0.007702
0.000000
0.000000
0.000000
0.007702
0.000000
0.000000
0.000000
0.007702
0.00000
0.00000
0.00000
Harrison, D.H.T.
Runquist, J.
Holub, A.
Miziorko, H.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
24
90.00
90.00
90.00
129.830
129.830
129.830
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
O4 S -2
96.063
SULFATE ION
non-polymer
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
N
N
89
S
C
N
90
N
C
N
91
N
O
N
92
N
C
N
93
N
C
N
94
N
C
N
95
N
O
N
96
N
N
N
97
N
O
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
N
N
109
S
C
N
110
N
C
N
111
N
O
N
112
N
C
N
113
N
C
N
114
N
C
N
115
N
O
N
116
N
O
N
117
N
O
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
N
N
128
N
C
N
129
N
C
N
130
N
O
N
131
N
O
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
N
N
138
S
C
N
139
N
C
N
140
N
O
N
141
N
C
Y
142
N
C
Y
143
N
N
Y
144
N
C
Y
145
N
C
Y
146
N
N
N
147
N
O
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
O
N
159
N
H
N
160
N
H
N
161
N
N
N
162
S
C
N
163
N
C
N
164
N
O
N
165
S
C
N
166
N
C
N
167
N
C
N
168
N
C
N
169
N
O
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
N
N
184
S
C
N
185
N
C
N
186
N
O
N
187
N
C
N
188
N
C
N
189
N
C
N
190
N
C
N
191
N
O
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
N
N
206
S
C
N
207
N
C
N
208
N
O
N
209
N
C
N
210
N
C
N
211
N
C
N
212
N
C
N
213
N
N
N
214
N
O
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
N
N
231
S
C
N
232
N
C
N
233
N
O
N
234
N
C
N
235
N
C
N
236
N
S
N
237
N
C
N
238
N
O
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
N
N
251
S
C
N
252
N
C
N
253
N
O
N
254
N
C
Y
255
N
C
Y
256
N
C
Y
257
N
C
Y
258
N
C
Y
259
N
C
Y
260
N
C
N
261
N
O
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
N
N
274
S
C
N
275
N
C
N
276
N
O
N
277
N
C
N
278
N
C
N
279
N
C
N
280
N
O
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
N
N
291
S
C
N
292
N
C
N
293
N
O
N
294
N
C
N
295
N
O
N
296
N
O
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
S
N
305
N
O
N
306
N
O
N
307
N
O
N
308
N
O
N
309
N
N
N
310
S
C
N
311
N
C
N
312
N
O
N
313
R
C
N
314
N
O
N
315
N
C
N
316
N
O
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
H
N
322
N
H
N
323
N
H
N
324
N
H
N
325
N
H
N
326
N
N
N
327
S
C
N
328
N
C
N
329
N
O
N
330
N
C
Y
331
N
C
Y
332
N
C
Y
333
N
C
Y
334
N
N
Y
335
N
C
Y
336
N
C
Y
337
N
C
Y
338
N
C
Y
339
N
C
N
340
N
O
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
H
N
349
N
H
N
350
N
H
N
351
N
H
N
352
N
H
N
353
N
N
N
354
S
C
N
355
N
C
N
356
N
O
N
357
N
C
Y
358
N
C
Y
359
N
C
Y
360
N
C
Y
361
N
C
Y
362
N
C
Y
363
N
C
N
364
N
O
N
365
N
O
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
H
N
373
N
H
N
374
N
H
N
375
N
H
N
376
N
H
N
377
N
N
N
378
S
C
N
379
N
C
N
380
N
O
N
381
N
C
N
382
N
C
N
383
N
C
N
384
N
O
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
H
N
391
N
H
N
392
N
H
N
393
N
H
N
394
N
H
N
395
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
doub
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
doub
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
doub
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
doub
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
doub
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
Y
140
N
sing
Y
141
N
doub
Y
142
N
doub
N
143
N
sing
Y
144
N
sing
N
145
N
sing
Y
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
doub
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
doub
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
doub
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
doub
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
doub
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
Y
248
N
doub
Y
249
N
sing
Y
250
N
sing
N
251
N
sing
Y
252
N
doub
N
253
N
sing
Y
254
N
doub
N
255
N
sing
Y
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
doub
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
doub
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
doub
N
291
N
doub
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
doub
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
doub
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
Y
321
N
doub
Y
322
N
sing
Y
323
N
sing
N
324
N
sing
Y
325
N
doub
Y
326
N
sing
Y
327
N
sing
N
328
N
sing
Y
329
N
sing
Y
330
N
doub
N
331
N
sing
Y
332
N
doub
N
333
N
sing
Y
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
doub
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
Y
349
N
doub
Y
350
N
sing
Y
351
N
sing
N
352
N
sing
Y
353
N
doub
N
354
N
sing
Y
355
N
doub
N
356
N
sing
Y
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
doub
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
US
Biochemistry
BICHAW
0033
0006-2960
37
5074
5085
10.1021/bi972805y
9548738
The crystal structure of phosphoribulokinase from Rhodobacter sphaeroides reveals a fold similar to that of adenylate kinase.
