1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 Beger, R.D. Bolton, P.H. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 1 90.00 90.00 90.00 1.000 1.000 1.000 C5 H11 O7 P 214.110 2'-DEOXY-RIBOFURANOSE-5'-MONOPHOSPHATE ABASIC DEOXYRIBOSE DNA linking C10 H14 N5 O6 P 331.222 y 2'-DEOXYADENOSINE-5'-MONOPHOSPHATE DNA linking C9 H14 N3 O7 P 307.197 y 2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE DNA linking C10 H14 N5 O7 P 347.221 y 2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE DNA linking C10 H15 N2 O8 P 322.208 y THYMIDINE-5'-MONOPHOSPHATE DNA linking H2 O 18.015 WATER non-polymer N 1 N P N 2 N O N 3 N O N 4 N O N 5 N O N 6 N C N 7 R C N 8 N O N 9 R C N 10 N O N 11 N C N 12 S C N 13 N O N 14 N H N 15 N H N 16 N H N 17 N H N 18 N H N 19 N H N 20 N H N 21 N H N 22 N H N 23 N H N 24 N H N 25 N O N 26 N P N 27 N O N 28 N O N 29 N O N 30 N C N 31 R C N 32 N O N 33 S C N 34 N O N 35 N C N 36 R C Y 37 N N Y 38 N C Y 39 N N Y 40 N C Y 41 N C N 42 N N Y 43 N N Y 44 N C Y 45 N N Y 46 N C N 47 N H N 48 N H N 49 N H N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N H N 59 N H N 60 N H N 61 N O N 62 N P N 63 N O N 64 N O N 65 N O N 66 N C N 67 R C N 68 N O N 69 S C N 70 N O N 71 N C N 72 R C N 73 N N N 74 N C N 75 N O N 76 N N N 77 N C N 78 N N N 79 N C N 80 N C N 81 N H N 82 N H N 83 N H N 84 N H N 85 N H N 86 N H N 87 N H N 88 N H N 89 N H N 90 N H N 91 N H N 92 N H N 93 N H N 94 N H N 95 N O N 96 N P N 97 N O N 98 N O N 99 N O N 100 N C N 101 R C N 102 N O N 103 S C N 104 N O N 105 N C N 106 R C Y 107 N N Y 108 N C Y 109 N N Y 110 N C N 111 N C N 112 N O N 113 N N N 114 N C N 115 N N N 116 N N Y 117 N C N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N H N 124 N H N 125 N H N 126 N H N 127 N H N 128 N H N 129 N H N 130 N H N 131 N H N 132 N O N 133 N P N 134 N O N 135 N O N 136 N O N 137 N C N 138 R C N 139 N O N 140 S C N 141 N O N 142 N C N 143 R C N 144 N N N 145 N C N 146 N O N 147 N N N 148 N C N 149 N O N 150 N C N 151 N C N 152 N C N 153 N H N 154 N H N 155 N H N 156 N H N 157 N H N 158 N H N 159 N H N 160 N H N 161 N H N 162 N H N 163 N H N 164 N H N 165 N H N 166 N H N 167 N H N 168 N O N 169 N H N 170 N H N 1 N sing N 2 N doub N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N sing N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N sing N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N doub N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N sing N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N sing N 46 N