0.011074
0.000000
0.000000
0.000000
0.011074
0.000000
0.000000
0.000000
0.017561
0.00000
0.00000
0.00000
Marks, C.
Henrick, K.
Winter, G.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.00
90.00
90.00
90.301
90.301
56.945
C2 H4 O2
60.052
ACETIC ACID
non-polymer
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
To be Published
0353
X-Ray Structures of D1.3 Fv Mutants
US
Proc.Natl.Acad.Sci.USA
PNASA6
0040
0027-8424
91
1089
Bound Water Molecules and Conformational Stabilization Help Mediate an Antigen-Antibody Association
1994
UK
Nature
NATUAS
0006
0028-0836
347
483
Small Rearrangements in Structures of Fv and Fab Fragments of Antibody D1.3 On Antigen Binding
1990
10.2210/pdb1a7p/pdb
pdb_00001a7p
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
269
1
IMAGE PLATE
1992-09
MARRESEARCH
M
x-ray
1
1.5418
1.0
1.5418
11676.913
IGG1-KAPPA D1.3 FV (LIGHT CHAIN)
FV FRAGMENT
P95S, E81D
1
man
polymer
12843.249
IGG1-KAPPA D1.3 FV (HEAVY CHAIN)
FV FRAGMENT
L312V
1
man
polymer
60.052
ACETIC ACID
1
syn
non-polymer
18.015
water
141
nat
water
no
no
DIVLTQSPASLSASVGETVTITCRASGNIHNYLAWYQQKQGKSPQLLVYYTTTLADGVPSRFSGSGSGTQYSLKINSLQP
DDFGSYYCQHFWSTSRTFGGGTKLEIK
DIVLTQSPASLSASVGETVTITCRASGNIHNYLAWYQQKQGKSPQLLVYYTTTLADGVPSRFSGSGSGTQYSLKINSLQP
DDFGSYYCQHFWSTSRTFGGGTKLEIK
L
polypeptide(L)
no
no
QVQLQESGPGLVAPSQSLSITCTVSGFSLTGYGVNWVRQPPGKGLEWLGMIWGDGNTDYNSALKSRLSISKDNSKSQVFL
KMNSLHTDDTARYYCARERDYRLDYWGQGTTVTVSS
QVQLQESGPGLVAPSQSLSITCTVSGFSLTGYGVNWVRQPPGKGLEWLGMIWGDGNTDYNSALKSRLSISKDNSKSQVFL
KMNSLHTDDTARYYCARERDYRLDYWGQGTTVTVSS
H
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
house mouse
Mus
Escherichia
sample
10090
Mus musculus
CHAIN L, E81D, CHAIN H, L312V
562
Escherichia coli
house mouse
Mus
Escherichia
sample
10090
Mus musculus
CHAIN L, E81D, CHAIN H, L312V
562
Escherichia coli
1
2.37
48.02
database_2
software
struct_ref_seq_dif
struct_site
pdbx_initial_refinement_model
repository
Initial release
Version format compliance
Version format compliance
Database references
Derived calculations
Refinement description
Refinement description
1
0
1998-04-29
1
1
2008-03-25
1
2
2011-07-13
1
3
2021-11-03
1
4
2023-08-02
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_software.name
_struct_ref_seq_dif.details
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
Y
BNL
1998-03-16
REL
REL
ACY
ACETIC ACID
HOH
water
THE ANTIBODY IS SECRETED INTO PERIPLASMIC SPACE. VH AND VL
DOMAINS ARE COVALENTLY LINKED AND THEY ASSOCIATE
SPONTANEOUSLY. CHAIN IDENTIFIER *L* STANDS FOR LIGHT-CHAIN
RESIDUES, *H* FOR HEAVY-CHAIN RESIDUES. THE NUMBERING
SYSTEM USED IN THIS ENTRY IS SEQUENTIAL, FROM 1 - 107 FOR
THE LIGHT CHAIN AND FROM 201 - 316 FOR THE HEAVY CHAIN.
