0.011073
0.000000
0.000000
0.000000
0.011073
0.000000
0.000000
0.000000
0.017591
0.00000
0.00000
0.00000
Marks, C.
Henrick, K.
Winter, G.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.00
90.00
90.00
90.307
90.307
56.847
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
To be Published
0353
X-Ray Structures of D1.3 Fv Mutants
US
Proc.Natl.Acad.Sci.USA
PNASA6
0040
0027-8424
91
1089
Bound Water Molecules and Conformational Stabilization Help Mediate an Antigen-Antibody Association
1994
UK
Nature
NATUAS
0006
0028-0836
347
483
Small Rearrangements in Structures of Fv and Fab Fragments of Antibody D1.3 On Antigen Binding
1990
10.2210/pdb1a7q/pdb
pdb_00001a7q
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
269
1
IMAGE PLATE
1992-07
MARRESEARCH
M
x-ray
1
1.5418
1.0
1.5418
11457.653
IGG1-KAPPA D1.3 FV (LIGHT CHAIN)
FV FRAGMENT
S26G, I29T, E81D, T97S
1
man
polymer
12816.200
IGG1-KAPPA D1.3 FV (HEAVY CHAIN)
FV FRAGMENT
P240L, D258A, K281E, N283D, L312V
1
man
polymer
18.015
water
47
nat
water
no
no
DIVLTQSPASLSASVGETVTITCRAGGNTHNYLAWYQQKQGKSPQLLVYYTTTLAAGVPSRFSGSGSGTQYSLKINSLQP
DDFGSYYCQHFWSTPRSFGGGTKLEI
DIVLTQSPASLSASVGETVTITCRAGGNTHNYLAWYQQKQGKSPQLLVYYTTTLAAGVPSRFSGSGSGTQYSLKINSLQP
DDFGSYYCQHFWSTPRSFGGGTKLEI
L
polypeptide(L)
no
no
QVQLQESGPGLVAPSQSLSITCTVSGFSLTGYGVNWVRQLPGKGLEWLGMIWGDGNTAYNSALKSRLSISKDNSKSQVFL
EMDSLHTDDTARYYCARERDYRLDYWGQGTTVTVSS
QVQLQESGPGLVAPSQSLSITCTVSGFSLTGYGVNWVRQLPGKGLEWLGMIWGDGNTAYNSALKSRLSISKDNSKSQVFL
EMDSLHTDDTARYYCARERDYRLDYWGQGTTVTVSS
H
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
house mouse
Mus
Escherichia
sample
10090
Mus musculus
CHAIN L, S26G, I29T, E81D, T97S, CHAIN H, P240L, D258A, K281E, N283D, L312V
562
Escherichia coli
house mouse
Mus
Escherichia
sample
10090
Mus musculus
CHAIN L, S26G, I29T, E81D, T97S, CHAIN H, P240L, D258A, K281E, N283D, L312V
562
Escherichia coli
1
2.39
48.46
database_2
software
struct_ref_seq_dif
pdbx_initial_refinement_model
repository
Initial release
Version format compliance
Version format compliance
Database references
Refinement description
Refinement description
1
0
1998-04-29
1
1
2008-03-24
1
2
2011-07-13
1
3
2022-12-21
1
4
2023-08-09
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_software.name
_struct_ref_seq_dif.details
Y
BNL
1998-03-16
REL
REL
HOH
water
THE ANTIBODY IS SECRETED INTO PERIPLASMIC SPACE. VH AND VL
DOMAINS ARE COVALENTLY LINKED AND THEY ASSOCIATE
SPONTANEOUSLY. CHAIN IDENTIFIER *L* STANDS FOR LIGHT-CHAIN
RESIDUES, *H* FOR HEAVY-CHAIN RESIDUES. THE NUMBERING
SYSTEM USED IN THIS ENTRY IS SEQUENTIAL, FROM 1 - 107 FOR
THE LIGHT CHAIN AND FROM 201 - 316 FOR THE HEAVY CHAIN.
