0.010560 0.000000 0.000000 0.000000 0.010560 0.000000 0.000000 0.000000 0.008518 0.00000 0.00000 0.00000 Reed, C. Fu, Z.-Q. Wu, J. Xue, Y.-N. Harrison, R.W. Chen, M.-J. Weber, I.T. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 24 90.00 90.00 90.00 94.700 94.700 117.400 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking UK Protein Eng. PRENE9 0859 0269-2139 10 1101 1107 10.1093/protein/10.10.1101 9488135 Crystal structure of TNF-alpha mutant R31D with greater affinity for receptor R1 compared with R2. 1997 UK Protein Eng. PRENE9 0859 0269-2139 8 1233 Model Complexes of Tumor Necrosis Factor-Alpha with Receptors R1 and R2 1995 10.2210/pdb1a8m/pdb pdb_00001a8m 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 290 1 IMAGE PLATE 1994-07 RIGAKU NI M x-ray 1 1.5418 1.0 1.5418 ROTATING ANODE RIGAKU RUH2R 17328.551 TUMOR NECROSIS FACTOR ALPHA R31D 3 man polymer 18.015 water 69 nat water TNF-ALPHA no no VRSSSRTPSDKPVAHVVANPQAEGQLQWLNDRANALLANGVELRDNQLVVPSEGLYLIYSQVLFKGQGCPSTHVLLTHTI SRIAVSYQTKVNLLSAIKSPCQRETPEGAEAKPWYEPIYLGGVFQLEKGDRLSAEINRPDYLDFAESGQVYFGIIAL VRSSSRTPSDKPVAHVVANPQAEGQLQWLNDRANALLANGVELRDNQLVVPSEGLYLIYSQVLFKGQGCPSTHVLLTHTI SRIAVSYQTKVNLLSAIKSPCQRETPEGAEAKPWYEPIYLGGVFQLEKGDRLSAEINRPDYLDFAESGQVYFGIIAL A,B,C polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n human Homo Escherichia sample 9606 Homo sapiens 562 Escherichia coli 1 2.6 48.8 5.5 CRYSTALLIZED FROM 88% MGSO4, 1-2% PEG 400, 0.2 M MES, PH 5.5. database_2 pdbx_database_status struct_ref_seq_dif pdbx_initial_refinement_model repository Initial release Version format compliance Version format compliance Database references Other Refinement description 1 0 1998-06-17 1 1 2008-03-24 1 2 2011-07-13 1 3 2021-11-03 1 4 2023-08-02 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_database_status.process_site _struct_ref_seq_dif.details Y BNL 1998-03-27 REL REL HOH water 1TNF PDB ENTRY 1TNF PDB experimental model HOH 200 2 HOH HOH 200 A HOH 201 2 HOH HOH 201 A HOH 202 2 HOH HOH 202 A HOH 203 2 HOH HOH 203 A HOH 205 2 HOH HOH 205 A HOH 206 2 HOH HOH 206 A HOH 207 2 HOH HOH 207 A HOH 208 2 HOH HOH 208 A HOH 209 2 HOH HOH 209 A HOH 210 2 HOH HOH 210 A HOH 211 2 HOH HOH 211 A HOH 212 2 HOH HOH 212 A HOH 213 2 HOH HOH 213 A HOH 214 2 HOH HOH 214 A HOH 236 2 HOH HOH 236 A HOH 248 2 HOH HOH 248 A HOH 204 2 HOH HOH 204 B HOH 215 2 HOH HOH 215 B HOH 216 2 HOH HOH 216 B HOH 217 2 HOH HOH 217 B HOH 218 2 HOH HOH 218 B HOH 219 2 HOH HOH 219 B HOH 220 2 HOH HOH 220 B HOH 221 2 HOH HOH 221 B HOH 222 2 HOH HOH 222 B HOH 223 2 HOH HOH 223 B HOH 224 2 HOH HOH 224 B HOH 225 2 HOH HOH 225 B HOH 227 2 HOH HOH 