0.016779 0.000000 0.000000 0.000000 0.019157 0.000000 0.000000 0.000000 0.016207 0.00000 0.00000 0.00000 Weber, I.T. Wu, J. Adomat, J. Harrison, R.W. Kimmel, A.R. Wondrak, E.M. Louis, J.M. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 8 90.00 90.00 90.00 59.600 52.200 61.700 C40 H70 N11 O8 1 833.053 N-[(2R)-2-({N~5~-[amino(iminio)methyl]-L-ornithyl-L-valyl}amino)-4-methylpentyl]-L-phenylalanyl-L-alpha-glutamyl-L-alanyl-L-norleucinamide Inhibitor analogues of CA-p2 peptide-like C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking IX Eur.J.Biochem. EJBCAI 0262 0014-2956 249 523 530 10.1111/j.1432-1033.1997.00523.x 9370363 Crystallographic analysis of human immunodeficiency virus 1 protease with an analog of the conserved CA-p2 substrate -- interactions with frequently occurring glutamic acid residue at P2' position of substrates. 1997 10.2210/pdb1a8k/pdb pdb_00001a8k 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 293 1 MIRRORS IMAGE PLATE 1996-03 RIGAKU NI FILTER M x-ray 1 1.5418 1.0 1.5418 ROTATING ANODE RIGAKU RUH2R 10804.808 HIV PROTEASE 3.4.23.16 Q7K, L33I, L63I 4 man polymer ANALOG OF THE CONSERVED CA-P2 SUBSTRATE 833.053 N-[(2R)-2-({N~5~-[amino(iminio)methyl]-L-ornithyl-L-valyl}amino)-4-methylpentyl]-L-phenylalanyl-L-alpha-glutamyl-L-alanyl-L-norleucinamide 2 syn non-polymer 18.015 water 159 nat water no no PQITLWKRPLVTIKIGGQLKEALLDTGADDTVIEEMSLPGRWKPKMIGGIGGFIKVRQYDQIIIEICGHKAIGTVLVGPT PVNIIGRNLLTQIGCTLNF PQITLWKRPLVTIKIGGQLKEALLDTGADDTVIEEMSLPGRWKPKMIGGIGGFIKVRQYDQIIIEICGHKAIGTVLVGPT PVNIIGRNLLTQIGCTLNF A,B,D,E polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Lentivirus Escherichia sample 11676 Human immunodeficiency virus 1 562 Escherichia coli 1 2.14 42.41 THE DATA WAS COLLECTED ON AN R-AXIS IMAGING PLATE DETECTOR MOUNTED ON AN RU200 RIGAKU ROTATING ANODE X-RAY GENERATOR THAT WAS OPERATED AT 50 KV AND 100 MA WITH A 0.5-MM COLLIMATOR. EACH OSCILLATION FRAME WAS EXPOSED FOR 45 MIN. AT ROOM TEMPERATURE WITH 3.0 OSCILLATIONS. THE DISTANCE TO THE DETECTOR PLATE WAS SET AT 100 MM. 4.7 pH 4.7 database_2 pdbx_database_status struct_ref_seq_dif struct_site pdbx_initial_refinement_model repository Initial release Version format compliance Atomic model Database references Derived calculations Non-polymer description Structure summary Version format compliance Other Database references Derived calculations Other Refinement description 1 0 1999-01-13 1 1 2008-03-24 1 2 2011-07-13 1 3 2012-12-12 1 4 2021-11-03 1 5 2023-08-02 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_database_status.process_site _struct_ref_seq_dif.details _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id Y BNL 1998-03-27 REL 0Q4 N-[(2R)-2-({N~5~-[amino(iminio)methyl]-L-ornithyl-L-valyl}amino)-4-methylpentyl]-L-phenylalanyl-L-alpha-glutamyl-L-alanyl-L-norleucinamide HOH water PEPTIDE INHIBITOR 0Q4 HAS A REDUCED PEPTIDE (-CH2-NH) INSTEAD OF THE NORMAL PEPTIDE LINK (-CO-NH). MUTATIONS Q7K, L33I, L63I HAVE BEEN MADE TO STABILIZE THE PROTEASE FROM AUTOPROTEOLYSIS, WHILE RETAINING ACTIVITY SIMILAR TO WILD-TYPE HIV-1 PROTEASE 7HVP PDB ENTRY 7HVP PDB experimental model Inhibitor N-[(2R)-2-({N~5~-[amino(iminio)methyl]-L-ornithyl-L-valyl}amino)-4-methylpentyl]-L-phenylalanyl-L-alpha-glutamyl- L-alanyl-L-norleucinamide Peptide-like ARG 1 2 0Q4 0Q4 100 A ARG 1 2 0Q4 0Q4 100 E HOH 403 3 HOH HOH 403 A HOH 404 3 HOH HOH 404 A HOH 405 3 HOH HOH 405 A HOH 410 3 HOH HOH 410 A HOH 412 3 HOH HOH 412 A HOH 413 3 HOH HOH 413 A HOH 431 3 HOH HOH 431 A HOH 501 3 HOH HOH 501 A HOH 507 3 HOH HOH 507 A HOH 511 3 HOH HOH 511 A HOH 526 3 HOH HOH 526 A HOH 603 3 HOH HOH 603 A HOH 614 3 HOH HOH 614 A HOH 633 3 HOH HOH 633 A HOH 700 3 HOH HOH 700 A HOH 701 3 HOH HOH 701 A HOH 703 3 HOH HOH 703 A HOH 704 3 HOH HOH 704 A HOH 706 3 HOH HOH 706 A HOH 708 3 HOH HOH 708 A HOH 715 3 HOH HOH 715 A HOH 722 3 HOH HOH 722 A HOH 724 3 HOH HOH 724 A HOH 727 3 HOH HOH 727 A HOH 728 3 HOH HOH 728 A HOH 729 3 HOH HOH 729 A HOH 732 3 HOH HOH 732 A HOH 742 3 HOH HOH 742 A HOH 746 3 HOH HOH 746 A HOH 749 3 HOH HOH 749 A HOH 750 3 HOH HOH 750 A HOH 760 3 HOH HOH 760 A HOH 765 3 HOH HOH 765 A HOH 766 3 HOH HOH 766 A HOH 771 3 HOH HOH 771 A HOH 1548 3 HOH HOH 1548 A HOH 407 3 HOH HOH 407 B HOH 420 3 HOH HOH 420 B HOH 423 3 HOH HOH 423 B HOH 424 3 HOH HOH 424 B HOH 428 3 HOH HOH 428 B HOH 429 3 HOH HOH 429 B HOH 434 3 HOH HOH 434 B HOH 515 3 HOH HOH 515 B HOH 519 3 HOH HOH 519 B HOH 548 3 HOH HOH 548 B HOH 555 3 HOH HOH 555 B HOH 556 3 HOH HOH 556 B HOH 601 3 HOH HOH 601 B HOH 611 3 HOH HOH 611 B HOH 624 3 HOH HOH 624 B HOH 625 3 HOH HOH 625 B HOH 647 3 HOH HOH 647 B HOH 711 3 HOH HOH 711 B HOH 712 3 HOH HOH 712 B HOH 716 3 HOH HOH 716 B HOH 730 3 HOH HOH 730 B HOH 734 3 HOH HOH 734 B HOH 735 3 HOH HOH 735 B HOH 736 3 HOH HOH 736 B HOH 737 3 HOH HOH 737 B HOH 740 3 HOH HOH 740 B HOH 743 3 HOH HOH 743 B HOH 751 3 HOH HOH 751 B HOH 752 3 HOH HOH 752 B HOH 754 3 HOH HOH 754 B HOH 758 3 HOH HOH 758 B HOH 762 3 HOH HOH 762 B HOH 768 3 HOH HOH 768 B HOH 770 3 HOH HOH 770 B HOH 772 3 HOH HOH 772 B HOH 1704 3 HOH HOH 1704 B HOH 1750 3 HOH HOH 1750 B HOH 1766 3 HOH HOH 1766 B HOH 617 3 HOH HOH 617 D HOH 1402 3 HOH HOH 1402 D HOH 1403 3 HOH HOH 1403 D HOH 1404 3 HOH HOH 1404 D HOH 1405 3 HOH HOH 1405 D HOH 1406 3 HOH HOH 1406 D HOH 1410 3 HOH HOH 1410 D HOH 1412 3 HOH HOH 1412 D HOH 1413 3 HOH HOH 1413 D HOH 1414 3 HOH HOH 1414 D HOH 1431 3 HOH HOH 1431 D HOH 1441 3 HOH HOH 1441 D HOH 1507 3 HOH HOH 1507 D HOH 1515 3 HOH HOH 1515 D HOH 1526 3 HOH HOH 1526 D HOH 1603 3 HOH HOH 1603 D HOH 1614 3 HOH HOH 1614 D HOH 1633 3 HOH HOH 1633 D HOH 1645 3 HOH HOH 1645 D HOH 1647 3 HOH HOH 1647 D HOH 1700 3 HOH HOH 1700 D HOH 1701 3 HOH HOH 1701 D HOH 1703 3 HOH HOH 1703 D HOH 1706 3 HOH HOH 1706 D HOH 1709 3 HOH HOH 1709 D HOH 1724 3 HOH HOH 1724 D HOH 1726 3 HOH HOH 1726 D HOH 1727 3 HOH HOH 1727 D HOH 1729 