0.011081 0.000000 0.000000 0.000000 0.011081 0.000000 0.000000 0.000000 0.017783 0.00000 0.00000 0.00000 Marks, C. Henrick, K. Winter, G. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 8 90.00 90.00 90.00 90.245 90.245 56.235 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking To be Published 0353 X-Ray Structures of D1.3 Fv Mutants US Proc.Natl.Acad.Sci.USA PNASA6 0040 0027-8424 91 1089 Bound Water Molecules and Conformational Stabilization Help Mediate an Antigen-Antibody Association 1994 UK Nature NATUAS 0006 0028-0836 347 483 Small Rearrangements in Structures of Fv and Fab Fragments of Antibody D1.3 On Antigen Binding 1990 10.2210/pdb1a7r/pdb pdb_00001a7r 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 269 1 IMAGE PLATE 1992-12 MARRESEARCH M x-ray 1 1.5418 1.0 1.5418 11686.950 IGG1-KAPPA D1.3 FV (LIGHT CHAIN) FV FRAGMENT E81D 1 man polymer 12857.275 IGG1-KAPPA D1.3 FV (HEAVY CHAIN) FV FRAGMENT 1 man polymer 18.015 water 111 nat water no no DIVLTQSPASLSASVGETVTITCRASGNIHNYLAWYQQKQGKSPQLLVYYTTTLADGVPSRFSGSGSGTQYSLKINSLQP DDFGSYYCQHFWSTPRTFGGGTKLEIK DIVLTQSPASLSASVGETVTITCRASGNIHNYLAWYQQKQGKSPQLLVYYTTTLADGVPSRFSGSGSGTQYSLKINSLQP DDFGSYYCQHFWSTPRTFGGGTKLEIK L polypeptide(L) no no QVQLQESGPGLVAPSQSLSITCTVSGFSLTGYGVNWVRQPPGKGLEWLGMIWGDGNTDYNSALKSRLSISKDNSKSQVFL KMNSLHTDDTARYYCARERDYRLDYWGQGTTLTVSS QVQLQESGPGLVAPSQSLSITCTVSGFSLTGYGVNWVRQPPGKGLEWLGMIWGDGNTDYNSALKSRLSISKDNSKSQVFL KMNSLHTDDTARYYCARERDYRLDYWGQGTTLTVSS H polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n house mouse Mus Escherichia sample 10090 Mus musculus CHAIN L, E81D 562 Escherichia coli house mouse Mus Escherichia sample 10090 Mus musculus CHAIN L, E81D 562 Escherichia coli 1 2.33 47.25 database_2 pdbx_initial_refinement_model software struct_ref_seq_dif repository Initial release Version format compliance Version format compliance Database references Refinement description 1 0 1998-04-29 1 1 2008-03-25 1 2 2011-07-13 1 3 2023-08-02 _database_2.pdbx_DOI _database_2.pdbx_database_accession _software.name _struct_ref_seq_dif.details Y BNL 1998-03-16 REL REL HOH water THE ANTIBODY IS SECRETED INTO PERIPLASMIC SPACE. VH AND VL DOMAINS ARE COVALENTLY LINKED AND THEY ASSOCIATE SPONTANEOUSLY. CHAIN IDENTIFIER *L* STANDS FOR LIGHT-CHAIN RESIDUES, *H* FOR HEAVY-CHAIN RESIDUES. THE NUMBERING SYSTEM USED IN THIS ENTRY IS SEQUENTIAL, FROM 1 - 107 FOR THE LIGHT CHAIN AND FROM 201 - 316 FOR THE HEAVY CHAIN. 