227 B HOH 228 2 HOH HOH 228 B HOH 245 2 HOH HOH 245 B HOH 246 2 HOH HOH 246 B HOH 247 2 HOH HOH 247 B HOH 249 2 HOH HOH 249 B HOH 250 2 HOH HOH 250 B HOH 251 2 HOH HOH 251 B HOH 252 2 HOH HOH 252 B HOH 253 2 HOH HOH 253 B HOH 262 2 HOH HOH 262 B HOH 268 2 HOH HOH 268 B HOH 269 2 HOH HOH 269 B HOH 226 2 HOH HOH 226 C HOH 229 2 HOH HOH 229 C HOH 230 2 HOH HOH 230 C HOH 231 2 HOH HOH 231 C HOH 232 2 HOH HOH 232 C HOH 233 2 HOH HOH 233 C HOH 234 2 HOH HOH 234 C HOH 235 2 HOH HOH 235 C HOH 238 2 HOH HOH 238 C HOH 239 2 HOH HOH 239 C HOH 241 2 HOH HOH 241 C HOH 242 2 HOH HOH 242 C HOH 243 2 HOH HOH 243 C HOH 244 2 HOH HOH 244 C HOH 254 2 HOH HOH 254 C HOH 255 2 HOH HOH 255 C HOH 256 2 HOH HOH 256 C HOH 257 2 HOH HOH 257 C HOH 258 2 HOH HOH 258 C HOH 259 2 HOH HOH 259 C HOH 260 2 HOH HOH 260 C HOH 261 2 HOH HOH 261 C HOH 263 2 HOH HOH 263 C HOH 264 2 HOH HOH 264 C HOH 265 2 HOH HOH 265 C HOH 266 2 HOH HOH 266 C HOH 267 2 HOH HOH 267 C HOH 270 2 HOH HOH 270 C n 1 1 A n 2 2 A n 3 3 A n 4 4 A n 5 5 A ARG 6 n 6 ARG 6 A THR 7 n 7 THR 7 A PRO 8 n 8 PRO 8 A SER 9 n 9 SER 9 A ASP 10 n 10 ASP 10 A LYS 11 n 11 LYS 11 A PRO 12 n 12 PRO 12 A VAL 13 n 13 VAL 13 A ALA 14 n 14 ALA 14 A HIS 15 n 15 HIS 15 A VAL 16 n 16 VAL 16 A VAL 17 n 17 VAL 17 A ALA 18 n 18 ALA 18 A ASN 19 n 19 ASN 19 A PRO 20 n 20 PRO 20 A GLN 21 n 21 GLN 21 A ALA 22 n 22 ALA 22 A GLU 23 n 23 GLU 23 A GLY 24 n 24 GLY 24 A GLN 25 n 25 GLN 25 A LEU 26 n 26 LEU 26 A GLN 27 n 27 GLN 27 A TRP 28 n 28 TRP 28 A LEU 29 n 29 LEU 29 A ASN 30 n 30 ASN 30 A ASP 31 n 31 ASP 31 A ARG 32 n 32 ARG 32 A ALA 33 n 33 ALA 33 A ASN 34 n 34 ASN 34 A ALA 35 n 35 ALA 35 A LEU 36 n 36 LEU 36 A LEU 37 n 37 LEU 37 A ALA 38 n 38 ALA 38 A ASN 39 n 39 ASN 39 A GLY 40 n 40 GLY 40 A VAL 41 n 41 VAL 41 A GLU 42 n 42 GLU 42 A LEU 43 n 43 LEU 43 A ARG 44 n 44 ARG 44 A ASP 45 n 45 ASP 45 A ASN 46 n 46 ASN 46 A GLN 47 n 47 GLN 47 A LEU 48 n 48 LEU 48 A VAL 49 n 49 VAL 49 A VAL 50 n 50 VAL 50 A PRO 51 n 51 PRO 51 A SER 52 n 52 SER 52 A GLU 53 n 53 GLU 53 A GLY 54 n 54 GLY 54 A LEU 55 n 55 LEU 55 A TYR 56 n 56 TYR 56 A LEU 57 n 57 LEU 57 A ILE 58 n 58 ILE 58 A TYR 59 n 59 TYR 59 A SER 60 n 60 SER 60 A GLN 61 n 61 GLN 61 A VAL 62 n 62 VAL 62 A LEU 63 n 63 LEU 63 A PHE 64 n 64 PHE 64 A LYS 65 n 65 LYS 65 A GLY 66 n 66 GLY 66 A GLN 67 n 67 GLN 67 A GLY 68 n 68 GLY 68 A CYS 69 n 69 CYS 69 A PRO 70 n 70 PRO 70 A SER 71 n 71 SER 71 A THR 72 n 72 THR 72 A HIS 73 n 73 HIS 73 A VAL 74 n 74 VAL 74 A LEU 75 n 75 LEU 75 A LEU 76 n 76 LEU 76 A THR 77 n 77 THR 77 A HIS 78 n 78 HIS 78 A THR 79 n 79 THR 79 A ILE 80 n 80 ILE 80 A SER 81 n 81 SER 81 A ARG 82 n 82 ARG 82 A ILE 