
1
4
2023-08-02
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_software.name
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_ref_seq_dif.details
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
Y
BNL
1998-03-19
REL
REL
FES
FE2/S2 (INORGANIC) CLUSTER
HOH
water
1FRR
PDB ENTRY 1FRR
PDB
experimental model
FES
1602
2
FES
FES
1602
A
HOH
1
3
HOH
HOH
1603
A
HOH
2
3
HOH
HOH
1604
A
HOH
3
3
HOH
HOH
1605
A
HOH
4
3
HOH
HOH
1606
A
HOH
5
3
HOH
HOH
1607
A
HOH
6
3
HOH
HOH
1608
A
HOH
7
3
HOH
HOH
1609
A
HOH
8
3
HOH
HOH
1610
A
HOH
9
3
HOH
HOH
1611
A
HOH
10
3
HOH
HOH
1612
A
HOH
11
3
HOH
HOH
1613
A
HOH
12
3
HOH
HOH
1614
A
HOH
13
3
HOH
HOH
1615
A
HOH
14
3
HOH
HOH
1616
A
HOH
15
3
HOH
HOH
1617
A
HOH
16
3
HOH
HOH
1618
A
HOH
17
3
HOH
HOH
1619
A
HOH
18
3
HOH
HOH
1620
A
HOH
19
3
HOH
HOH
1621
A
HOH
20
3
HOH
HOH
1622
A
HOH
21
3
HOH
HOH
1623
A
HOH
22
3
HOH
HOH
1624
A
HOH
23
3
HOH
HOH
1625
A
HOH
24
3
HOH
HOH
1626
A
HOH
25
3
HOH
HOH
1627
A
HOH
26
3
HOH
HOH
1628
A
HOH
27
3
HOH
HOH
1629
A
HOH
28
3
HOH
HOH
1630
A
HOH
29
3
HOH
HOH
1631
A
HOH
30
3
HOH
HOH
1632
A
HOH
31
3
HOH
HOH
1633
A
HOH
32
3
HOH
HOH
1634
A
HOH
33
3
HOH
HOH
1635
A
HOH
34
3
HOH
HOH
1636
A
HOH
35
3
HOH
HOH
1637
A
HOH
36
3
HOH
HOH
1638
A
HOH
37
3
HOH
HOH
1639
A
HOH
38
3
HOH
HOH
1640
A
HOH
39
3
HOH
HOH
1641
A
HOH
40
3
HOH
HOH
1642
A
HOH
41
3
HOH
HOH
1643
A
HOH
42
3
HOH
HOH
1644
A
HOH
43
3
HOH
HOH
1645
A
HOH
44
3
HOH
HOH
1646
A
HOH
45
3
HOH
HOH
1647
A
HOH
46
3
HOH
HOH
1648
A
HOH
47
3
HOH
HOH
1649
A
HOH
48
3
HOH
HOH
1650
A
HOH
49
3
HOH
HOH
1651
A
HOH
50
3
HOH
HOH
1652
A
HOH
51
3
HOH
HOH
1653
A
HOH
52
3
HOH
HOH
1654
A
HOH
53
3
HOH
HOH
1655
A
HOH
54
3
HOH
HOH
1656
A
HOH
55
3
HOH
HOH
1657
A
HOH
56
3
HOH
HOH
1658
A
HOH
57
3
HOH
HOH
1659
A
HOH
58
3
HOH
HOH
1660
A
HOH
59
3
HOH
HOH
1661
A
HOH
60
3
HOH
HOH
1662
A
HOH
61
3
HOH
HOH
1663
A
HOH
62
3
HOH
HOH
1664
A
HOH
63
3
HOH
HOH
1665
A
HOH
64
3
HOH
HOH
1666
A
HOH
65
3
HOH
HOH
1667
A
HOH
66
3
HOH
HOH
1668
A
HOH
67
3
HOH
HOH
1669
A
HOH
68
3
HOH
HOH
1670
A
HOH
69
3
HOH
HOH
1671
A
HOH
70
3
HOH
HOH