1VFA PDB ENTRY 1VFA PDB experimental model HOH 400 3 HOH HOH 400 L HOH 402 3 HOH HOH 402 L HOH 406 3 HOH HOH 406 L HOH 408 3 HOH HOH 408 L HOH 409 3 HOH HOH 409 L HOH 410 3 HOH HOH 410 L HOH 411 3 HOH HOH 411 L HOH 413 3 HOH HOH 413 L HOH 415 3 HOH HOH 415 L HOH 416 3 HOH HOH 416 L HOH 417 3 HOH HOH 417 L HOH 421 3 HOH HOH 421 L HOH 422 3 HOH HOH 422 L HOH 423 3 HOH HOH 423 L HOH 424 3 HOH HOH 424 L HOH 425 3 HOH HOH 425 L HOH 426 3 HOH HOH 426 L HOH 427 3 HOH HOH 427 L HOH 428 3 HOH HOH 428 L HOH 429 3 HOH HOH 429 L HOH 430 3 HOH HOH 430 L HOH 431 3 HOH HOH 431 L HOH 432 3 HOH HOH 432 L HOH 433 3 HOH HOH 433 L HOH 434 3 HOH HOH 434 L HOH 435 3 HOH HOH 435 L HOH 436 3 HOH HOH 436 L HOH 437 3 HOH HOH 437 L HOH 440 3 HOH HOH 440 L HOH 441 3 HOH HOH 441 L HOH 442 3 HOH HOH 442 L HOH 443 3 HOH HOH 443 L HOH 447 3 HOH HOH 447 L HOH 448 3 HOH HOH 448 L HOH 459 3 HOH HOH 459 L HOH 472 3 HOH HOH 472 L HOH 474 3 HOH HOH 474 L HOH 479 3 HOH HOH 479 L HOH 480 3 HOH HOH 480 L HOH 484 3 HOH HOH 484 L HOH 485 3 HOH HOH 485 L HOH 486 3 HOH HOH 486 L HOH 487 3 HOH HOH 487 L HOH 491 3 HOH HOH 491 L HOH 492 3 HOH HOH 492 L HOH 494 3 HOH HOH 494 L HOH 495 3 HOH HOH 495 L HOH 496 3 HOH HOH 496 L HOH 499 3 HOH HOH 499 L HOH 502 3 HOH HOH 502 L HOH 503 3 HOH HOH 503 L HOH 504 3 HOH HOH 504 L HOH 506 3 HOH HOH 506 L HOH 507 3 HOH HOH 507 L HOH 508 3 HOH HOH 508 L HOH 509 3 HOH HOH 509 L HOH 401 3 HOH HOH 401 H HOH 403 3 HOH HOH 403 H HOH 404 3 HOH HOH 404 H HOH 405 3 HOH HOH 405 H HOH 407 3 HOH HOH 407 H HOH 412 3 HOH HOH 412 H HOH 414 3 HOH HOH 414 H HOH 418 3 HOH HOH 418 H HOH 419 3 HOH HOH 419 H HOH 420 3 HOH HOH 420 H HOH 438 3 HOH HOH 438 H HOH 439 3 HOH HOH 439 H HOH 444 3 HOH HOH 444 H HOH 445 3 HOH HOH 445 H HOH 446 3 HOH HOH 446 H HOH 449 3 HOH HOH 449 H HOH 450 3 HOH HOH 450 H HOH 451 3 HOH HOH 451 H HOH 452 3 HOH HOH 452 H HOH 453 3 HOH HOH 453 H HOH 454 3 HOH HOH 454 H HOH 455 3 HOH HOH 455 H HOH 456 3 HOH HOH 456 H HOH 457 3 HOH HOH 457 H HOH 458 3 HOH HOH 458 H HOH 460 3 HOH HOH 460 H HOH 461 3 HOH HOH 461 H HOH 462 3 HOH HOH 462 H HOH 463 3 HOH HOH 463 H HOH 464 3 HOH HOH 464 H HOH 465 3 HOH HOH 465 H HOH 466 3 HOH HOH 466 H HOH 467 3 HOH HOH 467 H HOH 468 3 HOH HOH 468 H HOH 469 3 HOH HOH 469 H HOH 470 3 HOH HOH 470 H HOH 471 3 HOH HOH 471 H HOH 473 3 HOH HOH 473 H HOH 475 3 HOH HOH 475 H HOH 476 3 HOH HOH 476 H HOH 477 3 HOH HOH 477 H HOH 