83 n 83 ILE 83 A ALA 84 n 84 ALA 84 A VAL 85 n 85 VAL 85 A SER 86 n 86 SER 86 A TYR 87 n 87 TYR 87 A GLN 88 n 88 GLN 88 A THR 89 n 89 THR 89 A LYS 90 n 90 LYS 90 A VAL 91 n 91 VAL 91 A ASN 92 n 92 ASN 92 A LEU 93 n 93 LEU 93 A LEU 94 n 94 LEU 94 A SER 95 n 95 SER 95 A ALA 96 n 96 ALA 96 A ILE 97 n 97 ILE 97 A LYS 98 n 98 LYS 98 A SER 99 n 99 SER 99 A PRO 100 n 100 PRO 100 A CYS 101 n 101 CYS 101 A GLN 102 n 102 GLN 102 A ARG 103 n 103 ARG 103 A GLU 104 n 104 GLU 104 A THR 105 n 105 THR 105 A PRO 106 n 106 PRO 106 A GLU 107 n 107 GLU 107 A GLY 108 n 108 GLY 108 A ALA 109 n 109 ALA 109 A GLU 110 n 110 GLU 110 A ALA 111 n 111 ALA 111 A LYS 112 n 112 LYS 112 A PRO 113 n 113 PRO 113 A TRP 114 n 114 TRP 114 A TYR 115 n 115 TYR 115 A GLU 116 n 116 GLU 116 A PRO 117 n 117 PRO 117 A ILE 118 n 118 ILE 118 A TYR 119 n 119 TYR 119 A LEU 120 n 120 LEU 120 A GLY 121 n 121 GLY 121 A GLY 122 n 122 GLY 122 A VAL 123 n 123 VAL 123 A PHE 124 n 124 PHE 124 A GLN 125 n 125 GLN 125 A LEU 126 n 126 LEU 126 A GLU 127 n 127 GLU 127 A LYS 128 n 128 LYS 128 A GLY 129 n 129 GLY 129 A ASP 130 n 130 ASP 130 A ARG 131 n 131 ARG 131 A LEU 132 n 132 LEU 132 A SER 133 n 133 SER 133 A ALA 134 n 134 ALA 134 A GLU 135 n 135 GLU 135 A ILE 136 n 136 ILE 136 A ASN 137 n 137 ASN 137 A ARG 138 n 138 ARG 138 A PRO 139 n 139 PRO 139 A ASP 140 n 140 ASP 140 A TYR 141 n 141 TYR 141 A LEU 142 n 142 LEU 142 A ASP 143 n 143 ASP 143 A PHE 144 n 144 PHE 144 A ALA 145 n 145 ALA 145 A GLU 146 n 146 GLU 146 A SER 147 n 147 SER 147 A GLY 148 n 148 GLY 148 A GLN 149 n 149 GLN 149 A VAL 150 n 150 VAL 150 A TYR 151 n 151 TYR 151 A PHE 152 n 152 PHE 152 A GLY 153 n 153 GLY 153 A ILE 154 n 154 ILE 154 A ILE 155 n 155 ILE 155 A ALA 156 n 156 ALA 156 A LEU 157 n 157 LEU 157 A n 1 1 B n 2 2 B n 3 3 B n 4 4 B n 5 5 B ARG 6 n 6 ARG 6 B THR 7 n 7 THR 7 B PRO 8 n 8 PRO 8 B SER 9 n 9 SER 9 B ASP 10 n 10 ASP 10 B LYS 11 n 11 LYS 11 B PRO 12 n 12 PRO 12 B VAL 13 n 13 VAL 13 B ALA 14 n 14 ALA 14 B HIS 15 n 15 HIS 15 B VAL 16 n 16 VAL 16 B VAL 17 n 17 VAL 17 B ALA 18 n 18 ALA 18 B ASN 19 n 19 ASN 19 B PRO 20 n 20 PRO 20 B GLN 21 n 21 GLN 21 B ALA 22 n 22 ALA 22 B GLU 23 n 23 GLU 23 B GLY 24 n 24 GLY 24 B GLN 25 n 25 GLN 25 B LEU 26 n 26 LEU 26 B GLN 27 n 27 GLN 27 B TRP 28 n 28 TRP 28 B LEU 29 n 29 LEU 29 B ASN 30 n 30 ASN 30 B ASP 31 n 31 ASP 31 B ARG 32 n 32 ARG 32 B ALA 33 n 33 ALA 33 B ASN 34 n 34 ASN 34 B ALA 35 n 35 ALA 35 B LEU 36 n 36 LEU 36 B LEU 37 n 37 LEU 37 B ALA 38 n 38 ALA 38 B ASN 39 n 39 ASN 39 B GLY 40 n 40 GLY 40 B VAL 41 n 41 VAL 41 B GLU 42 n 42 GLU 42 B LEU 43 n 43 LEU 43 B ARG 44 n 44 ARG 44 B ASP 45 n 45 ASP 45 B