1672
A
HOH
71
3
HOH
HOH
1673
A
HOH
72
3
HOH
HOH
1674
A
HOH
73
3
HOH
HOH
1675
A
HOH
74
3
HOH
HOH
1676
A
HOH
75
3
HOH
HOH
1677
A
HOH
76
3
HOH
HOH
1678
A
HOH
77
3
HOH
HOH
1679
A
HOH
78
3
HOH
HOH
1680
A
HOH
79
3
HOH
HOH
1681
A
HOH
80
3
HOH
HOH
1682
A
HOH
81
3
HOH
HOH
1683
A
ALA
1
n
1
ALA
1
A
ALA
2
n
2
ALA
2
A
TYR
3
n
3
TYR
3
A
LYS
4
n
4
LYS
4
A
VAL
5
n
5
VAL
5
A
THR
6
n
6
THR
6
A
LEU
7
n
7
LEU
7
A
VAL
8
n
8
VAL
8
A
THR
9
n
9
THR
9
A
PRO
10
n
10
PRO
10
A
THR
11
n
11
THR
11
A
GLY
12
n
12
GLY
12
A
ASN
13
n
13
ASN
13
A
VAL
14
n
14
VAL
14
A
GLU
15
n
15
GLU
15
A
PHE
16
n
16
PHE
16
A
GLN
17
n
17
GLN
17
A
CYS
18
n
18
CYS
18
A
PRO
19
n
19
PRO
19
A
ASP
20
n
20
ASP
20
A
ASP
21
n
21
ASP
21
A
VAL
22
n
22
VAL
22
A
TYR
23
n
23
TYR
23
A
ILE
24
n
24
ILE
24
A
LEU
25
n
25
LEU
25
A
ASP
26
n
26
ASP
26
A
ALA
27
n
27
ALA
27
A
ALA
28
n
28
ALA
28
A
GLU
29
n
29
GLU
29
A
GLU
30
n
30
GLU
30
A
GLU
31
n
31
GLU
31
A
GLY
32
n
32
GLY
32
A
ILE
33
n
33
ILE
33
A
ASP
34
n
34
ASP
34
A
LEU
35
n
35
LEU
35
A
PRO
36
n
36
PRO
36
A
TYR
37
n
37
TYR
37
A
SER
38
n
38
SER
38
A
CYS
39
n
39
CYS
39
A
ARG
40
n
40
ARG
40
A
ALA
41
n
41
ALA
41
A
GLY
42
n
42
GLY
42
A
SER
43
n
43
SER
43
A
CYS
44
n
44
CYS
44
A
SER
45
n
45
SER
45
A
SER
46
n
46
SER
46
A
CYS
47
n
47
CYS
47
A
ALA
48
n
48
ALA
48
A
GLY
49
n
49
GLY
49
A
LYS
50
n
50
LYS
50
A
LEU
51
n
51
LEU
51
A
LYS
52
n
52
LYS
52
A
THR
53
n
53
THR
53
A
GLY
54
n
54
GLY
54
A
SER
55
n
55
SER
55
A
LEU
56
n
56
LEU
56
A
ASN
57
n
57
ASN
57
A
GLN
58
n
58
GLN
58
A
ASP
59
n
59
ASP
59
A
ASP
60
n
60
ASP
60
A
GLN
61
n
61
GLN
61
A
SER
62
n
62
SER
62
A
PHE
63
n
63
PHE
63
A
LEU
64
n
64
LEU
64
A
ASP
65
n
65
ASP
65
A
ASP
66
n
66
ASP
66
A
ASP
67
n
67
ASP
67
A
GLN
68
n
68
GLN
68
A
ILE
69
n
69
ILE
69
A
ASP
70
n
70
ASP
70
A
GLU
71
n
71
GLU
71
A
GLY
72
n
72
GLY
72
A
TRP
73
n
73
TRP
73
A
VAL
74
n
74
VAL
74
A
LEU
75
n
75
LEU
75
A
THR
76
n
76
THR
76
A
CYS
77
n
77
CYS
77
A
ALA
78
n
78
ALA
78
A
ALA
79
n
79
ALA
79
A
TYR
80
n
80
TYR
80
A
PRO
81
n
81
PRO
81
A
VAL
82
n
82
VAL
82
A
SER
83
n
83
SER
83
A
ASP
84
n
84
ASP
84
A
VAL