1998
US
Biochemistry
BICHAW
0033
0006-2960
37
1221
Functional Evaluation of Invariant Arginines Situated in the Mobile Lid Domain of Phosphoribulokinase
1998
10.2210/pdb1a7j/pdb
pdb_00001a7j
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
277
1
IMAGE PLATE
1996-08
RIGAKU
GRAPHITE(002)
M
x-ray
1
1.5418
1.0
1.5418
ROTATING ANODE
RIGAKU RUH2R
32709.971
PHOSPHORIBULOKINASE
2.7.1.19
1
man
polymer
96.063
SULFATE ION
1
syn
non-polymer
18.015
water
34
nat
water
no
no
MSKKHPIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFHRFNRADMKAELDRRYAAGDATFSHFSYEANELKEL
ERVFREYGETGQGRTRTYVHDDAEAARTGVAPGNFTDWRDFDSDSHLLFYEGLHGAVVNSEVNIAGLADLKIGVVPVINL
EWIQKIHRDRATRGYTTEAVTDVILRRMHAYVHCIVPQFSQTDINFQRVPVVDTSNPFIARWIPTADESVVVIRFRNPRG
IDFPYLTSMIHGSWMSRANSIVVPGNKLDLAMQLILTPLIDRVVRESKVA
MSKKHPIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFHRFNRADMKAELDRRYAAGDATFSHFSYEANELKEL
ERVFREYGETGQGRTRTYVHDDAEAARTGVAPGNFTDWRDFDSDSHLLFYEGLHGAVVNSEVNIAGLADLKIGVVPVINL
EWIQKIHRDRATRGYTTEAVTDVILRRMHAYVHCIVPQFSQTDINFQRVPVVDTSNPFIARWIPTADESVVVIRFRNPRG
IDFPYLTSMIHGSWMSRANSIVVPGNKLDLAMQLILTPLIDRVVRESKVA
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Rhodobacter
Escherichia
Escherichia coli
sample
BL21
PRKA
1063
Rhodobacter sphaeroides
469008
Escherichia coli BL21(DE3)
BL21 (DE3)
PETBPRKWT
1
2.79
55.86
5.0
PROTEIN WAS CRYSTALLIZED FROM AMMONIUM PHOSPHATE, pH 5.0
chem_comp_atom
chem_comp_bond
database_2
struct_site
repository
Initial release
Version format compliance
Derived calculations
Version format compliance
Data collection
Database references
Derived calculations
1
0
1998-06-17
1
1
2008-03-24
1
2
2011-07-13
1
3
2024-02-07
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
Y
BNL
1998-03-16
REL
REL
SO4
SULFATE ION
HOH
water
SO4
401
2
SO4
SO4
401
A
HOH
303
3
HOH
HOH
303
A
HOH
304
3
HOH
HOH
304
A
HOH
305
3
HOH
HOH
305
A
HOH
306
3
HOH
HOH
306
A
HOH
307
3
HOH
HOH
307
A
HOH
308
3
HOH
HOH
308
A
HOH
309
3
HOH
HOH
309
A
HOH
310
3
HOH
HOH
310
A
HOH
311
3
HOH
HOH
311
A
HOH
312
3
HOH
HOH
312
A
HOH
313
3
HOH
HOH
313
A
HOH
314
3
HOH
HOH
314
A
HOH
315
3
HOH
HOH
315
A
HOH
316
3
HOH
HOH
316
A
HOH
317
3
HOH
HOH
317
A
HOH
320
3
HOH
HOH
320
A
HOH
321
3
HOH
HOH