sing N 47 N sing Y 48 N sing Y 49 N sing Y 50 N doub N 51 N sing Y 52 N sing Y 53 N sing Y 54 N doub N 55 N sing Y 56 N doub N 57 N sing N 58 N sing Y 59 N sing Y 60 N doub N 61 N sing Y 62 N sing N 63 N sing N 64 N sing N 65 N doub N 66 N sing N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N sing N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N doub N 89 N sing N 90 N doub N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N doub N 96 N sing N 97 N sing N 98 N sing N 99 N sing N 100 N doub N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N sing N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N sing N 117 N sing N 118 N sing N 119 N sing N 120 N sing Y 121 N sing Y 122 N sing Y 123 N doub N 124 N sing Y 125 N sing N 126 N sing Y 127 N doub N 128 N doub N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N doub N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N sing N 139 N doub N 140 N sing N 141 N sing N 142 N sing N 143 N sing N 144 N sing N 145 N sing N 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N sing N 159 N sing N 160 N sing N 161 N sing N 162 N doub N 163 N sing N 164 N sing N 165 N sing N 166 N doub N 167 N sing N 168 N sing N 169 N doub N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing US J.Biol.Chem. JBCHA3 0071 0021-9258 273 15565 15573 10.1074/jbc.273.25.15565 9624147 Structures of apurinic and apyrimidinic sites in duplex DNAs. 1998 10.2210/pdb1a9i/pdb pdb_00001a9i 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 3211.077 DNA (5'-D(*CP*GP*CP*GP*AP*AABP*AP*CP*GP*CP*C)-3') 1 syn polymer 3390.209 DNA (5'-D(*GP*GP*CP*GP*TP*AP*TP*CP*GP*CP*G)-3') 1 syn polymer 18.015 water 1 nat water no yes (DC)(DG)(DC)(DG)(DA)(AAB)(DA)(DC)(DG)(DC)(DC) CGCGAXACGCC A polydeoxyribonucleotide no no (DG)(DG)(DC)(DG)(DT)(DA)(DT)(DC)(DG)(DC)(DG) GGCGTATCGCG B polydeoxyribonucleotide n n n n n n n n n n n n n n n n n n n n n n -14.047 1 19 A 1 B 22 -2.366 A_DC1:DG22_B 1 5.328 0.410 0.382 -0.325 -3.392 1 19 A 2 B 21 -1.651 A_DG2:DC21_B 2 -4.287 -0.572 0.233 -0.472 -5.381 1 19 A 3 B 20 -0.551 A_DC3:DG20_B 3 0.473 0.601 0.255 -0.395 -0.355 1 19 A 4 B 19 -2.189 A_DG4:DC19_B 4 1.003 -0.617 0.077 -0.365 2.047 1 20 A 5 B 18 -3.047 A_DA5:DT18_B 5 -1.858 0.083 0.188 -0.152 9.564 1 20 A 7 B 16 -7.470 A_DA7:DT16_B 6 -21.089 0.219 0.533 -0.213 3.094 1 19 A 8 B 15 -1.269 A_DC8:DG15_B 7 -0.209 0.614 0.137 -0.342 10.985 1 19 A 9 B 14 -0.769 A_DG9:DC14_B 8 1.914 -0.569 0.255 -0.323 17.078 1 19 A 10 B 13 0.993 A_DC10:DG13_B 9 -7.586 0.643 -0.264 -0.356 