1VFA
PDB ENTRY 1VFA
PDB
experimental model
ACY
400
3
ACY
ACY
400
H
HOH
402
4
HOH
HOH
402
L
HOH
403
4
HOH
HOH
403
L
HOH
409
4
HOH
HOH
409
L
HOH
413
4
HOH
HOH
413
L
HOH
415
4
HOH
HOH
415
L
HOH
416
4
HOH
HOH
416
L
HOH
418
4
HOH
HOH
418
L
HOH
419
4
HOH
HOH
419
L
HOH
421
4
HOH
HOH
421
L
HOH
427
4
HOH
HOH
427
L
HOH
428
4
HOH
HOH
428
L
HOH
430
4
HOH
HOH
430
L
HOH
432
4
HOH
HOH
432
L
HOH
434
4
HOH
HOH
434
L
HOH
435
4
HOH
HOH
435
L
HOH
437
4
HOH
HOH
437
L
HOH
440
4
HOH
HOH
440
L
HOH
442
4
HOH
HOH
442
L
HOH
443
4
HOH
HOH
443
L
HOH
447
4
HOH
HOH
447
L
HOH
451
4
HOH
HOH
451
L
HOH
455
4
HOH
HOH
455
L
HOH
456
4
HOH
HOH
456
L
HOH
457
4
HOH
HOH
457
L
HOH
459
4
HOH
HOH
459
L
HOH
464
4
HOH
HOH
464
L
HOH
465
4
HOH
HOH
465
L
HOH
472
4
HOH
HOH
472
L
HOH
479
4
HOH
HOH
479
L
HOH
484
4
HOH
HOH
484
L
HOH
489
4
HOH
HOH
489
L
HOH
493
4
HOH
HOH
493
L
HOH
499
4
HOH
HOH
499
L
HOH
501
4
HOH
HOH
501
L
HOH
502
4
HOH
HOH
502
L
HOH
506
4
HOH
HOH
506
L
HOH
508
4
HOH
HOH
508
L
HOH
509
4
HOH
HOH
509
L
HOH
511
4
HOH
HOH
511
L
HOH
513
4
HOH
HOH
513
L
HOH
515
4
HOH
HOH
515
L
HOH
517
4
HOH
HOH
517
L
HOH
520
4
HOH
HOH
520
L
HOH
521
4
HOH
HOH
521
L
HOH
523
4
HOH
HOH
523
L
HOH
525
4
HOH
HOH
525
L
HOH
529
4
HOH
HOH
529
L
HOH
532
4
HOH
HOH
532
L
HOH
534
4
HOH
HOH
534
L
HOH
548
4
HOH
HOH
548
L
HOH
568
4
HOH
HOH
568
L
HOH
575
4
HOH
HOH
575
L
HOH
577
4
HOH
HOH
577
L
HOH
582
4
HOH
HOH
582
L
HOH
589
4
HOH
HOH
589
L
HOH
592
4
HOH
HOH
592
L
HOH
599
4
HOH
HOH
599
L
HOH
601
4
HOH
HOH
601
L
HOH
603
4
HOH
HOH
603
L
HOH
401
4
HOH
HOH
401
H
HOH
404
4
HOH
HOH
404
H
HOH
406
4
HOH
HOH
406
H
HOH
408
4
HOH
HOH
408
H
HOH
410
4
HOH
HOH
410
H
HOH
412
4
HOH
HOH
412
H
HOH
414
4
HOH
HOH
414
H
HOH
417
4
HOH
HOH
417
H
HOH
420
4
HOH
HOH
420
H
HOH
423
4
HOH
HOH
423
H
HOH
424
4
HOH
HOH
424
H
HOH
425
4
HOH
HOH
425
H
HOH
426
4
HOH
HOH
426
H
HOH
429
4
HOH
HOH
429
H
HOH
431
4
HOH
HOH
431
H
HOH
433
4
HOH
HOH
433
H
HOH
436
4
HOH
HOH
436
H
HOH
438
4
HOH
HOH
438
H
HOH
439
4
HOH
HOH
439
H
HOH
441
4
HOH
HOH
441
H
HOH
444
4
HOH
HOH
444
H
HOH
446
4
HOH
HOH
446
H
HOH
449
4
HOH
HOH
449
H
HOH
450
4
HOH
HOH
450
H
HOH
452
4
HOH
HOH
452
H
HOH
453
4
HOH
HOH
453
H
HOH
458
4
HOH
HOH
458
H
HOH
460
4
HOH
HOH
460
H
HOH
461
4
HOH
HOH
461
H
HOH
463