321
A
HOH
323
3
HOH
HOH
323
A
HOH
324
3
HOH
HOH
324
A
HOH
327
3
HOH
HOH
327
A
HOH
328
3
HOH
HOH
328
A
HOH
329
3
HOH
HOH
329
A
HOH
330
3
HOH
HOH
330
A
HOH
331
3
HOH
HOH
331
A
HOH
332
3
HOH
HOH
332
A
HOH
333
3
HOH
HOH
333
A
HOH
334
3
HOH
HOH
334
A
HOH
335
3
HOH
HOH
335
A
HOH
336
3
HOH
HOH
336
A
HOH
337
3
HOH
HOH
337
A
HOH
339
3
HOH
HOH
339
A
HOH
340
3
HOH
HOH
340
A
HOH
342
3
HOH
HOH
342
A
HOH
343
3
HOH
HOH
343
A
n
1
1
A
SER
2
n
2
SER
2
A
LYS
3
n
3
LYS
3
A
LYS
4
n
4
LYS
4
A
HIS
5
n
5
HIS
5
A
PRO
6
n
6
PRO
6
A
ILE
7
n
7
ILE
7
A
ILE
8
n
8
ILE
8
A
SER
9
n
9
SER
9
A
VAL
10
n
10
VAL
10
A
THR
11
n
11
THR
11
A
GLY
12
n
12
GLY
12
A
SER
13
n
13
SER
13
A
SER
14
n
14
SER
14
A
n
15
15
A
n
16
16
A
n
17
17
A
THR
18
n
18
THR
18
A
SER
19
n
19
SER
19
A
THR
20
n
20
THR
20
A
VAL
21
n
21
VAL
21
A
LYS
22
n
22
LYS
22
A
HIS
23
n
23
HIS
23
A
THR
24
n
24
THR
24
A
PHE
25
n
25
PHE
25
A
ASP
26
n
26
ASP
26
A
GLN
27
n
27
GLN
27
A
ILE
28
n
28
ILE
28
A
PHE
29
n
29
PHE
29
A
ARG
30
n
30
ARG
30
A
ARG
31
n
31
ARG
31
A
GLU
32
n
32
GLU
32
A
GLY
33
n
33
GLY
33
A
VAL
34
n
34
VAL
34
A
LYS
35
n
35
LYS
35
A
ALA
36
n
36
ALA
36
A
VAL
37
n
37
VAL
37
A
SER
38
n
38
SER
38
A
ILE
39
n
39
ILE
39
A
GLU
40
n
40
GLU
40
A
GLY
41
n
41
GLY
41
A
ASP
42
n
42
ASP
42
A
ALA
43
n
43
ALA
43
A
PHE
44
n
44
PHE
44
A
HIS
45
n
45
HIS
45
A
ARG
46
n
46
ARG
46
A
PHE
47
n
47
PHE
47
A
ASN
48
n
48
ASN
48
A
ARG
49
n
49
ARG
49
A
ALA
50
n
50
ALA
50
A
ASP
51
n
51
ASP
51
A
MET
52
n
52
MET
52
A
LYS
53
n
53
LYS
53
A
ALA
54
n
54
ALA
54
A
GLU
55
n
55
GLU
55
A
LEU
56
n
56
LEU
56
A
ASP
57
n
57
ASP
57
A
ARG
58
n
58
ARG
58
A
ARG
59
n
59
ARG
59
A
TYR
60
n
60
TYR
60
A
ALA
61
n
61
ALA
61
A
ALA
62
n
62
ALA
62
A
GLY
63
n
63
GLY
63
A
ASP
64
n
64
ASP
64
A
ALA
65
n
65
ALA
65
A
THR
66
n
66
THR
66
A
PHE
67
n
67
PHE
67
A
SER
68
n
68
SER
68
A
HIS
69
n
69
HIS
69
A
PHE
70
n
70
PHE
70
A
SER
71
n
71
SER
71
A
TYR
72
n
72
TYR
72
A
GLU
73
n
73
GLU
73
A
ALA
74
n
74
ALA
74
A
ASN
75
n
75
ASN
75
A
GLU
76
n
76
GLU
76
A
LEU
77
n
77
LEU
77
A
LYS
78
n
78
LYS
78
A
GLU
79
n
79
GLU
79
A
LEU
80
n
80
LEU
80
A
GLU
81
n
81
GLU
81
A
ARG
82
n
82
ARG
82
A
VAL
83
n
83
VAL
83
A
PHE
84
n
84
PHE
84
A
ARG
85
n
85
ARG
85
A
GLU
86
n
86
GLU
86
A
TYR
87
n
87