6.804 1 19 A 11 B 12 2.236 A_DC11:DG12_B 10 -5.440 0.555 0.043 -0.396 2.894 28.209 A A 1 2 -2.804 B B 22 21 2.863 -1.363 0.029 -0.996 AA_DC1DG2:DC21DG22_BB 1 3.004 -6.177 28.019 -1.764 0.559 3.257 48.098 A A 2 3 -3.295 B B 21 20 3.213 -2.683 0.463 -0.613 AA_DG2DC3:DG20DC21_BB 2 2.119 -2.602 47.983 -0.543 -0.404 3.518 32.307 A A 3 4 -15.896 B B 20 19 3.242 -8.724 -0.057 -1.577 AA_DC3DG4:DC19DG20_BB 3 3.464 -6.312 30.948 -1.200 0.752 3.129 36.438 A A 4 5 -0.981 B B 19 18 3.109 -0.614 0.191 -1.275 AA_DG4DA5:DT18DC19_BB 4 -0.084 0.135 36.433 -1.957 -0.317 5.457 80.426 A A 5 7 9.604 B B 18 16 5.543 12.357 -0.907 0.305 AA_DA5DA7:DT16DT18_BB 5 6.931 -5.387 79.378 -0.313 1.010 3.477 46.798 A A 7 8 -19.012 B B 16 15 3.727 -14.865 0.366 0.222 AA_DA7DC8:DG15DT16_BB 6 -1.235 1.580 44.484 1.680 -0.577 3.575 31.062 A A 8 9 -25.420 B B 15 14 3.306 -13.191 0.140 -1.403 AA_DC8DG9:DC14DG15_BB 7 -1.906 3.672 28.121 0.183 -0.666 3.059 45.639 A A 9 10 -0.165 B B 14 13 3.038 -0.128 0.350 -0.412 AA_DG9DC10:DG13DC14_BB 8 4.268 -5.509 45.450 -0.520 -0.103 3.807 31.950 A A 10 11 -14.791 B B 13 12 3.780 -8.037 1.135 -1.280 AA_DC10DC11:DG12DG13_BB 9 -4.059 7.471 30.687 -0.600 -2.933 chem_comp_atom chem_comp_bond database_2 pdbx_database_status struct_conn repository Initial release Version format compliance Version format compliance Structure summary Data collection Database references Derived calculations Other 1 0 1998-07-15 1 1 2008-03-24 1 2 2011-07-13 1 3 2014-07-09 1 4 2024-04-10 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_database_status.process_site _struct_conn.pdbx_leaving_atom_flag _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id Y BNL 1998-04-06 REL HOH water 100MS NOESY, 250MS NOESY 250MS QUIETNOESY 70MS BAND-SELECTIVE J TOCSY FOR PHOSPHOROUS "J SCALE" SET TO 2 AND 3 AVERAGE OF 5 STRUCTURES THAT THE NOESY BACKCALCULATION AGREES WITH EXPERIMENTAL NOESY 100 1 NOESY PECOSY TOCSY ROESY QUIET-NOESY 50 mM KCL 7.0 1 atm 300 K matrix relaxation TRIS BRUNGER refinement X-PLOR 3.1 structure solution VNMR 400 Varian UNITY 500 Varian INOVA HOH 23 3 HOH HOH 23 B C 1 n 1 DC 1 A G 2 n 2 DG 2 A C 3 n 3 DC 3 A G 4 n 4 DG 4 A A 5 n 5 DA 5 A AAB 6 n 6 AAB 6 A A 7 n 7 DA 7 A C 8 n 8 DC 8 A G 9 n 9 DG 9 A C 10 n 10 DC 10 A C 11 n 11 DC 11 A G 12 n 1 DG 12 B G 13 n 2 DG 13 B C 14 n 3 DC 14 B G 15 n 4 DG 15 B T 16 n 5 DT 16 B A 17 n 6 DA 17 B T 18 n 7 DT 18 B C 19 n 8 DC 19 B G 20 n 9 DG 20 B C 21 n 10 DC 21 B G 22 n 11 DG 22 B author_defined_assembly 2 dimeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 