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1
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2
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-3.010
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-3.750
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2
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3
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3
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3
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3
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3
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-4.762
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3
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-4.722
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3
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-3.494
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3
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-2.478
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-3.419
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3
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-4.356
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3
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3
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3
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3
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6.505
-6.661
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3
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-5.347
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1
3
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6.796
-3.793
8.306
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3
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0.572
-3.430
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3
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0.314
-5.139
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3
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1
3
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2.219
-6.663
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3
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4.609
-6.812
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3
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1
3
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9.784
-4.277
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4
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1
4
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1
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-4.106
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4
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4
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9.183
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4
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4
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9.158
-2.863
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4
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4
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4
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7.193
-0.818
9.977
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4
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4
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4
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4
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6.387
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4
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4
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4
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1
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4.832
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4
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1
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4
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4
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2.941
-1.068
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4
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1
4
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-0.770
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4
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1
4
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0.610
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4
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1
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O
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1.345
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10.664
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1
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2.324
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4
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1
4
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1.945
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10.209
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4
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1
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3.617
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10.545
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4
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4
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3.855
-0.077
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4
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4
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10.355
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4
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1
4
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8.959
-2.254
11.548
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4
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4
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9.057
-0.169
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4
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0.061
12.075
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4
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12.563
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4
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6.980
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12.563
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4
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1
4
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6.231
0.992
10.367
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4
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4
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5.600
-2.715
11.391
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4
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1
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0.371
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10.599
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4
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4
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2.923
10.099
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4
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2.642
3.400
10.119
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9.201
2.846
11.714
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5
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1
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9.920
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9.687
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12.949
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3.444
11.923
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4.198
13.001
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5.994