1VFA
PDB ENTRY 1VFA
PDB
experimental model
HOH
400
3
HOH
HOH
400
L
HOH
402
3
HOH
HOH
402
L
HOH
406
3
HOH
HOH
406
L
HOH
407
3
HOH
HOH
407
L
HOH
408
3
HOH
HOH
408
L
HOH
411
3
HOH
HOH
411
L
HOH
412
3
HOH
HOH
412
L
HOH
413
3
HOH
HOH
413
L
HOH
415
3
HOH
HOH
415
L
HOH
418
3
HOH
HOH
418
L
HOH
420
3
HOH
HOH
420
L
HOH
422
3
HOH
HOH
422
L
HOH
423
3
HOH
HOH
423
L
HOH
425
3
HOH
HOH
425
L
HOH
426
3
HOH
HOH
426
L
HOH
428
3
HOH
HOH
428
L
HOH
429
3
HOH
HOH
429
L
HOH
430
3
HOH
HOH
430
L
HOH
436
3
HOH
HOH
436
L
HOH
440
3
HOH
HOH
440
L
HOH
442
3
HOH
HOH
442
L
HOH
443
3
HOH
HOH
443
L
HOH
444
3
HOH
HOH
444
L
HOH
401
3
HOH
HOH
401
H
HOH
403
3
HOH
HOH
403
H
HOH
404
3
HOH
HOH
404
H
HOH
405
3
HOH
HOH
405
H
HOH
409
3
HOH
HOH
409
H
HOH
410
3
HOH
HOH
410
H
HOH
414
3
HOH
HOH
414
H
HOH
416
3
HOH
HOH
416
H
HOH
417
3
HOH
HOH
417
H
HOH
419
3
HOH
HOH
419
H
HOH
421
3
HOH
HOH
421
H
HOH
424
3
HOH
HOH
424
H
HOH
427
3
HOH
HOH
427
H
HOH
431
3
HOH
HOH
431
H
HOH
432
3
HOH
HOH
432
H
HOH
433
3
HOH
HOH
433
H
HOH
434
3
HOH
HOH
434
H
HOH
435
3
HOH
HOH
435
H
HOH
437
3
HOH
HOH
437
H
HOH
438
3
HOH
HOH
438
H
HOH
439
3
HOH
HOH
439
H
HOH
441
3
HOH
HOH
441
H
HOH
445
3
HOH
HOH
445
H
HOH
446
3
HOH
HOH
446
H
ASP
1
n
1
ASP
1
L
ILE
2
n
2
ILE
2
L
VAL
3
n
3
VAL
3
L
LEU
4
n
4
LEU
4
L
THR
5
n
5
THR
5
L
GLN
6
n
6
GLN
6
L
SER
7
n
7
SER
7
L
PRO
8
n
8
PRO
8
L
ALA
9
n
9
ALA
9
L
SER
10
n
10
SER
10
L
LEU
11
n
11
LEU
11
L
SER
12
n
12
SER
12
L
ALA
13
n
13
ALA
13
L
SER
14
n
14
SER
14
L
VAL
15
n
15
VAL
15
L
GLY
16
n
16
GLY
16
L
GLU
17
n
17
GLU
17
L
THR
18
n
18
THR
18
L
VAL
19
n
19
VAL
19
L
THR
20
n
20
THR
20
L
ILE
21
n
21
ILE
21
L
THR
22
n
22
THR
22
L
CYS
23
n
23
CYS
23
L
ARG
24
n
24
ARG
24
L
ALA
25
n
25
ALA
25
L
GLY
26
n
26
GLY
26
L
GLY
27
n
27
GLY
27
L
ASN
28
n
28
ASN
28
L
THR
29
n
29
THR
29
L
HIS
30
n
30
HIS
30
L
ASN
31
n
31
ASN
31
L
TYR
32
n
32
TYR
32
L
LEU
33
n
33
LEU
33
L
ALA
34
n
34
ALA
34
L
TRP
35
n
35
TRP
35
L
TYR
36
n
36
TYR
36
L
GLN
37
n
37
GLN
37
L
GLN
38
n
38
GLN
38
L
LYS
39
n
39
LYS
39
L
GLN
40
n
40
GLN
40
L
GLY
41
n
41
GLY
41
L
LYS
42
n
42
LYS
42
L
SER
43
n
43
SER
43
L
PRO
44
n
44
PRO