TYR
87
A
GLY
88
n
88
GLY
88
A
GLU
89
n
89
GLU
89
A
THR
90
n
90
THR
90
A
GLY
91
n
91
GLY
91
A
GLN
92
n
92
GLN
92
A
GLY
93
n
93
GLY
93
A
ARG
94
n
94
ARG
94
A
THR
95
n
95
THR
95
A
ARG
96
n
96
ARG
96
A
THR
97
n
97
THR
97
A
TYR
98
n
98
TYR
98
A
VAL
99
n
99
VAL
99
A
n
100
100
A
n
101
101
A
n
102
102
A
n
103
103
A
n
104
104
A
n
105
105
A
ALA
106
n
106
ALA
106
A
ARG
107
n
107
ARG
107
A
THR
108
n
108
THR
108
A
GLY
109
n
109
GLY
109
A
VAL
110
n
110
VAL
110
A
ALA
111
n
111
ALA
111
A
PRO
112
n
112
PRO
112
A
GLY
113
n
113
GLY
113
A
ASN
114
n
114
ASN
114
A
PHE
115
n
115
PHE
115
A
THR
116
n
116
THR
116
A
ASP
117
n
117
ASP
117
A
TRP
118
n
118
TRP
118
A
ARG
119
n
119
ARG
119
A
ASP
120
n
120
ASP
120
A
PHE
121
n
121
PHE
121
A
ASP
122
n
122
ASP
122
A
SER
123
n
123
SER
123
A
ASP
124
n
124
ASP
124
A
SER
125
n
125
SER
125
A
HIS
126
n
126
HIS
126
A
LEU
127
n
127
LEU
127
A
LEU
128
n
128
LEU
128
A
PHE
129
n
129
PHE
129
A
TYR
130
n
130
TYR
130
A
GLU
131
n
131
GLU
131
A
GLY
132
n
132
GLY
132
A
LEU
133
n
133
LEU
133
A
HIS
134
n
134
HIS
134
A
GLY
135
n
135
GLY
135
A
ALA
136
n
136
ALA
136
A
VAL
137
n
137
VAL
137
A
VAL
138
n
138
VAL
138
A
ASN
139
n
139
ASN
139
A
SER
140
n
140
SER
140
A
GLU
141
n
141
GLU
141
A
VAL
142
n
142
VAL
142
A
ASN
143
n
143
ASN
143
A
ILE
144
n
144
ILE
144
A
ALA
145
n
145
ALA
145
A
GLY
146
n
146
GLY
146
A
LEU
147
n
147
LEU
147
A
ALA
148
n
148
ALA
148
A
ASP
149
n
149
ASP
149
A
LEU
150
n
150
LEU
150
A
LYS
151
n
151
LYS
151
A
ILE
152
n
152
ILE
152
A
GLY
153
n
153
GLY
153
A
VAL
154
n
154
VAL
154
A
VAL
155
n
155
VAL
155
A
PRO
156
n
156
PRO
156
A
VAL
157
n
157
VAL
157
A
ILE
158
n
158
ILE
158
A
ASN
159
n
159
ASN
159
A
LEU
160
n
160
LEU
160
A
GLU
161
n
161
GLU
161
A
TRP
162
n
162
TRP
162
A
ILE
163
n
163
ILE
163
A
GLN
164
n
164
GLN
164
A
LYS
165
n
165
LYS
165
A
ILE
166
n
166
ILE
166
A
HIS
167
n
167
HIS
167
A
ARG
168
n
168
ARG
168
A
ASP
169
n
169
ASP
169
A
ARG
170
n
170
ARG
170
A
ALA
171
n
171
ALA
171
A
THR
172
n
172
THR
172
A
ARG
173
n
173
ARG
173
A
GLY
174
n
174
GLY
174
A
TYR
175
n
175
TYR
175
A
THR
176
n
176
THR
176
A
THR
177
n
177
THR
177
A
GLU
178
n
178
GLU
178
A
ALA
179
n
179
ALA
179
A
VAL
180
n
180
VAL
180
A
THR
181
n
181
THR
181
A
ASP
182