478 3 HOH HOH 478 H HOH 481 3 HOH HOH 481 H HOH 482 3 HOH HOH 482 H HOH 483 3 HOH HOH 483 H HOH 488 3 HOH HOH 488 H HOH 489 3 HOH HOH 489 H HOH 490 3 HOH HOH 490 H HOH 493 3 HOH HOH 493 H HOH 497 3 HOH HOH 497 H HOH 498 3 HOH HOH 498 H HOH 500 3 HOH HOH 500 H HOH 501 3 HOH HOH 501 H HOH 505 3 HOH HOH 505 H HOH 510 3 HOH HOH 510 H ASP 1 n 1 ASP 1 L ILE 2 n 2 ILE 2 L VAL 3 n 3 VAL 3 L LEU 4 n 4 LEU 4 L THR 5 n 5 THR 5 L GLN 6 n 6 GLN 6 L SER 7 n 7 SER 7 L PRO 8 n 8 PRO 8 L ALA 9 n 9 ALA 9 L SER 10 n 10 SER 10 L LEU 11 n 11 LEU 11 L SER 12 n 12 SER 12 L ALA 13 n 13 ALA 13 L SER 14 n 14 SER 14 L VAL 15 n 15 VAL 15 L GLY 16 n 16 GLY 16 L GLU 17 n 17 GLU 17 L THR 18 n 18 THR 18 L VAL 19 n 19 VAL 19 L THR 20 n 20 THR 20 L ILE 21 n 21 ILE 21 L THR 22 n 22 THR 22 L CYS 23 n 23 CYS 23 L ARG 24 n 24 ARG 24 L ALA 25 n 25 ALA 25 L SER 26 n 26 SER 26 L GLY 27 n 27 GLY 27 L ASN 28 n 28 ASN 28 L ILE 29 n 29 ILE 29 L HIS 30 n 30 HIS 30 L ASN 31 n 31 ASN 31 L TYR 32 n 32 TYR 32 L LEU 33 n 33 LEU 33 L ALA 34 n 34 ALA 34 L TRP 35 n 35 TRP 35 L TYR 36 n 36 TYR 36 L GLN 37 n 37 GLN 37 L GLN 38 n 38 GLN 38 L LYS 39 n 39 LYS 39 L GLN 40 n 40 GLN 40 L GLY 41 n 41 GLY 41 L LYS 42 n 42 LYS 42 L SER 43 n 43 SER 43 L PRO 44 n 44 PRO 44 L GLN 45 n 45 GLN 45 L LEU 46 n 46 LEU 46 L LEU 47 n 47 LEU 47 L VAL 48 n 48 VAL 48 L TYR 49 n 49 TYR 49 L TYR 50 n 50 TYR 50 L THR 51 n 51 THR 51 L THR 52 n 52 THR 52 L THR 53 n 53 THR 53 L LEU 54 n 54 LEU 54 L ALA 55 n 55 ALA 55 L ASP 56 n 56 ASP 56 L GLY 57 n 57 GLY 57 L VAL 58 n 58 VAL 58 L PRO 59 n 59 PRO 59 L SER 60 n 60 SER 60 L ARG 61 n 61 ARG 61 L PHE 62 n 62 PHE 62 L SER 63 n 63 SER 63 L GLY 64 n 64 GLY 64 L SER 65 n 65 SER 65 L GLY 66 n 66 GLY 66 L SER 67 n 67 SER 67 L GLY 68 n 68 GLY 68 L THR 69 n 69 THR 69 L GLN 70 n 70 GLN 70 L TYR 71 n 71 TYR 71 L SER 72 n 72 SER 72 L LEU 73 n 73 LEU 73 L LYS 74 n 74 LYS 74 L ILE 75 n 75 ILE 75 L ASN 76 n 76 ASN 76 L SER 77 n 77 SER 77 L LEU 78 n 78 LEU 78 L GLN 79 n 79 GLN 79 L PRO 80 n 80 PRO 80 L ASP 81 n 81 ASP 81 L ASP 82 n 82 ASP 82 L PHE 83 n 83 PHE 83 L GLY 84 n 84 GLY 84 L SER 85 n 85 SER 85 L TYR 86 n 86 TYR 86 L TYR 87 n 87 TYR 87 L CYS 88 n 88 CYS 88 L GLN 89 n 89 GLN 89 L HIS 90 n 90 HIS 90 L PHE 91 n 91 PHE 91 L TRP 92 n 92 TRP 92 L SER 93 n 93 SER 93 L THR 94 n 94 THR 94 L PRO 95 n 95 PRO 95 L ARG 96 n 96 ARG 96 L THR 97 n 97 THR 97 L PHE 98 n 98 PHE 98 L GLY 99 n 99 GLY 99 L GLY 100 n 100 GLY 