4
HOH
HOH
463
H
HOH
467
4
HOH
HOH
467
H
HOH
471
4
HOH
HOH
471
H
HOH
475
4
HOH
HOH
475
H
HOH
476
4
HOH
HOH
476
H
HOH
480
4
HOH
HOH
480
H
HOH
481
4
HOH
HOH
481
H
HOH
488
4
HOH
HOH
488
H
HOH
490
4
HOH
HOH
490
H
HOH
494
4
HOH
HOH
494
H
HOH
495
4
HOH
HOH
495
H
HOH
496
4
HOH
HOH
496
H
HOH
497
4
HOH
HOH
497
H
HOH
498
4
HOH
HOH
498
H
HOH
503
4
HOH
HOH
503
H
HOH
504
4
HOH
HOH
504
H
HOH
507
4
HOH
HOH
507
H
HOH
512
4
HOH
HOH
512
H
HOH
514
4
HOH
HOH
514
H
HOH
516
4
HOH
HOH
516
H
HOH
518
4
HOH
HOH
518
H
HOH
519
4
HOH
HOH
519
H
HOH
522
4
HOH
HOH
522
H
HOH
524
4
HOH
HOH
524
H
HOH
526
4
HOH
HOH
526
H
HOH
530
4
HOH
HOH
530
H
HOH
535
4
HOH
HOH
535
H
HOH
537
4
HOH
HOH
537
H
HOH
538
4
HOH
HOH
538
H
HOH
540
4
HOH
HOH
540
H
HOH
542
4
HOH
HOH
542
H
HOH
545
4
HOH
HOH
545
H
HOH
555
4
HOH
HOH
555
H
HOH
559
4
HOH
HOH
559
H
HOH
579
4
HOH
HOH
579
H
HOH
580
4
HOH
HOH
580
H
HOH
583
4
HOH
HOH
583
H
HOH
584
4
HOH
HOH
584
H
HOH
585
4
HOH
HOH
585
H
HOH
586
4
HOH
HOH
586
H
HOH
587
4
HOH
HOH
587
H
HOH
588
4
HOH
HOH
588
H
HOH
590
4
HOH
HOH
590
H
HOH
591
4
HOH
HOH
591
H
HOH
593
4
HOH
HOH
593
H
HOH
594
4
HOH
HOH
594
H
HOH
595
4
HOH
HOH
595
H
HOH
596
4
HOH
HOH
596
H
HOH
597
4
HOH
HOH
597
H
HOH
598
4
HOH
HOH
598
H
HOH
600
4
HOH
HOH
600
H
HOH
602
4
HOH
HOH
602
H
HOH
604
4
HOH
HOH
604
H
ASP
1
n
1
ASP
1
L
ILE
2
n
2
ILE
2
L
VAL
3
n
3
VAL
3
L
LEU
4
n
4
LEU
4
L
THR
5
n
5
THR
5
L
GLN
6
n
6
GLN
6
L
SER
7
n
7
SER
7
L
PRO
8
n
8
PRO
8
L
ALA
9
n
9
ALA
9
L
SER
10
n
10
SER
10
L
LEU
11
n
11
LEU
11
L
SER
12
n
12
SER
12
L
ALA
13
n
13
ALA
13
L
SER
14
n
14
SER
14
L
VAL
15
n
15
VAL
15
L
GLY
16
n
16
GLY
16
L
GLU
17
n
17
GLU
17
L
THR
18
n
18
THR
18
L
VAL
19
n
19
VAL
19
L
THR
20
n
20
THR
20
L
ILE
21
n
21
ILE
21
L
THR
22
n
22
THR
22
L
CYS
23
n
23
CYS
23
L
ARG
24
n
24
ARG
24
L
ALA
25
n
25
ALA
25
L
SER
26
n
26
SER
26
L
GLY
27
n
27
GLY
27
L
ASN
28
n
28
ASN
28
L
ILE
29
n
29
ILE
29
L
HIS
30
n
30
HIS
30
L
ASN
31
n
31
ASN
31
L
TYR
32
n
32
TYR
32
L
LEU
33
n
33
LEU
33
L
ALA
34
n
34
ALA
34
L
TRP
35
n
35
TRP
35
L
TYR
36
n
36
TYR
36
L
GLN
37
n
37
GLN
37
L
GLN
38
n
38
GLN
38
L
LYS
39
n
39
LYS
39
L
GLN
40
n
40
GLN
40
L
GLY
41
n
41
GLY
41
L
LYS
42
n
42
LYS
42
L
SER
43
n
43
SER
43
L
PRO
44
n
44
PRO
44
L
GLN
45
n
45
GLN
45
L
LEU
