1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 Beger, R.D. Bolton, P.H. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 1 90.00 90.00 90.00 1.000 1.000 1.000 C5 H11 O7 P 214.110 2'-DEOXY-RIBOFURANOSE-5'-MONOPHOSPHATE ABASIC DEOXYRIBOSE DNA linking C10 H14 N5 O6 P 331.222 y 2'-DEOXYADENOSINE-5'-MONOPHOSPHATE DNA linking C9 H14 N3 O7 P 307.197 y 2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE DNA linking C10 H14 N5 O7 P 347.221 y 2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE DNA linking C10 H15 N2 O8 P 322.208 y THYMIDINE-5'-MONOPHOSPHATE DNA linking H2 O 18.015 WATER non-polymer N 1 N P N 2 N O N 3 N O N 4 N O N 5 N O N 6 N C N 7 R C N 8 N O N 9 R C N 10 N O N 11 N C N 12 S C N 13 N O N 14 N H N 15 N H N 16 N H N 17 N H N 18 N H N 19 N H N 20 N H N 21 N H N 22 N H N 23 N H N 24 N H N 25 N O N 26 N P N 27 N O N 28 N O N 29 N O N 30 N C N 31 R C N 32 N O N 33 S C N 34 N O N 35 N C N 36 R C Y 37 N N Y 38 N C Y 39 N N Y 40 N C Y 41 N C N 42 N N Y 43 N N Y 44 N C Y 45 N N Y 46 N C N 47 N H N 48 N H N 49 N H N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N H N 59 N H N 60 N H N 61 N O N 62 N P N 63 N O N 64 N O N 65 N O N 66 N C N 67 R C N 68 N O N 69 S C N 70 N O N 71 N C N 72 R C N 73 N N N 74 N C N 75 N O N 76 N N N 77 N C N 78 N N N 79 N C N 80 N C N 81 N H N 82 N H N 83 N H N 84 N H N 85 N H N 86 N H N 87 N H N 88 N H N 89 N H N 90 N H N 91 N H N 92 N H N 93 N H N 94 N H N 95 N O N 96 N P N 97 N O N 98 N O N 99 N O N 100 N C N 101 R C N 102 N O N 103 S C N 104 N O N 105 N C N 106 R C Y 107 N N Y 108 N C Y 109 N N Y 110 N C N 111 N C N 112 N O N 113 N N N 114 N C N 115 N N N 116 N N Y 117 N C N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N H N 124 N H N 125 N H N 126 N H N 127 N H N 128 N H N 129 N H N 130 N H N 131 N H N 132 N O N 133 N P N 134 N O N 135 N O N 136 N O N 137 N C N 138 R C N 139 N O N 140 S C N 141 N O N 142 N C N 143 R C N 144 N N N 145 N C N 146 N O N 147 N N N 148 N C N 149 N O N 150 N C N 151 N C N 152 N C N 153 N H N 154 N H N 155 N H N 156 N H N 157 N H N 158 N H N 159 N H N 160 N H N 161 N H N 162 N H N 163 N H N 164 N H N 165 N H N 166 N H N 167 N H N 168 N O N 169 N H N 170 N H N 1 N sing N 2 N doub N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N sing N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N sing N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N