0.011089 0.000000 0.000000 0.000000 0.011089 0.000000 0.000000 0.000000 0.017659 0.00000 0.00000 0.00000 Marks, C. Henrick, K. Winter, G. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 8 90.00 90.00 90.00 90.179 90.179 56.627 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking To be Published 0353 X-Ray Structures of D1.3 Fv Mutants US Proc.Natl.Acad.Sci.USA PNASA6 0040 0027-8424 91 1089 Bound Water Molecules and Conformational Stabilization Help Mediate an Antigen-Antibody Association 1994 UK Nature NATUAS 0006 0028-0836 347 483 Small Rearrangements in Structures of Fv and Fab Fragments of Antibody D1.3 On Antigen Binding 1990 10.2210/pdb1a7n/pdb pdb_00001a7n 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 269 1 IMAGE PLATE 1992-06 MARRESEARCH M x-ray 1 1.5418 1.0 1.5418 11686.950 IGG1-KAPPA D1.3 FV (LIGHT CHAIN) FV FRAGMENT E81D 1 man polymer 12843.249 IGG1-KAPPA D1.3 FV (HEAVY CHAIN) FV FRAGMENT L312V 1 man polymer 18.015 water 192 nat water no no DIVLTQSPASLSASVGETVTITCRASGNIHNYLAWYQQKQGKSPQLLVYYTTTLADGVPSRFSGSGSGTQYSLKINSLQP DDFGSYYCQHFWSTPRTFGGGTKLEIK DIVLTQSPASLSASVGETVTITCRASGNIHNYLAWYQQKQGKSPQLLVYYTTTLADGVPSRFSGSGSGTQYSLKINSLQP DDFGSYYCQHFWSTPRTFGGGTKLEIK L polypeptide(L) no no QVQLQESGPGLVAPSQSLSITCTVSGFSLTGYGVNWVRQPPGKGLEWLGMIWGDGNTDYNSALKSRLSISKDNSKSQVFL KMNSLHTDDTARYYCARERDYRLDYWGQGTTVTVSS QVQLQESGPGLVAPSQSLSITCTVSGFSLTGYGVNWVRQPPGKGLEWLGMIWGDGNTDYNSALKSRLSISKDNSKSQVFL KMNSLHTDDTARYYCARERDYRLDYWGQGTTVTVSS H polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n house mouse Mus Escherichia sample 10090 Mus musculus CHAIN L, E81D, CHAIN H, L312V 562 Escherichia coli house mouse Mus Escherichia sample 10090 Mus musculus CHAIN L, E81D, CHAIN H, L312V 562 Escherichia coli 1 2.35 39.7 database_2 pdbx_initial_refinement_model software struct_ref_seq_dif repository Initial release Version format compliance Version format compliance Database references Refinement description 1 0 1998-04-29 1 1 2008-03-24 1 2 2011-07-13 1 3 2023-08-02 _database_2.pdbx_DOI _database_2.pdbx_database_accession _software.name _struct_ref_seq_dif.details Y BNL 1998-03-16 REL REL HOH water THE ANTIBODY IS SECRETED INTO PERIPLASMIC SPACE. VH AND VL DOMAINS ARE COVALENTLY LINKED AND THEY ASSOCIATE SPONTANEOUSLY. CHAIN IDENTIFIER *L* STANDS FOR LIGHT-CHAIN RESIDUES, *H* FOR HEAVY-CHAIN RESIDUES. THE NUMBERING SYSTEM USED IN THIS ENTRY IS SEQUENTIAL, FROM 1 - 107 FOR THE LIGHT CHAIN AND FROM 201 - 316 FOR THE HEAVY CHAIN. 