3 HOH HOH 1729 D HOH 1731 3 HOH HOH 1731 D HOH 1732 3 HOH HOH 1732 D HOH 1742 3 HOH HOH 1742 D HOH 1746 3 HOH HOH 1746 D HOH 1747 3 HOH HOH 1747 D HOH 1748 3 HOH HOH 1748 D HOH 1749 3 HOH HOH 1749 D HOH 1764 3 HOH HOH 1764 D HOH 1765 3 HOH HOH 1765 D HOH 1767 3 HOH HOH 1767 D HOH 1771 3 HOH HOH 1771 D HOH 402 3 HOH HOH 402 E HOH 747 3 HOH HOH 747 E HOH 1407 3 HOH HOH 1407 E HOH 1408 3 HOH HOH 1408 E HOH 1409 3 HOH HOH 1409 E HOH 1411 3 HOH HOH 1411 E HOH 1420 3 HOH HOH 1420 E HOH 1423 3 HOH HOH 1423 E HOH 1424 3 HOH HOH 1424 E HOH 1428 3 HOH HOH 1428 E HOH 1429 3 HOH HOH 1429 E HOH 1434 3 HOH HOH 1434 E HOH 1438 3 HOH HOH 1438 E HOH 1501 3 HOH HOH 1501 E HOH 1511 3 HOH HOH 1511 E HOH 1519 3 HOH HOH 1519 E HOH 1555 3 HOH HOH 1555 E HOH 1556 3 HOH HOH 1556 E HOH 1601 3 HOH HOH 1601 E HOH 1611 3 HOH HOH 1611 E HOH 1617 3 HOH HOH 1617 E HOH 1711 3 HOH HOH 1711 E HOH 1712 3 HOH HOH 1712 E HOH 1715 3 HOH HOH 1715 E HOH 1716 3 HOH HOH 1716 E HOH 1722 3 HOH HOH 1722 E HOH 1728 3 HOH HOH 1728 E HOH 1730 3 HOH HOH 1730 E HOH 1734 3 HOH HOH 1734 E HOH 1735 3 HOH HOH 1735 E HOH 1736 3 HOH HOH 1736 E HOH 1737 3 HOH HOH 1737 E HOH 1739 3 HOH HOH 1739 E HOH 1740 3 HOH HOH 1740 E HOH 1741 3 HOH HOH 1741 E HOH 1743 3 HOH HOH 1743 E HOH 1754 3 HOH HOH 1754 E HOH 1755 3 HOH HOH 1755 E HOH 1758 3 HOH HOH 1758 E HOH 1760 3 HOH HOH 1760 E HOH 1761 3 HOH HOH 1761 E HOH 1762 3 HOH HOH 1762 E HOH 1768 3 HOH HOH 1768 E HOH 1770 3 HOH HOH 1770 E HOH 1772 3 HOH HOH 1772 E PRO 1 n 1 PRO 1 A GLN 2 n 2 GLN 2 A ILE 3 n 3 ILE 3 A THR 4 n 4 THR 4 A LEU 5 n 5 LEU 5 A TRP 6 n 6 TRP 6 A LYS 7 n 7 LYS 7 A ARG 8 n 8 ARG 8 A PRO 9 n 9 PRO 9 A LEU 10 n 10 LEU 10 A VAL 11 n 11 VAL 11 A THR 12 n 12 THR 12 A ILE 13 n 13 ILE 13 A LYS 14 n 14 LYS 14 A ILE 15 n 15 ILE 15 A GLY 16 n 16 GLY 16 A GLY 17 n 17 GLY 17 A GLN 18 n 18 GLN 18 A LEU 19 n 19 LEU 19 A LYS 20 n 20 LYS 20 A GLU 21 n 21 GLU 21 A ALA 22 n 22 ALA 22 A LEU 23 n 23 LEU 23 A LEU 24 n 24 LEU 24 A ASP 25 n 25 ASP 25 A THR 26 n 26 THR 26 A GLY 27 n 27 GLY 27 A ALA 28 n 28 ALA 28 A ASP 29 n 29 ASP 29 A ASP 30 n 30 ASP 30 A THR 31 n 31 THR 31 A VAL 32 n 32 VAL 32 A ILE 33 n 33 ILE 33 A GLU 34 n 34 GLU 34 A GLU 35 n 35 GLU 35 A MET 36 n 36 MET 36 A SER 37 n 37 SER 37 A LEU 38 n 38 LEU 38 A PRO 39 n 39 PRO 39 A GLY 40 n 40 GLY 40 A ARG 41 n 41 ARG 41 A TRP 42 n 42 TRP 42 A LYS 43 n 43 LYS 43 A PRO 44 n 44 PRO 44 A LYS 45 n 45 LYS 45 A MET 46 n 46 MET 46 A ILE 47 n 47 ILE 47 A GLY 48 n 48 GLY 48 A GLY 49 n 49 GLY 49 A ILE 50 n 50 ILE 50 A GLY 51 n 51 GLY 51 A GLY 52 n 52 GLY 52 A PHE 53 n 53 PHE 53 A ILE 54 n 54 ILE 54 A LYS 55 n 55 LYS 55 A VAL 56 n 56 VAL 56 A ARG 57 n 57 ARG 57 A GLN 58 n 58 GLN 58 A TYR 59 n 59 TYR 59 A ASP 60 n 60 ASP 60 A GLN 61 n 61 GLN 61 A ILE 62 n 62 ILE 62 A ILE 63 n 63 ILE 63 A ILE 64 n 64 ILE 64 A GLU 65 n 65 GLU 65 A ILE 66 n 66 ILE 66 A CYS 67 n 67 CYS 67 A GLY 68 n 68 GLY 68 A HIS 69 n 69 HIS 69 A LYS 70 n 70 LYS 70 A ALA 71 n 71 