44
L
GLN
45
n
45
GLN
45
L
LEU
46
n
46
LEU
46
L
LEU
47
n
47
LEU
47
L
VAL
48
n
48
VAL
48
L
TYR
49
n
49
TYR
49
L
TYR
50
n
50
TYR
50
L
THR
51
n
51
THR
51
L
THR
52
n
52
THR
52
L
THR
53
n
53
THR
53
L
LEU
54
n
54
LEU
54
L
ALA
55
n
55
ALA
55
L
ALA
56
n
56
ALA
56
L
GLY
57
n
57
GLY
57
L
VAL
58
n
58
VAL
58
L
PRO
59
n
59
PRO
59
L
SER
60
n
60
SER
60
L
ARG
61
n
61
ARG
61
L
PHE
62
n
62
PHE
62
L
SER
63
n
63
SER
63
L
GLY
64
n
64
GLY
64
L
SER
65
n
65
SER
65
L
GLY
66
n
66
GLY
66
L
SER
67
n
67
SER
67
L
GLY
68
n
68
GLY
68
L
THR
69
n
69
THR
69
L
GLN
70
n
70
GLN
70
L
TYR
71
n
71
TYR
71
L
SER
72
n
72
SER
72
L
LEU
73
n
73
LEU
73
L
LYS
74
n
74
LYS
74
L
ILE
75
n
75
ILE
75
L
ASN
76
n
76
ASN
76
L
SER
77
n
77
SER
77
L
LEU
78
n
78
LEU
78
L
GLN
79
n
79
GLN
79
L
PRO
80
n
80
PRO
80
L
ASP
81
n
81
ASP
81
L
ASP
82
n
82
ASP
82
L
PHE
83
n
83
PHE
83
L
GLY
84
n
84
GLY
84
L
SER
85
n
85
SER
85
L
TYR
86
n
86
TYR
86
L
TYR
87
n
87
TYR
87
L
CYS
88
n
88
CYS
88
L
GLN
89
n
89
GLN
89
L
HIS
90
n
90
HIS
90
L
PHE
91
n
91
PHE
91
L
TRP
92
n
92
TRP
92
L
SER
93
n
93
SER
93
L
THR
94
n
94
THR
94
L
PRO
95
n
95
PRO
95
L
ARG
96
n
96
ARG
96
L
SER
97
n
97
SER
97
L
PHE
98
n
98
PHE
98
L
GLY
99
n
99
GLY
99
L
GLY
100
n
100
GLY
100
L
GLY
101
n
101
GLY
101
L
THR
102
n
102
THR
102
L
LYS
103
n
103
LYS
103
L
LEU
104
n
104
LEU
104
L
GLU
105
n
105
GLU
105
L
ILE
106
n
106
ILE
106
L
GLN
201
n
1
GLN
201
H
VAL
202
n
2
VAL
202
H
GLN
203
n
3
GLN
203
H
LEU
204
n
4
LEU
204
H
GLN
205
n
5
GLN
205
H
GLU
206
n
6
GLU
206
H
SER
207
n
7
SER
207
H
GLY
208
n
8
GLY
208
H
PRO
209
n
9
PRO
209
H
GLY
210
n
10
GLY
210
H
LEU
211
n
11
LEU
211
H
VAL
212
n
12
VAL
212
H
ALA
213
n
13
ALA
213
H
PRO
214
n
14
PRO
214
H
SER
215
n
15
SER
215
H
GLN
216
n
16
GLN
216
H
SER
217
n
17
SER
217
H
LEU
218
n
18
LEU
218
H
SER
219
n
19
SER
219
H
ILE
220
n
20
ILE
220
H
THR
221
n
21
THR
221
H
CYS
222
n
22
CYS
222
H
THR
223
n
23
THR
223
H
VAL
224
n
24
VAL
224
H
SER
225
n
25
SER
225
H
GLY
226
n
26
GLY
226
H
PHE
227
n
27
PHE
227
H
SER
228
n
28
SER
228
H
LEU
229
n
29
LEU
229
H
THR
230
n
30
THR
230
H
GLY
231
n
31
GLY
231
H
TYR
232
n
32
TYR
232
H
GLY