1 A A O3' P DC DG 1 2 1.35 1 -8.19 0.80 105.90 97.71 A A A O4' C1' C2' DC DC DC 1 1 1 N 1 4.52 0.30 108.30 112.82 A A A O4' C1' N1 DC DC DC 1 1 1 N 1 3.89 0.60 118.90 122.79 A A A N1 C2 O2 DC DC DC 1 1 1 N 1 -5.65 0.70 121.90 116.25 A A A N3 C2 O2 DC DC DC 1 1 1 N 1 7.63 1.20 119.70 127.33 A A A C3' O3' P DC DC DG 1 1 2 Y 1 4.35 0.30 108.30 112.65 A A A O4' C1' N9 DG DG DG 2 2 2 N 1 7.45 1.20 119.70 127.15 A A A C3' O3' P DC DC DG 3 3 4 Y 1 3.67 0.30 108.30 111.97 A A A O4' C1' N9 DA DA DA 5 5 5 N 1 7.37 1.20 119.70 127.07 A A A C3' O3' P AAB AAB DA 6 6 7 Y 1 7.48 1.20 119.70 127.18 A A A C3' O3' P DA DA DC 7 7 8 Y 1 7.74 1.20 119.70 127.44 A A A C3' O3' P DC DC DG 8 8 9 Y 1 2.37 0.30 108.30 110.67 A A A O4' C1' N9 DG DG DG 9 9 9 N 1 22.52 1.60 120.90 143.42 A A A P O5' C5' DC DC DC 11 11 11 N 1 5.65 0.30 108.30 113.95 A A A O4' C1' N1 DC DC DC 11 11 11 N 1 -2.66 0.40 121.90 119.24 A A A N3 C4 C5 DC DC DC 11 11 11 N 1 6.97 0.60 106.00 112.97 B B B O4' C4' C3' DG DG DG 12 12 12 N 1 3.71 0.30 108.30 112.01 B B B O4' C1' N9 DG DG DG 12 12 12 N 1 3.81 0.30 108.30 112.11 B B B O4' C1' N9 DG DG DG 13 13 13 N 1 7.48 1.20 119.70 127.18 B B B C3' O3' P DG DG DT 15 15 16 Y 1 3.69 0.30 108.30 111.99 B B B O4' C1' N1 DT DT DT 16 16 16 N 1 -4.40 0.70 102.20 97.80 B B B C4' C3' C2' DA DA DA 17 17 17 N 1 9.65 1.20 119.70 129.35 B B B C3' O3' P DA DA DT 17 17 18 Y 1 -6.88 0.80 105.90 99.02 B B B O4' C1' C2' DT DT DT 18 18 18 N 1 2.36 0.30 108.30 110.66 B B B O4' C1' N1 DT DT DT 18 18 18 N 1 3.80 0.60 118.90 122.70 B B B N1 C2 O2 DC DC DC 19 19 19 N 1 9.18 1.20 119.70 128.88 B B B C3' O3' P DG DG DC 20 20 21 Y 1 7.81 1.20 119.70 127.51 B B B C3' O3' P DC DC DG 21 21 22 Y 1 -4.65 0.70 102.20 97.55 B B B C4' C3' C2' DG DG DG 22 22 22 N 1 -6.08 0.80 105.90 99.82 B B B O4' C1' C2' DG DG DG 22 22 22 N 1 4.01 0.30 108.30 112.31 B B B O4' C1' N9 DG DG DG 22 22 22 N 1 -2.50 0.40 110.80 108.30 B B B C4 C5 N7 DG DG DG 22 22 22 N 1 -4.04 0.60 119.90 115.86 B B B N1 C6 O6 DG DG DG 22 22 22 N 1 A A C4' C3' DC DC 1 1 -0.153 0.010 1.521 1.368 N 1 A A C3' C2' DC DC 1 1 -0.101 0.008 1.516 1.415 N 1 A A C2' C1' DC DC 1 1 -0.094 0.010 1.518 1.424 N 1 A A O4' C1' DC DC 1 1 -0.110 0.012 1.418 1.308 N 1 A A O4' C4' DC DC 1 1 -0.067 0.010 1.446 1.379 N 1 A A O3' C3' DC DC 1 1 -0.082 0.006 1.419 1.337 N 1 A A C2 O2 DC DC 1 1 -0.103 0.009 1.240 1.137 N 1 A A C4 N4 DC DC 1 1 -0.085 0.009 1.335 1.250 N 1 A A N1 C6 DC DC 1 1 -0.099 0.006 1.367 1.268 N 1 A A C2 N3 DC DC 1 1 -0.079 0.008 1.353 1.274 