ALA 71 A ILE 72 n 72 ILE 72 A GLY 73 n 73 GLY 73 A THR 74 n 74 THR 74 A VAL 75 n 75 VAL 75 A LEU 76 n 76 LEU 76 A VAL 77 n 77 VAL 77 A GLY 78 n 78 GLY 78 A PRO 79 n 79 PRO 79 A THR 80 n 80 THR 80 A PRO 81 n 81 PRO 81 A VAL 82 n 82 VAL 82 A ASN 83 n 83 ASN 83 A ILE 84 n 84 ILE 84 A ILE 85 n 85 ILE 85 A GLY 86 n 86 GLY 86 A ARG 87 n 87 ARG 87 A ASN 88 n 88 ASN 88 A LEU 89 n 89 LEU 89 A LEU 90 n 90 LEU 90 A THR 91 n 91 THR 91 A GLN 92 n 92 GLN 92 A ILE 93 n 93 ILE 93 A GLY 94 n 94 GLY 94 A CYS 95 n 95 CYS 95 A THR 96 n 96 THR 96 A LEU 97 n 97 LEU 97 A ASN 98 n 98 ASN 98 A PHE 99 n 99 PHE 99 A PRO 1 n 1 PRO 1 B GLN 2 n 2 GLN 2 B ILE 3 n 3 ILE 3 B THR 4 n 4 THR 4 B LEU 5 n 5 LEU 5 B TRP 6 n 6 TRP 6 B LYS 7 n 7 LYS 7 B ARG 8 n 8 ARG 8 B PRO 9 n 9 PRO 9 B LEU 10 n 10 LEU 10 B VAL 11 n 11 VAL 11 B THR 12 n 12 THR 12 B ILE 13 n 13 ILE 13 B LYS 14 n 14 LYS 14 B ILE 15 n 15 ILE 15 B GLY 16 n 16 GLY 16 B GLY 17 n 17 GLY 17 B GLN 18 n 18 GLN 18 B LEU 19 n 19 LEU 19 B LYS 20 n 20 LYS 20 B GLU 21 n 21 GLU 21 B ALA 22 n 22 ALA 22 B LEU 23 n 23 LEU 23 B LEU 24 n 24 LEU 24 B ASP 25 n 25 ASP 25 B THR 26 n 26 THR 26 B GLY 27 n 27 GLY 27 B ALA 28 n 28 ALA 28 B ASP 29 n 29 ASP 29 B ASP 30 n 30 ASP 30 B THR 31 n 31 THR 31 B VAL 32 n 32 VAL 32 B ILE 33 n 33 ILE 33 B GLU 34 n 34 GLU 34 B GLU 35 n 35 GLU 35 B MET 36 n 36 MET 36 B SER 37 n 37 SER 37 B LEU 38 n 38 LEU 38 B PRO 39 n 39 PRO 39 B GLY 40 n 40 GLY 40 B ARG 41 n 41 ARG 41 B TRP 42 n 42 TRP 42 B LYS 43 n 43 LYS 43 B PRO 44 n 44 PRO 44 B LYS 45 n 45 LYS 45 B MET 46 n 46 MET 46 B ILE 47 n 47 ILE 47 B GLY 48 n 48 GLY 48 B GLY 49 n 49 GLY 49 B ILE 50 n 50 ILE 50 B GLY 51 n 51 GLY 51 B GLY 52 n 52 GLY 52 B PHE 53 n 53 PHE 53 B ILE 54 n 54 ILE 54 B LYS 55 n 55 LYS 55 B VAL 56 n 56 VAL 56 B ARG 57 n 57 ARG 57 B GLN 58 n 58 GLN 58 B TYR 59 n 59 TYR 59 B ASP 60 n 60 ASP 60 B GLN 61 n 61 GLN 61 B ILE 62 n 62 ILE 62 B ILE 63 n 63 ILE 63 B ILE 64 n 64 ILE 64 B GLU 65 n 65 GLU 65 B ILE 66 n 66 ILE 66 B CYS 67 n 67 CYS 67 B GLY 68 n 68 GLY 68 B HIS 69 n 69 HIS 69 B LYS 70 n 70 LYS 70 B ALA 71 n 71 ALA 71 B ILE 72 n 72 ILE 72 B GLY 73 n 73 GLY 73 B THR 74 n 74 THR 74 B VAL 75 n 75 VAL 75 B LEU 76 n 76 LEU 76 B VAL 77 n 77 VAL 77 B GLY 78 n 78 GLY 78 B PRO 79 n 79 PRO 79 B THR 80 n 80 THR 80 B PRO 81 n 81 PRO 81 B VAL 82 n 82 VAL 82 B ASN 83 n 83 ASN 83 B ILE 84 n 84 ILE 84 B ILE 85 n 85 ILE 85 B GLY 86 n 86 GLY 86 B ARG 87 n 87 ARG 87 B ASN 88 n 88 ASN 88 B LEU 89 n 89 LEU 89 B LEU 90 n 90 LEU 90 B THR 91 n 91 THR 91 B GLN 92 n 92 GLN 92 B ILE 93 n 93 ILE 93 B GLY 94 n 94 GLY 94 B CYS 95 n 95 CYS 95 B THR 96 n 96 THR 96 B LEU 97 n 97 LEU 97 B ASN 98 n 98 ASN 98 B PHE 99 n 99 PHE 99 B PRO 1 n 1 PRO 1 D GLN 2 n 2 GLN 2 D ILE 3 n 3 ILE 3 D THR 4 n 4 THR 4 D LEU 5 n 5 LEU 5 D TRP 6 n 6 TRP 6 D LYS 7 n 7 LYS 7 D ARG 8 n 8 ARG 8 D PRO 9 n 9 PRO 9 D LEU 10 n 10 LEU 10 D VAL 11 n 11 VAL 11 D THR 12 n 12 THR 12 D ILE 13 n 13 ILE 13 D LYS 14 n 14 LYS 14 D ILE 15 n 