233
n
33
GLY
233
H
VAL
234
n
34
VAL
234
H
ASN
235
n
35
ASN
235
H
TRP
236
n
36
TRP
236
H
VAL
237
n
37
VAL
237
H
ARG
238
n
38
ARG
238
H
GLN
239
n
39
GLN
239
H
LEU
240
n
40
LEU
240
H
PRO
241
n
41
PRO
241
H
GLY
242
n
42
GLY
242
H
LYS
243
n
43
LYS
243
H
GLY
244
n
44
GLY
244
H
LEU
245
n
45
LEU
245
H
GLU
246
n
46
GLU
246
H
TRP
247
n
47
TRP
247
H
LEU
248
n
48
LEU
248
H
GLY
249
n
49
GLY
249
H
MET
250
n
50
MET
250
H
ILE
251
n
51
ILE
251
H
TRP
252
n
52
TRP
252
H
GLY
253
n
53
GLY
253
H
ASP
254
n
54
ASP
254
H
GLY
255
n
55
GLY
255
H
ASN
256
n
56
ASN
256
H
THR
257
n
57
THR
257
H
ALA
258
n
58
ALA
258
H
TYR
259
n
59
TYR
259
H
ASN
260
n
60
ASN
260
H
SER
261
n
61
SER
261
H
ALA
262
n
62
ALA
262
H
LEU
263
n
63
LEU
263
H
LYS
264
n
64
LYS
264
H
SER
265
n
65
SER
265
H
ARG
266
n
66
ARG
266
H
LEU
267
n
67
LEU
267
H
SER
268
n
68
SER
268
H
ILE
269
n
69
ILE
269
H
SER
270
n
70
SER
270
H
LYS
271
n
71
LYS
271
H
ASP
272
n
72
ASP
272
H
ASN
273
n
73
ASN
273
H
SER
274
n
74
SER
274
H
LYS
275
n
75
LYS
275
H
SER
276
n
76
SER
276
H
GLN
277
n
77
GLN
277
H
VAL
278
n
78
VAL
278
H
PHE
279
n
79
PHE
279
H
LEU
280
n
80
LEU
280
H
GLU
281
n
81
GLU
281
H
MET
282
n
82
MET
282
H
ASP
283
n
83
ASP
283
H
SER
284
n
84
SER
284
H
LEU
285
n
85
LEU
285
H
HIS
286
n
86
HIS
286
H
THR
287
n
87
THR
287
H
ASP
288
n
88
ASP
288
H
ASP
289
n
89
ASP
289
H
THR
290
n
90
THR
290
H
ALA
291
n
91
ALA
291
H
ARG
292
n
92
ARG
292
H
TYR
293
n
93
TYR
293
H
TYR
294
n
94
TYR
294
H
CYS
295
n
95
CYS
295
H
ALA
296
n
96
ALA
296
H
ARG
297
n
97
ARG
297
H
GLU
298
n
98
GLU
298
H
ARG
299
n
99
ARG
299
H
ASP
300
n
100
ASP
300
H
TYR
301
n
101
TYR
301
H
ARG
302
n
102
ARG
302
H
LEU
303
n
103
LEU
303
H
ASP
304
n
104
ASP
304
H
TYR
305
n
105
TYR
305
H
TRP
306
n
106
TRP
306
H
GLY
307
n
107
GLY
307
H
GLN
308
n
108
GLN
308
H
GLY
309
n
109
GLY
309
H
THR
310
n
110
THR
310
H
THR
311
n
111
THR
311
H
VAL
312
n
112
VAL
312
H
THR
313
n
113
THR
313
H
VAL
314
n
114
VAL
314
H
SER
315
n
115
SER
315
H
SER
316
n
116
SER
316
H
0.178
author_and_software_defined_assembly
PISA
2
dimeric
1660
-10
9770
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