doub N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N sing N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N sing N 46 N sing N 47 N sing Y 48 N sing Y 49 N sing Y 50 N doub N 51 N sing Y 52 N sing Y 53 N sing Y 54 N doub N 55 N sing Y 56 N doub N 57 N sing N 58 N sing Y 59 N sing Y 60 N doub N 61 N sing Y 62 N sing N 63 N sing N 64 N sing N 65 N doub N 66 N sing N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N sing N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N doub N 89 N sing N 90 N doub N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N doub N 96 N sing N 97 N sing N 98 N sing N 99 N sing N 100 N doub N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N sing N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N sing N 117 N sing N 118 N sing N 119 N sing N 120 N sing Y 121 N sing Y 122 N sing Y 123 N doub N 124 N sing Y 125 N sing N 126 N sing Y 127 N doub N 128 N doub N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N doub N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N sing N 139 N doub N 140 N sing N 141 N sing N 142 N sing N 143 N sing N 144 N sing N 145 N sing N 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N sing N 159 N sing N 160 N sing N 161 N sing N 162 N doub N 163 N sing N 164 N sing N 165 N sing N 166 N doub N 167 N sing N 168 N sing N 169 N doub N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing US J.Biol.Chem. JBCHA3 0071 0021-9258 273 15565 15573 10.1074/jbc.273.25.15565 9624147 Structures of apurinic and apyrimidinic sites in duplex DNAs. 1998 10.2210/pdb1a9h/pdb pdb_00001a9h 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 3211.077 DNA (5'-D(*CP*GP*CP*GP*AP*AABP*AP*CP*GP*CP*C)-3') 1 syn polymer 3366.184 DNA (5'-D(*GP*GP*CP*GP*TP*CP*TP*CP*GP*CP*G)-3') 1 syn polymer 18.015 water 1 nat water no yes (DC)(DG)(DC)(DG)(DA)(AAB)(DA)(DC)(DG)(DC)(DC) CGCGAXACGCC A polydeoxyribonucleotide no no (DG)(DG)(DC)(DG)(DT)(DC)(DT)(DC)(DG)(DC)(DG) GGCGTCTCGCG B polydeoxyribonucleotide n n n n n n n n n n n n n n n n n n n n n n -4.613 1 19 A 1 B 22 -0.630 A_DC1:DG22_B 1 -5.416 0.701 0.239 -0.594 -0.684 1 19 A 2 B 21 1.261 A_DG2:DC21_B 2 -7.385 -0.607 0.260 -0.545 -0.292 1 19 A 3 B 20 -0.516 A_DC3:DG20_B 3 -5.993 0.566 0.083 -0.452 5.628 1 19 A 4 B 19 -0.638 A_DG4:DC19_B 4 -12.971 -0.534 0.221 -0.344 19.268 1 20 A 5 B 18 -4.927 A_DA5:DT18_B 5 -4.457 0.106 