n
182
ASP
182
A
VAL
183
n
183
VAL
183
A
ILE
184
n
184
ILE
184
A
LEU
185
n
185
LEU
185
A
ARG
186
n
186
ARG
186
A
ARG
187
n
187
ARG
187
A
MET
188
n
188
MET
188
A
HIS
189
n
189
HIS
189
A
ALA
190
n
190
ALA
190
A
TYR
191
n
191
TYR
191
A
VAL
192
n
192
VAL
192
A
HIS
193
n
193
HIS
193
A
CYS
194
n
194
CYS
194
A
ILE
195
n
195
ILE
195
A
VAL
196
n
196
VAL
196
A
PRO
197
n
197
PRO
197
A
GLN
198
n
198
GLN
198
A
PHE
199
n
199
PHE
199
A
SER
200
n
200
SER
200
A
GLN
201
n
201
GLN
201
A
THR
202
n
202
THR
202
A
ASP
203
n
203
ASP
203
A
ILE
204
n
204
ILE
204
A
ASN
205
n
205
ASN
205
A
PHE
206
n
206
PHE
206
A
GLN
207
n
207
GLN
207
A
ARG
208
n
208
ARG
208
A
VAL
209
n
209
VAL
209
A
PRO
210
n
210
PRO
210
A
VAL
211
n
211
VAL
211
A
VAL
212
n
212
VAL
212
A
ASP
213
n
213
ASP
213
A
THR
214
n
214
THR
214
A
SER
215
n
215
SER
215
A
ASN
216
n
216
ASN
216
A
PRO
217
n
217
PRO
217
A
PHE
218
n
218
PHE
218
A
ILE
219
n
219
ILE
219
A
ALA
220
n
220
ALA
220
A
ARG
221
n
221
ARG
221
A
TRP
222
n
222
TRP
222
A
ILE
223
n
223
ILE
223
A
PRO
224
n
224
PRO
224
A
THR
225
n
225
THR
225
A
ALA
226
n
226
ALA
226
A
ASP
227
n
227
ASP
227
A
GLU
228
n
228
GLU
228
A
SER
229
n
229
SER
229
A
VAL
230
n
230
VAL
230
A
VAL
231
n
231
VAL
231
A
VAL
232
n
232
VAL
232
A
ILE
233
n
233
ILE
233
A
ARG
234
n
234
ARG
234
A
PHE
235
n
235
PHE
235
A
ARG
236
n
236
ARG
236
A
ASN
237
n
237
ASN
237
A
PRO
238
n
238
PRO
238
A
ARG
239
n
239
ARG
239
A
GLY
240
n
240
GLY
240
A
ILE
241
n
241
ILE
241
A
ASP
242
n
242
ASP
242
A
PHE
243
n
243
PHE
243
A
PRO
244
n
244
PRO
244
A
TYR
245
n
245
TYR
245
A
LEU
246
n
246
LEU
246
A
THR
247
n
247
THR
247
A
SER
248
n
248
SER
248
A
MET
249
n
249
MET
249
A
ILE
250
n
250
ILE
250
A
HIS
251
n
251
HIS
251
A
GLY
252
n
252
GLY
252
A
SER
253
n
253
SER
253
A
TRP
254
n
254
TRP
254
A
MET
255
n
255
MET
255
A
SER
256
n
256
SER
256
A
ARG
257
n
257
ARG
257
A
ALA
258
n
258
ALA
258
A
ASN
259
n
259
ASN
259
A
SER
260
n
260
SER
260
A
ILE
261
n
261
ILE
261
A
VAL
262
n
262
VAL
262
A
VAL
263
n
263
VAL
263
A
PRO
264
n
264
PRO
264
A
GLY
265
n
265
GLY
265
A
ASN
266
n
266
ASN
266
A
LYS
267
n
267
LYS
267
A
LEU
268
n
268
LEU
268
A
ASP
269
n
269
ASP
269
A
LEU
270
n
270
LEU
270
A
ALA
271
n
271
ALA
271
A
MET
272
n