1VFA PDB ENTRY 1VFA PDB experimental model HOH 402 3 HOH HOH 402 L HOH 403 3 HOH HOH 403 L HOH 405 3 HOH HOH 405 L HOH 407 3 HOH HOH 407 L HOH 409 3 HOH HOH 409 L HOH 411 3 HOH HOH 411 L HOH 413 3 HOH HOH 413 L HOH 415 3 HOH HOH 415 L HOH 416 3 HOH HOH 416 L HOH 418 3 HOH HOH 418 L HOH 419 3 HOH HOH 419 L HOH 421 3 HOH HOH 421 L HOH 427 3 HOH HOH 427 L HOH 428 3 HOH HOH 428 L HOH 430 3 HOH HOH 430 L HOH 432 3 HOH HOH 432 L HOH 434 3 HOH HOH 434 L HOH 435 3 HOH HOH 435 L HOH 437 3 HOH HOH 437 L HOH 440 3 HOH HOH 440 L HOH 442 3 HOH HOH 442 L HOH 443 3 HOH HOH 443 L HOH 445 3 HOH HOH 445 L HOH 447 3 HOH HOH 447 L HOH 448 3 HOH HOH 448 L HOH 451 3 HOH HOH 451 L HOH 452 3 HOH HOH 452 L HOH 456 3 HOH HOH 456 L HOH 457 3 HOH HOH 457 L HOH 459 3 HOH HOH 459 L HOH 462 3 HOH HOH 462 L HOH 464 3 HOH HOH 464 L HOH 465 3 HOH HOH 465 L HOH 466 3 HOH HOH 466 L HOH 472 3 HOH HOH 472 L HOH 473 3 HOH HOH 473 L HOH 474 3 HOH HOH 474 L HOH 479 3 HOH HOH 479 L HOH 482 3 HOH HOH 482 L HOH 484 3 HOH HOH 484 L HOH 486 3 HOH HOH 486 L HOH 489 3 HOH HOH 489 L HOH 492 3 HOH HOH 492 L HOH 493 3 HOH HOH 493 L HOH 496 3 HOH HOH 496 L HOH 499 3 HOH HOH 499 L HOH 501 3 HOH HOH 501 L HOH 506 3 HOH HOH 506 L HOH 508 3 HOH HOH 508 L HOH 509 3 HOH HOH 509 L HOH 510 3 HOH HOH 510 L HOH 511 3 HOH HOH 511 L HOH 513 3 HOH HOH 513 L HOH 515 3 HOH HOH 515 L HOH 517 3 HOH HOH 517 L HOH 520 3 HOH HOH 520 L HOH 521 3 HOH HOH 521 L HOH 522 3 HOH HOH 522 L HOH 523 3 HOH HOH 523 L HOH 525 3 HOH HOH 525 L HOH 528 3 HOH HOH 528 L HOH 529 3 HOH HOH 529 L HOH 531 3 HOH HOH 531 L HOH 532 3 HOH HOH 532 L HOH 534 3 HOH HOH 534 L HOH 536 3 HOH HOH 536 L HOH 541 3 HOH HOH 541 L HOH 544 3 HOH HOH 544 L HOH 547 3 HOH HOH 547 L HOH 548 3 HOH HOH 548 L HOH 549 3 HOH HOH 549 L HOH 551 3 HOH HOH 551 L HOH 552 3 HOH HOH 552 L HOH 553 3 HOH HOH 553 L HOH 555 3 HOH HOH 555 L HOH 558 3 HOH HOH 558 L HOH 560 3 HOH HOH 560 L HOH 565 3 HOH HOH 565 L HOH 573 3 HOH HOH 573 L HOH 574 3 HOH HOH 574 L HOH 577 3 