85
n
85
VAL
85
A
THR
86
n
86
THR
86
A
ILE
87
n
87
ILE
87
A
GLU
88
n
88
GLU
88
A
THR
89
n
89
THR
89
A
HIS
90
n
90
HIS
90
A
LYS
91
n
91
LYS
91
A
LYS
92
n
92
LYS
92
A
GLU
93
n
93
GLU
93
A
GLU
94
n
94
GLU
94
A
LEU
95
n
95
LEU
95
A
THR
96
n
96
THR
96
A
ALA
97
n
97
ALA
97
A
0.2010000
0.1960000
0.2590000
1176
10
author_defined_assembly
1
monomeric
A
CYS
39
A
SG
CYS
39
1_555
A
FES
1602
B
FE1
FES
1_555
A
FES
1602
B
S1
FES
1_555
116.8
A
CYS
39
A
SG
CYS
39
1_555
A
FES
1602
B
FE1
FES
1_555
A
FES
1602
B
S2
FES
1_555
100.8
A
FES
1602
B
S1
FES
1_555
A
FES
1602
B
FE1
FES
1_555
A
FES
1602
B
S2
FES
1_555
104.5
A
CYS
39
A
SG
CYS
39
1_555
A
FES
1602
B
FE1
FES
1_555
A
CYS
44
A
SG
CYS
44
1_555
107.2
A
FES
1602
B
S1
FES
1_555
A
FES
1602
B
FE1
FES
1_555
A
CYS
44
A
SG
CYS
44
1_555
108.3
A
FES
1602
B
S2
FES
1_555
A
FES
1602
B
FE1
FES
1_555
A
CYS
44
A
SG
CYS
44
1_555
119.7
A
CYS
47
A
SG
CYS
47
1_555
A
FES
1602
B
FE2
FES
1_555
A
FES
1602
B
S1
FES
1_555
113.0
A
CYS
47
A
SG
CYS
47
1_555
A
FES
1602
B
FE2
FES
1_555
A
FES
1602
B
S2
FES
1_555
109.6
A
FES
1602
B
S1
FES
1_555
A
FES
1602
B
FE2
FES
1_555
A
FES
1602
B
S2
FES
1_555
105.4
A
CYS
47
A
SG
CYS
47
1_555
A
FES
1602
B
FE2
FES
1_555
A
CYS
77
A
SG
CYS
77
1_555
107.1
A
FES
1602
B
S1
FES
1_555
A
FES
1602
B
FE2
FES
1_555
A
CYS
77
A
SG
CYS
77
1_555
122.0
A
FES
1602
B
S2
FES
1_555
A
FES
1602
B
FE2
FES
1_555
A
CYS
77
A
SG
CYS
77
1_555
98.4
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
O
GLY
12
A
O
GLY
12
A
N
THR
9
A
N
THR
9
A
O
THR
6
A
O
THR
6
A
N
VAL
85
A
N
VAL
85
A
O
THR
86
A
O
THR
86
A
N
THR
53
A
N
THR
53
A
O
GLY
49
A
O
GLY
49
A
N
VAL
74
A
N
VAL
74
1
A
CA
ALA
1
WRONG HAND
1
-6.81
0.90
118.30
111.49
A
A
A
CB
CG
OD2
ASP
ASP
ASP
20
20
20
N
1
6.09
0.90
118.30
124.39
A
A
A
CB
CG
OD1
ASP
ASP
ASP
34
34
34
N
1
-5.90
0.90
118.30
112.40
A
A
A
CB
CG
OD2
ASP
ASP
ASP
34
34
34
N
1
-4.73
0.50
120.30
115.57
A
A
A
NE
CZ
NH2
ARG
ARG
ARG
40
40
40
N
1
-5.63
0.90
118.30
112.67
A
A
A
CB
CG
OD2
ASP
ASP
ASP
59
59
59
N
1
5.68
0.90
118.30
123.98
A
A
A
CB
CG
OD1
ASP
ASP
ASP
65
65