272
MET
272
A
GLN
273
n
273
GLN
273
A
LEU
274
n
274
LEU
274
A
ILE
275
n
275
ILE
275
A
LEU
276
n
276
LEU
276
A
THR
277
n
277
THR
277
A
PRO
278
n
278
PRO
278
A
LEU
279
n
279
LEU
279
A
ILE
280
n
280
ILE
280
A
ASP
281
n
281
ASP
281
A
ARG
282
n
282
ARG
282
A
VAL
283
n
283
VAL
283
A
VAL
284
n
284
VAL
284
A
ARG
285
n
285
ARG
285
A
GLU
286
n
286
GLU
286
A
SER
287
n
287
SER
287
A
LYS
288
n
288
LYS
288
A
VAL
289
n
289
VAL
289
A
n
290
290
A
author_defined_assembly
1
monomeric
software_defined_assembly
PISA
8
octameric
software_defined_assembly
PQS
2
dimeric
22920
-260
93510
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
2_565
-x,-y+1,z
crystal symmetry operation
0.0000000000
129.8300000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
3_556
-x,y,-z+1
crystal symmetry operation
0.0000000000
0.0000000000
129.8300000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
4_566
x,-y+1,-z+1
crystal symmetry operation
0.0000000000
129.8300000000
129.8300000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
-1.0000000000
0.0000000000
17_556
x,z,-y+1
crystal symmetry operation
0.0000000000
0.0000000000
129.8300000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
1.0000000000
0.0000000000
18_555
-x,z,y
crystal symmetry operation
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
-1.0000000000
0.0000000000
19_566
-x,-z+1,-y+1
crystal symmetry operation
0.0000000000
129.8300000000
129.8300000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
1.0000000000
0.0000000000
20_565
x,-z+1,y
crystal symmetry operation
0.0000000000
129.8300000000
0.0000000000
A
O
TRP
254
A
O
TRP
254
A
N
VAL
262
A
N
VAL
262
A
O
ILE
261
A
O
ILE
261
A
N
ILE
233
A
N
ILE
233
A
O
VAL
230
A
O
VAL
230
A
N
VAL
209
A
N
VAL
209
A
O
ILE
204
A
O
ILE
204
A
N
GLY
153
A
N
GLY
153
A
O
LEU
150
A
O
LEU
150
A
N
SER
9
A
N
SER
9
A
O
PRO
6
A
O
PRO
6
A
N
LEU
128
A
N
LEU
128
A
O
LEU
127
A
O
LEU
127
A
N
VAL
37
A
N
VAL
37
1
A
OG
SER
2
A
OG
SER
2
1
Y
1
A
CG
LYS
4
A
CG
LYS
4
1
Y
1
A
CD
LYS
4
A
CD
LYS
4
1
Y
1
A
CE
LYS
4
A
CE
LYS
4
1
Y
1
A
NZ
LYS
4
A
NZ
LYS
4
1
Y
1
A
CG
TYR
60
A
CG
TYR
60
1
Y
1
A
CD1
TYR
60
A
CD1
TYR
60
1
Y
1
A
CD2
TYR
60
A
CD2
TYR
60
1
Y
1
A
CE1
TYR
60
A
CE1
TYR
60