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5.445
13.870
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6.646
13.414
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4.437
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14.406
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3.910
3.769
13.206
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2.462
13.524
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3.910
1.273
13.836
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3.081
0.297
14.053
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0.889
13.875
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0.547
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0.292
-0.871
14.259
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2.518
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3.088
13.308
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13.553
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5.042
13.149
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3.613
13.882
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11.904
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14.569
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3.719
14.985
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14.986
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4.388
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1.151
13.896
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-1.208
14.345
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-1.505
14.398
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3.217
13.223
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4.102
7.631
14.293
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4.324
8.949
13.740
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6
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15.662
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14.062
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13.579
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14.363
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14.480
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6.650
15.691
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5.393
15.803
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16.213
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15.623
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16.065
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12.750
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13.437
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13.972
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16.029
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15.301
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17.169
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15.641
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17.326
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-3.242
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7
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-5.398
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20.416
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7
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-3.114
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19.634
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19.746
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-0.615
6.713
19.915
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0.166
5.687
19.911
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-0.709
4.638
19.730
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-0.526
3.275
19.634
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1
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0.673
2.723
19.698
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-1.620
2.524
19.459
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-2.812
3.103
19.386
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4.363
19.460
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5.082
19.633
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9.620
16.610
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10.902
17.684
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9.065
17.780
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10.411
19.920
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20.271
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8.414
21.457
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6.711
19.831
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7.713
20.058
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0.800
1.748
19.543
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1.468
3.287
19.905
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2.511
19.246
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-6.105
9.174
21.328
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8
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10.077
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9.377
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7.858
21.547
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8
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7.112
20.638
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8
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5.659
21.041
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-6.349
5.046
21.129
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-8.318
5.437
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4.295
22.271
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5.290
23.282
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4.533
22.439
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8
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-4.701
4.723
22.723
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-3.904
3.597
22.736
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-4.351
2.477
22.561
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3.737
22.950
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-2.060
4.934
23.146
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5.004
23.346
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-2.852
6.112
23.143
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8
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-4.164
5.961
22.930
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7.132
19.671
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8
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20.570
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5.141
20.293
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6.287
22.612
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6.308
23.484
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8
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4.794
24.217
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3.490
22.461
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4.145
23.321
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-0.311
5.881
23.513
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1
8
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-2.404
7.086
23.300
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1
8
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-4.782
6.848
22.934
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8
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3.491
23.458
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-11.039
2.949
22.974
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9
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4.338
24.637
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9
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2.285
23.711