HOH HOH 577 L HOH 578 3 HOH HOH 578 L HOH 581 3 HOH HOH 581 L HOH 582 3 HOH HOH 582 L HOH 583 3 HOH HOH 583 L HOH 586 3 HOH HOH 586 L HOH 587 3 HOH HOH 587 L HOH 589 3 HOH HOH 589 L HOH 590 3 HOH HOH 590 L HOH 592 3 HOH HOH 592 L HOH 401 3 HOH HOH 401 H HOH 404 3 HOH HOH 404 H HOH 406 3 HOH HOH 406 H HOH 408 3 HOH HOH 408 H HOH 410 3 HOH HOH 410 H HOH 412 3 HOH HOH 412 H HOH 414 3 HOH HOH 414 H HOH 417 3 HOH HOH 417 H HOH 420 3 HOH HOH 420 H HOH 422 3 HOH HOH 422 H HOH 423 3 HOH HOH 423 H HOH 424 3 HOH HOH 424 H HOH 425 3 HOH HOH 425 H HOH 426 3 HOH HOH 426 H HOH 429 3 HOH HOH 429 H HOH 431 3 HOH HOH 431 H HOH 433 3 HOH HOH 433 H HOH 436 3 HOH HOH 436 H HOH 438 3 HOH HOH 438 H HOH 439 3 HOH HOH 439 H HOH 441 3 HOH HOH 441 H HOH 444 3 HOH HOH 444 H HOH 446 3 HOH HOH 446 H HOH 449 3 HOH HOH 449 H HOH 450 3 HOH HOH 450 H HOH 453 3 HOH HOH 453 H HOH 454 3 HOH HOH 454 H HOH 455 3 HOH HOH 455 H HOH 458 3 HOH HOH 458 H HOH 460 3 HOH HOH 460 H HOH 461 3 HOH HOH 461 H HOH 463 3 HOH HOH 463 H HOH 467 3 HOH HOH 467 H HOH 468 3 HOH HOH 468 H HOH 469 3 HOH HOH 469 H HOH 470 3 HOH HOH 470 H HOH 471 3 HOH HOH 471 H HOH 475 3 HOH HOH 475 H HOH 476 3 HOH HOH 476 H HOH 477 3 HOH HOH 477 H HOH 478 3 HOH HOH 478 H HOH 480 3 HOH HOH 480 H HOH 481 3 HOH HOH 481 H HOH 483 3 HOH HOH 483 H HOH 485 3 HOH HOH 485 H HOH 487 3 HOH HOH 487 H HOH 488 3 HOH HOH 488 H HOH 490 3 HOH HOH 490 H HOH 491 3 HOH HOH 491 H HOH 494 3 HOH HOH 494 H HOH 495 3 HOH HOH 495 H HOH 497 3 HOH HOH 497 H HOH 498 3 HOH HOH 498 H HOH 500 3 HOH HOH 500 H HOH 502 3 HOH HOH 502 H HOH 503 3 HOH HOH 503 H HOH 504 3 HOH HOH 504 H HOH 505 3 HOH HOH 505 H HOH 507 3 HOH HOH 507 H HOH 512 3 HOH HOH 512 H HOH 514 3 HOH HOH 514 H HOH 516 3 HOH HOH 516 H HOH 518 3 HOH HOH 518 H HOH 519 3 HOH HOH 519 H HOH 524 3 HOH HOH 524 H HOH 526 3 HOH HOH 526 H HOH 527 3 HOH HOH 527 H HOH 530 3 HOH HOH 530 H HOH 533 3 HOH HOH 533 H HOH 535 3 HOH HOH 535 H HOH 537 3 HOH HOH 537 H HOH 538 3 HOH HOH 538 H HOH 539 3 HOH HOH 539 H HOH 540 3 HOH HOH 540 H HOH 542 3 HOH HOH 542 H HOH 543 3 HOH HOH 543 H HOH 545 3 HOH HOH 545 H HOH 546 3 HOH HOH 546 H HOH 550 3 HOH HOH 550 H HOH 554 3 HOH HOH 554 H HOH 556 3 HOH HOH 556 H HOH 557 3 HOH HOH 557 H HOH 559 3 HOH HOH 559 