L
O
THR
5
A
O
THR
5
L
N
ARG
24
A
N
ARG
24
L
O
VAL
19
A
O
VAL
19
L
N
ILE
75
A
N
ILE
75
L
O
GLN
70
A
O
GLN
70
L
N
SER
67
A
N
SER
67
L
O
LEU
11
A
O
LEU
11
L
N
LYS
103
A
N
LYS
103
L
O
THR
102
A
O
THR
102
L
N
TYR
86
A
N
TYR
86
L
O
SER
85
A
O
SER
85
L
N
GLN
38
A
N
GLN
38
L
O
TRP
35
A
O
TRP
35
L
N
VAL
48
A
N
VAL
48
H
O
GLN
203
B
O
GLN
3
H
N
SER
225
B
N
SER
25
H
O
LEU
218
B
O
LEU
18
H
N
MET
282
B
N
MET
82
H
O
GLN
277
B
O
GLN
77
H
N
ASP
272
B
N
ASP
72
H
O
THR
310
B
O
THR
110
H
N
TYR
293
B
N
TYR
93
H
O
ARG
292
B
O
ARG
92
H
N
GLN
239
B
N
GLN
39
H
O
VAL
234
B
O
VAL
34
H
N
ILE
251
B
N
ILE
51
H
O
MET
250
B
O
MET
50
H
N
ALA
258
B
N
ALA
58
H
O
ARG
297
B
O
ARG
97
H
N
TYR
305
B
N
TYR
105
1
L
NE
ARG
24
A
NE
ARG
24
1
Y
1
L
CZ
ARG
24
A
CZ
ARG
24
1
Y
1
L
NH1
ARG
24
A
NH1
ARG
24
1
Y
1
L
NH2
ARG
24
A
NH2
ARG
24
1
Y
1
L
NZ
LYS
39
A
NZ
LYS
39
1
Y
1
L
CG
LYS
42
A
CG
LYS
42
1
Y
1
L
CD
LYS
42
A
CD
LYS
42
1
Y
1
L
CE
LYS
42
A
CE
LYS
42
1
Y
1
L
NZ
LYS
42
A
NZ
LYS
42
1
Y
1
L
CB
SER
60
A
CB
SER
60
1
Y
1
L
OG
SER
60
A
OG
SER
60
1
Y
1
L
CZ
ARG
61
A
CZ
ARG
61
1
Y
1
L
NH1
ARG
61
A
NH1
ARG
61
1
Y
1
L
NH2
ARG
61
A
NH2
ARG
61
1
Y
1
L
CD
LYS
103
A
CD
LYS
103
1
Y
1
L
CE
LYS
103
A
CE
LYS
103
1
Y
1
L
NZ
LYS
103
A
NZ
LYS
103
1
Y
1
H
CD
GLN
201
B
CD
GLN
1
1
Y
1
H
OE1
GLN
201
B
OE1
GLN
1
1
Y
1
H
NE2
GLN
201
B
NE2
GLN
1
1
Y
1
H
OG
SER
217
B
OG
SER
17
1
Y
1
H
CG
LYS
275
B
CG
LYS
75
1
Y
1
H
CD
LYS
275
B
CD
LYS
75
1
Y
1
H
CE
LYS
275
B
CE
LYS
75
1
Y
1
H
NZ
LYS
275
B
NZ
LYS
75
1
Y
1
H
OG
SER
284
B
OG
SER
84
1
Y
1
H
O
SER
316
B
O
SER
116
1
Y
1
5.72
0.90
118.30
124.02
L
L
L
CB
CG
OD1
ASP
ASP
ASP
1
1
1
N
1
-8.23
0.90
118.30
110.07
L
L
L
CB
CG
OD2
ASP
ASP
ASP
1
1
1
N
1
10.80
1.50
110.90
121.70
L
L
L
CA
CB
CG2
VAL
VAL
VAL
3
3
3
N
1
10.42
1.60
122.70
133.12
L
L
L
O
C
N
LEU
LEU
THR
4
4
5
Y
1
-14.68
1.90
110.10
95.42
L
L
L
CB
CA
C
SER
SER
SER
10
10
10
N
1
15.05
2.30
115.30
130.35
L
L
L
CA
CB
CG
LEU
LEU
LEU
11
11
11
N
1
-4.07
0.60
121.00
116.93
L
L
L
CB
CG
CD2
TYR
TYR
TYR
50
50
50
N
1
-12.60
2.10
109.00
96.40
L
L
L
CA
CB
OG1
THR
THR
THR
53
53
53
N
1
4.10
0.60
121.00
125.10
L
L
L