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1.195
22.809
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0.053
23.350
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0.409
23.570
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9
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24.662
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9
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9
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1
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1
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O
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1
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9
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9
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9
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9
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9
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1
9
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1
10
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1
10
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10
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10
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10
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10
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10
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10
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10
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10
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10
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10
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1
10
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-4.277
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28.268
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10
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1
10
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-3.026
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10
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1
10
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10
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1
10
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O
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-2.885
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10
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1
10
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-3.929
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10
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1
10
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C
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-3.718
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10
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1
10
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1
N
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-5.234
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10
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1
10
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-5.361
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10
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1
10
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-6.127
-3.736
24.538
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10
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25.139
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25.420
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10
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27.262
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10
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10
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-5.497
-4.721
29.350
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10
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-4.179
28.267
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10
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10
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1
10
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10
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1
10
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10
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1
10
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10
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1
10
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-4.801
-7.699
28.719
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11
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1
11
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-8.630
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11
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11
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O
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-5.890
-8.018
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11
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11
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11
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11
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11
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-2.475
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11
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11
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11
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11
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11
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11
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11
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11
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11
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11
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11
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1
11
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-2.839
-2.944
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11
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1
11
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-2.116
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11
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1
11
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11
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1
11
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O
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11
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11
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11
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1
11
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C
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0.507
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11
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1
11
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-1.657
31.995
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11
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1
11
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-4.135
-2.788
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11
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11
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-3.335
-8.126
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11
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11
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-6.715
31.737
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11
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-6.639
29.591
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11
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32.097