100 L GLY 101 n 101 GLY 101 L THR 102 n 102 THR 102 L LYS 103 n 103 LYS 103 L LEU 104 n 104 LEU 104 L GLU 105 n 105 GLU 105 L ILE 106 n 106 ILE 106 L LYS 107 n 107 LYS 107 L GLN 201 n 1 GLN 201 H VAL 202 n 2 VAL 202 H GLN 203 n 3 GLN 203 H LEU 204 n 4 LEU 204 H GLN 205 n 5 GLN 205 H GLU 206 n 6 GLU 206 H SER 207 n 7 SER 207 H GLY 208 n 8 GLY 208 H PRO 209 n 9 PRO 209 H GLY 210 n 10 GLY 210 H LEU 211 n 11 LEU 211 H VAL 212 n 12 VAL 212 H ALA 213 n 13 ALA 213 H PRO 214 n 14 PRO 214 H SER 215 n 15 SER 215 H GLN 216 n 16 GLN 216 H SER 217 n 17 SER 217 H LEU 218 n 18 LEU 218 H SER 219 n 19 SER 219 H ILE 220 n 20 ILE 220 H THR 221 n 21 THR 221 H CYS 222 n 22 CYS 222 H THR 223 n 23 THR 223 H VAL 224 n 24 VAL 224 H SER 225 n 25 SER 225 H GLY 226 n 26 GLY 226 H PHE 227 n 27 PHE 227 H SER 228 n 28 SER 228 H LEU 229 n 29 LEU 229 H THR 230 n 30 THR 230 H GLY 231 n 31 GLY 231 H TYR 232 n 32 TYR 232 H GLY 233 n 33 GLY 233 H VAL 234 n 34 VAL 234 H ASN 235 n 35 ASN 235 H TRP 236 n 36 TRP 236 H VAL 237 n 37 VAL 237 H ARG 238 n 38 ARG 238 H GLN 239 n 39 GLN 239 H PRO 240 n 40 PRO 240 H PRO 241 n 41 PRO 241 H GLY 242 n 42 GLY 242 H LYS 243 n 43 LYS 243 H GLY 244 n 44 GLY 244 H LEU 245 n 45 LEU 245 H GLU 246 n 46 GLU 246 H TRP 247 n 47 TRP 247 H LEU 248 n 48 LEU 248 H GLY 249 n 49 GLY 249 H MET 250 n 50 MET 250 H ILE 251 n 51 ILE 251 H TRP 252 n 52 TRP 252 H GLY 253 n 53 GLY 253 H ASP 254 n 54 ASP 254 H GLY 255 n 55 GLY 255 H ASN 256 n 56 ASN 256 H THR 257 n 57 THR 257 H ASP 258 n 58 ASP 258 H TYR 259 n 59 TYR 259 H ASN 260 n 60 ASN 260 H SER 261 n 61 SER 261 H ALA 262 n 62 ALA 262 H LEU 263 n 63 LEU 263 H LYS 264 n 64 LYS 264 H SER 265 n 65 SER 265 H ARG 266 n 66 ARG 266 H LEU 267 n 67 LEU 267 H SER 268 n 68 SER 268 H ILE 269 n 69 ILE 269 H SER 270 n 70 SER 270 H LYS 271 n 71 LYS 271 H ASP 272 n 72 ASP 272 H ASN 273 n 73 ASN 273 H SER 274 n 74 SER 274 H LYS 275 n 75 LYS 275 H SER 276 n 76 SER 276 H GLN 277 n 77 GLN 277 H VAL 278 n 78 VAL 278 H PHE 279 n 79 PHE 279 H LEU 280 n 80 LEU 280 H LYS 281 n 81 LYS 281 H MET 282 n 82 MET 282 H ASN 283 n 83 ASN 283 H SER 284 n 84 SER 284 H LEU 285 n 85 LEU 285 H HIS 286 n 86 HIS 286 H THR 287 n 87 THR 287 H ASP 288 n 88 ASP 288 H ASP 289 n 89 ASP 289 H THR 290 n 90 THR 290 H ALA 291 n 91 ALA 291 H ARG 292 n 92 ARG 292 H TYR 293 n 93 TYR 293 H TYR 294 n 94 TYR 294 H CYS 295 n 95 CYS 295 H ALA 296 n 96 ALA 296 H ARG 297 n 97 ARG 297 H GLU 