1
Y
1
A
CE2
TYR
60
A
CE2
TYR
60
1
Y
1
A
CZ
TYR
60
A
CZ
TYR
60
1
Y
1
A
OH
TYR
60
A
OH
TYR
60
1
Y
1
A
CG
LYS
78
A
CG
LYS
78
1
Y
1
A
CD
LYS
78
A
CD
LYS
78
1
Y
1
A
CE
LYS
78
A
CE
LYS
78
1
Y
1
A
NZ
LYS
78
A
NZ
LYS
78
1
Y
1
A
CG
ARG
82
A
CG
ARG
82
1
Y
1
A
CD
ARG
82
A
CD
ARG
82
1
Y
1
A
NE
ARG
82
A
NE
ARG
82
1
Y
1
A
CZ
ARG
82
A
CZ
ARG
82
1
Y
1
A
NH1
ARG
82
A
NH1
ARG
82
1
Y
1
A
NH2
ARG
82
A
NH2
ARG
82
1
Y
1
A
CG
ASP
117
A
CG
ASP
117
1
Y
1
A
OD1
ASP
117
A
OD1
ASP
117
1
Y
1
A
OD2
ASP
117
A
OD2
ASP
117
1
Y
1
A
CG
ASP
124
A
CG
ASP
124
1
Y
1
A
OD1
ASP
124
A
OD1
ASP
124
1
Y
1
A
OD2
ASP
124
A
OD2
ASP
124
1
Y
1
A
OG1
THR
172
A
OG1
THR
172
1
Y
1
A
CG2
THR
172
A
CG2
THR
172
1
Y
1
A
CG
ARG
173
A
CG
ARG
173
1
Y
1
A
CD
ARG
173
A
CD
ARG
173
1
Y
1
A
NE
ARG
173
A
NE
ARG
173
1
Y
1
A
CZ
ARG
173
A
CZ
ARG
173
1
Y
1
A
NH1
ARG
173
A
NH1
ARG
173
1
Y
1
A
NH2
ARG
173
A
NH2
ARG
173
1
Y
1
A
CG
TYR
175
A
CG
TYR
175
1
Y
1
A
CD1
TYR
175
A
CD1
TYR
175
1
Y
1
A
CD2
TYR
175
A
CD2
TYR
175
1
Y
1
A
CE1
TYR
175
A
CE1
TYR
175
1
Y
1
A
CE2
TYR
175
A
CE2
TYR
175
1
Y
1
A
CZ
TYR
175
A
CZ
TYR
175
1
Y
1
A
OH
TYR
175
A
OH
TYR
175
1
Y
1
A
CG
LYS
288
A
CG
LYS
288
1
Y
1
A
CD
LYS
288
A
CD
LYS
288
1
Y
1
A
CE
LYS
288
A
CE
LYS
288
1
Y
1
A
NZ
LYS
288
A
NZ
LYS
288
1
Y
1
A
MET
1
A
MET
1
1
Y
1
A
GLY
15
A
GLY
15
1
Y
1
A
ALA
16
A
ALA
16
1
Y
1
A
GLY
17
A
GLY
17
1
Y
1
A
HIS
100
A
HIS
100
1
Y
1
A
ASP
101
A
ASP
101
1
Y
1
A
ASP
102
A
ASP
102
1
Y
1
A
ALA
103
A
ALA
103
1
Y
1
A
GLU
104
A
GLU
104
1
Y
1
A
ALA
105
A
ALA
105
1
Y
1
A
ALA
290
A
ALA
290
1
Y
1
A
A
THR
GLY
108
109
-146.64
1
A
A
ALA
PRO
111
112
146.85
1
A
ARG
59
0.073
SIDE CHAIN
1
A
ARG
119
0.125
SIDE CHAIN
1
A
ARG
236
0.078
SIDE CHAIN
1
A
HIS
5
-156.57
61.21
1
A
SER
19
175.97
30.39
1
A
ALA
65
-93.70
52.23
1
A
TYR
98
-144.41
-102.40
1
A
ARG
107
-10.36
104.64
1
A
THR
108
-144.92
10.65
1
A
VAL
110
70.76
-101.20
1
A
ALA
111
64.82
108.48
1
A
PRO
112
-36.59
113.76
1
A
THR
116
-59.16
-177.43
1
A
ASP
122
-48.05
173.80
1
A
ALA
136
-147.22
27.10
1
A
THR
172
178.53
87.12
1
A
ARG
173
-79.78
-94.50
1
A
THR
177
72.44
-10.97
1
A
PRO
238
-93.22
39.66
PARHCSDX.PRO
TOPHCSDX.PRO
0.284
0.213
0.213
2.5
15.
532
10828
5.0
80.1
RANDOM
1000000.
0.001
1
THROUGHOUT
2.