15 ILE 15 D GLY 16 n 16 GLY 16 D GLY 17 n 17 GLY 17 D GLN 18 n 18 GLN 18 D LEU 19 n 19 LEU 19 D LYS 20 n 20 LYS 20 D GLU 21 n 21 GLU 21 D ALA 22 n 22 ALA 22 D LEU 23 n 23 LEU 23 D LEU 24 n 24 LEU 24 D ASP 25 n 25 ASP 25 D THR 26 n 26 THR 26 D GLY 27 n 27 GLY 27 D ALA 28 n 28 ALA 28 D ASP 29 n 29 ASP 29 D ASP 30 n 30 ASP 30 D THR 31 n 31 THR 31 D VAL 32 n 32 VAL 32 D ILE 33 n 33 ILE 33 D GLU 34 n 34 GLU 34 D GLU 35 n 35 GLU 35 D MET 36 n 36 MET 36 D SER 37 n 37 SER 37 D LEU 38 n 38 LEU 38 D PRO 39 n 39 PRO 39 D GLY 40 n 40 GLY 40 D ARG 41 n 41 ARG 41 D TRP 42 n 42 TRP 42 D LYS 43 n 43 LYS 43 D PRO 44 n 44 PRO 44 D LYS 45 n 45 LYS 45 D MET 46 n 46 MET 46 D ILE 47 n 47 ILE 47 D GLY 48 n 48 GLY 48 D GLY 49 n 49 GLY 49 D ILE 50 n 50 ILE 50 D GLY 51 n 51 GLY 51 D GLY 52 n 52 GLY 52 D PHE 53 n 53 PHE 53 D ILE 54 n 54 ILE 54 D LYS 55 n 55 LYS 55 D VAL 56 n 56 VAL 56 D ARG 57 n 57 ARG 57 D GLN 58 n 58 GLN 58 D TYR 59 n 59 TYR 59 D ASP 60 n 60 ASP 60 D GLN 61 n 61 GLN 61 D ILE 62 n 62 ILE 62 D ILE 63 n 63 ILE 63 D ILE 64 n 64 ILE 64 D GLU 65 n 65 GLU 65 D ILE 66 n 66 ILE 66 D CYS 67 n 67 CYS 67 D GLY 68 n 68 GLY 68 D HIS 69 n 69 HIS 69 D LYS 70 n 70 LYS 70 D ALA 71 n 71 ALA 71 D ILE 72 n 72 ILE 72 D GLY 73 n 73 GLY 73 D THR 74 n 74 THR 74 D VAL 75 n 75 VAL 75 D LEU 76 n 76 LEU 76 D VAL 77 n 77 VAL 77 D GLY 78 n 78 GLY 78 D PRO 79 n 79 PRO 79 D THR 80 n 80 THR 80 D PRO 81 n 81 PRO 81 D VAL 82 n 82 VAL 82 D ASN 83 n 83 ASN 83 D ILE 84 n 84 ILE 84 D ILE 85 n 85 ILE 85 D GLY 86 n 86 GLY 86 D ARG 87 n 87 ARG 87 D ASN 88 n 88 ASN 88 D LEU 89 n 89 LEU 89 D LEU 90 n 90 LEU 90 D THR 91 n 91 THR 91 D GLN 92 n 92 GLN 92 D ILE 93 n 93 ILE 93 D GLY 94 n 94 GLY 94 D CYS 95 n 95 CYS 95 D THR 96 n 96 THR 96 D LEU 97 n 97 LEU 97 D ASN 98 n 98 ASN 98 D PHE 99 n 99 PHE 99 D PRO 1 n 1 PRO 1 E GLN 2 n 2 GLN 2 E ILE 3 n 3 ILE 3 E THR 4 n 4 THR 4 E LEU 5 n 5 LEU 5 E TRP 6 n 6 TRP 6 E LYS 7 n 7 LYS 7 E ARG 8 n 8 ARG 8 E PRO 9 n 9 PRO 9 E LEU 10 n 10 LEU 10 E VAL 11 n 11 VAL 11 E THR 12 n 12 THR 12 E ILE 13 n 13 ILE 13 E LYS 14 n 14 LYS 14 E ILE 15 n 15 ILE 15 E GLY 16 n 16 GLY 16 E GLY 17 n 17 GLY 17 E GLN 18 n 18 GLN 18 E LEU 19 n 19 LEU 19 E LYS 20 n 20 LYS 20 E GLU 21 n 21 GLU 21 E ALA 22 n 22 ALA 22 E LEU 23 n 23 LEU 23 E LEU 24 n 24 LEU 24 E ASP 25 n 25 ASP 25 E THR 26 n 26 THR 26 E GLY 27 n 27 GLY 27 E ALA 28 n 28 ALA 28 E ASP 29 n 29 ASP 29 E ASP 30 n 30 ASP 30 E THR 31 n 31 THR 31 E VAL 32 n 32 VAL 32 E ILE 33 n 33 ILE 33 E GLU 34 n 34 GLU 34 E GLU 35 n 35 GLU 35 E MET 36 n 36 MET 36 E SER 37 n 37 SER 37 E LEU 38 n 38 LEU 38 E PRO 39 n 39 PRO 39 E GLY 40 n 40 GLY 40 E ARG 41 n 41 ARG 41 E TRP 42 n 42 TRP 42 E LYS 43 n 43 LYS 43 E PRO 44 n 44 PRO 44 E LYS 45 n 45 LYS 45 E MET 46 n 46 MET 46 E ILE 47 n 47 ILE 47 E GLY 48 n 48 GLY 48 E GLY 49 n 49 GLY 49 E ILE 50 n 50 ILE 50 E GLY 51 n 51 GLY 51 E GLY 52 n 52 GLY 52 E PHE 53 n 53 PHE 53 E ILE 54 n 54 ILE 54 E LYS 55 n 55 LYS 55 E VAL 56 n 56 VAL 56 E