H HOH 561 3 HOH HOH 561 H HOH 562 3 HOH HOH 562 H HOH 563 3 HOH HOH 563 H HOH 564 3 HOH HOH 564 H HOH 566 3 HOH HOH 566 H HOH 567 3 HOH HOH 567 H HOH 568 3 HOH HOH 568 H HOH 569 3 HOH HOH 569 H HOH 570 3 HOH HOH 570 H HOH 571 3 HOH HOH 571 H HOH 572 3 HOH HOH 572 H HOH 575 3 HOH HOH 575 H HOH 576 3 HOH HOH 576 H HOH 579 3 HOH HOH 579 H HOH 580 3 HOH HOH 580 H HOH 584 3 HOH HOH 584 H HOH 585 3 HOH HOH 585 H HOH 588 3 HOH HOH 588 H HOH 591 3 HOH HOH 591 H ASP 1 n 1 ASP 1 L ILE 2 n 2 ILE 2 L VAL 3 n 3 VAL 3 L LEU 4 n 4 LEU 4 L THR 5 n 5 THR 5 L GLN 6 n 6 GLN 6 L SER 7 n 7 SER 7 L PRO 8 n 8 PRO 8 L ALA 9 n 9 ALA 9 L SER 10 n 10 SER 10 L LEU 11 n 11 LEU 11 L SER 12 n 12 SER 12 L ALA 13 n 13 ALA 13 L SER 14 n 14 SER 14 L VAL 15 n 15 VAL 15 L GLY 16 n 16 GLY 16 L GLU 17 n 17 GLU 17 L THR 18 n 18 THR 18 L VAL 19 n 19 VAL 19 L THR 20 n 20 THR 20 L ILE 21 n 21 ILE 21 L THR 22 n 22 THR 22 L CYS 23 n 23 CYS 23 L ARG 24 n 24 ARG 24 L ALA 25 n 25 ALA 25 L SER 26 n 26 SER 26 L GLY 27 n 27 GLY 27 L ASN 28 n 28 ASN 28 L ILE 29 n 29 ILE 29 L HIS 30 n 30 HIS 30 L ASN 31 n 31 ASN 31 L TYR 32 n 32 TYR 32 L LEU 33 n 33 LEU 33 L ALA 34 n 34 ALA 34 L TRP 35 n 35 TRP 35 L TYR 36 n 36 TYR 36 L GLN 37 n 37 GLN 37 L GLN 38 n 38 GLN 38 L LYS 39 n 39 LYS 39 L GLN 40 n 40 GLN 40 L GLY 41 n 41 GLY 41 L LYS 42 n 42 LYS 42 L SER 43 n 43 SER 43 L PRO 44 n 44 PRO 44 L GLN 45 n 45 GLN 45 L LEU 46 n 46 LEU 46 L LEU 47 n 47 LEU 47 L VAL 48 n 48 VAL 48 L TYR 49 n 49 TYR 49 L TYR 50 n 50 TYR 50 L THR 51 n 51 THR 51 L THR 52 n 52 THR 52 L THR 53 n 53 THR 53 L LEU 54 n 54 LEU 54 L ALA 55 n 55 ALA 55 L ASP 56 n 56 ASP 56 L GLY 57 n 57 GLY 57 L VAL 58 n 58 VAL 58 L PRO 59 n 59 PRO 59 L SER 60 n 60 SER 60 L ARG 61 n 61 ARG 61 L PHE 62 n 62 PHE 62 L SER 63 n 63 SER 63 L GLY 64 n 64 GLY 64 L SER 65 n 65 SER 65 L GLY 66 n 66 GLY 66 L SER 67 n 67 SER 67 L GLY 68 n 68 GLY 68 L THR 69 n 69 THR 69 L GLN 70 n 70 GLN 70 L TYR 71 n 71 TYR 71 L SER 72 n 72 SER 72 L LEU 73 n 73 LEU 73 L LYS 74 n 74 LYS 74 L ILE 75 n 75 ILE 75 L ASN 76 n 76 ASN 76 L SER 77 n 77 SER 77 L LEU 78 n 78 LEU 78 L GLN 79 n 79 GLN 79 L PRO 80 n 80 PRO 80 L ASP 81 n 81 ASP 81 L ASP 82 n 82 ASP 82 L PHE 83 n 83 PHE 83 L GLY 84 n 84 GLY 84 L SER 85 n 85 SER 85 L