CB
CG
CD1
TYR
TYR
TYR
71
71
71
N
1
8.82
0.90
118.30
127.12
L
L
L
CB
CG
OD1
ASP
ASP
ASP
82
82
82
N
1
15.00
2.00
110.40
125.40
L
L
L
CB
CA
C
PHE
PHE
PHE
83
83
83
N
1
-4.26
0.60
121.00
116.74
L
L
L
CB
CG
CD2
TYR
TYR
TYR
86
86
86
N
1
6.38
0.50
120.30
126.68
L
L
L
NE
CZ
NH1
ARG
ARG
ARG
96
96
96
N
1
-7.03
0.50
120.30
113.27
L
L
L
NE
CZ
NH2
ARG
ARG
ARG
96
96
96
N
1
-15.39
1.80
110.60
95.21
H
H
H
N
CA
CB
GLN
GLN
GLN
201
201
201
N
1
-11.86
1.60
122.70
110.84
H
H
H
O
C
N
GLN
GLN
VAL
201
201
202
Y
1
-9.64
1.60
110.90
101.26
H
H
H
CG1
CB
CG2
VAL
VAL
VAL
212
212
212
N
1
-8.65
1.40
110.10
101.45
H
H
H
N
CA
CB
ALA
ALA
ALA
213
213
213
N
1
25.71
2.30
115.30
141.01
H
H
H
CA
CB
CG
LEU
LEU
LEU
218
218
218
N
1
12.60
2.10
120.10
132.70
H
H
H
CA
C
O
PHE
PHE
PHE
227
227
227
N
1
-5.72
0.60
121.00
115.28
H
H
H
CB
CG
CD2
TYR
TYR
TYR
232
232
232
N
1
4.33
0.60
121.00
125.33
H
H
H
CB
CG
CD1
TYR
TYR
TYR
232
232
232
N
1
5.07
0.50
120.30
125.37
H
H
H
NE
CZ
NH1
ARG
ARG
ARG
238
238
238
N
1
-6.72
0.50
120.30
113.58
H
H
H
NE
CZ
NH2
ARG
ARG
ARG
238
238
238
N
1
15.22
2.30
115.30
130.52
H
H
H
CA
CB
CG
LEU
LEU
LEU
240
240
240
N
1
-6.50
0.90
118.30
111.80
H
H
H
CB
CG
OD2
ASP
ASP
ASP
254
254
254
N
1
-4.92
0.60
121.00
116.08
H
H
H
CB
CG
CD1
TYR
TYR
TYR
259
259
259
N
1
-12.29
2.00
110.40
98.11
H
H
H
N
CA
CB
LEU
LEU
LEU
263
263
263
N
1
7.58
0.50
120.30
127.88
H
H
H
NE
CZ
NH1
ARG
ARG
ARG
266
266
266
N
1
-10.15
0.50
120.30
110.15
H
H
H
NE
CZ
NH2
ARG
ARG
ARG
266
266
266
N
1
-17.40
1.90
110.10
92.70
H
H
H
CB
CA
C
SER
SER
SER
268
268
268
N
1
19.97
1.50
110.50
130.47
H
H
H
N
CA
CB
SER
SER
SER
268
268
268
N
1
-8.65
0.90
118.30
109.65
H
H
H
CB
CG
OD2
ASP
ASP
ASP
272
272
272
N
1
7.82
1.20
123.30
131.12
H
H
H
OE1
CD
OE2
GLU
GLU
GLU
281
281
281
N
1
-7.55
0.90
118.30
110.75
H
H
H
CB
CG
OD2
ASP
ASP
ASP
283
283
283
N
1
-15.08
1.50
110.50
95.42
H
H
H
N
CA
CB
SER
SER
SER
284
284
284
N
1
-3.61
0.50
120.30
116.69
H
H
H
NE
CZ
NH2
ARG
ARG
ARG
292
292
292
N
1
-3.85
0.60
121.00
117.15
H
H
H
CB
CG
CD2
TYR
TYR
TYR
294
294
294
N
1
-10.25
1.40
123.60
113.35
H
H
H
CD
NE
CZ
ARG
ARG
ARG
299
299
299