0.393 -0.145 3.269 1 20 A 7 B 16 -1.102 A_DA7:DT16_B 6 -23.574 0.143 -0.184 -0.138 12.359 1 19 A 8 B 15 0.979 A_DC8:DG15_B 7 -18.542 0.359 -0.100 -0.226 5.726 1 19 A 9 B 14 0.168 A_DG9:DC14_B 8 -4.139 -0.430 0.298 -0.422 11.959 1 19 A 10 B 13 -0.178 A_DC10:DG13_B 9 -2.684 0.455 -0.153 -0.466 18.182 1 19 A 11 B 12 -3.311 A_DC11:DG12_B 10 -4.612 0.541 -0.490 -0.582 2.558 33.532 A A 1 2 12.075 B B 22 21 2.775 6.917 -0.427 -0.880 AA_DC1DG2:DC21DG22_BB 1 -1.518 2.650 32.796 -2.462 0.534 2.999 43.512 A A 2 3 2.729 B B 21 20 3.033 2.022 -0.300 -0.687 AA_DG2DC3:DG20DC21_BB 2 -0.014 0.019 43.467 -1.107 0.404 2.728 31.133 A A 3 4 11.135 B B 20 19 2.889 5.941 0.160 -0.593 AA_DC3DG4:DC19DG20_BB 3 -0.058 0.109 30.574 -2.088 -0.308 2.971 38.963 A A 4 5 -1.508 B B 19 18 2.887 -1.002 -0.823 -0.013 AA_DG4DA5:DT18DC19_BB 4 -5.555 8.355 38.568 0.090 0.628 2.933 35.495 A A 7 8 -5.521 B B 16 15 2.882 -3.360 1.162 -0.159 AA_DA7DC8:DG15DT16_BB 5 1.645 -2.703 35.303 0.178 -1.691 2.415 30.110 A A 8 9 20.917 B B 15 14 3.149 10.613 0.787 -1.202 AA_DC8DG9:DC14DG15_BB 6 -3.843 7.574 27.960 -4.231 -2.210 3.032 43.321 A A 9 10 -1.765 B B 14 13 3.038 -1.302 -0.421 -0.722 AA_DG9DC10:DG13DC14_BB 7 2.354 -3.191 43.241 -0.860 0.783 3.113 37.553 A A 10 11 -3.773 B B 13 12 3.070 -2.427 -0.504 -0.716 AA_DC10DC11:DG12DG13_BB 8 -0.339 0.526 37.476 -0.813 0.742 chem_comp_atom chem_comp_bond database_2 pdbx_database_status struct_conn repository Initial release Version format compliance Version format compliance Non-polymer description Data collection Database references Derived calculations Other 1 0 1998-07-15 1 1 2008-03-24 1 2 2011-07-13 1 3 2014-07-09 1 4 2024-04-10 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_database_status.process_site _struct_conn.pdbx_leaving_atom_flag _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id Y BNL 1998-04-06 REL HOH water 100MS NOESY, 250MS NOESY 250MS QUIETNOESY 70MS BAND-SELECTIVE J TOCSY FOR PHOSPHOROUS "J SCALE" SET TO 2 AND 3 AVERAGE OF 5 STRUCTURES THAT THE NOESY BACKCALCULATION AGREES WITH EXPERIMENTAL NOESY 100 1 NOESY PECOSY TOCSY ROESY QUIET-NOESY 50 mM KCL 7.0 1 atm 300 K matrix relaxation TRIS BRUNGER refinement X-PLOR 3.1 structure solution VNMR 400 Varian UNITY 500 Varian INOVA HOH 23 3 HOH HOH 23 A C 1 n 1 DC 1 A G 2 n 2 DG 2 A C 3 n 3 DC 3 A G 4 n 4 DG 4 A A 5 n 5 DA 5 A AAB 6 n 6 AAB 6 A A 7 n 7 DA 7 A C 