46
n
46
LEU
46
L
LEU
47
n
47
LEU
47
L
VAL
48
n
48
VAL
48
L
TYR
49
n
49
TYR
49
L
TYR
50
n
50
TYR
50
L
THR
51
n
51
THR
51
L
THR
52
n
52
THR
52
L
THR
53
n
53
THR
53
L
LEU
54
n
54
LEU
54
L
ALA
55
n
55
ALA
55
L
ASP
56
n
56
ASP
56
L
GLY
57
n
57
GLY
57
L
VAL
58
n
58
VAL
58
L
PRO
59
n
59
PRO
59
L
SER
60
n
60
SER
60
L
ARG
61
n
61
ARG
61
L
PHE
62
n
62
PHE
62
L
SER
63
n
63
SER
63
L
GLY
64
n
64
GLY
64
L
SER
65
n
65
SER
65
L
GLY
66
n
66
GLY
66
L
SER
67
n
67
SER
67
L
GLY
68
n
68
GLY
68
L
THR
69
n
69
THR
69
L
GLN
70
n
70
GLN
70
L
TYR
71
n
71
TYR
71
L
SER
72
n
72
SER
72
L
LEU
73
n
73
LEU
73
L
LYS
74
n
74
LYS
74
L
ILE
75
n
75
ILE
75
L
ASN
76
n
76
ASN
76
L
SER
77
n
77
SER
77
L
LEU
78
n
78
LEU
78
L
GLN
79
n
79
GLN
79
L
PRO
80
n
80
PRO
80
L
ASP
81
n
81
ASP
81
L
ASP
82
n
82
ASP
82
L
PHE
83
n
83
PHE
83
L
GLY
84
n
84
GLY
84
L
SER
85
n
85
SER
85
L
TYR
86
n
86
TYR
86
L
TYR
87
n
87
TYR
87
L
CYS
88
n
88
CYS
88
L
GLN
89
n
89
GLN
89
L
HIS
90
n
90
HIS
90
L
PHE
91
n
91
PHE
91
L
TRP
92
n
92
TRP
92
L
SER
93
n
93
SER
93
L
THR
94
n
94
THR
94
L
SER
95
n
95
SER
95
L
ARG
96
n
96
ARG
96
L
THR
97
n
97
THR
97
L
PHE
98
n
98
PHE
98
L
GLY
99
n
99
GLY
99
L
GLY
100
n
100
GLY
100
L
GLY
101
n
101
GLY
101
L
THR
102
n
102
THR
102
L
LYS
103
n
103
LYS
103
L
LEU
104
n
104
LEU
104
L
GLU
105
n
105
GLU
105
L
ILE
106
n
106
ILE
106
L
LYS
107
n
107
LYS
107
L
GLN
201
n
1
GLN
201
H
VAL
202
n
2
VAL
202
H
GLN
203
n
3
GLN
203
H
LEU
204
n
4
LEU
204
H
GLN
205
n
5
GLN
205
H
GLU
206
n
6
GLU
206
H
SER
207
n
7
SER
207
H
GLY
208
n
8
GLY
208
H
PRO
209
n
9
PRO
209
H
GLY
210
n
10
GLY
210
H
LEU
211
n
11
LEU
211
H
VAL
212
n
12
VAL
212
H
ALA
213
n
13
ALA
213
H
PRO
214
n
14
PRO
214
H
SER
215
n
15
SER
215
H
GLN
216
n
16
GLN
216
H
SER
217
n
17
SER
217
H
LEU
218
n
18
LEU
218
H
SER
219
n
19
SER
219
H
ILE
220
n
20
ILE
220
H
THR
221
n
21
THR
221
H
CYS
222
n
22
CYS
222
H
THR
223
n
23
THR
223
H
VAL
224
n
24
VAL
224
H
SER
225
n
25
SER
225
H
GLY
226
n
26
GLY
226
H
PHE
227
n
27
PHE
227
H
SER
228
n
28
SER
228
H
LEU
229
n
29
LEU
229
H
THR
230
n
30
THR
230
H
GLY
231
n
31
GLY
231
H
TYR
232
n
32
TYR
232
H
GLY
233
n
33
GLY
233
H
VAL
234
n
34
VAL
234
H
ASN
235
n
35
ASN
235
H
TRP
236
n
36
TRP
236
H
VAL
237
n
37
VAL
237
H
ARG
238
n
38
ARG
238
H