MULTIPLE ISOMORPHOUS REPLACEMENT
2.5
15.
34
2226
5
0
2187
0.013
1.337
27.64
2.292
0.298
0.298
2.61
45
916
8
5.
58.9
2.5
30.
1A7J
10956
2.
0.062
1
4.0
80.6
data reduction
DENZO
data scaling
SCALEPACK
model building
X-PLOR
3.1
refinement
X-PLOR
3.1
phasing
X-PLOR
3.1
PHOSPHORIBULOKINASE FROM RHODOBACTER SPHEROIDES
1
N
N
2
N
N
3
N
N
A
THR
20
A
THR
20
HELX_P
A
ARG
31
A
ARG
31
1
1
12
A
GLY
41
A
GLY
41
HELX_P
A
PHE
44
A
PHE
44
5
2
4
A
ARG
49
A
ARG
49
HELX_P
A
ALA
62
A
ALA
62
1
3
14
A
TYR
72
A
TYR
72
HELX_P
A
ALA
74
A
ALA
74
5
4
3
A
LEU
77
A
LEU
77
HELX_P
A
THR
90
A
THR
90
1
5
14
A
ALA
145
A
ALA
145
HELX_P
A
LEU
147
A
LEU
147
5
6
3
A
ILE
158
A
ILE
158
HELX_P
A
ASP
169
A
ASP
169
1
7
12
A
VAL
180
A
VAL
180
HELX_P
A
CYS
194
A
CYS
194
1
8
15
A
VAL
196
A
VAL
196
HELX_P
A
SER
200
A
SER
200
5
9
5
A
PRO
217
A
PRO
217
HELX_P
A
ILE
219
A
ILE
219
5
10
3
A
ALA
226
A
ALA
226
HELX_P
A
GLU
228
A
GLU
228
5
11
3
A
PHE
243
A
PHE
243
HELX_P
A
MET
249
A
MET
249
1
12
7
A
GLY
265
A
GLY
265
HELX_P
A
VAL
284
A
VAL
284
5
13
20
TRANSFERASE
TRANSFERASE, KINASE, CALVIN CYCLE
KPPR1_RHOSH
UNP
1
1
P12033
MSKKHPIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFHRFNRADMKAELDRRYAAGDATFSHFSYEANELKEL
ERVFREYGETGQGRTRTYVHDDAEAARTGVAPGNFTDWRDFDSDSHLLFYEGLHGAVVNSEVNIAGLADLKIGVVPVINL
EWIQKIHRDRATRGYTTEAVTDVILRRMHAYVHCIVPQFSQTDINFQRVPVVDTSNPFIARWIPTADESVVVIRFRNPRG
IDFPYLTSMIHGSWMSRANSIVVPGNKLDLAMQLILTPLIDRVVRESKVA
1
290
1A7J
1
290
P12033
A
1
1
290
8
anti-parallel
anti-parallel
anti-parallel
parallel
parallel
parallel
parallel
A
TRP
254
A
TRP
254
A
ARG
257
A
ARG
257
A
SER
260
A
SER
260
A
PRO
264
A
PRO
264
A
SER
229
A
SER
229
A
PHE
235
A
PHE
235
A
ILE
204
A
ILE
204
A
PRO
210
A
PRO
210
A
LEU
150
A
LEU
150
A
PRO
156
A
PRO
156
A
PRO
6
A
PRO
6
A
THR
11
A
THR
11
A
LEU
127
A
LEU
127
A
GLY
132
A
GLY
132
A
ALA
36
A
ALA
36
A
GLU
40
A
GLU
40
CATALYTIC SITE
Unknown
5
BINDING SITE FOR RESIDUE SO4 A 401
A
SO4
401
Software
4
A
ASP
42
A
ASP
42
5
1_555
A
ASP
169
A
ASP
169
5
1_555
A
LYS
165
A
LYS
165
5
1_555
A
ARG
187
A
ARG
187
5
1_555
A
SO4
401
B
SO4
5
1_555
A
HIS
69
A
HIS
69
4
1_555
A
LYS
165
A
LYS
165
4
1_555
A
ARG
186
A
ARG
186
4
1_555
A
ARG
187
A
ARG
187
4
1_555
207
P 4 3 2