8 n 8 DC 8 A G 9 n 9 DG 9 A C 10 n 10 DC 10 A C 11 n 11 DC 11 A G 12 n 1 DG 12 B G 13 n 2 DG 13 B C 14 n 3 DC 14 B G 15 n 4 DG 15 B T 16 n 5 DT 16 B C 17 n 6 DC 17 B T 18 n 7 DT 18 B C 19 n 8 DC 19 B G 20 n 9 DG 20 B C 21 n 10 DC 21 B G 22 n 11 DG 22 B author_defined_assembly 2 dimeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 1 B C3' DG 22 WRONG HAND 1 A A O1' H1 AAB HOH 6 23 1.59 1 4.34 0.60 106.00 110.34 A A A O4' C4' C3' DC DC DC 1 1 1 N 1 -5.39 0.80 105.90 100.51 A A A O4' C1' C2' DC DC DC 1 1 1 N 1 2.55 0.40 120.30 122.85 A A A C6 N1 C2 DC DC DC 1 1 1 N 1 5.54 0.60 118.90 124.44 A A A N1 C2 O2 DC DC DC 1 1 1 N 1 3.76 0.60 106.00 109.76 A A A O4' C4' C3' DG DG DG 2 2 2 N 1 -6.00 0.70 102.20 96.20 A A A C4' C3' C2' DG DG DG 2 2 2 N 1 7.94 1.20 119.70 127.64 A A A C3' O3' P DG DG DC 2 2 3 Y 1 3.97 0.60 106.00 109.97 A A A O4' C4' C3' DC DC DC 3 3 3 N 1 -2.59 0.40 121.90 119.31 A A A N3 C4 C5 DC DC DC 3 3 3 N 1 10.36 1.20 119.70 130.06 A A A C3' O3' P DC DC DG 3 3 4 Y 1 -4.87 0.80 105.90 101.03 A A A O4' C1' C2' DG DG DG 4 4 4 N 1 2.18 0.30 108.30 110.48 A A A O4' C1' N9 DG DG DG 4 4 4 N 1 2.96 0.30 108.30 111.26 A A A O4' C1' N9 DA DA DA 5 5 5 N 1 7.90 1.20 119.70 127.60 A A A C3' O3' P DA DA AAB 5 5 6 Y 1 10.92 1.20 119.70 130.62 A A A C3' O3' P AAB AAB DA 6 6 7 Y 1 -8.62 0.80 105.90 97.28 A A A O4' C1' C2' DC DC DC 8 8 8 N 1 -5.00 0.80 105.90 100.90 A A A O4' C1' C2' DG DG DG 9 9 9 N 1 3.47 0.30 108.30 111.77 A A A O4' C1' N9 DG DG DG 9 9 9 N 1 16.26 1.60 120.90 137.16 A A A P O5' C5' DC DC DC 10 10 10 N 1 2.79 0.30 108.30 111.09 A A A O4' C1' N1 DC DC DC 10 10 10 N 1 -4.42 0.70 102.20 97.78 A A A C4' C3' C2' DC DC DC 11 11 11 N 1 3.82 0.30 108.30 112.12 A A A O4' C1' N1 DC DC DC 11 11 11 N 1 3.63 0.30 108.30 111.93 B B B O4' C1' N9 DG DG DG 12 12 12 N 1 2.76 0.30 108.30 111.06 B B B O4' C1' N9 DG DG DG 13 13 13 N 1 2.70 0.30 108.30 111.00 B B B O4' C1' N1 DC DC DC 19 19 19 N 1 12.23 1.20 119.70 131.93 B B B C3' O3' P DC DC DG 19 19 20 Y 1 2.67 0.30 108.30 110.97 B B B O4' C1' N9 DG DG DG 20 20 20 N 1 3.63 0.60 118.90 122.53 B B B N1 C2 O2 DC DC DC 21 21 21 N 1 8.17 1.20 119.70 127.87 B B B C3' O3' P DC DC DG 21 21 22 Y 1 -5.05 0.40 104.50 99.45 B B B O4' C4' C3' DG DG DG 22 22 22 N 1 6.65 1.10 109.80 116.45 B B B C5' C4' O4' DG DG DG 22 22 22 N 1 8.46 0.30 108.30 116.76 B B B O4' C1' N9 DG DG DG 22 22 22 N 1 A A C5' C4' DC