65
N
1
12.22
0.90
118.30
130.52
A
A
A
CB
CG
OD1
ASP
ASP
ASP
84
84
84
N
1
-14.60
0.90
118.30
103.70
A
A
A
CB
CG
OD2
ASP
ASP
ASP
84
84
84
N
1
A
SER
38
-141.70
-77.42
0.2000000
0.1820000
0.2010000
0.1900000
1.7
100.0
1090
11755
11755
10.0
97.6
EVERY 10TH REFLECTION
1
TNT BCORREL V1.0
A POSTERIORI
0.0
MOLECULAR REPLACEMENT
PDB ENTRY 1FRR
TNT PROTGEO
BABINET SCALING
150
0.80
1.7
100.0
81
817
4
0
732
0.019
620
70
2.994
855
90
18.50
300
0.00
1
0.021
13
70
0.021
94
240
4.3
620
2.1
0.039
9
125
5.1
1.70
1A70
11755
2
0.0780000
0.1120000
1
10
2.5
97.6
0.2020000
1.7
1.8
2
0.3050000
2.5
68
phasing
AMoRE
refinement
TNT
5D
data reduction
MOSFLM
data scaling
Agrovata
SPINACH FERREDOXIN
1
N
N
2
N
N
3
N
N
A
ILE
24
A
ILE
24
HELX_P
A
GLU
30
A
GLU
30
1
1
7
A
ASP
66
A
ASP
66
HELX_P
A
GLU
71
A
GLU
71
1
2
6
A
THR
76
A
THR
76
HELX_P
A
ALA
78
A
ALA
78
5
3
3
A
LYS
92
A
LYS
92
HELX_P
A
GLU
94
A
GLU
94
5
4
3
metalc
2.318
A
CYS
39
A
SG
CYS
39
1_555
A
FES
1602
B
FE1
FES
1_555
metalc
2.277
A
CYS
44
A
SG
CYS
44
1_555
A
FES
1602
B
FE1
FES
1_555
metalc
2.361
A
CYS
47
A
SG
CYS
47
1_555
A
FES
1602
B
FE2
FES
1_555
metalc
2.269
A
CYS
77
A
SG
CYS
77
1_555
A
FES
1602
B
FE2
FES
1_555
IRON-SULFUR PROTEIN
IRON-SULFUR PROTEIN, PHOTOSYNTHESIS, ELECTRON TRANSPORT
FER1_SPIOL
UNP
1
1
P00221
MAATTTTMMGMATTFVPKPQAPPMMAALPSNTGRSLFGLKTGSRGGRMTMAAYKVTLVTPTGNVEFQCPDDVYILDAAEE
EGIDLPYSCRAGSCSSCAGKLKTGSLNQDDQSFLDDDQIDEGWVLTCAAYPVSDVTIETHKEEELTA
51
147
1A70
1
97
P00221
A
1
1
97
1
GLU
engineered mutation
LYS
92
1A70
A
P00221
UNP
142
92
5
anti-parallel
parallel
anti-parallel
anti-parallel
A
GLY
12
A
GLY
12
A
PRO
19
A
PRO
19
A
ALA
2
A
ALA
2
A
THR
9
A
THR
9
A
VAL
85
A
VAL
85
A
GLU
88
A
GLU
88
A
ALA
48
A
ALA
48
A
THR
53
A
THR
53
A
TRP
73
A
TRP
73
A
LEU
75
A
LEU
75
BINDING SITE FOR RESIDUE FES A 1602
A
FES
1602
Software
8
A
SER
38
A
SER
38
8
1_555
A
CYS
39
A
CYS
39
8
1_555
A
ARG
40
A
ARG
40
8
1_555
A
GLY
42
A
GLY
42
8
1_555
A
SER
43
A
SER
43
8
1_555
A
CYS
44
A
CYS
44
8
1_555
A
CYS
47
A
CYS
47
8
1_555
A
CYS
77
A
CYS
77
8
1_555
19
P 21 21 21