GLN
239
n
39
GLN
239
H
PRO
240
n
40
PRO
240
H
PRO
241
n
41
PRO
241
H
GLY
242
n
42
GLY
242
H
LYS
243
n
43
LYS
243
H
GLY
244
n
44
GLY
244
H
LEU
245
n
45
LEU
245
H
GLU
246
n
46
GLU
246
H
TRP
247
n
47
TRP
247
H
LEU
248
n
48
LEU
248
H
GLY
249
n
49
GLY
249
H
MET
250
n
50
MET
250
H
ILE
251
n
51
ILE
251
H
TRP
252
n
52
TRP
252
H
GLY
253
n
53
GLY
253
H
ASP
254
n
54
ASP
254
H
GLY
255
n
55
GLY
255
H
ASN
256
n
56
ASN
256
H
THR
257
n
57
THR
257
H
ASP
258
n
58
ASP
258
H
TYR
259
n
59
TYR
259
H
ASN
260
n
60
ASN
260
H
SER
261
n
61
SER
261
H
ALA
262
n
62
ALA
262
H
LEU
263
n
63
LEU
263
H
LYS
264
n
64
LYS
264
H
SER
265
n
65
SER
265
H
ARG
266
n
66
ARG
266
H
LEU
267
n
67
LEU
267
H
SER
268
n
68
SER
268
H
ILE
269
n
69
ILE
269
H
SER
270
n
70
SER
270
H
LYS
271
n
71
LYS
271
H
ASP
272
n
72
ASP
272
H
ASN
273
n
73
ASN
273
H
SER
274
n
74
SER
274
H
LYS
275
n
75
LYS
275
H
SER
276
n
76
SER
276
H
GLN
277
n
77
GLN
277
H
VAL
278
n
78
VAL
278
H
PHE
279
n
79
PHE
279
H
LEU
280
n
80
LEU
280
H
LYS
281
n
81
LYS
281
H
MET
282
n
82
MET
282
H
ASN
283
n
83
ASN
283
H
SER
284
n
84
SER
284
H
LEU
285
n
85
LEU
285
H
HIS
286
n
86
HIS
286
H
THR
287
n
87
THR
287
H
ASP
288
n
88
ASP
288
H
ASP
289
n
89
ASP
289
H
THR
290
n
90
THR
290
H
ALA
291
n
91
ALA
291
H
ARG
292
n
92
ARG
292
H
TYR
293
n
93
TYR
293
H
TYR
294
n
94
TYR
294
H
CYS
295
n
95
CYS
295
H
ALA
296
n
96
ALA
296
H
ARG
297
n
97
ARG
297
H
GLU
298
n
98
GLU
298
H
ARG
299
n
99
ARG
299
H
ASP
300
n
100
ASP
300
H
TYR
301
n
101
TYR
301
H
ARG
302
n
102
ARG
302
H
LEU
303
n
103
LEU
303
H
ASP
304
n
104
ASP
304
H
TYR
305
n
105
TYR
305
H
TRP
306
n
106
TRP
306
H
GLY
307
n
107
GLY
307
H
GLN
308
n
108
GLN
308
H
GLY
309
n
109
GLY
309
H
THR
310
n
110
THR
310
H
THR
311
n
111
THR
311
H
VAL
312
n
112
VAL
312
H
THR
313
n
113
THR
313
H
VAL
314
n
114
VAL
314
H
SER
315
n
115
SER
315
H
SER
316
n
116
SER
316
H
0.174
author_and_software_defined_assembly
PISA
2
dimeric
1610
-8
9920
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
L
O
THR
5
A
O
THR
5
L
N
ARG
24
A
N
ARG
24
L
O
VAL
19
A
O
VAL
19
L
N
ILE
75
A
N
ILE
75
L
O
GLN
70
A
O
GLN
70
L
N
SER
67
A
N
SER
67
L
O
LEU
11
A
O
LEU
11
L
N
LYS
103
A
N
LYS
103
L
O
THR
102
A
O
THR
102
L
N
TYR
86
A
N
TYR
86
L
O
SER
85
A
O
SER
85
L
N
GLN