TYR 86 n 86 TYR 86 L TYR 87 n 87 TYR 87 L CYS 88 n 88 CYS 88 L GLN 89 n 89 GLN 89 L HIS 90 n 90 HIS 90 L PHE 91 n 91 PHE 91 L TRP 92 n 92 TRP 92 L SER 93 n 93 SER 93 L THR 94 n 94 THR 94 L PRO 95 n 95 PRO 95 L ARG 96 n 96 ARG 96 L THR 97 n 97 THR 97 L PHE 98 n 98 PHE 98 L GLY 99 n 99 GLY 99 L GLY 100 n 100 GLY 100 L GLY 101 n 101 GLY 101 L THR 102 n 102 THR 102 L LYS 103 n 103 LYS 103 L LEU 104 n 104 LEU 104 L GLU 105 n 105 GLU 105 L ILE 106 n 106 ILE 106 L LYS 107 n 107 LYS 107 L GLN 201 n 1 GLN 201 H VAL 202 n 2 VAL 202 H GLN 203 n 3 GLN 203 H LEU 204 n 4 LEU 204 H GLN 205 n 5 GLN 205 H GLU 206 n 6 GLU 206 H SER 207 n 7 SER 207 H GLY 208 n 8 GLY 208 H PRO 209 n 9 PRO 209 H GLY 210 n 10 GLY 210 H LEU 211 n 11 LEU 211 H VAL 212 n 12 VAL 212 H ALA 213 n 13 ALA 213 H PRO 214 n 14 PRO 214 H SER 215 n 15 SER 215 H GLN 216 n 16 GLN 216 H SER 217 n 17 SER 217 H LEU 218 n 18 LEU 218 H SER 219 n 19 SER 219 H ILE 220 n 20 ILE 220 H THR 221 n 21 THR 221 H CYS 222 n 22 CYS 222 H THR 223 n 23 THR 223 H VAL 224 n 24 VAL 224 H SER 225 n 25 SER 225 H GLY 226 n 26 GLY 226 H PHE 227 n 27 PHE 227 H SER 228 n 28 SER 228 H LEU 229 n 29 LEU 229 H THR 230 n 30 THR 230 H GLY 231 n 31 GLY 231 H TYR 232 n 32 TYR 232 H GLY 233 n 33 GLY 233 H VAL 234 n 34 VAL 234 H ASN 235 n 35 ASN 235 H TRP 236 n 36 TRP 236 H VAL 237 n 37 VAL 237 H ARG 238 n 38 ARG 238 H GLN 239 n 39 GLN 239 H PRO 240 n 40 PRO 240 H PRO 241 n 41 PRO 241 H GLY 242 n 42 GLY 242 H LYS 243 n 43 LYS 243 H GLY 244 n 44 GLY 244 H LEU 245 n 45 LEU 245 H GLU 246 n 46 GLU 246 H TRP 247 n 47 TRP 247 H LEU 248 n 48 LEU 248 H GLY 249 n 49 GLY 249 H MET 250 n 50 MET 250 H ILE 251 n 51 ILE 251 H TRP 252 n 52 TRP 252 H GLY 253 n 53 GLY 253 H ASP 254 n 54 ASP 254 H GLY 255 n 55 GLY 255 H ASN 256 n 56 ASN 256 H THR 257 n 57 THR 257 H ASP 258 n 58 ASP 258 H TYR 259 n 59 TYR 259 H ASN 260 n 60 ASN 260 H SER 261 n 61 SER 261 H ALA 262 n 62 ALA 262 H LEU 263 n 63 LEU 263 H LYS 264 n 64 LYS 264 H SER 265 n 65 SER 265 H ARG 266 n 66 ARG 266 H LEU 267 n 67 LEU 267 H SER 268 n 68 SER 268 H ILE 269 n 69 ILE 269 H SER 270 n 70 SER 270 H LYS 271 n 71 LYS 271 H ASP 272 n 72 ASP 272 H ASN 273 n 73 ASN 273 H SER 274 n 74 SER 274 H LYS 275 n 75 LYS 275 H SER 276 n 76 SER 