ASN 46 n 46 ASN 46 B GLN 47 n 47 GLN 47 B LEU 48 n 48 LEU 48 B VAL 49 n 49 VAL 49 B VAL 50 n 50 VAL 50 B PRO 51 n 51 PRO 51 B SER 52 n 52 SER 52 B GLU 53 n 53 GLU 53 B GLY 54 n 54 GLY 54 B LEU 55 n 55 LEU 55 B TYR 56 n 56 TYR 56 B LEU 57 n 57 LEU 57 B ILE 58 n 58 ILE 58 B TYR 59 n 59 TYR 59 B SER 60 n 60 SER 60 B GLN 61 n 61 GLN 61 B VAL 62 n 62 VAL 62 B LEU 63 n 63 LEU 63 B PHE 64 n 64 PHE 64 B LYS 65 n 65 LYS 65 B GLY 66 n 66 GLY 66 B GLN 67 n 67 GLN 67 B GLY 68 n 68 GLY 68 B CYS 69 n 69 CYS 69 B PRO 70 n 70 PRO 70 B SER 71 n 71 SER 71 B THR 72 n 72 THR 72 B HIS 73 n 73 HIS 73 B VAL 74 n 74 VAL 74 B LEU 75 n 75 LEU 75 B LEU 76 n 76 LEU 76 B THR 77 n 77 THR 77 B HIS 78 n 78 HIS 78 B THR 79 n 79 THR 79 B ILE 80 n 80 ILE 80 B SER 81 n 81 SER 81 B ARG 82 n 82 ARG 82 B ILE 83 n 83 ILE 83 B ALA 84 n 84 ALA 84 B VAL 85 n 85 VAL 85 B SER 86 n 86 SER 86 B TYR 87 n 87 TYR 87 B GLN 88 n 88 GLN 88 B THR 89 n 89 THR 89 B LYS 90 n 90 LYS 90 B VAL 91 n 91 VAL 91 B ASN 92 n 92 ASN 92 B LEU 93 n 93 LEU 93 B LEU 94 n 94 LEU 94 B SER 95 n 95 SER 95 B ALA 96 n 96 ALA 96 B ILE 97 n 97 ILE 97 B LYS 98 n 98 LYS 98 B SER 99 n 99 SER 99 B PRO 100 n 100 PRO 100 B CYS 101 n 101 CYS 101 B GLN 102 n 102 GLN 102 B ARG 103 n 103 ARG 103 B GLU 104 n 104 GLU 104 B THR 105 n 105 THR 105 B PRO 106 n 106 PRO 106 B GLU 107 n 107 GLU 107 B GLY 108 n 108 GLY 108 B ALA 109 n 109 ALA 109 B GLU 110 n 110 GLU 110 B ALA 111 n 111 ALA 111 B LYS 112 n 112 LYS 112 B PRO 113 n 113 PRO 113 B TRP 114 n 114 TRP 114 B TYR 115 n 115 TYR 115 B GLU 116 n 116 GLU 116 B PRO 117 n 117 PRO 117 B ILE 118 n 118 ILE 118 B TYR 119 n 119 TYR 119 B LEU 120 n 120 LEU 120 B GLY 121 n 121 GLY 121 B GLY 122 n 122 GLY 122 B VAL 123 n 123 VAL 123 B PHE 124 n 124 PHE 124 B GLN 125 n 125 GLN 125 B LEU 126 n 126 LEU 126 B GLU 127 n 127 GLU 127 B LYS 128 n 128 LYS 128 B GLY 129 n 129 GLY 129 B ASP 130 n 130 ASP 130 B ARG 131 n 131 ARG 131 B LEU 132 n 132 LEU 132 B SER 133 n 133 SER 133 B ALA 134 n 134 ALA 134 B GLU 135 n 135 GLU 135 B ILE 136 n 136 ILE 136 B ASN 137 n 137 ASN 137 B ARG 138 n 138 ARG 138 B PRO 139 n 139 PRO 139 B ASP 140 n 140 ASP 140 B TYR 141 n 141 TYR 141 B LEU 142 n 142 LEU 142 B ASP 143 n 143 ASP 143 B PHE 144 n 144 PHE 144 B ALA 145 n 145 ALA 145 B GLU 146 n 146 GLU 146 B SER 147 n 147 SER 147 B GLY 148 n 148 GLY 148 B GLN 149 n 149 GLN 149 B VAL 150 n 150 VAL 150 B TYR 151 n 151 TYR 151 B PHE 152 n 152 PHE 152 B GLY 153 n 153 GLY 153 B ILE 154 n 154 ILE 154 B ILE 155 n 155 ILE 155 B ALA 156 n 156 ALA 156 B LEU 157 n 157 LEU 157 B n 1 1 C n 2 2 C n 3 3 C n 4 4 C n 5 5 C ARG 6 n 6 ARG 6 C THR 7 n 7 THR 7 C PRO 8 n 8 PRO 