38
A
N
GLN
38
L
O
TRP
35
A
O
TRP
35
L
N
VAL
48
A
N
VAL
48
H
O
GLN
203
B
O
GLN
3
H
N
SER
225
B
N
SER
25
H
O
LEU
218
B
O
LEU
18
H
N
MET
282
B
N
MET
82
H
O
GLN
277
B
O
GLN
77
H
N
ASP
272
B
N
ASP
72
H
O
THR
310
B
O
THR
110
H
N
TYR
293
B
N
TYR
93
H
O
ARG
292
B
O
ARG
92
H
N
GLN
239
B
N
GLN
39
H
O
VAL
234
B
O
VAL
34
H
N
ILE
251
B
N
ILE
51
H
O
MET
250
B
O
MET
50
H
N
ASP
258
B
N
ASP
58
H
O
ARG
297
B
O
ARG
97
H
N
TYR
305
B
N
TYR
105
1
L
CG
ARG
24
A
CG
ARG
24
1
Y
1
L
CD
ARG
24
A
CD
ARG
24
1
Y
1
L
NE
ARG
24
A
NE
ARG
24
1
Y
1
L
CZ
ARG
24
A
CZ
ARG
24
1
Y
1
L
NH1
ARG
24
A
NH1
ARG
24
1
Y
1
L
NH2
ARG
24
A
NH2
ARG
24
1
Y
1
L
CG
ASP
56
A
CG
ASP
56
1
Y
1
L
OD1
ASP
56
A
OD1
ASP
56
1
Y
1
L
OD2
ASP
56
A
OD2
ASP
56
1
Y
1
H
CG
ARG
299
B
CG
ARG
99
1
Y
1
H
CD
ARG
299
B
CD
ARG
99
1
Y
1
H
NE
ARG
299
B
NE
ARG
99
1
Y
1
H
CZ
ARG
299
B
CZ
ARG
99
1
Y
1
H
NH1
ARG
299
B
NH1
ARG
99
1
Y
1
H
NH2
ARG
299
B
NH2
ARG
99
1
Y
1
H
OG
SER
316
B
OG
SER
116
1
Y
1
11.86
0.90
118.30
130.16
L
L
L
CB
CG
OD1
ASP
ASP
ASP
1
1
1
N
1
10.67
1.50
110.50
121.17
L
L
L
N
CA
CB
SER
SER
SER
10
10
10
N
1
15.37
2.30
115.30
130.67
L
L
L
CA
CB
CG
LEU
LEU
LEU
11
11
11
N
1
13.20
2.00
111.60
124.80
L
L
L
CB
CA
C
ILE
ILE
ILE
21
21
21
N
1
13.40
2.00
110.90
124.30
L
L
L
CA
CB
CG2
ILE
ILE
ILE
21
21
21
N
1
-5.49
0.60
121.00
115.51
L
L
L
CB
CG
CD1
TYR
TYR
TYR
32
32
32
N
1
3.63
0.50
120.30
123.93
L
L
L
NE
CZ
NH2
ARG
ARG
ARG
61
61
61
N
1
18.40
2.20
113.40
131.80
L
L
L
CA
CB
CG
GLN
GLN
GLN
70
70
70
N
1
6.50
0.90
118.30
124.80
L
L
L
CB
CG
OD1
ASP
ASP
ASP
81
81
81
N
1
-4.75
0.60
121.00
116.25
L
L
L
CB
CG
CD2
TYR
TYR
TYR
86
86
86
N
1
4.61
0.60
121.00
125.61
L
L
L
CB
CG
CD1
TYR
TYR
TYR
86
86
86
N
1
3.81
0.60
121.00
124.81
L
L
L
CB
CG
CD2
TYR
TYR
TYR
87
87
87
N
1
-4.71
0.60
121.00
116.29
L
L
L
CB
CG
CD1
TYR
TYR
TYR
87
87
87
N
1
-15.28
1.90
110.30
95.02
L
L
L
N
CA
CB
THR
THR
THR
94
94
94
N
1
7.58
0.50
120.30
127.88
L
L
L
NE
CZ
NH1
ARG
ARG
ARG
96
96
96
N
1
-5.11
0.50
120.30
115.19
L
L
L
NE
CZ
NH2
ARG
ARG
ARG
96
96
96
N
1
-17.50
2.00
110.40
92.90
L
L
L
CB
CA
C
LYS
LYS
LYS
103
103
103
N
1
-13.50
2.10
120.10
106.60
L
L
L
CA
C
O
LYS
LYS
LYS
107
107
107
N
1
20.66
2.10
120.10
140.76
H
H
H
CA
C
O
GLN
GLN
GLN
201
201
201
N
1
19.76
2.30
115.30