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30.447
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11
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-5.312
32.884
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11
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-4.770
32.950
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11
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11
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30.854
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11
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11
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11
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1
11
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11
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1
11
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11
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1
11
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31.247
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11
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11
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H
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5.240
38.239
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12
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1
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O
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4.642
4.919
38.218
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12
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1
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4.453
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37.290
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12
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1
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C
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3.122
3.652
37.204
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12
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2
1
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O
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5.011
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36.025
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12
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2
1
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C
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6.063
3.570
35.691
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12
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2
1
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O
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3.776
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35.174
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12
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2
1
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C
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2.924
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35.853
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12
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2
1
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C
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1.523
3.433
35.479
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12
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2
1
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N
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0.609
4.401
35.669
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12
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C8
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2
1
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1
C
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-0.565
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35.201
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N7
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12
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B
N7
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2
1
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1
N
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-0.408
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34.663
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12
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B
C5
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2
1
1.00
1
C
0.00
-1.326
2.057
34.006
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12
ATOM
B
C6
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2
1
1.00
1
C
0.00
-2.503
2.220
33.748
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12
ATOM
B
O6
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2
1
1.00
1
O
0.00
-0.742
0.900
33.631
B
N1
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12
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B
N1
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2
1
1.00
1
N
0.00
0.556
0.569
33.853
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C2
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12
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B
C2
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2
1
1.00
1
C
0.00
0.983
-0.568
33.430
B
N2
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12
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B
N2
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2
1
1.00
1
N
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1.417
1.329
34.461
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12
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2
1
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1
N
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0.867
2.468
34.836
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12
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2
1
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C
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4.149
5.677
37.996
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12
ATOM
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2
1
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4.244
4.566
39.093
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12
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2
1
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4.956
3.226
37.532
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12
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2
1
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5.376
5.358
36.079
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12
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2
1
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H
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3.279
5.309
35.243
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12
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2
1
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3.960
4.114
34.143
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12
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2
1
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3.302
2.399
35.626
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12
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B
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2
1
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H
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0.852
5.313
36.164
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12
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H8
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2
1
1.00
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H
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-1.359
0.279
33.164
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12