8 C SER 9 n 9 SER 9 C ASP 10 n 10 ASP 10 C LYS 11 n 11 LYS 11 C PRO 12 n 12 PRO 12 C VAL 13 n 13 VAL 13 C ALA 14 n 14 ALA 14 C HIS 15 n 15 HIS 15 C VAL 16 n 16 VAL 16 C VAL 17 n 17 VAL 17 C ALA 18 n 18 ALA 18 C ASN 19 n 19 ASN 19 C PRO 20 n 20 PRO 20 C GLN 21 n 21 GLN 21 C ALA 22 n 22 ALA 22 C GLU 23 n 23 GLU 23 C GLY 24 n 24 GLY 24 C GLN 25 n 25 GLN 25 C LEU 26 n 26 LEU 26 C GLN 27 n 27 GLN 27 C TRP 28 n 28 TRP 28 C LEU 29 n 29 LEU 29 C ASN 30 n 30 ASN 30 C ASP 31 n 31 ASP 31 C ARG 32 n 32 ARG 32 C ALA 33 n 33 ALA 33 C ASN 34 n 34 ASN 34 C ALA 35 n 35 ALA 35 C LEU 36 n 36 LEU 36 C LEU 37 n 37 LEU 37 C ALA 38 n 38 ALA 38 C ASN 39 n 39 ASN 39 C GLY 40 n 40 GLY 40 C VAL 41 n 41 VAL 41 C GLU 42 n 42 GLU 42 C LEU 43 n 43 LEU 43 C ARG 44 n 44 ARG 44 C ASP 45 n 45 ASP 45 C ASN 46 n 46 ASN 46 C GLN 47 n 47 GLN 47 C LEU 48 n 48 LEU 48 C VAL 49 n 49 VAL 49 C VAL 50 n 50 VAL 50 C PRO 51 n 51 PRO 51 C SER 52 n 52 SER 52 C GLU 53 n 53 GLU 53 C GLY 54 n 54 GLY 54 C LEU 55 n 55 LEU 55 C TYR 56 n 56 TYR 56 C LEU 57 n 57 LEU 57 C ILE 58 n 58 ILE 58 C TYR 59 n 59 TYR 59 C SER 60 n 60 SER 60 C GLN 61 n 61 GLN 61 C VAL 62 n 62 VAL 62 C LEU 63 n 63 LEU 63 C PHE 64 n 64 PHE 64 C LYS 65 n 65 LYS 65 C GLY 66 n 66 GLY 66 C GLN 67 n 67 GLN 67 C GLY 68 n 68 GLY 68 C CYS 69 n 69 CYS 69 C PRO 70 n 70 PRO 70 C SER 71 n 71 SER 71 C THR 72 n 72 THR 72 C HIS 73 n 73 HIS 73 C VAL 74 n 74 VAL 74 C LEU 75 n 75 LEU 75 C LEU 76 n 76 LEU 76 C THR 77 n 77 THR 77 C HIS 78 n 78 HIS 78 C THR 79 n 79 THR 79 C ILE 80 n 80 ILE 80 C SER 81 n 81 SER 81 C ARG 82 n 82 ARG 82 C ILE 83 n 83 ILE 83 C ALA 84 n 84 ALA 84 C VAL 85 n 85 VAL 85 C SER 86 n 86 SER 86 C TYR 87 n 87 TYR 87 C GLN 88 n 88 GLN 88 C THR 89 n 89 THR 89 C LYS 90 n 90 LYS 90 C VAL 91 n 91 VAL 91 C ASN 92 n 92 ASN 92 C LEU 93 n 93 LEU 93 C LEU 94 n 94 LEU 94 C SER 95 n 95 SER 95 C ALA 96 n 96 ALA 96 C ILE 97 n 97 ILE 97 C LYS 98 n 98 LYS 98 C SER 99 n 99 SER 99 C PRO 100 n 100 PRO 100 C CYS 101 n 101 CYS 101 C GLN 102 n 102 GLN 102 C ARG 103 n 103 ARG 103 C GLU 104 n 104 GLU 104 C THR 105 n 105 THR 105 C PRO 106 n 106 PRO 106 C GLU 107 n 107 GLU 107 C GLY 108 n 108 GLY 108 C ALA 109 n 109 ALA 109 C GLU 110 n 110 GLU 110 C ALA 111 n 111 ALA 111 C LYS 112 n 112 LYS 112 C PRO 113 n 113 PRO 113 C TRP 114 n 114 TRP 114 C TYR 115 n 115 TYR 115 C GLU 116 n 116 GLU 116 C PRO 117 n 117 PRO 117 C ILE 118 n 118 ILE 118 C TYR 119 n 119 TYR 119 C LEU 120 n 120 LEU 120 C GLY 121 n 121 GLY 121 C GLY 122 n 122 GLY 122 C VAL 123 n 123 VAL 123 C PHE 124 n 124 PHE 124 C GLN 125 n 125 GLN 125 C LEU 126 n 126 LEU 126 C GLU 127 n 127 GLU 127 C LYS 128 n 128 LYS 128 C GLY 