N
1
7.22
1.10
119.40
126.62
H
H
H
NH1
CZ
NH2
ARG
ARG
ARG
299
299
299
N
1
-5.16
0.50
120.30
115.14
H
H
H
NE
CZ
NH2
ARG
ARG
ARG
299
299
299
N
1
6.90
0.90
118.30
125.20
H
H
H
CB
CG
OD2
ASP
ASP
ASP
300
300
300
N
1
-3.62
0.60
121.00
117.38
H
H
H
CB
CG
CD1
TYR
TYR
TYR
301
301
301
N
1
-8.66
1.40
123.60
114.94
H
H
H
CD
NE
CZ
ARG
ARG
ARG
302
302
302
N
1
9.76
0.50
120.30
130.06
H
H
H
NE
CZ
NH1
ARG
ARG
ARG
302
302
302
N
1
-11.29
0.50
120.30
109.01
H
H
H
NE
CZ
NH2
ARG
ARG
ARG
302
302
302
N
1
12.02
0.90
118.30
130.32
H
H
H
CB
CG
OD1
ASP
ASP
ASP
304
304
304
N
1
-7.31
0.90
118.30
110.99
H
H
H
CB
CG
OD2
ASP
ASP
ASP
304
304
304
N
1
-5.98
0.60
121.00
115.02
H
H
H
CB
CG
CD1
TYR
TYR
TYR
305
305
305
N
1
-9.15
1.10
121.20
112.05
H
H
H
CE3
CZ3
CH2
TRP
TRP
TRP
306
306
306
N
1
-11.50
1.50
110.50
99.00
H
H
H
N
CA
CB
SER
SER
SER
315
315
315
N
1
L
THR
51
67.17
-50.68
1
L
SER
77
39.11
79.01
1
L
SER
93
55.09
-147.92
1
H
SER
215
67.84
-2.68
1
H
LYS
243
-115.31
-165.95
21.70
0.178
2.0
6.0
15836
15836
1
0.0
MOLECULAR REPLACEMENT
PDB ENTRY 1VFA
2.0
6.0
47
1728
0
0
1681
0.019
0.020
0.055
0.040
0.058
0.050
1.506
1.500
2.237
2.000
2.978
2.000
4.390
3.000
0.015
0.020
0.153
0.120
0.161
0.200
0.157
0.200
0.146
0.200
2.519
3.0
18.93
20.0
12.34
15.0
15.0
25.08
2.00
13.68
1A7Q
134765
0.0
0.097
1
4.8
97.8
0.3
2.00
2.05
3.7
79.7
data reduction
MOSFLM
data reduction
AGROVATA/ROTAVATA
model building
ALMN/CCP4
refinement
CCP4
data scaling
Agrovata
data scaling
ROTAVATA
phasing
CCP4
(ALMN)
FV FRAGMENT OF MOUSE MONOCLONAL ANTIBODY D1.3 (BALB/C, IGG1, K) HIGH AFFINITY EXPRESSED VARIANT CONTAINING SER26L->GLY, ILE29L->THR, GLU81L->ASP, THR97L->SER, PRO240H->LEU, ASP258H->ALA, LYS281H->GLU, ASN283H->ASP AND LEU312H->VAL
1
N
N
2
N
N
3
N
N
3
N
N
L
PRO
80
A
PRO
80
HELX_P
L
ASP
82
A
ASP
82
5
1
3
H
LYS
264
B
LYS
64
HELX_P
H
ARG
266
B
ARG
66
5
2
3
H
THR
287
B
THR
87
HELX_P
H
ASP
289
B
ASP
89
5
3
3
disulf
1.997
L
CYS
23
A
SG
CYS
23
1_555
L
CYS
88
A
SG
CYS
88
1_555
disulf
2.006
H
CYS
222
B
SG
CYS
22
1_555
H
CYS
295
B
SG
CYS
95
1_555
IMMUNOGLOBULIN
IMMUNOGLOBULIN
L
SER
7
A
SER
7
1
L
PRO