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B
H1
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2
1
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1
H
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0.356
-1.222
33.029
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H21
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12
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B
H21
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2
1
1.00
1
H
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1.957
-0.751
33.523
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H22
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12
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H22
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2
1
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1
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6.270
5.205
37.378
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12
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B
HO5'
DG
2
1
1.00
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6.775
3.506
34.293
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13
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P
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2
2
1.00
1
P
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8.151
3.305
34.512
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13
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B
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2
2
1.00
1
O
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6.360
4.601
33.511
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13
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2
2
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6.190
2.229
33.665
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13
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2
2
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6.432
0.963
34.212
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13
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2
2
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5.938
-0.146
33.340
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13
ATOM
B
C4'
DG
2
2
1.00
1
C
0.00
4.524
-0.046
33.138
B
O4'
DG
13
ATOM
B
O4'
DG
2
2
1.00
1
O
0.00
6.611
-0.160
31.976
B
C3'
DG
13
ATOM
B
C3'
DG
2
2
1.00
1
C
0.00
6.747
-1.481
31.471
B
O3'
DG
13
ATOM
B
O3'
DG
2
2
1.00
1
O
0.00
5.592
0.613
31.219
B
C2'
DG
13
ATOM
B
C2'
DG
2
2
1.00
1
C
0.00
4.309
0.040
31.740
B
C1'
DG
13
ATOM
B
C1'
DG
2
2
1.00
1
C
0.00
3.125
0.834
31.413
B
N9
DG
13
ATOM
B
N9
DG
2
2
1.00
1
N
0.00
2.857
2.139
31.659
B
C8
DG
13
ATOM
B
C8
DG
2
2
1.00
1
C
0.00
1.682
2.527
31.249
B
N7
DG
13
ATOM
B
N7
DG
2
2
1.00
1
N
0.00
1.142
1.385
30.690
B
C5
DG
13
ATOM
B
C5
DG
2
2
1.00
1
C
0.00
-0.110
1.165
30.076
B
C6
DG
13
ATOM
B
C6
DG
2
2
1.00
1
C
0.00
-1.040
1.932
29.885
B
O6
DG
13
ATOM
B
O6
DG
2
2
1.00
1
O
0.00
-0.239
-0.127
29.655
B
N1
DG
13
ATOM
B
N1
DG
2
2
1.00
1
N
0.00
0.714
-1.099
29.799
B
C2
DG
13
ATOM
B
C2
DG
2
2
1.00
1
C
0.00
0.458
-2.287
29.324
B
N2
DG
13
ATOM
B
N2
DG
2
2
1.00
1
N
0.00
1.883
-0.906
30.372
B
N3
DG
13
ATOM
B
N3
DG
2
2
1.00
1
N
0.00
2.026
0.355
30.791
B
C4
DG
13
ATOM
B
C4
DG
2
2
1.00
1
C
0.00
5.924
0.902
35.157
B
H5'
DG
13
ATOM
B
H5'
DG
2
2
1.00
1
H
0.00
7.484
0.834
34.358
B
H5''
DG
13
ATOM
B
H5''
DG
2
2
1.00
1
H
0.00
6.137
-1.077
33.813
B
H4'
DG
13
ATOM
B
H4'
DG
2
2
1.00
1
H
0.00
7.587
0.300
32.004
B
H3'
DG
13
ATOM
B
H3'
DG
2
2
1.00
1
H
0.00
5.670
1.648
31.503
B
H2'
DG
13
ATOM
B
H2'
DG
2
2
1.00
1
H
0.00
5.679
0.503
30.153
B
H2''
DG
13
ATOM
B
H2''
DG
2
2
1.00
1
H
0.00
4.196
-0.969
31.368
B
H1'
DG
13
ATOM
B
H1'
DG
2
2
1.00
1
H
0.00
3.582
2.780
32.146
B
H8
DG
13
ATOM
B
H8
DG
2
2
1.00
1
H
0.00
-1.124
-0.319
29.222
B
H1
DG
13
ATOM
B
H1
DG
2
2
1.00
1
H
0.00
-0.457
-2.515
28.981
B
H21
DG
13
ATOM
B
H21
DG
2
2
1.00
1
H
0.00
1.200
-2.947
29.315
B
H22
DG
13
ATOM
B
H22
DG
2
2
1.00
1
H
0.00
7.413
-1.846
30.062
B
P
DC
14
ATOM
B
P
DC
2
3
1.00
1
P
0.00
8.391
-2.838
30.292
B
OP1
DC
14
ATOM
B
OP1
DC
2
3
1.00
1
O
0.00
7.794
-0.652
29.384
B
OP2
DC
14
ATOM
B
OP2
DC
2
3
1.00
1
O
0.00
6.259
-2.494
29.236
B
O5'
DC
14
ATOM
B
O5'
DC
2
3
1.00
1
O
0.00
5.750
-3.770
29.497
B
C5'
DC
14
ATOM
B
C5'
DC
2
3
1.00
1
C
0.00
4.788
-4.219
28.466
B
C4'
DC
14
ATOM
B
C4'
DC
2
3
1.00
1
C
0.00
3.672
-3.349
28.405
B
O4'
DC
14
ATOM
B
O4'
DC
2
3
1.00
1
O
0.00
5.378
-4.307
27.069
B
C3'
DC
14
ATOM
B
C3'
DC
2
3
1.00
1
C
0.00
4.861
-5.444
26.390
B
O3'
DC
14
ATOM
B
O3'
DC
2
3
1.00
1
O
0.00
4.938
-2.978
26.519
B
C2'
DC
14
ATOM
B
C2'
DC
2
3
1.00
1
C
0.00
3.562
-2.791
27.110
B
C1'
DC
14
ATOM
B
C1'
DC
2
3
1.00
1
C
0.00
3.091
-1.395
27.225
B
N1
DC
14
ATOM
B
N1
DC
2
3
1.00
1
N
0.00
1.836
-1.082
26.740
B
C2
DC
14
ATOM
B
C2
DC
2
3
1.00
1
C
0.00
1.128
-1.911
26.212
B
O2
DC
14
ATOM
B
O2
DC
2
3
1.00
1
O
0.00
1.379
0.179
26.861
B
N3
DC
14
ATOM
B
N3
DC
2
3
1.00
1
N
0.00
2.119
1.109
27.435
B
C4
DC
14
ATOM
B
C4
DC
2
3
1.00
1
C
0.00
1.615
2.328
27.529
B
N4
DC
14
ATOM
B
N4
DC
2
3
1.00
1
N
0.00
3.414
0.814
27.942
B
C5
DC
14
ATOM
B
C5
DC
2
3
1.00
1
C
0.00
3.856
-0.446
27.814
B
C6
DC
14
ATOM
B
C6
DC
2
3
1.00
1
C
0.00
5.235
-3.763
30.444
B
H5'
DC
14
ATOM
B
H5'
DC
2
3
1.00
1
H
0.00
6.552
-4.463
29.530
B
H5''
DC
14
ATOM
B
H5''
DC
2
3
1.00
1
H
0.00
4.424
-5.180
28.735
B
H4'
DC
14
ATOM
B
H4'
DC
2
3
1.00
1
H
0.00
6.455
-4.410
27.109
B
H3'
DC
14
ATOM
B
H3'
DC
2
3
1.00
1
H
0.00
5.640
-2.258
26.910
B
H2'
DC
14
ATOM
B
H2'
DC
2
3
1.00
1
H
0.00
4.928
-2.920
25.447
B
H2''
DC
14
ATOM
B
H2''
DC
2
3
1.00
1
H
0.00
2.869
-3.385
26.550
B
H1'
DC
14
ATOM
B
H1'
DC
2
3
1.00
1
H
0.00
0.678
2.484
27.194
B
H41
DC
14
ATOM
B
H41
DC
2
3
1.00
1
H
0.00
2.144
3.077
27.922
B
H42
DC
14
ATOM
B
H42
DC
2
3
1.00
1
H
0.00
4.010
1.576
28.419
B
H5
DC
14
ATOM
B
H5
DC
2
3
1.00
1
H
0.00
4.844
-0.696
28.188
B
H6
DC
14
ATOM
B
H6
DC
2
3
1.00
1
H
0.00
4.891
-5.670
24.802
B
P
DG
15
ATOM
B
P
DG
2
4
1.00
1
P
0.00
4.974
-7.101
24.553
B
OP1
DG
15
ATOM
B
OP1
DG
2
4
1.00
1
O
0.00
5.884
-4.777
24.211
B
OP2
DG
15
ATOM
B
OP2
DG
2
4
1.00
1
O
0.00
3.441
-5.177
24.358
B
O5'
DG
15
ATOM
B
O5'
DG
2
4
1.00
1
O
0.00
2.267
-5.887
24.756
B
C5'
DG
15
ATOM
B
C5'
DG
2
4
1.00
1
C
0.00
1.047
-5.483
23.969
B
C4'
DG
15
ATOM
B
C4'
DG
2
4
1.00
1
C
0.00
0.731
-4.108
24.155
B
O4'
DG
15
ATOM
B
O4'
DG
2
4
1.00
1
O
0.00
1.235
-5.695
22.479
B
C3'
DG
15
ATOM
B
C3'
DG
2
4
1.00
1
C
0.00
0.050
-6.242
21.917
B
O3'
DG
15
ATOM
B
O3'
DG
2
4
1.00
1
O
0.00
1.495
-4.283
22.052
B
C2'
DG
15
ATOM
B
C2'
DG
2
4
1.00
1
C
0.00
0.561
-3.493
22.905
B
C1'
DG
15
ATOM
B
C1'
DG
2
4
1.00
1
C
0.00
0.870
-2.058
23.014
B
N9
DG
15
ATOM
B
N9
DG
2
4
1.00
1
N
0.00
2.062
-1.441
23.270
B
C8
DG
15
ATOM
B
C8
DG
2
4
1.00
1
C
0.00
1.982
-0.143
23.327
B
N7
DG
15
ATOM
B
N7
DG
2
4
1.00
1
N
0.00
0.642
0.116
23.091
B
C5
DG
15
ATOM
B
C5
DG
2
4
1.00
1
C
0.00
-0.056
1.344
23.030
B
C6
DG
15
ATOM
B
C6
DG
2
4
1.00
1
C
0.00
0.356
2.484
23.176
B
O6
DG
15
ATOM
B
O6
DG
2
4
1.00
1
O
0.00
-1.387
1.167
22.771
B
N1
DG
15
ATOM
B
N1
DG
2
4
1.00
1
N
0.00
-1.990
-0.047
22.588
B
C2
DG
15
ATOM
B
C2
DG
2
4
1.00
1
C
0.00
-3.278
-0.060
22.338
B
N2
DG
15
ATOM
B
N2
DG
2
4
1.00
1
N
0.00
-1.349
-1.207
22.642
B
N3
DG
15
ATOM
B
N3
DG
2
4
1.00
1
N
0.00
-0.039
-1.048
22.897
B
C4
DG
15
ATOM
B
C4
DG
2
4
1.00
1
C
0.00
2.075
-5.700
25.793
B
H5'
DG
15
ATOM
B
H5'
DG
2
4
1.00
1
H
0.00
2.412
-6.938
24.616
B
H5''
DG
15
ATOM
B
H5''
DG
2
4
1.00
1
H
0.00
0.199
-6.084
24.286
B
H4'
DG
15
ATOM
B
H4'
DG
2
4
1.00
1
H
0.00
2.063
-6.339
22.276
B
H3'
DG
15
ATOM
B
H3'
DG
2
4
1.00
1
H
0.00
2.515
-4.035
22.283
B
H2'
DG
15
ATOM
B
H2'
DG
2
4
1.00
1
H
0.00
1.310
-4.126
21.018
B
H2''
DG
15
ATOM
B
H2''
DG
2
4
1.00
1
H
0.00
-0.448
-3.644
22.561
B
H1'
DG
15
ATOM
B
H1'
DG
2
4
1.00
1
H
0.00
2.997
-1.975
23.413
B
H8
DG
15
ATOM
B
H8
DG
2
4
1.00
1
H
0.00
-1.911
2.029
22.729
B
H1
DG
15
ATOM
B
H1
DG
2
4
1.00
1
H
0.00
-3.829