N 1 A A N3 C4 DC DC 1 1 -0.101 0.007 1.335 1.234 N 1 A A C5 C6 DC DC 1 1 -0.073 0.008 1.339 1.266 N 1 A A O3' P DC DG 1 2 -0.261 0.012 1.607 1.346 Y 1 A A P OP1 DG DG 2 2 -0.194 0.017 1.485 1.291 N 1 A A P OP2 DG DG 2 2 -0.178 0.017 1.485 1.307 N 1 A A P O5' DG DG 2 2 -0.139 0.010 1.593 1.454 N 1 A A C4' C3' DG DG 2 2 -0.061 0.010 1.521 1.460 N 1 A A C2' C1' DG DG 2 2 -0.071 0.010 1.518 1.447 N 1 A A O3' C3' DG DG 2 2 -0.038 0.006 1.419 1.381 N 1 A A N9 C4 DG DG 2 2 -0.050 0.008 1.375 1.325 N 1 A A O3' C3' DG DG 4 4 -0.037 0.006 1.419 1.382 N 1 A A P OP1 DA DA 5 5 -0.112 0.017 1.485 1.373 N 1 A A P OP2 DA DA 5 5 -0.110 0.017 1.485 1.375 N 1 A A P OP1 DA DA 7 7 -0.104 0.017 1.485 1.381 N 1 A A O3' P DA DC 7 8 -0.127 0.012 1.607 1.480 Y 1 A A P OP1 DC DC 8 8 -0.107 0.017 1.485 1.378 N 1 A A P O5' DC DC 8 8 -0.119 0.010 1.593 1.474 N 1 A A P OP1 DC DC 11 11 -0.284 0.017 1.485 1.201 N 1 A A P OP2 DC DC 11 11 -0.349 0.017 1.485 1.136 N 1 A A P O5' DC DC 11 11 -0.359 0.010 1.593 1.234 N 1 A A C2' C1' DC DC 11 11 -0.073 0.010 1.518 1.445 N 1 A A O3' C3' DC DC 11 11 -0.045 0.006 1.419 1.374 N 1 A A C2 O2 DC DC 11 11 -0.065 0.009 1.240 1.175 N 1 A A N1 C2 DC DC 11 11 -0.073 0.010 1.397 1.324 N 1 A A N1 C6 DC DC 11 11 -0.058 0.006 1.367 1.309 N 1 A A N3 C4 DC DC 11 11 -0.056 0.007 1.335 1.279 N 1 A A C4 C5 DC DC 11 11 -0.053 0.008 1.425 1.372 N 1 B B C5' C4' DG DG 12 12 -0.184 0.011 1.509 1.325 N 1 B B C4' C3' DG DG 12 12 -0.077 0.010 1.521 1.444 N 1 B B O4' C4' DG DG 12 12 -0.069 0.010 1.446 1.377 N 1 B B O3' P DG DT 15 16 -0.124 0.012 1.607 1.483 Y 1 B B P OP1 DT DT 16 16 -0.146 0.017 1.485 1.339 N 1 B B P O5' DT DT 16 16 -0.077 0.010 1.593 1.516 N 1 B B C5 C7 DT DT 16 16 0.038 0.006 1.496 1.534 N 1 B B O3' P DT DC 18 19 -0.084 0.012 1.607 1.523 Y 1 B B C3' C2' DC DC 21 21 -0.071 0.008 1.516 1.445 N 1 B B P OP1 DG DG 22 22 -0.126 0.017 1.485 1.359 N 1 B B P OP2 DG DG 22 22 -0.180 0.017 1.485 1.305 N 1 B B P O5' DG DG 22 22 -0.203 0.010 1.593 1.390 N 1 B B C5' C4' DG DG 22 22 -0.121 0.011 1.509 1.388 N 1 B B C4' C3' DG DG 22 22 -0.143 0.010 1.521 1.378 N 1 B B C3' C2' DG DG 22 22 -0.077 0.008 1.516 1.439 N 1 B B C2' C1' DG DG 22 22 -0.129 0.010 1.518 1.389 N 1 B B O4' C1' DG DG 22 22 -0.078 0.012 1.418 1.340 N 1 B B O3' C3' DG DG 22 22 -0.133 0.006 1.419 1.286 N 1 B B N1 C2 DG DG 22 22 -0.077 0.008 1.373 1.296 N 1 B B N3 C4 DG DG 22 22 -0.051 0.007 1.350 1.299 N 1 B B C4 C5 DG DG 22 22 -0.087 0.007 1.379 1.292 N 1 B B C6 N1 DG DG 22 22 -0.071 0.007 1.391 1.320 N 1 B B N7 C8 DG DG 22 