ARG 57 n 57 ARG 57 E GLN 58 n 58 GLN 58 E TYR 59 n 59 TYR 59 E ASP 60 n 60 ASP 60 E GLN 61 n 61 GLN 61 E ILE 62 n 62 ILE 62 E ILE 63 n 63 ILE 63 E ILE 64 n 64 ILE 64 E GLU 65 n 65 GLU 65 E ILE 66 n 66 ILE 66 E CYS 67 n 67 CYS 67 E GLY 68 n 68 GLY 68 E HIS 69 n 69 HIS 69 E LYS 70 n 70 LYS 70 E ALA 71 n 71 ALA 71 E ILE 72 n 72 ILE 72 E GLY 73 n 73 GLY 73 E THR 74 n 74 THR 74 E VAL 75 n 75 VAL 75 E LEU 76 n 76 LEU 76 E VAL 77 n 77 VAL 77 E GLY 78 n 78 GLY 78 E PRO 79 n 79 PRO 79 E THR 80 n 80 THR 80 E PRO 81 n 81 PRO 81 E VAL 82 n 82 VAL 82 E ASN 83 n 83 ASN 83 E ILE 84 n 84 ILE 84 E ILE 85 n 85 ILE 85 E GLY 86 n 86 GLY 86 E ARG 87 n 87 ARG 87 E ASN 88 n 88 ASN 88 E LEU 89 n 89 LEU 89 E LEU 90 n 90 LEU 90 E THR 91 n 91 THR 91 E GLN 92 n 92 GLN 92 E ILE 93 n 93 ILE 93 E GLY 94 n 94 GLY 94 E CYS 95 n 95 CYS 95 E THR 96 n 96 THR 96 E LEU 97 n 97 LEU 97 E ASN 98 n 98 ASN 98 E PHE 99 n 99 PHE 99 E author_and_software_defined_assembly PISA 2 dimeric author_and_software_defined_assembly PISA 2 dimeric 5390 -30 9170 5420 -33 9150 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A O GLN 18 A O GLN 18 A N ILE 15 A N ILE 15 A O LYS 14 A O LYS 14 A N GLU 65 A N GLU 65 A O ILE 62 A O ILE 62 A N GLY 73 A N GLY 73 A O LYS 45 A O LYS 45 A N VAL 56 A N VAL 56 A O ARG 57 A O ARG 57 A N VAL 77 A N VAL 77 B O VAL 11 B O VAL 11 B N ALA 22 B N ALA 22 B O THR 31 B O THR 31 B N LEU 76 B N LEU 76 B O VAL 75 B O VAL 75 B N TYR 59 B N TYR 59 B O GLY 52 B O GLY 52 B N GLY 49 B N GLY 49 B O ILE 62 B O ILE 62 B N GLY 73 B N GLY 73 D O GLN 18 C O GLN 18 D N ILE 15 C N ILE 15 D O LYS 14 C O LYS 14 D N GLU 65 C N GLU 65 D O ILE 62 C O ILE 62 D N GLY 73 C N GLY 73 D O LYS 43 C O LYS 43 D N GLN 58 C N GLN 58 D O ARG 57 C O ARG 57 D N VAL 77 C N VAL 77 E O VAL 11 D O VAL 11 E N ALA 22 D N ALA 22 E O THR 31 D O THR 31 E N LEU 76 D N LEU 76 E O VAL 75 D O VAL 75 E N TYR 59 D N TYR 59 E O GLY 52 D O GLY 52 E N GLY 49 D N GLY 49 E O ILE 62 D O ILE 62 E N GLY 73 D N GLY 73 1 A A HH21 HH ARG TYR 57 59 1.17 1 D E O H2 HOH HOH 1647 1601 1.48 1 B PHE 99 0.080 SIDE CHAIN 1 -3.35 0.50 120.30 116.95 A A A NE CZ NH1 ARG ARG ARG 8 8 8 N 1 10.65 1.50 119.30 129.95 A A A C N CA GLY PRO PRO 78 79 79 Y 1 8.86 1.10 114.20 123.06 A A A CA CB SG CYS CYS CYS 95 95 95 N 1 10.28 1.50 119.30 129.58 B B B C N CA GLY PRO PRO 78 79 79 Y 1 10.19 1.50 119.30 129.49 D D D C N CA GLY PRO PRO 78 79 79 Y 1 6.92 0.90 118.30 125.22 E E E CB CG OD1 ASP ASP ASP 25 25 25 N 1 10.91 1.10 114.20 125.11 E E E CA CB SG CYS CYS CYS 67 67 67 N 1 -12.88 1.90 111.40 98.52 E E E CB CA C VAL VAL VAL 82 82 82 N 1 D D CB SG CYS CYS 95 95 -0.102 0.016 1.812 1.710 N 1 A PRO 9 -57.81 66.93 1 A PRO 44 -45.38 150.67 1 B PRO 9 -67.74 65.35 1 B GLU 65 -118.16 77.21 1 B ILE 66 -58.70 103.60 1 B CYS 67 36.35 74.64 1 B PRO 79 -61.87 56.03 1 D PRO 9 -65.13 81.13 1 D GLU 34 -56.08 174.80 1 D GLN 61 37.42 42.80 1 D PRO 79 -78.12 47.81 1 D ILE 93 -95.41 30.16 1 E PRO 9 -67.87 54.18 1 E GLU 35 -15.70 112.05 1 E CYS 67 41.76 73.96 PARHCSDX.PRO TOPHCSDX.PRO PARAM19.SOL TOPH19.SOL NLE.PRO 0.26 0.0 0.0 0.0 0.3190000 0.1740000 0.1740000 2.0 8.0 1211 7.9 65.7 RANDOM 100000. 