8
A
PRO
8
-0.51
L
THR
94
A
THR
94
1
L
PRO
95
A
PRO
95
-0.38
AAB30177
GB
1
1
545862
DIELTQSPASLSASVGETVTITCRASGNIHNYLAWYQQKQGKSPQLLVYKAQTLADGVPSRFSGSGSGTQYSLKINSLQP
EDFGSYYCQHFWSTPPWTFGGGTKLEIKRA
AAA69766
GB
2
1
896294
DVLMTQTPLTLSVTIGQPASISCKSSQSLLHTDGKTYLIWLLQRPGQSPKRLIYLVSKLDSGVPDRFTGSGSGTDFTLKI
SRVEAEDLGVYYCWQGTHFPQTFGGGTKLEIKRADAAPGSTSGSGKSSEGKGQVQLQESGPGLVAPSQSLSITCTVSGFS
LTGYGVNWVRQPPGKGLEWLGMIWGDGNTDYNSALKSRLSISKDNSKSQVFLKMNSLHTDDTARYYCARERDYRLDYWGQ
GTTVTVSSTKTTPPSVYPAAAHHHHHHGAAEQKLISEEDLNGAA
1
107
1A7Q
1
106
545862
L
1
1
106
133
248
1A7Q
201
316
896294
H
2
1
116
1
GLU
conflict
VAL
3
1A7Q
L
545862
GB
3
3
1
SER
variant
GLY
26
1A7Q
L
545862
GB
26
26
1
ILE
variant
THR
29
1A7Q
L
545862
GB
29
29
1
LYS
conflict
TYR
50
1A7Q
L
545862
GB
50
50
1
ALA
conflict
THR
51
1A7Q
L
545862
GB
51
51
1
GLN
conflict
THR
52
1A7Q
L
545862
GB
52
52
1
ASP
conflict
ALA
56
1A7Q
L
545862
GB
56
56
1
GLU
variant
ASP
81
1A7Q
L
545862
GB
81
81
1
PRO
deletion
1A7Q
L
545862
GB
95
1
TRP
conflict
ARG
96
1A7Q
L
545862
GB
97
96
1
THR
variant
SER
97
1A7Q
L
545862
GB
98
97
2
PRO
variant
LEU
240
1A7Q
H
896294
GB
172
40
2
ASP
variant
ALA
258
1A7Q
H
896294
GB
190
58
2
LYS
variant
GLU
281
1A7Q
H
896294
GB
213
81
2
ASN
variant
ASP
283
1A7Q
H
896294
GB
215
83
4
5
4
5
2
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
L
LEU
4
A
LEU
4
L
SER
7
A
SER
7
L
VAL
19
A
VAL
19
L
ALA
25
A
ALA
25
L
GLN
70
A
GLN
70
L
ILE
75
A
ILE
75
L
PHE
62
A
PHE
62
L
SER
67
A
SER
67
L
SER
10
A
SER
10
L
SER
12
A
SER
12
L
THR
102
A
THR
102
L
GLU
105
A
GLU
105
L
GLY
84
A
GLY
84
L
HIS
90
A
HIS
90
L
LEU
33
A
LEU
33
L
GLN
38
A
GLN
38
L
GLN
45
A
GLN
45
L
VAL
48
A
VAL
48
H
GLN
203
B
GLN
3
H
SER
207
B
SER
7
H
LEU
218
B
LEU
18
H
SER
225
B
SER
25
H
GLN
277
B
GLN
77
H
MET
282
B
MET
82
H
LEU
267
B
LEU
67
H
ASP
272
B
ASP
72
H
THR
310
B
THR
110
H
VAL
312
B
VAL
112
H
ALA
291
B
ALA
91
H
GLU
298
B
GLU
98
H
GLY
233
B
GLY
33
H
LEU
240
B
LEU
40
H
LEU
245
B
LEU
45
H
ILE
251
B
ILE
51
H
THR
257
B
THR
57
H
TYR
259
B
TYR
59
H
ALA
296
B
ALA
96
H
GLU
298
B
GLU
98
H
LEU
303
B
LEU
103
H
TRP
306
B
TRP
106
96
P 43 21 2