135.06
H
H
H
CA
CB
CG
LEU
LEU
LEU
218
218
218
N
1
-3.07
0.50
120.30
117.23
H
H
H
NE
CZ
NH2
ARG
ARG
ARG
238
238
238
N
1
9.11
0.90
118.30
127.41
H
H
H
CB
CG
OD2
ASP
ASP
ASP
258
258
258
N
1
-16.54
2.70
111.20
94.66
H
H
H
CA
CB
OG
SER
SER
SER
265
265
265
N
1
6.66
1.10
119.40
126.06
H
H
H
NH1
CZ
NH2
ARG
ARG
ARG
266
266
266
N
1
5.60
0.50
120.30
125.90
H
H
H
NE
CZ
NH1
ARG
ARG
ARG
266
266
266
N
1
-12.25
0.50
120.30
108.05
H
H
H
NE
CZ
NH2
ARG
ARG
ARG
266
266
266
N
1
16.93
1.70
113.30
130.23
H
H
H
CA
CB
CG
MET
MET
MET
282
282
282
N
1
-19.98
2.20
113.40
93.42
H
H
H
CA
CB
CG
ASP
ASP
ASP
288
288
288
N
1
12.32
1.90
123.30
135.62
H
H
H
OD1
CG
OD2
ASP
ASP
ASP
288
288
288
N
1
-8.11
0.90
118.30
110.19
H
H
H
CB
CG
OD2
ASP
ASP
ASP
288
288
288
N
1
6.95
0.90
118.30
125.25
H
H
H
CB
CG
OD2
ASP
ASP
ASP
289
289
289
N
1
-8.05
1.10
119.40
111.35
H
H
H
NH1
CZ
NH2
ARG
ARG
ARG
292
292
292
N
1
6.97
0.50
120.30
127.27
H
H
H
NE
CZ
NH2
ARG
ARG
ARG
292
292
292
N
1
4.38
0.50
120.30
124.68
H
H
H
NE
CZ
NH1
ARG
ARG
ARG
297
297
297
N
1
-3.38
0.50
120.30
116.92
H
H
H
NE
CZ
NH2
ARG
ARG
ARG
297
297
297
N
1
-6.54
0.50
120.30
113.76
H
H
H
NE
CZ
NH2
ARG
ARG
ARG
302
302
302
N
1
10.18
0.90
118.30
128.48
H
H
H
CB
CG
OD1
ASP
ASP
ASP
304
304
304
N
1
-6.37
0.60
121.00
114.63
H
H
H
CB
CG
CD2
TYR
TYR
TYR
305
305
305
N
1
17.36
2.60
111.60
128.96
H
H
H
CB
CG
CD
GLN
GLN
GLN
308
308
308
N
1
L
THR
51
68.54
-47.10
1
L
SER
77
46.00
72.25
1
L
SER
93
66.29
-135.98
1
L
ARG
96
-144.01
46.33
1
H
PRO
214
-49.21
153.89
1
H
SER
215
70.83
-10.68
1
H
LYS
243
-109.22
-166.70
1
H
SER
284
34.03
77.76
20.51
0.174
2.01
6.0
16104
16104
1
0.0
MOLECULAR REPLACEMENT
PDB ENTRY 1VFA
2.01
6.0
141
1855
4
0
1710
0.016
0.020
0.051
0.040
0.051
0.050
1.506
1.500
2.237
2.000
2.978
2.000
4.390
3.000
0.014
0.020
0.146
0.120
0.172
0.200
0.174
0.200
0.160
0.200
2.519
3.0
18.93
20.0
12.34
15.0
15.0
21.59
2.01
17.36
1A7P
165247
0.0
0.122
1
6.2
97.8
0.356
2.00
2.11
5.2
85.9
data reduction
MOSFLM
data reduction
AGROVATA/ROTAVATA
model building
ALMN/CCP4
refinement
CCP4
data scaling
Agrovata
data scaling
ROTAVATA
phasing
CCP4
(ALMN)
FV FRAGMENT OF MOUSE MONOCLONAL ANTIBODY D1.3 (BALB/C, IGG1, K) ENGINEERED MUTANT PRO95L->SER ON VARIANT CHAIN L GLU81->ASP AND CHAIN H LEU312->VAL