22 -0.043 0.006 1.305 1.262 N 1 B B C8 N9 DG DG 22 22 -0.081 0.007 1.374 1.293 N 1 B B C2 N2 DG DG 22 22 -0.064 0.010 1.341 1.277 N 1 B B C6 O6 DG DG 22 22 -0.073 0.009 1.237 1.164 N model building X-PLOR 3.1 refinement X-PLOR 3.1 phasing X-PLOR 3.1 APYRIMIDINIC DNA WITH BOUND WATER AT THE DAMAGED SITE, ALPHA FORM, NMR, 1 STRUCTURE 1 N N 2 N N 3 N N covale 1.540 one A DA 5 A O3' DA 5 1_555 A AAB 6 A P AAB 6 1_555 covale 1.566 one A AAB 6 A O3' AAB 6 1_555 A DA 7 A P DA 7 1_555 hydrog WATSON-CRICK A DC 1 A N3 DC 1 1_555 B DG 22 B N1 DG 11 1_555 hydrog WATSON-CRICK A DC 1 A N4 DC 1 1_555 B DG 22 B O6 DG 11 1_555 hydrog WATSON-CRICK A DC 1 A O2 DC 1 1_555 B DG 22 B N2 DG 11 1_555 hydrog WATSON-CRICK A DG 2 A N1 DG 2 1_555 B DC 21 B N3 DC 10 1_555 hydrog WATSON-CRICK A DG 2 A N2 DG 2 1_555 B DC 21 B O2 DC 10 1_555 hydrog WATSON-CRICK A DG 2 A O6 DG 2 1_555 B DC 21 B N4 DC 10 1_555 hydrog WATSON-CRICK A DC 3 A N3 DC 3 1_555 B DG 20 B N1 DG 9 1_555 hydrog WATSON-CRICK A DC 3 A N4 DC 3 1_555 B DG 20 B O6 DG 9 1_555 hydrog WATSON-CRICK A DC 3 A O2 DC 3 1_555 B DG 20 B N2 DG 9 1_555 hydrog WATSON-CRICK A DG 4 A N1 DG 4 1_555 B DC 19 B N3 DC 8 1_555 hydrog WATSON-CRICK A DG 4 A N2 DG 4 1_555 B DC 19 B O2 DC 8 1_555 hydrog WATSON-CRICK A DG 4 A O6 DG 4 1_555 B DC 19 B N4 DC 8 1_555 hydrog WATSON-CRICK A DA 5 A N1 DA 5 1_555 B DT 18 B N3 DT 7 1_555 hydrog WATSON-CRICK A DA 5 A N6 DA 5 1_555 B DT 18 B O4 DT 7 1_555 hydrog WATSON-CRICK A DA 7 A N1 DA 7 1_555 B DT 16 B N3 DT 5 1_555 hydrog WATSON-CRICK A DA 7 A N6 DA 7 1_555 B DT 16 B O4 DT 5 1_555 hydrog WATSON-CRICK A DC 8 A N3 DC 8 1_555 B DG 15 B N1 DG 4 1_555 hydrog WATSON-CRICK A DC 8 A N4 DC 8 1_555 B DG 15 B O6 DG 4 1_555 hydrog WATSON-CRICK A DC 8 A O2 DC 8 1_555 B DG 15 B N2 DG 4 1_555 hydrog WATSON-CRICK A DG 9 A N1 DG 9 1_555 B DC 14 B N3 DC 3 1_555 hydrog WATSON-CRICK A DG 9 A N2 DG 9 1_555 B DC 14 B O2 DC 3 1_555 hydrog WATSON-CRICK A DG 9 A O6 DG 9 1_555 B DC 14 B N4 DC 3 1_555 hydrog WATSON-CRICK A DC 10 A N3 DC 10 1_555 B DG 13 B N1 DG 2 1_555 hydrog WATSON-CRICK A DC 10 A N4 DC 10 1_555 B DG 13 B O6 DG 2 1_555 hydrog WATSON-CRICK A DC 10 A O2 DC 10 1_555 B DG 13 B N2 DG 2 1_555 hydrog WATSON-CRICK A DC 11 A N3 DC 11 1_555 B DG 12 B N1 DG 1 1_555 hydrog WATSON-CRICK A DC 11 A N4 DC 11 1_555 B DG 12 B O6 DG 1 1_555 hydrog WATSON-CRICK A DC 11 A O2 DC 11 1_555 B DG 12 B N2 DG 1 1_555 DNA DAMAGED DNA, APYRIMIDINIC DNA, WATER, DNA 1A9I PDB 1 1A9I 1A9I PDB 2 1A9I 1 11 1A9I 1 11 1A9I A 1 1 11 12 22 1A9I 12 22 1A9I B 2 1 11 1 P 1