129 n 129 GLY 129 C ASP 130 n 130 ASP 130 C ARG 131 n 131 ARG 131 C LEU 132 n 132 LEU 132 C SER 133 n 133 SER 133 C ALA 134 n 134 ALA 134 C GLU 135 n 135 GLU 135 C ILE 136 n 136 ILE 136 C ASN 137 n 137 ASN 137 C ARG 138 n 138 ARG 138 C PRO 139 n 139 PRO 139 C ASP 140 n 140 ASP 140 C TYR 141 n 141 TYR 141 C LEU 142 n 142 LEU 142 C ASP 143 n 143 ASP 143 C PHE 144 n 144 PHE 144 C ALA 145 n 145 ALA 145 C GLU 146 n 146 GLU 146 C SER 147 n 147 SER 147 C GLY 148 n 148 GLY 148 C GLN 149 n 149 GLN 149 C VAL 150 n 150 VAL 150 C TYR 151 n 151 TYR 151 C PHE 152 n 152 PHE 152 C GLY 153 n 153 GLY 153 C ILE 154 n 154 ILE 154 C ILE 155 n 155 ILE 155 C ALA 156 n 156 ALA 156 C LEU 157 n 157 LEU 157 C author_and_software_defined_assembly PISA 3 trimeric 7470 -38 17930 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A O LEU 36 A O LEU 36 A N HIS 15 A N HIS 15 A N ALA 18 A N ALA 18 A O VAL 150 A O VAL 150 A N TYR 151 A N TYR 151 A O GLN 61 A O GLN 61 A O GLY 54 A O GLY 54 A N LEU 126 A N LEU 126 A N ARG 44 A N ARG 44 A O GLN 47 A O GLN 47 A O VAL 50 A O VAL 50 A N GLY 129 A N GLY 129 A O GLU 135 A O GLU 135 A N THR 79 A N THR 79 A O ARG 82 A O ARG 82 A N VAL 91 A N VAL 91 B O LEU 36 B O LEU 36 B N HIS 15 B N HIS 15 B N ALA 18 B N ALA 18 B O VAL 150 B O VAL 150 B N TYR 151 B N TYR 151 B O GLN 61 B O GLN 61 B O GLY 54 B O GLY 54 B N LEU 126 B N LEU 126 B N ARG 44 B N ARG 44 B O GLN 47 B O GLN 47 B O VAL 50 B O VAL 50 B N GLY 129 B N GLY 129 B O GLU 135 B O GLU 135 B N THR 79 B N THR 79 B O ARG 82 B O ARG 82 B N VAL 91 B N VAL 91 C O LEU 36 C O LEU 36 C N HIS 15 C N HIS 15 C N ALA 18 C N ALA 18 C O VAL 150 C O VAL 150 C N TYR 151 C N TYR 151 C O GLN 61 C O GLN 61 C O GLY 54 C O GLY 54 C N LEU 126 C N LEU 126 C N ARG 44 C N ARG 44 C O GLN 47 C O GLN 47 C O VAL 50 C O VAL 50 C N GLY 129 C N GLY 129 C O GLU 135 C O GLU 135 C N THR 79 C N THR 79 C O ARG 82 C O ARG 82 C N VAL 91 C N VAL 91 1 A VAL 1 A VAL 1 1 Y 1 A ARG 2 A ARG 2 1 Y 1 A SER 3 A SER 3 1 Y 1 A SER 4 A SER 4 1 Y 1 A SER 5 A SER 5 1 Y 1 B VAL 1 B VAL 1 1 Y 1 B ARG 2 B ARG 2 1 Y 1 B SER 3 B SER 3 1 Y 1 B SER 4 B SER 4 1 Y 1 B SER 5 B SER 5 1 Y 1 C VAL 1 C VAL 1 1 Y 1 C ARG 2 C ARG 2 1 Y 1 C SER 3 C SER 3 1 Y 1 C SER 4 C SER 4 1 Y 1 C SER 5 C SER 5 1 Y 1 13.52 1.50 119.30 132.82 A A A C N CA LYS PRO PRO 112 113 113 Y 1 -12.79 2.10 128.40 115.61 A A A C N CD LYS PRO PRO 112 113 113 Y 1 17.78 2.30 115.30 133.08 A A A CA CB CG LEU LEU LEU 157 157 157 N 1 11.86 1.50 119.30 131.16 B B B C N CA THR PRO PRO 105 106 106 Y 1 21.86 2.70 111.00 132.86 B B B N CA C PHE PHE PHE 144 144 144 N 1 -17.70 2.70 111.00 93.30 B B B N CA C SER SER SER 147 