0.0 1 2. MOLECULAR REPLACEMENT PDB ENTRY 7HVP 2.0 8.0 159 3309 118 0 3032 0.02 2.47 27.08 2.22 0.4209000 0.3148000 2.09 31 407 438 7.1 2.0 8. 1A8K 10077 2. 0.1009000 0.1900000 1 2. 2.7 80.8 0.0920000 2.06 2.25 1 2.4 46.6 model building X-PLOR 3.1 refinement X-PLOR 3.1 data reduction R-AXIS data scaling R-AXIS phasing X-PLOR 3.1 CRYSTALLOGRAPHIC ANALYSIS OF HUMAN IMMUNODEFICIENCY VIRUS 1 PROTEASE WITH AN ANALOG OF THE CONSERVED CA-P2 SUBSTRATE: INTERACTIONS WITH FREQUENTLY OCCURRING GLUTAMIC ACID RESIDUE AT P2' POSITION OF SUBSTRATES 1 N N 1 N N 1 N N 1 N N 2 N N 2 N N 3 N N 3 N N 3 N N 3 N N A ARG 87 A ARG 87 HELX_P A LEU 90 A LEU 90 1 1 4 B ILE 66 B ILE 66 HELX_P B GLY 68 B GLY 68 5 2 3 B ARG 87 B ARG 87 HELX_P B ILE 93 B ILE 93 1 3 7 D ARG 87 C ARG 87 HELX_P D LEU 90 C LEU 90 1 4 4 E ARG 87 D ARG 87 HELX_P E LEU 90 D LEU 90 1 5 4 HYDROLASE/HYDROLASE INHIBITOR HUMAN IMMUNODEFICIENCY VIRUS PROTEASE, PROTON-MEDIATED INTERACTION, VIRAL MATURATION, HYDROLASE-HYDROLASE INHIBITOR COMPLEX POL_HV1BR UNP 1 1 P03367 FFREDLAFLQGKAREFSSEQTRANSPTISSEQTRANSPTRRELQVWGRDNNSLSEAGADRQGTVSFNFPQITLWQRPLVT IKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYDQILIEICGHKAIGTVLVGPTPVNIIGRNLLTQ IGCTLNFPISPIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVFAIKKKDSTKWRK LVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPLDEDFRKYTAFTIPSINNETPGIRYQYNVLPQGW KGSPAIFQSSMTKILEPFRKQNPDIVIYQYMDDLYVGSDLEIGQHRTKIEELRQHLLRWGLTTPDKKHQKEPPFLWMGYE LHPDKWTVQPIVLPEKDSWTVNDIQKLVGKLNWASQIYPGIKVRQLCKLLRGTKALTEVIPLTEEAELELAENREILKEP VHGVYYDPSKDLIAEIQKQGQGQWTYQIYQEPFKNLKTGKYARTRGAHTNDVKQLTEAVQKITTESIVIWGKTPKFKLPI QKETWETWWTEYWQATWIPEWEFVNTPPLVKLWYQLEKEPIVGAETFYVDGAASRETKLGKAGYVTNRGRQKVVTLTDTT NQKTELQAIHLALQDSGLEVNIVTDSQYALGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVS AGIRKVLFLDGIDKAQDEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGIWQLDCTHLEGKVI LVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSNFTSTTVKAACWWAGIKQEFGIPYNPQSQGVVES MNKELKKIIGQVRDQAEHLKTAVQMAVFIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDP LWKGPAKLLWKGEGAVVIQDNSDIKVVPRRKAKIIRDYGKQMAGDDCVASRQDED 69 167 1A8K 1 99 P03367 A 1 1 99 69 167 1A8K 1 99 P03367 B 1 1 99 69 167 1A8K 1 99 P03367 D 1 1 99 69 167 1A8K 1 99 P03367 E 1 1 99 1 GLN engineered mutation LYS 7 1A8K A P03367 UNP 75 7 1 LEU engineered mutation ILE 33 1A8K A P03367 UNP 101 33 1 LEU engineered mutation ILE 63 1A8K A P03367 UNP 131 63 2 GLN engineered mutation LYS 7 1A8K B P03367 UNP 75 7 2 LEU engineered mutation ILE 33 1A8K B P03367 UNP 101 33 2 LEU engineered mutation ILE 63 1A8K B P03367 UNP 131 63 3 GLN engineered mutation LYS 7 1A8K D P03367 UNP 75 7 3 LEU engineered mutation ILE 33 1A8K D P03367 UNP 101 33 3 LEU engineered mutation ILE 63 1A8K D P03367 