0.780
22.406
B
H21
DG
15
ATOM
B
H21
DG
2
4
1.00
1
H
0.00
-3.688
-0.934
22.078
B
H22
DG
15
ATOM
B
H22
DG
2
4
1.00
1
H
0.00
-0.162
-6.668
20.512
B
P
DT
16
ATOM
B
P
DT
2
5
1.00
1
P
0.00
-0.172
-8.007
20.485
B
OP1
DT
16
ATOM
B
OP1
DT
2
5
1.00
1
O
0.00
0.737
-5.943
19.663
B
OP2
DT
16
ATOM
B
OP2
DT
2
5
1.00
1
O
0.00
-1.594
-6.232
20.274
B
O5'
DT
16
ATOM
B
O5'
DT
2
5
1.00
1
O
0.00
-2.645
-6.399
21.216
B
C5'
DT
16
ATOM
B
C5'
DT
2
5
1.00
1
C
0.00
-3.696
-5.323
21.080
B
C4'
DT
16
ATOM
B
C4'
DT
2
5
1.00
1
C
0.00
-3.071
-4.032
21.180
B
O4'
DT
16
ATOM
B
O4'
DT
2
5
1.00
1
O
0.00
-4.462
-5.362
19.756
B
C3'
DT
16
ATOM
B
C3'
DT
2
5
1.00
1
C
0.00
-5.819
-4.980
19.967
B
O3'
DT
16
ATOM
B
O3'
DT
2
5
1.00
1
O
0.00
-3.664
-4.372
18.955
B
C2'
DT
16
ATOM
B
C2'
DT
2
5
1.00
1
C
0.00
-3.336
-3.304
19.979
B
C1'
DT
16
ATOM
B
C1'
DT
2
5
1.00
1
C
0.00
-2.196
-2.439
19.591
B
N1
DT
16
ATOM
B
N1
DT
2
5
1.00
1
N
0.00
-2.430
-1.085
19.543
B
C2
DT
16
ATOM
B
C2
DT
2
5
1.00
1
C
0.00
-3.511
-0.572
19.790
B
O2
DT
16
ATOM
B
O2
DT
2
5
1.00
1
O
0.00
-1.370
-0.307
19.190
B
N3
DT
16
ATOM
B
N3
DT
2
5
1.00
1
N
0.00
-0.112
-0.720
18.880
B
C4
DT
16
ATOM
B
C4
DT
2
5
1.00
1
C
0.00
0.733
0.114
18.590
B
O4
DT
16
ATOM
B
O4
DT
2
5
1.00
1
O
0.00
0.073
-2.142
18.945
B
C5
DT
16
ATOM
B
C5
DT
2
5
1.00
1
C
0.00
1.448
-2.733
18.607
B
C7
DT
16
ATOM
B
C7
DT
2
5
1.00
1
C
0.00
-0.954
-2.944
19.293
B
C6
DT
16
ATOM
B
C6
DT
2
5
1.00
1
C
0.00
-2.239
-6.332
22.217
B
H5'
DT
16
ATOM
B
H5'
DT
2
5
1.00
1
H
0.00
-3.105
-7.372
21.080
B
H5''
DT
16
ATOM
B
H5''
DT
2
5
1.00
1
H
0.00
-4.403
-5.410
21.882
B
H4'
DT
16
ATOM
B
H4'
DT
2
5
1.00
1
H
0.00
-4.447
-6.358
19.340
B
H3'
DT
16
ATOM
B
H3'
DT
2
5
1.00
1
H
0.00
-2.764
-4.890
18.636
B
H2'
DT
16
ATOM
B
H2'
DT
2
5
1.00
1
H
0.00
-4.182
-3.976
18.084
B
H2''
DT
16
ATOM
B
H2''
DT
2
5
1.00
1
H
0.00
-4.246
-2.736
20.162
B
H1'
DT
16
ATOM
B
H1'
DT
2
5
1.00
1
H
0.00
-1.521
0.678
19.155
B
H3
DT
16
ATOM
B
H3
DT
2
5
1.00
1
H
0.00
1.664
-3.098
18.625
B
H71
DT
16
ATOM
B
H71
DT
2
5
1.00
1
H
0.00
1.782
-2.823
18.251
B
H72
DT
16
ATOM
B
H72
DT
2
5
1.00
1
H
0.00
1.889
-2.702
18.689
B
H73
DT
16
ATOM
B
H73
DT
2
5
1.00
1
H
0.00
-0.775
-4.012
19.336
B
H6
DT
16
ATOM
B
H6
DT
2
5
1.00
1
H
0.00
-6.888
-4.606
18.816
B
P
DA
17
ATOM
B
P
DA
2
6
1.00
1
P
0.00
-8.210
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B
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17
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B
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2
6
1.00
1
O
0.00
-6.392
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B
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17
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B
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2
6
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1
O
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-6.858
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B
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17
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B
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DA
2
6
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1
O
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-7.520
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B
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17
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B
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DA
2
6
1.00
1
C
0.00
-7.894
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B
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17
ATOM
B
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DA
2
6
1.00
1
C
0.00
-6.774
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17
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B
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DA
2
6
1.00
1
O
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-8.752
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17
ATOM
B
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DA
2
6
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1
C
0.00
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B
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17
ATOM
B
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DA
2
6
1.00
1
O
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-7.645
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17.057
B
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17
ATOM
B
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DA
2
6
1.00
1
C
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B
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17
ATOM
B
C1'
DA
2
6
1.00
1
C
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17.235
B
N9
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17
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B
N9
DA
2
6
1.00
1
N
0.00
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B
C8
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17
ATOM
B
C8
DA
2
6
1.00
1
C
0.00
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B
N7
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17
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B
N7
DA
2
6
1.00
1
N
0.00
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B
C5
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17
ATOM
B
C5
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2
6
1.00
1
C
0.00
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B
C6
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17
ATOM
B
C6
DA
2
6
1.00
1
C
0.00
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B
N6
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17
ATOM
B
N6
DA
2
6
1.00
1
N
0.00
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B
N1
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17
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B
N1
DA
2
6
1.00
1
N
0.00
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B
C2
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17
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B
C2
DA
2
6
1.00
1
C
0.00
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B
N3
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17
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N3
DA
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6
1.00
1
N
0.00
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B
C4
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17
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B
C4
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2
6
1.00
1
C
0.00
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B
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17
ATOM
B
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DA
2
6
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1
H
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-8.437
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20.085
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17
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2
6
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1
H
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-8.475
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B
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17
ATOM
B
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DA
2
6
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1
H
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-9.345
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17
ATOM
B
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DA
2
6
1.00
1
H
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-7.071
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17
ATOM
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DA
2
6
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1
H
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-8.020