298 n 98 GLU 298 H ARG 299 n 99 ARG 299 H ASP 300 n 100 ASP 300 H TYR 301 n 101 TYR 301 H ARG 302 n 102 ARG 302 H LEU 303 n 103 LEU 303 H ASP 304 n 104 ASP 304 H TYR 305 n 105 TYR 305 H TRP 306 n 106 TRP 306 H GLY 307 n 107 GLY 307 H GLN 308 n 108 GLN 308 H GLY 309 n 109 GLY 309 H THR 310 n 110 THR 310 H THR 311 n 111 THR 311 H LEU 312 n 112 LEU 312 H THR 313 n 113 THR 313 H VAL 314 n 114 VAL 314 H SER 315 n 115 SER 315 H SER 316 n 116 SER 316 H 0.17 author_and_software_defined_assembly PISA 2 dimeric 1680 -9 9920 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 L O THR 5 A O THR 5 L N ARG 24 A N ARG 24 L O VAL 19 A O VAL 19 L N ILE 75 A N ILE 75 L O GLN 70 A O GLN 70 L N SER 67 A N SER 67 L O LEU 11 A O LEU 11 L N LYS 103 A N LYS 103 L O THR 102 A O THR 102 L N TYR 86 A N TYR 86 L O SER 85 A O SER 85 L N GLN 38 A N GLN 38 L O TRP 35 A O TRP 35 L N VAL 48 A N VAL 48 H O GLN 203 B O GLN 3 H N SER 225 B N SER 25 H O LEU 218 B O LEU 18 H N MET 282 B N MET 82 H O GLN 277 B O GLN 77 H N ASP 272 B N ASP 72 H O THR 310 B O THR 110 H N TYR 293 B N TYR 93 H O ARG 292 B O ARG 92 H N GLN 239 B N GLN 39 H O VAL 234 B O VAL 34 H N ILE 251 B N ILE 51 H O MET 250 B O MET 50 H N ASP 258 B N ASP 58 H O ARG 297 B O ARG 97 H N TYR 305 B N TYR 105 1 L CG ARG 24 A CG ARG 24 1 Y 1 L CD ARG 24 A CD ARG 24 1 Y 1 L NE ARG 24 A NE ARG 24 1 Y 1 L CZ ARG 24 A CZ ARG 24 1 Y 1 L NH1 ARG 24 A NH1 ARG 24 1 Y 1 L NH2 ARG 24 A NH2 ARG 24 1 Y 1 L CG ASP 56 A CG ASP 56 1 Y 1 L OD1 ASP 56 A OD1 ASP 56 1 Y 1 L OD2 ASP 56 A OD2 ASP 56 1 Y 1 H CG ASP 300 B CG ASP 100 1 Y 1 H OD1 ASP 300 B OD1 ASP 100 1 Y 1 H OD2 ASP 300 B OD2 ASP 100 1 Y 1 H OG SER 316 B OG SER 116 1 Y 1 8.62 0.90 118.30 126.92 L L L CB CG OD1 ASP ASP ASP 1 1 1 N 1 -13.66 0.90 118.30 104.64 L L L CB CG OD2 ASP ASP ASP 1 1 1 N 1 10.26 1.50 110.50 120.76 L L L N CA CB SER SER SER 10 10 10 N 1 -3.93 0.60 121.00 117.07 L L L CB CG CD1 TYR TYR TYR 49 49 49 N 1 55.26 1.40 123.60 178.86 L L L CD NE CZ ARG ARG ARG 61 61 61 N 1 -15.38 1.80 110.60 95.22 L L L N CA CB GLN GLN GLN 70 70 70 N 1 17.75 2.20 113.40 131.15 L L L CA CB CG GLN GLN GLN 70 70 70 N 1 -4.31 0.60 121.00 116.69 L L L CB CG CD2 TYR TYR TYR 71 71 71 N 1 -4.37 0.60 121.00 116.63 L L L CB CG CD2 TYR TYR TYR 86 86 86 N 1 11.66 1.10 119.40 131.06 L L L NH1 CZ NH2 ARG ARG ARG 96 96 96 N 1 -3.89 0.50 120.30 116.41 L L L NE CZ NH1 ARG ARG ARG 96 96 96 N 1 -7.77 0.50 120.30 