UNP 131 63 4 GLN engineered mutation LYS 7 1A8K E P03367 UNP 75 7 4 LEU engineered mutation ILE 33 1A8K E P03367 UNP 101 33 4 LEU engineered mutation ILE 63 1A8K E P03367 UNP 131 63 4 2 2 2 4 2 4 3 2 4 2 anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel parallel anti-parallel anti-parallel anti-parallel A GLN 18 A GLN 18 A LEU 23 A LEU 23 A LEU 10 A LEU 10 A ILE 15 A ILE 15 A ILE 62 A ILE 62 A ILE 66 A ILE 66 A HIS 69 A HIS 69 A GLY 73 A GLY 73 A LYS 45 A LYS 45 A GLY 48 A GLY 48 A PHE 53 A PHE 53 A VAL 56 A VAL 56 A ARG 57 A ARG 57 A TYR 59 A TYR 59 A VAL 75 A VAL 75 A VAL 77 A VAL 77 B LEU 10 B LEU 10 B ILE 15 B ILE 15 B GLN 18 B GLN 18 B LEU 23 B LEU 23 B THR 31 B THR 31 B ILE 33 B ILE 33 B VAL 75 B VAL 75 B VAL 77 B VAL 77 B GLY 52 B GLY 52 B TYR 59 B TYR 59 B LYS 43 B LYS 43 B GLY 49 B GLY 49 B ILE 62 B ILE 62 B ILE 66 B ILE 66 B HIS 69 B HIS 69 B GLY 73 B GLY 73 D GLN 18 C GLN 18 D LEU 23 C LEU 23 D LEU 10 C LEU 10 D ILE 15 C ILE 15 D ILE 62 C ILE 62 D ILE 66 C ILE 66 D HIS 69 C HIS 69 D GLY 73 C GLY 73 D LYS 43 C LYS 43 D GLY 49 C GLY 49 D GLY 52 C GLY 52 D TYR 59 C TYR 59 D VAL 75 C VAL 75 D GLY 78 C GLY 78 E LEU 10 D LEU 10 E ILE 15 D ILE 15 E GLN 18 D GLN 18 E LEU 23 D LEU 23 E THR 31 D THR 31 E GLU 34 D GLU 34 E VAL 75 D VAL 75 E GLY 78 D GLY 78 E GLY 52 D GLY 52 E TYR 59 D TYR 59 E LYS 43 D LYS 43 E GLY 49 D GLY 49 E ILE 62 D ILE 62 E ILE 66 D ILE 66 E HIS 69 D HIS 69 E GLY 73 D GLY 73 BINDING SITE FOR RESIDUE 0Q4 A 100 A 0Q4 100 Software 23 BINDING SITE FOR RESIDUE 0Q4 E 100 E 0Q4 100 Software 28 A ASP 25 A ASP 25 23 1_555 A GLY 27 A GLY 27 23 1_555 A ALA 28 A ALA 28 23 1_555 A ASP 29 A ASP 29 23 1_555 A ASP 30 A ASP 30 23 1_555 A ILE 47 A ILE 47 23 1_555 A GLY 48 A GLY 48 23 1_555 A GLY 49 A GLY 49 23 1_555 A ILE 50 A ILE 50 23 1_555 A LEU 76 A LEU 76 23 1_555 A PRO 81 A PRO 81 23 1_555 A VAL 82 A VAL 82 23 1_555 A ILE 84 A ILE 84 23 1_555 A HOH 511 G HOH 23 1_555 B LEU 23 B LEU 23 23 1_555 B ASP 25 B ASP 25 23 1_555 B GLY 27 B GLY 27 23 1_555 B ALA 28 B ALA 28 23 1_555 B ASP 29 B ASP 29 23 1_555 B GLY 48 B GLY 48 23 1_555 B GLY 49 B GLY 49 23 1_555 B VAL 82 B VAL 82 23 1_555 B ILE 84 B ILE 84 23 1_555 B TRP 6 B TRP 6 28 1_455 D ARG 8 C ARG 8 28 1_555 D ASP 25 C ASP 25 28 1_555 D GLY 27 C GLY 27 28 1_555 D ALA 28 C ALA 28 28 1_555 D ASP 29 C ASP 29 28 1_555 D ASP 30 C ASP 30 28 1_555 D GLY 48 C GLY 48 28 1_555 D ILE 50 C ILE 50 28 1_555 D PRO 81 C PRO 81 28 1_555 D VAL 82 C VAL 82 28 1_555 D ILE 84 C ILE 84 28 1_555 D HOH 1767 I HOH 28 1_555 E LEU 23 D LEU 23 28 1_555 E ASP 25 D ASP 25 28 1_555 E GLY 27 D GLY 27 28 1_555 E ALA 28 D ALA 28 28 1_555 E ASP 29 D ASP 29 28 1_555 E ASP 30 D ASP 30 28 1_555 E VAL 32 D VAL 32 28 1_555 E LYS 45 D LYS 45 28 1_555 E MET 46 D MET 46 28 1_555 E ILE 47 D ILE 47 28 1_555 E GLY 48 D GLY 48 28 1_555 E GLY 49 D GLY 49 28 1_555 E ILE 50 D ILE 50 28 1_555 E PHE 53 D PHE 53 28 1_555 E HOH 1511 J HOH 28 1_555 4 P 1 1 21