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16.084
B
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17
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DA
2
6
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1
H
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-7.372
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17.451
B
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17
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DA
2
6
1.00
1
H
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-4.522
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17.105
B
H8
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17
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B
H8
DA
2
6
1.00
1
H
0.00
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B
H61
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17
ATOM
B
H61
DA
2
6
1.00
1
H
0.00
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B
H62
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17
ATOM
B
H62
DA
2
6
1.00
1
H
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B
H2
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17
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B
H2
DA
2
6
1.00
1
H
0.00
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B
P
DT
18
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B
P
DT
2
7
1.00
1
P
0.00
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B
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18
ATOM
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DT
2
7
1.00
1
O
0.00
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B
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18
ATOM
B
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DT
2
7
1.00
1
O
0.00
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B
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18
ATOM
B
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DT
2
7
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1
O
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-9.819
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18
ATOM
B
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DT
2
7
1.00
1
C
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-8.655
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B
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DT
18
ATOM
B
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DT
2
7
1.00
1
C
0.00
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B
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18
ATOM
B
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DT
2
7
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1
O
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-8.656
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12.645
B
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DT
18
ATOM
B
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DT
2
7
1.00
1
C
0.00
-8.597
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12.101
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DT
18
ATOM
B
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DT
2
7
1.00
1
O
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-7.422
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12.373
B
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DT
18
ATOM
B
C2'
DT
2
7
1.00
1
C
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-6.512
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13.485
B
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DT
18
ATOM
B
C1'
DT
2
7
1.00
1
C
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13.683
B
N1
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18
ATOM
B
N1
DT
2
7
1.00
1
N
0.00
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B
C2
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18
ATOM
B
C2
DT
2
7
1.00
1
C
0.00
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13.309
B
O2
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18
ATOM
B
O2
DT
2
7
1.00
1
O
0.00
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B
N3
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18
ATOM
B
N3
DT
2
7
1.00
1
N
0.00
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14.057
B
C4
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18
ATOM
B
C4
DT
2
7
1.00
1
C
0.00
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B
O4
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18
ATOM
B
O4
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2
7
1.00
1
O
0.00
-4.776
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14.161
B
C5
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18
ATOM
B
C5
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2
7
1.00
1
C
0.00
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14.482
B
C7
DT
18
ATOM
B
C7
DT
2
7
1.00
1
C
0.00
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B
C6
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18
ATOM
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C6
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2
7
1.00
1
C
0.00
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B
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18
ATOM
B
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DT
2
7
1.00
1
H
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-9.805
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14.468
B
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18
ATOM
B
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DT
2
7
1.00
1
H
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-8.661
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14.424
B
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18
ATOM
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DT
2
7
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1
H
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-9.527
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12.285
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DT
18
ATOM
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DT
2
7
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1
H
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-7.712
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12.423
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DT
18
ATOM
B
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DT
2
7
1.00
1
H
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-6.971
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11.438
B
H2''
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18
ATOM
B
H2''
DT
2
7
1.00
1
H
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-6.149
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13.360
B
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DT
18
ATOM
B
H1'
DT
2
7
1.00
1
H
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B
H3
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18
ATOM
B
H3
DT
2
7
1.00
1
H
0.00
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B
H71
DT
18
ATOM
B
H71
DT
2
7
1.00
1
H
0.00
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B
H72
DT
18
ATOM
B
H72
DT
2
7
1.00
1
H
0.00
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B
H73
DT
18
ATOM
B
H73
DT
2
7
1.00
1
H
0.00
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B
H6
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18
ATOM
B
H6
DT
2
7
1.00
1
H
0.00
-8.486
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B
P
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19
ATOM
B
P
DC
2
8
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1
P
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B
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DC
19
ATOM
B
OP1
DC
2
8
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1
O
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B