112.53 L L L NE CZ NH2 ARG ARG ARG 96 96 96 N 1 13.68 1.20 123.30 136.98 L L L OE1 CD OE2 GLU GLU GLU 105 105 105 N 1 -12.74 2.00 118.30 105.56 L L L CG CD OE2 GLU GLU GLU 105 105 105 N 1 14.05 2.10 120.10 134.15 H H H CA C O GLN GLN GLN 201 201 201 N 1 -8.45 1.20 123.30 114.85 H H H OE1 CD OE2 GLU GLU GLU 206 206 206 N 1 12.66 1.70 111.00 123.66 H H H CB CG CD1 LEU LEU LEU 218 218 218 N 1 9.32 1.50 110.50 119.82 H H H N CA CB SER SER SER 225 225 225 N 1 -14.25 1.90 110.10 95.85 H H H CB CA C SER SER SER 228 228 228 N 1 -17.05 2.70 111.20 94.15 H H H CA CB OG SER SER SER 228 228 228 N 1 9.21 0.90 118.30 127.51 H H H CB CG OD1 ASP ASP ASP 254 254 254 N 1 -6.95 0.90 118.30 111.35 H H H CB CG OD2 ASP ASP ASP 254 254 254 N 1 -7.22 0.90 118.30 111.08 H H H CB CG OD1 ASP ASP ASP 258 258 258 N 1 9.88 0.90 118.30 128.18 H H H CB CG OD2 ASP ASP ASP 258 258 258 N 1 -3.74 0.60 121.00 117.26 H H H CB CG CD1 TYR TYR TYR 259 259 259 N 1 7.71 0.50 120.30 128.01 H H H NE CZ NH1 ARG ARG ARG 266 266 266 N 1 -9.82 0.50 120.30 110.48 H H H NE CZ NH2 ARG ARG ARG 266 266 266 N 1 -11.90 1.90 110.20 98.30 H H H CB CA C LEU LEU LEU 267 267 267 N 1 -13.48 2.20 117.20 103.72 H H H CA C N SER SER LEU 284 284 285 Y 1 5.63 0.90 118.30 123.93 H H H CB CG OD2 ASP ASP ASP 289 289 289 N 1 3.38 0.50 120.30 123.68 H H H NE CZ NH1 ARG ARG ARG 292 292 292 N 1 -3.01 0.50 120.30 117.29 H H H NE CZ NH2 ARG ARG ARG 292 292 292 N 1 -4.77 0.60 121.00 116.23 H H H CB CG CD2 TYR TYR TYR 294 294 294 N 1 4.46 0.60 121.00 125.46 H H H CB CG CD1 TYR TYR TYR 294 294 294 N 1 5.36 0.50 120.30 125.66 H H H NE CZ NH1 ARG ARG ARG 299 299 299 B B B N 1 -4.96 0.60 121.00 116.04 H H H CB CG CD1 TYR TYR TYR 301 301 301 N 1 -5.34 0.50 120.30 114.96 H H H NE CZ NH2 ARG ARG ARG 302 302 302 N 1 8.02 0.90 118.30 126.32 H H H CB CG OD1 ASP ASP ASP 304 304 304 N 1 L L CB CG GLN GLN 70 70 -0.451 0.027 1.521 1.070 N 1 L THR 51 66.90 -51.38 1 L SER 77 34.64 80.52 1 L SER 93 51.42 -137.07 1 H SER 215 74.19 -12.38 1 H SER 284 24.22 84.24 1 H ASP 300 47.01 70.86 18.25 0.17 2.01 6.0 14719 14719 1 0.0 MOLECULAR REPLACEMENT PDB ENTRY 1VFA 2.01 6.0 111 1832 0 0 1721 0.019 0.020 0.050 0.040 0.051 0.050 1.305 1.500 1.960 2.000 2.520 2.000 3.584 3.000 0.016 0.020 0.145 0.120 0.164 0.200 0.176 0.200 0.138 0.200 2.61 3.0 19.1 20.0 13.8 15.0 15.0 15.94 2.0 13.89 1A7R 96880 0.0 0.08 1 4.3 94.7 0.297 2.00 2.05 2.6 43.3 data reduction MOSFLM