DC 1 1 -0.085 0.011 1.509 1.424 N 1 A A C4' C3' DC DC 1 1 -0.090 0.010 1.521 1.431 N 1 A A C3' C2' DC DC 1 1 -0.131 0.008 1.516 1.385 N 1 A A C2' C1' DC DC 1 1 -0.121 0.010 1.518 1.397 N 1 A A O4' C4' DC DC 1 1 -0.158 0.010 1.446 1.288 N 1 A A C1' N1 DC DC 1 1 -0.085 0.014 1.468 1.383 N 1 A A C4 N4 DC DC 1 1 -0.091 0.009 1.335 1.244 N 1 A A N1 C6 DC DC 1 1 -0.037 0.006 1.367 1.330 N 1 A A C2 N3 DC DC 1 1 -0.085 0.008 1.353 1.268 N 1 A A C5 C6 DC DC 1 1 -0.082 0.008 1.339 1.257 N 1 A A P OP1 DG DG 2 2 -0.162 0.017 1.485 1.323 N 1 A A P OP2 DG DG 2 2 -0.177 0.017 1.485 1.308 N 1 A A P O5' DG DG 2 2 -0.108 0.010 1.593 1.485 N 1 A A C5' C4' DG DG 2 2 -0.089 0.011 1.509 1.420 N 1 A A C3' C2' DG DG 2 2 -0.061 0.008 1.516 1.455 N 1 A A C2' C1' DG DG 2 2 -0.063 0.010 1.518 1.455 N 1 A A O4' C4' DG DG 2 2 -0.065 0.010 1.446 1.381 N 1 A A C2 N3 DG DG 2 2 -0.054 0.008 1.323 1.269 N 1 A A C5 N7 DG DG 2 2 -0.038 0.006 1.388 1.350 N 1 A A N9 C4 DG DG 2 2 -0.070 0.008 1.375 1.305 N 1 A A P OP2 DC DC 3 3 -0.151 0.017 1.485 1.334 N 1 A A P O5' DC DC 3 3 -0.104 0.010 1.593 1.489 N 1 A A C5' C4' DC DC 3 3 -0.085 0.011 1.509 1.424 N 1 A A O3' C3' DC DC 3 3 -0.037 0.006 1.419 1.382 N 1 A A C2 O2 DC DC 3 3 -0.062 0.009 1.240 1.178 N 1 A A N1 C2 DC DC 3 3 -0.065 0.010 1.397 1.332 N 1 A A N1 C6 DC DC 3 3 -0.057 0.006 1.367 1.310 N 1 A A N3 C4 DC DC 3 3 -0.055 0.007 1.335 1.280 N 1 A A C4 C5 DC DC 3 3 -0.051 0.008 1.425 1.374 N 1 A A O3' P DC DG 8 9 -0.079 0.012 1.607 1.528 Y 1 A A P OP1 DG DG 9 9 -0.103 0.017 1.485 1.382 N 1 A A P OP2 DG DG 9 9 -0.119 0.017 1.485 1.366 N 1 A A C3' C2' DG DG 9 9 -0.090 0.008 1.516 1.426 N 1 A A C2' C1' DG DG 9 9 -0.091 0.010 1.518 1.427 N 1 A A O4' C1' DG DG 9 9 -0.077 0.012 1.418 1.341 N 1 A A O4' C4' DG DG 9 9 -0.077 0.010 1.446 1.369 N 1 A A N1 C2 DG DG 9 9 -0.058 0.008 1.373 1.315 N 1 A A C4 C5 DG DG 9 9 -0.069 0.007 1.379 1.310 N 1 A A N7 C8 DG DG 9 9 -0.048 0.006 1.305 1.257 N 1 A A C8 N9 DG DG 9 9 -0.043 0.007 1.374 1.331 N 1 A A C6 O6 DG DG 9 9 -0.061 0.009 1.237 1.176 N 1 A A P O5' DC DC 10 10 -0.073 0.010 1.593 1.520 N 1 A A O5' C5' DC DC 10 10 -0.238 0.025 1.418 1.180 N 1 A A C3' C2' DC DC 10 10 -0.073 0.008 1.516 1.443 N 1 A A C2' C1' DC DC 10 10 -0.084 0.010 1.518 1.434 N 1 A A O4' C4' DC DC 10 10 -0.081 0.010 1.446 1.365 N 1 A A N1 C2 DC DC 10 10 -0.068 0.010 1.397 1.329 N 1 A A C4 C5 DC DC 10 10 -0.058 