1
N
N
2
N
N
3
N
N
4
N
N
4
N
N
L
PRO
80
A
PRO
80
HELX_P
L
ASP
82
A
ASP
82
5
1
3
H
THR
287
B
THR
87
HELX_P
H
ASP
289
B
ASP
89
5
2
3
disulf
2.020
L
CYS
23
A
SG
CYS
23
1_555
L
CYS
88
A
SG
CYS
88
1_555
disulf
2.006
H
CYS
222
B
SG
CYS
22
1_555
H
CYS
295
B
SG
CYS
95
1_555
IMMUNOGLOBULIN
IMMUNOGLOBULIN
L
SER
7
A
SER
7
1
L
PRO
8
A
PRO
8
-3.77
KV5C_MOUSE
UNP
1
1
P01635
DIELTQSPASLSASVGETVTITCRASGNIHNYLAWYQQKQGKSPQLLVYKAQTLADGVPSRFSGSGSGTQYSLKINSLQP
EDFGSYYCQHFWSTPPWTFGGGTKLEIKRA
HV44_MOUSE
UNP
2
1
P01820
DVLMTQTPLTLSVTIGQPASISCKSSQSLLHTDGKTYLIWLLQRPGQSPKRLIYLVSKLDSGVPDRFTGSGSGTDFTLKI
SRVEAEDLGVYYCWQGTHFPQTFGGGTKLEIKRADAAPGSTSGSGKSSEGKGQVQLQESGPGLVAPSQSLSITCTVSGFS
LTGYGVNWVRQPPGKGLEWLGMIWGDGNTDYNSALKSRLSISKDNSKSQVFLKMNSLHTDDTARYYCARERDYRLDYWGQ
GTTVTVSSTKTTPPSVYPAAAHHHHHHGAAEQKLISEEDLNGAA
1
108
1A7P
1
107
P01635
L
1
1
107
133
248
1A7P
201
316
P01820
H
2
1
116
1
GLU
conflict
VAL
3
1A7P
L
P01635
UNP
3
3
1
LYS
conflict
TYR
50
1A7P
L
P01635
UNP
50
50
1
ALA
conflict
THR
51
1A7P
L
P01635
UNP
51
51
1
GLN
conflict
THR
52
1A7P
L
P01635
UNP
52
52
1
GLU
variant
ASP
81
1A7P
L
P01635
UNP
81
81
1
PRO
deletion
1A7P
L
P01635
UNP
95
1
PRO
engineered mutation
SER
95
1A7P
L
P01635
UNP
96
95
1
TRP
conflict
ARG
96
1A7P
L
P01635
UNP
97
96
4
5
4
5
2
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
L
LEU
4
A
LEU
4
L
SER
7
A
SER
7
L
VAL
19
A
VAL
19
L
ALA
25
A
ALA
25
L
GLN
70
A
GLN
70
L
ILE
75
A
ILE
75
L
PHE
62
A
PHE
62
L
SER
67
A
SER
67
L
SER
10
A
SER
10
L
ALA
13
A
ALA
13
L
THR
102
A
THR
102
L
ILE
106
A
ILE
106
L
GLY
84
A
GLY
84
L
HIS
90
A
HIS
90
L
LEU
33
A
LEU
33
L
GLN
38
A
GLN
38
L
PRO
44
A
PRO
44
L
VAL
48
A
VAL
48
H
GLN
203
B
GLN
3
H
SER
207
B
SER
7
H
LEU
218
B
LEU
18
H
SER
225
B
SER
25
H
GLN
277
B
GLN
77
H
MET
282
B
MET
82
H
LEU
267
B
LEU
67
H
ASP
272
B
ASP
72
H
THR
310
B
THR
110
H
VAL
312
B
VAL
112
H
ALA
291
B
ALA
91
H
GLU
298
B
GLU
98
H
GLY
233
B
GLY
33
H
GLN
239
B
GLN
39
H
LEU
245
B
LEU
45
H
ILE
251
B
ILE
51
H
THR
257
B
THR
57
H
TYR
259
B
TYR
59
H
ALA
296
B
ALA
96
H
GLU
298
B
GLU
98
H
LEU
303
B
LEU
103
H
TRP
306
B
TRP
106
BINDING SITE FOR RESIDUE ACY H 400
H
ACY
400
Software
2
L
ASN
28
A
ASN
28
2
4_455
L
HIS
30
A
HIS
30
2
4_455
96
P 43 21 2