147 147 N 1 -17.54 2.70 111.00 93.46 C C C N CA C LEU LEU LEU 37 37 37 N 1 B A NH2 O ARG HOH 131 212 1.82 1_555 4_454 1 A B NE2 O GLN ASP 88 31 1.90 1_555 8_665 1 A SER 9 47.91 145.47 1 A HIS 15 -172.50 82.11 1 A PRO 20 -77.03 37.07 1 A ALA 33 49.00 -136.42 1 A ASN 34 -109.91 41.31 1 A ALA 35 -61.82 74.47 1 A LEU 37 -162.59 61.83 1 A ALA 38 -72.06 -159.43 1 A ASN 39 -27.60 68.33 1 A ARG 44 -111.60 -104.87 1 A ASP 45 -81.50 42.80 1 A ASN 46 84.43 28.74 1 A GLU 53 -56.99 173.99 1 A PRO 70 -89.23 -118.76 1 A THR 72 -16.01 -29.97 1 A LEU 75 68.37 81.07 1 A CYS 101 64.72 90.48 1 A ARG 103 61.39 -83.08 1 A GLU 104 47.75 -90.22 1 A THR 105 61.22 67.88 1 A ALA 109 -102.35 49.61 1 A LEU 120 169.47 147.04 1 A PHE 144 -140.02 -0.36 1 A SER 147 -90.56 -82.34 1 A GLN 149 -125.59 -76.49 1 A PHE 152 -175.71 120.25 1 B PRO 8 -76.32 30.73 1 B SER 9 48.08 -160.71 1 B ALA 14 179.53 129.44 1 B ASP 31 162.25 22.33 1 B LEU 37 -166.04 70.05 1 B ARG 44 -103.89 -96.07 1 B THR 72 63.62 111.11 1 B SER 86 -65.98 -77.44 1 B LEU 93 -81.63 -92.09 1 B ALA 96 -172.26 140.13 1 B GLN 102 -129.93 -50.46 1 B ARG 103 -31.01 161.84 1 B THR 105 80.71 95.25 1 B PRO 106 -1.74 153.96 1 B GLU 107 -158.78 -92.08 1 B ALA 109 -169.29 119.31 1 B GLU 110 -73.93 -168.24 1 B ALA 111 49.74 -139.21 1 B LYS 112 73.94 96.21 1 B SER 133 -171.18 117.83 1 B PHE 144 -154.12 45.64 1 B ALA 145 -93.56 48.39 1 B GLU 146 -74.54 -95.77 1 B SER 147 79.66 94.39 1 C SER 9 52.80 115.62 1 C ASP 10 -87.99 -137.06 1 C LYS 11 77.60 132.53 1 C PRO 20 -59.03 -87.14 1 C GLN 21 -53.57 84.18 1 C ALA 22 -165.92 63.73 1 C GLU 23 -30.23 109.68 1 C GLN 25 -136.24 -30.06 1 C LEU 26 61.66 78.29 1 C ASP 31 95.20 -39.42 1 C ARG 32 -55.96 177.34 1 C ALA 33 15.17 -112.02 1 C LEU 37 -167.05 119.19 1 C VAL 41 -110.30 62.84 1 C GLU 42 -47.00 152.08 1 C SER 52 88.69 144.84 1 C SER 60 -173.20 148.52 1 C SER 71 -101.51 47.27 1 C THR 72 -144.79 22.42 1 C HIS 73 47.78 99.82 1 C SER 86 -70.40 -89.51 1 C GLN 88 64.15 -19.78 1 C ARG 103 34.19 107.00 1 C GLU 104 -124.10 -58.01 1 C THR 105 64.66 96.78 1 C PRO 106 -54.25 109.06 1 C ALA 111 97.01 177.14 1 C LYS 112 136.15 108.26 1 C LYS 128 -33.25 109.96 1 C ARG 138 -113.71 75.89 1 C TYR 141 -110.30 54.05 1 C GLU 146 19.38 92.26 1 C SER 147 -93.86 -75.67 1 C ILE 155 -175.71 135.87 PARHCSDX.PRO TOPHCSDX.PRO 38.0 0.24 0.218 0.218 2.3 10.0 1171 21396 8.0 97.3 RANDOM 1 THROUGHOUT 2.0 MOLECULAR REPLACEMENT PDB ENTRY 1TNF 2.3 10.0 69 4416 0 0 4347 0.013 2.3 2.3 10.0 1A8M 21396 2. 