0.008 1.425 1.367 N 1 A A O3' P DC DC 10 11 -0.076 0.012 1.607 1.531 Y 1 A A C3' C2' DC DC 11 11 -0.053 0.008 1.516 1.463 N 1 A A C2 O2 DC DC 11 11 -0.060 0.009 1.240 1.180 N 1 A A N1 C2 DC DC 11 11 -0.072 0.010 1.397 1.325 N 1 A A N1 C6 DC DC 11 11 -0.044 0.006 1.367 1.323 N 1 A A N3 C4 DC DC 11 11 -0.053 0.007 1.335 1.282 N 1 A A C4 C5 DC DC 11 11 -0.069 0.008 1.425 1.356 N 1 B B C5' C4' DG DG 12 12 -0.072 0.011 1.509 1.437 N 1 B B C4' C3' DG DG 12 12 -0.106 0.010 1.521 1.415 N 1 B B C3' C2' DG DG 12 12 -0.087 0.008 1.516 1.429 N 1 B B C2' C1' DG DG 12 12 -0.122 0.010 1.518 1.396 N 1 B B O4' C1' DG DG 12 12 -0.084 0.012 1.418 1.334 N 1 B B O4' C4' DG DG 12 12 -0.097 0.010 1.446 1.349 N 1 B B N1 C2 DG DG 12 12 -0.061 0.008 1.373 1.312 N 1 B B C2 N3 DG DG 12 12 -0.054 0.008 1.323 1.269 N 1 B B C4 C5 DG DG 12 12 -0.069 0.007 1.379 1.310 N 1 B B C5 C6 DG DG 12 12 -0.072 0.010 1.419 1.347 N 1 B B C6 N1 DG DG 12 12 -0.044 0.007 1.391 1.347 N 1 B B N7 C8 DG DG 12 12 -0.073 0.006 1.305 1.232 N 1 B B N9 C4 DG DG 12 12 -0.065 0.008 1.375 1.310 N 1 B B C6 O6 DG DG 12 12 -0.070 0.009 1.237 1.167 N 1 B B O3' P DG DG 12 13 -0.113 0.012 1.607 1.494 Y 1 B B P OP2 DG DG 13 13 -0.106 0.017 1.485 1.379 N 1 B B P O5' DG DG 13 13 -0.132 0.010 1.593 1.461 N 1 B B C5' C4' DG DG 13 13 -0.090 0.011 1.509 1.419 N 1 B B O3' C3' DG DG 13 13 -0.048 0.006 1.419 1.371 N 1 B B C4' C3' DC DC 21 21 -0.064 0.010 1.521 1.457 N 1 B B C3' C2' DC DC 21 21 -0.070 0.008 1.516 1.446 N 1 B B O4' C4' DC DC 21 21 -0.064 0.010 1.446 1.382 N 1 B B O3' C3' DC DC 21 21 -0.038 0.006 1.419 1.381 N 1 B B O3' P DC DG 21 22 -0.109 0.012 1.607 1.498 Y 1 B B P O5' DG DG 22 22 -0.061 0.010 1.593 1.532 N 1 B B C5' C4' DG DG 22 22 -0.110 0.011 1.509 1.399 N 1 B B C4' C3' DG DG 22 22 -0.187 0.010 1.521 1.334 N 1 B B C3' C2' DG DG 22 22 -0.126 0.008 1.516 1.390 N 1 B B C2' C1' DG DG 22 22 -0.195 0.010 1.518 1.323 N 1 B B O4' C1' DG DG 22 22 -0.075 0.012 1.418 1.343 N 1 B B O4' C4' DG DG 22 22 -0.101 0.010 1.446 1.345 N 1 B B O3' C3' DG DG 22 22 -0.163 0.006 1.419 1.256 N 1 B B N3 C4 DG DG 22 22 -0.064 0.007 1.350 1.286 N 1 B B C4 C5 DG DG 22 22 -0.054 0.007 1.379 1.325 N 1 B B C6 N1 DG DG 22 22 -0.082 0.007 1.391 1.309 N 1 B B C5 N7 DG DG 22 22 -0.061 0.006 1.388 1.327 N 1 B B C8 N9 DG DG 22 22 -0.070 0.007 1.374 1.304 N 1 B B N9 C4 DG DG 22 22 -0.066 0.008 1.375 1.309 N 1 B B C2 N2 DG DG 22 