data reduction AGROVATA/ROTAVATA model building ALMN/CCP4 refinement CCP4 data scaling Agrovata data scaling ROTAVATA phasing CCP4 (ALMN) FV FRAGMENT OF MOUSE MONOCLONAL ANTIBODY D1.3 (BALB/C, IGG1, K) VARIANT CHAIN L GLU81->ASP 1 N N 2 N N 3 N N 3 N N L PRO 80 A PRO 80 HELX_P L ASP 82 A ASP 82 5 1 3 H LYS 264 B LYS 64 HELX_P H ARG 266 B ARG 66 5 2 3 H THR 287 B THR 87 HELX_P H ASP 289 B ASP 89 5 3 3 disulf 2.033 L CYS 23 A SG CYS 23 1_555 L CYS 88 A SG CYS 88 1_555 disulf 2.025 H CYS 222 B SG CYS 22 1_555 H CYS 295 B SG CYS 95 1_555 IMMUNOGLOBULIN IMMUNOGLOBULIN L SER 7 A SER 7 1 L PRO 8 A PRO 8 -0.35 L THR 94 A THR 94 1 L PRO 95 A PRO 95 -1.90 KV5C_MOUSE UNP 1 1 P01635 DIELTQSPASLSASVGETVTITCRASGNIHNYLAWYQQKQGKSPQLLVYKAQTLADGVPSRFSGSGSGTQYSLKINSLQP EDFGSYYCQHFWSTPPWTFGGGTKLEIKRA HV44_MOUSE UNP 2 1 P01820 DVLMTQTPLTLSVTIGQPASISCKSSQSLLHTDGKTYLIWLLQRPGQSPKRLIYLVSKLDSGVPDRFTGSGSGTDFTLKI SRVEAEDLGVYYCWQGTHFPQTFGGGTKLEIKRADAAPGSTSGSGKSSEGKGQVQLQESGPGLVAPSQSLSITCTVSGFS LTGYGVNWVRQPPGKGLEWLGMIWGDGNTDYNSALKSRLSISKDNSKSQVFLKMNSLHTDDTARYYCARERDYRLDYWGQ GTTVTVSSTKTTPPSVYPAAAHHHHHHGAAEQKLISEEDLNGAA 1 108 1A7R 1 107 P01635 L 1 1 107 133 248 1A7R 201 316 P01820 H 2 1 116 1 GLU conflict VAL 3 1A7R L P01635 UNP 3 3 1 LYS conflict TYR 50 1A7R L P01635 UNP 50 50 1 ALA conflict THR 51 1A7R L P01635 UNP 51 51 1 GLN conflict THR 52 1A7R L P01635 UNP 52 52 1 GLU variant ASP 81 1A7R L P01635 UNP 81 81 1 PRO deletion 1A7R L P01635 UNP 95 1 TRP conflict ARG 96 1A7R L P01635 UNP 97 96 2 VAL conflict LEU 312 1A7R H P01820 UNP 244 112 4 5 4 5 2 anti-parallel anti-parallel anti-parallel parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel L LEU 4 A LEU 4 L SER 7 A SER 7 L VAL 19 A VAL 19 L ALA 25 A ALA 25 L GLN 70 A GLN 70 L ILE 75 A ILE 75 L PHE 62 A PHE 62 L SER 67 A SER 67 L SER 10 A SER 10 L ALA 13 A ALA 13 L THR 102 A THR 102 L ILE 106 A ILE 106 L GLY 84 A GLY 84 L HIS 90 A HIS 90 L LEU 33 A LEU 33 L GLN 38 A GLN 38 L GLN 45 A GLN 45 L VAL 48 A VAL 48 H GLN 203 B GLN 3 H SER 207 B SER 7 H LEU 218 B LEU 18 H SER 225 B SER 25 H GLN 277 B GLN 77 H MET 282 B MET 82 H LEU 267 B LEU 67 H ASP 272 B ASP 72 H THR 310 B THR 110 H LEU 312 B LEU 112 H ALA 291 B ALA 91 H GLU 298 B GLU 98 H GLY 233 B GLY 33 H GLN 239 B GLN 39 H LEU 245 B LEU 45 H ILE 251 B ILE 51 H THR 257 B THR 57 H TYR 259 B TYR 59 H ALA 296 B ALA 96 H GLU 298 B GLU 98 H LEU 303 B LEU 103 H TRP 306 B TRP 106 96 P 43 21 2