0.078 1 7.8 4.0 97.3 2.3 2.4 1.8 data collection PROCESS data reduction PROCESS model building X-PLOR 3.1 refinement X-PLOR 3.1 data scaling PROCESS phasing X-PLOR 3.1 TUMOR NECROSIS FACTOR ALPHA, R31D MUTANT 1 N N 1 N N 1 N N 2 N N 2 N N 2 N N A ARG 138 A ARG 138 HELX_P A LEU 142 A LEU 142 5 H1A 5 B ARG 138 B ARG 138 HELX_P B LEU 142 B LEU 142 5 H1B 5 C ARG 138 C ARG 138 HELX_P C LEU 142 C LEU 142 5 H1C 5 disulf 2.555 A CYS 69 A SG CYS 69 1_555 A CYS 101 A SG CYS 101 1_555 disulf 2.395 B CYS 69 B SG CYS 69 1_555 B CYS 101 B SG CYS 101 1_555 disulf 2.358 C CYS 69 C SG CYS 69 1_555 C CYS 101 C SG CYS 101 1_555 LYMPHOKINE LYMPHOKINE, CYTOKINE, CYTOTOXIN given 0.040460 -0.105750 0.993570 -0.980650 0.186430 0.059780 -0.191550 -0.976760 -0.096160 -16.17000 57.43000 96.33000 given -0.028960 -0.992710 -0.116990 -0.202020 0.120440 -0.971950 0.978950 -0.004510 -0.204040 74.40000 87.33000 28.89000 given -0.012020 -0.163460 0.986460 -0.986560 0.162730 0.014940 -0.162970 -0.973040 -0.163220 -11.46000 60.62000 97.89000 TNFA_HUMAN UNP 1 1 P01375 MSTESMIRDVELAEEALPKKTGGPQGSRRCLFLSLFSFLIVAGATTLFCLLHFGVIGPQREEFPRDLSLISPLAQAVRSS SRTPSDKPVAHVVANPQAEGQLQWLNRRANALLANGVELRDNQLVVPSEGLYLIYSQVLFKGQGCPSTHVLLTHTISRIA VSYQTKVNLLSAIKSPCQRETPEGAEAKPWYEPIYLGGVFQLEKGDRLSAEINRPDYLDFAESGQVYFGIIAL 77 233 1A8M 1 157 P01375 A 1 1 157 77 233 1A8M 1 157 P01375 B 1 1 157 77 233 1A8M 1 157 P01375 C 1 1 157 1 ARG engineered mutation ASP 31 1A8M A P01375 UNP 107 31 2 ARG engineered mutation ASP 31 1A8M B P01375 UNP 107 31 3 ARG engineered mutation ASP 31 1A8M C P01375 UNP 107 31 5 5 5 5 5 5 anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel A LEU 36 A LEU 36 A ALA 38 A ALA 38 A PRO 12 A PRO 12 A ALA 18 A ALA 18 A VAL 150 A VAL 150 A LEU 157 A LEU 157 A GLY 54 A GLY 54 A GLY 68 A GLY 68 A LYS 112 A LYS 112 A LEU 126 A LEU 126 A GLU 42 A GLU 42 A ARG 44 A ARG 44 A GLN 47 A GLN 47 A VAL 50 A VAL 50 A GLY 129 A GLY 129 A ILE 136 A ILE 136 A LEU 76 A LEU 76 A ALA 84 A ALA 84 A GLN 88 A GLN 88 A LYS 98 A LYS 98 B LEU 36 B LEU 36 B ALA 38 B ALA 38 B PRO 12 B PRO 12 B ALA 18 B ALA 18 B VAL 150 B VAL 150 B LEU 157 B LEU 157 B GLY 54 B GLY 54 B GLY 68 B GLY 68 B LYS 112 B LYS 112 B LEU 126 B LEU 126 B GLU 42 B GLU 42 B ARG 44 B ARG 44 B GLN 47 B GLN 47 B VAL 50 B VAL 50 B GLY 129 B GLY 129 B ILE 136 B ILE 136 B LEU 76 B LEU 76 B ALA 84 B ALA 84 B GLN 88 B GLN 88 B LYS 98 B LYS 98 C LEU 36 C LEU 36 C ALA 38 C ALA 38 C PRO 12 C PRO 12 C ALA 18 C ALA 18 C VAL 150 C VAL 150 C LEU 157 C LEU 157 C GLY 54 C GLY 54 C GLY 68 C GLY 68 C LYS 112 C LYS 112 C LEU 126 C LEU 126 C GLU 42 C GLU 42 C ARG 44 C ARG 44 C GLN 47 C GLN 47 C VAL 50 C VAL 50 C GLY 129 C GLY 129 C ILE 136 C ILE 136 C LEU 76 C LEU 76 C ALA 84 C ALA 84 C GLN 88 C GLN 88 C LYS 98 C LYS 98 92 P 41 21 2