22 -0.086 0.010 1.341 1.255 N model building X-PLOR 3.1 refinement X-PLOR 3.1 phasing X-PLOR 3.1 APURINIC DNA WITH BOUND WATER AT THE DAMAGED SITE AND O2 OF CYTOSINE, BETA FORM, NMR, 1 STRUCTURE 1 N N 2 N N 3 N N covale 1.585 one A DA 5 A O3' DA 5 1_555 A AAB 6 A P AAB 6 1_555 covale 1.578 one A AAB 6 A O3' AAB 6 1_555 A DA 7 A P DA 7 1_555 hydrog WATSON-CRICK A DC 1 A N3 DC 1 1_555 B DG 22 B N1 DG 11 1_555 hydrog WATSON-CRICK A DC 1 A N4 DC 1 1_555 B DG 22 B O6 DG 11 1_555 hydrog WATSON-CRICK A DC 1 A O2 DC 1 1_555 B DG 22 B N2 DG 11 1_555 hydrog WATSON-CRICK A DG 2 A N1 DG 2 1_555 B DC 21 B N3 DC 10 1_555 hydrog WATSON-CRICK A DG 2 A N2 DG 2 1_555 B DC 21 B O2 DC 10 1_555 hydrog WATSON-CRICK A DG 2 A O6 DG 2 1_555 B DC 21 B N4 DC 10 1_555 hydrog WATSON-CRICK A DC 3 A N3 DC 3 1_555 B DG 20 B N1 DG 9 1_555 hydrog WATSON-CRICK A DC 3 A N4 DC 3 1_555 B DG 20 B O6 DG 9 1_555 hydrog WATSON-CRICK A DC 3 A O2 DC 3 1_555 B DG 20 B N2 DG 9 1_555 hydrog WATSON-CRICK A DG 4 A N1 DG 4 1_555 B DC 19 B N3 DC 8 1_555 hydrog WATSON-CRICK A DG 4 A N2 DG 4 1_555 B DC 19 B O2 DC 8 1_555 hydrog WATSON-CRICK A DG 4 A O6 DG 4 1_555 B DC 19 B N4 DC 8 1_555 hydrog WATSON-CRICK A DA 5 A N1 DA 5 1_555 B DT 18 B N3 DT 7 1_555 hydrog WATSON-CRICK A DA 5 A N6 DA 5 1_555 B DT 18 B O4 DT 7 1_555 hydrog WATSON-CRICK A DA 7 A N1 DA 7 1_555 B DT 16 B N3 DT 5 1_555 hydrog WATSON-CRICK A DA 7 A N6 DA 7 1_555 B DT 16 B O4 DT 5 1_555 hydrog WATSON-CRICK A DC 8 A N3 DC 8 1_555 B DG 15 B N1 DG 4 1_555 hydrog WATSON-CRICK A DC 8 A N4 DC 8 1_555 B DG 15 B O6 DG 4 1_555 hydrog WATSON-CRICK A DC 8 A O2 DC 8 1_555 B DG 15 B N2 DG 4 1_555 hydrog WATSON-CRICK A DG 9 A N1 DG 9 1_555 B DC 14 B N3 DC 3 1_555 hydrog WATSON-CRICK A DG 9 A N2 DG 9 1_555 B DC 14 B O2 DC 3 1_555 hydrog WATSON-CRICK A DG 9 A O6 DG 9 1_555 B DC 14 B N4 DC 3 1_555 hydrog WATSON-CRICK A DC 10 A N3 DC 10 1_555 B DG 13 B N1 DG 2 1_555 hydrog WATSON-CRICK A DC 10 A N4 DC 10 1_555 B DG 13 B O6 DG 2 1_555 hydrog WATSON-CRICK A DC 10 A O2 DC 10 1_555 B DG 13 B N2 DG 2 1_555 hydrog WATSON-CRICK A DC 11 A N3 DC 11 1_555 B DG 12 B N1 DG 1 1_555 hydrog WATSON-CRICK A DC 11 A N4 DC 11 1_555 B DG 12 B O6 DG 1 1_555 hydrog WATSON-CRICK A DC 11 A O2 DC 11 1_555 B DG 12 B N2 DG 1 1_555 DNA DAMAGED DNA, APURINIC DNA, WATER, DNA 1A9H PDB 1 1A9H 1A9H PDB 2 1A9H 1 11 1A9H 1 11 1A9H A 1 1 11 12 22 1A9H 12 22 1A9H B 2 1 11 1 P 1