276 H GLN 277 n 77 GLN 277 H VAL 278 n 78 VAL 278 H PHE 279 n 79 PHE 279 H LEU 280 n 80 LEU 280 H LYS 281 n 81 LYS 281 H MET 282 n 82 MET 282 H ASN 283 n 83 ASN 283 H SER 284 n 84 SER 284 H LEU 285 n 85 LEU 285 H HIS 286 n 86 HIS 286 H THR 287 n 87 THR 287 H ASP 288 n 88 ASP 288 H ASP 289 n 89 ASP 289 H THR 290 n 90 THR 290 H ALA 291 n 91 ALA 291 H ARG 292 n 92 ARG 292 H TYR 293 n 93 TYR 293 H TYR 294 n 94 TYR 294 H CYS 295 n 95 CYS 295 H ALA 296 n 96 ALA 296 H ARG 297 n 97 ARG 297 H GLU 298 n 98 GLU 298 H ARG 299 n 99 ARG 299 H ASP 300 n 100 ASP 300 H TYR 301 n 101 TYR 301 H ARG 302 n 102 ARG 302 H LEU 303 n 103 LEU 303 H ASP 304 n 104 ASP 304 H TYR 305 n 105 TYR 305 H TRP 306 n 106 TRP 306 H GLY 307 n 107 GLY 307 H GLN 308 n 108 GLN 308 H GLY 309 n 109 GLY 309 H THR 310 n 110 THR 310 H THR 311 n 111 THR 311 H VAL 312 n 112 VAL 312 H THR 313 n 113 THR 313 H VAL 314 n 114 VAL 314 H SER 315 n 115 SER 315 H SER 316 n 116 SER 316 H 0.155 author_and_software_defined_assembly PISA 2 dimeric 1610 -11 9860 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 L O THR 5 A O THR 5 L N ARG 24 A N ARG 24 L O VAL 19 A O VAL 19 L N ILE 75 A N ILE 75 L O GLN 70 A O GLN 70 L N SER 67 A N SER 67 L O LEU 11 A O LEU 11 L N LYS 103 A N LYS 103 L O THR 102 A O THR 102 L N TYR 86 A N TYR 86 L O SER 85 A O SER 85 L N GLN 38 A N GLN 38 L O TRP 35 A O TRP 35 L N VAL 48 A N VAL 48 H O GLN 203 B O GLN 3 H N SER 225 B N SER 25 H O LEU 218 B O LEU 18 H N MET 282 B N MET 82 H O GLN 277 B O GLN 77 H N ASP 272 B N ASP 72 H O THR 310 B O THR 110 H N TYR 293 B N TYR 93 H O ARG 292 B O ARG 92 H N GLN 239 B N GLN 39 H O VAL 234 B O VAL 34 H N ILE 251 B N ILE 51 H O MET 250 B O MET 50 H N ASP 258 B N ASP 58 H O ARG 297 B O ARG 97 H N TYR 305 B N TYR 105 1 L CG ARG 24 A CG ARG 24 1 Y 1 L CD ARG 24 A CD ARG 24 1 Y 1 L NE ARG 24 A NE ARG 24 1 Y 1 L CZ ARG 24 A CZ ARG 24 1 Y 1 L NH1 ARG 24 A NH1 ARG 24 1 Y 1 L NH2 ARG 24 A NH2 ARG 24 1 Y 1 L CG ASP 56 A CG ASP 56 1 Y 1 L OD1 ASP 56 A OD1 ASP 56 1 Y 1 L OD2 ASP 56 A OD2 ASP 56 1 Y 1 H OG SER 316 B OG SER 116 1 Y 1 -10.94 0.90 118.30 107.36 L L L CB CG OD2 ASP ASP ASP 1 1 1 N 1 11.39 1.50 110.50 121.89 L L L N CA CB SER SER SER 10 10 10 N 1 -4.12 0.60 121.00 116.88 L L L CB CG CD1 TYR TYR TYR 32 32 32 N 1 25.54 2.60 111.60 137.14 L L L CB CG CD GLN GLN GLN 45 45 45 N 1 9.58 1.50 110.50 120.08 L L L N CA CB SER SER SER 67 67 67 N 1 -10.83 1.80 110.60 99.77 L L L N CA CB GLN GLN GLN 70 70 70 N 1 -14.18 1.50 110.50 96.32 L L L N CA CB SER SER SER 72 72 72 N 1 -3.84 0.50 120.30 116.46 L L L NE CZ NH2 ARG ARG ARG 96 96 96 N 1 14.20 2.20 113.40 127.60 H H H CA CB CG GLN GLN GLN 201 201 201 N 1 16.99 2.10 120.10 137.09 H H H CA C O GLN GLN GLN 201 201 201 N 1 -14.17 2.20 117.20 103.03 H H H CA C N GLN GLN VAL 201 201 202 Y 1 -8.42 1.20 123.30 114.88 H H H OE1 CD OE2 GLU GLU GLU 206 206 206 N 1 3.09 0.50 120.30 123.39 H H H NE CZ NH1 ARG ARG ARG 238 238 238 N 1 -5.04 0.50 120.30 115.26 H H H NE CZ NH2 ARG ARG ARG 238 238 238 N 1 5.98 0.50 120.30 126.28 H H H NE CZ NH1 ARG ARG ARG 266 266 266 N 1 -8.08 0.50 120.30 112.22 H H H NE CZ NH2 ARG ARG ARG 266 266 266 N 1 15.77 1.70 113.30 129.07 H H H CA CB CG MET MET MET 282 282 282 N 1 3.13 0.50 120.30 123.43 H H H NE CZ NH1 ARG ARG ARG 297 297 297 N 1 -4.24 0.50 120.30 116.06 H H H NE CZ NH2 ARG ARG ARG 297 297 297 N 1 3.45 0.50 120.30 123.75 H H H NE CZ NH2 ARG ARG ARG 299 299 299 N 1 -7.08 0.90 118.30 111.22 H H H CB CG OD1 ASP ASP ASP 300 300 300 N 1 -4.30 0.60 121.00 116.70 H H H CB CG CD1 TYR TYR TYR 301 301 301 N 1 -5.40 0.50 120.30 114.90 H H H NE CZ NH2 ARG ARG ARG 302 302 302 N 1 9.08 0.90 118.30 127.38 H H H CB CG OD1 ASP ASP ASP 304 304 304 N 1 -15.32 2.20 113.40 98.08 H H H CA CB CG GLN GLN GLN 308 308 308 N 1 46.30 2.60 111.60 157.90 H H H CB CG CD GLN GLN GLN 308 308 308 N 1 L THR 51 67.98 -47.97 1 L SER 77 36.60 89.12 1 L SER 93 56.26 -142.09 1 H SER 215 78.20 -5.31 1 H SER 284 39.54 69.26 1 H ASP 300 42.41 75.95 21.49 0.155 2.01 6.0 15187 15187 1 0.0 MOLECULAR REPLACEMENT PDB ENTRY 1VFA 2.01 6.0 192 1909 0 0 1717 0.013 0.020 0.046 0.040 0.045 0.050 1.259 1.500 1.947 2.000 2.868 2.000 4.211 3.000 0.013 0.020 0.116 0.120 0.177 0.200 0.176 0.200 0.160 0.200 2.36 3.0 16.8 20.0 11.4 15.0 15.0 22.13 1.96 17.18 1A7N 218064 0.0 0.089 1 8.1 97.1 0.261 1.96 2.11 7.1 81.6 data reduction MOSFLM data reduction AGROVATA/ROTAVATA model building ALMN/CCP4 refinement CCP4 data scaling Agrovata data scaling ROTAVATA phasing CCP4 (ALMN) FV FRAGMENT OF MOUSE MONOCLONAL ANTIBODY D1.3 (BALB/C, IGG1, K) VARIANT FOR CHAIN L GLU81->ASP AND CHAIN H LEU312->VAL 1 N N 2 N N 3 N N 3 N N L PRO 80 A PRO 80 HELX_P L ASP 82 A ASP 82 5 1 3 H THR 287 B THR 87 HELX_P H ASP 289 B ASP 89 5 2 3 disulf 2.053 L CYS 23 A SG CYS 23 1_555 L CYS 88 A SG CYS 88 1_555 disulf 2.039 H CYS 222 B SG CYS 22 1_555 H CYS 295 B SG CYS 95 1_555 IMMUNOGLOBULIN IMMUNOGLOBULIN L SER 7 A SER 7 1 L PRO 8 A PRO 8 -1.43 L THR 94 A THR 94 1 L PRO 95 A PRO 95 -1.72 KV5C_MOUSE UNP 1 1 P01635 DIELTQSPASLSASVGETVTITCRASGNIHNYLAWYQQKQGKSPQLLVYKAQTLADGVPSRFSGSGSGTQYSLKINSLQP EDFGSYYCQHFWSTPPWTFGGGTKLEIKRA HV44_MOUSE UNP 2 1 P01820 DVLMTQTPLTLSVTIGQPASISCKSSQSLLHTDGKTYLIWLLQRPGQSPKRLIYLVSKLDSGVPDRFTGSGSGTDFTLKI SRVEAEDLGVYYCWQGTHFPQTFGGGTKLEIKRADAAPGSTSGSGKSSEGKGQVQLQESGPGLVAPSQSLSITCTVSGFS LTGYGVNWVRQPPGKGLEWLGMIWGDGNTDYNSALKSRLSISKDNSKSQVFLKMNSLHTDDTARYYCARERDYRLDYWGQ GTTVTVSSTKTTPPSVYPAAAHHHHHHGAAEQKLISEEDLNGAA 1 108 1A7N 1 107 P01635 L 1 1 107 133 248 1A7N 201 316 P01820 H 2 1 116 1 GLU conflict VAL 3 1A7N L P01635 UNP 3 3 1 LYS conflict TYR 50 1A7N L P01635 UNP 50 50 1 ALA conflict THR 51 1A7N L P01635 UNP 51 51 1 GLN conflict THR 52 1A7N L P01635 UNP 52 52 1 GLU variant ASP 81 1A7N L P01635 UNP 81 81 1 PRO deletion 1A7N L P01635 UNP 95 1 TRP conflict ARG 96 1A7N L P01635 UNP 97 96 4 5 4 5 2 anti-parallel anti-parallel anti-parallel parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel L LEU 4 A LEU 4 L SER 7 A SER 7 L VAL 19 A VAL 19 L ALA 25 A ALA 25 L GLN 70 A GLN 70 L ILE 75 A ILE 75 L PHE 62 A PHE 62 L SER 67 A SER 67 L SER 10 A SER 10 L ALA 13 A ALA 13 L THR 102 A THR 102 L ILE 106 A ILE 106 L GLY 84 A GLY 84 L HIS 90 A HIS 90 L LEU 33 A LEU 33 L GLN 38 A GLN 38 L GLN 45 A GLN 45 L VAL 48 A VAL 48 H GLN 203 B GLN 3 H SER 207 B SER 7 H LEU 218 B LEU 18 H SER 225 B SER 25 H GLN 277 B GLN 77 H MET 282 B MET 82 H LEU 267 B LEU 67 H ASP 272 B ASP 72 H THR 310 B THR 110 H VAL 312 B VAL 112 H ALA 291 B ALA 91 H GLU 298 B GLU 98 H GLY 233 B GLY 33 H GLN 239 B GLN 39 H LEU 245 B LEU 45 H ILE 251 B ILE 51 H THR 257 B THR 57 H TYR 259 B TYR 59 H ALA 296 B ALA 96 H GLU 298 B GLU 98 H LEU 303 B LEU 103 H TRP 306 B TRP 106 96 P 43 21 2