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19
ATOM
B
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DC
2
8
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1
O
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B
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19
ATOM
B
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DC
2
8
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1
O
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-6.345
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B
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DC
19
ATOM
B
C5'
DC
2
8
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1
C
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B
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DC
19
ATOM
B
C4'
DC
2
8
1.00
1
C
0.00
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B
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DC
19
ATOM
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O4'
DC
2
8
1.00
1
O
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8.758
B
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DC
19
ATOM
B
C3'
DC
2
8
1.00
1
C
0.00
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8.313
B
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19
ATOM
B
O3'
DC
2
8
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1
O
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8.602
B
C2'
DC
19
ATOM
B
C2'
DC
2
8
1.00
1
C
0.00
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B
C1'
DC
19
ATOM
B
C1'
DC
2
8
1.00
1
C
0.00
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B
N1
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19
ATOM
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N1
DC
2
8
1.00
1
N
0.00
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B
C2
DC
19
ATOM
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C2
DC
2
8
1.00
1
C
0.00
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B
O2
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19
ATOM
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O2
DC
2
8
1.00
1
O
0.00
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0.839
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B
N3
DC
19
ATOM
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N3
DC
2
8
1.00
1
N
0.00
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B
C4
DC
19
ATOM
B
C4
DC
2
8
1.00
1
C
0.00
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B
N4
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19
ATOM
B
N4
DC
2
8
1.00
1
N
0.00
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B
C5
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19
ATOM
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C5
DC
2
8
1.00
1
C
0.00
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B
C6
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19
ATOM
B
C6
DC
2
8
1.00
1
C
0.00
-6.352
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B
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DC
19
ATOM
B
H5'
DC
2
8
1.00
1
H
0.00
-6.871
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10.330
B
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DC
19
ATOM
B
H5''
DC
2
8
1.00
1
H
0.00
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6.403
10.571
B
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DC
19
ATOM
B
H4'
DC
2
8
1.00
1
H
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8.292
B
H3'
DC
19
ATOM
B
H3'
DC
2
8
1.00
1
H
0.00
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8.703
B
H2'
DC
19
ATOM
B
H2'
DC
2
8
1.00
1
H
0.00
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7.657
B
H2''
DC
19
ATOM
B
H2''
DC
2
8
1.00
1
H
0.00
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9.592
B
H1'
DC
19
ATOM
B
H1'
DC
2
8
1.00
1
H
0.00
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B
H41
DC
19
ATOM
B
H41
DC
2
8
1.00
1
H
0.00
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B
H42
DC
19
ATOM
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H42
DC
2
8
1.00
1
H
0.00
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B
H5
DC
19
ATOM
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H5
DC
2
8
1.00
1
H
0.00
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B
H6
DC
19
ATOM
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H6
DC
2
8
1.00
1
H
0.00
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B
P
DG
20
ATOM
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P
DG
2
9
1.00
1
P
0.00
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B
OP1
DG
20
ATOM
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OP1
DG
2
9
1.00
1
O
0.00
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B
OP2
DG
20
ATOM
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OP2
DG
2
9
1.00
1
O
0.00
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7.047
B
O5'
DG
20
ATOM
B
O5'
DG
2
9
1.00
1
O
0.00
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6.734
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B
C5'
DG
20
ATOM
B
C5'
DG
2
9
1.00
1
C
0.00
0.628
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7.697
B
C4'
DG
20
ATOM
B
C4'
DG
2
9
1.00
1
C
0.00
0.726
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8.095
B
O4'
DG
20
ATOM
B
O4'
DG
2
9
1.00
1
O
0.00
1.195
6.311
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B
C3'
DG
20
ATOM
B
C3'
DG
2
9
1.00
1
C
0.00
2.601
6.578
6.310
B
O3'
DG
20
ATOM
B
O3'
DG
2
9
1.00
1
O
0.00
0.874
4.943
5.836
B
C2'
DG
20
ATOM
B
C2'
DG
2
9
1.00
1
C
0.00
1.258
4.130
7.012
B
C1'
DG
20
ATOM
B
C1'
DG
2
9
1.00
1
C
0.00
0.693
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7.050
B
N9
DG
20
ATOM
B
N9
DG
2
9
1.00
1
N
0.00
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6.974
B
C8
DG
20
ATOM
B
C8
DG
2
9
1.00
1
C
0.00
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7.096
B
N7
DG
20
ATOM
B
N7
DG
2
9
1.00
1
N
0.00
0.495
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7.260
B
C5
DG
20
ATOM
B
C5
DG
2
9
1.00
1
C
0.00
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7.441
B
C6
DG
20
ATOM
B
C6
DG
2
9
1.00
1
C
0.00
0.316
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7.503
B
O6
DG
20
ATOM
B
O6
DG
2
9
1.00
1
O
0.00
2.313
-0.713
7.564
B
N1
DG
20
ATOM
B
N1
DG
2
9
1.00
1
N
0.00
3.148
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7.518
B
C2
DG
20
ATOM
B
C2
DG
2
9
1.00
1
C
0.00
4.436
0.162
7.618
B
N2
DG
20
ATOM
B
N2
DG
2
9
1.00
1
N
0.00
2.734
1.597
7.351
B
N3
DG
20
ATOM
B
N3
DG
2
9
1.00
1
N
0.00
1.401
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7.230
B
C4
DG
20
ATOM
B
C4
DG
2
9
1.00
1
C
0.00
-1.101
6.630
8.869
B
H5'
DG
20
ATOM
B
H5'
DG
2
9
1.00
1
H
0.00
-0.806
7.776
7.584
B
H5''
DG
20
ATOM
B
H5''
DG
2
9
1.00
1
H
0.00
1.266
6.804
8.333
B
H4'
DG
20
ATOM
B
H4'
DG
2
9
1.00
1
H
0.00
0.703
7.075
5.741
B
H3'
DG
20
ATOM
B
H3'
DG
2
9
1.00
1
H
0.00
-0.196
4.871
5.701
B
H2'
DG
20
ATOM
B
H2'
DG
2
9
1.00
1
H
0.00
1.396
4.668
4.935
B
H2''
DG
20
ATOM
B
H2''
DG
2
9
1.00
1
H
0.00
2.335
4.105
7.108
B
H1'
DG
20
ATOM
B
H1'
DG
2
9
1.00
1
H
0.00
-1.403
3.105
6.803
B
H8
DG
20
ATOM
B
H8
DG
2
9
1.00
1
H
0.00
2.670
-1.636
7.698
B
H1
DG
20
ATOM
B
H1
DG
2
9
1.00
1
H
0.00
4.794
-0.730
7.880
B
H21
DG
20
ATOM
B
H21
DG
2
9
1.00
1
H
0.00
5.043
0.935
7.421
B
H22
DG
20
ATOM
B
H22
DG
2
9
1.00
1
H
0.00
3.651
6.527
5.102
B
P
DC
21
ATOM
B
P
DC
2
10
1.00
1
P
0.00
4.563
7.625
5.249
B
OP1
DC
21
ATOM
B
OP1
DC
2
10
1.00
1
O
0.00
2.910
6.380
3.889
B
OP2
DC
21
ATOM
B
OP2
DC
2
10
1.00
1
O
0.00
4.493
5.209
5.323
B
O5'
DC
21
ATOM
B
O5'
DC
2
10
1.00
1
O
0.00
5.535
5.097
6.249
B
C5'
DC
21
ATOM
B
C5'
DC
2
10
1.00
1
C
0.00
6.502
3.982
5.969
B
C4'
DC
21
ATOM
B
C4'
DC
2
10
1.00
1
C
0.00
5.864
2.734
5.995
B
O4'
DC
21
ATOM
B
O4'
DC
2
10
1.00
1
O
0.00
7.197
4.118
4.661
B
C3'
DC
21
ATOM
B
C3'
DC
2
10
1.00
1
C
0.00
8.509
3.652
4.694
B
O3'
DC
21
ATOM
B
O3'
DC
2
10
1.00
1
O
0.00
6.298
3.318
3.861
B
C2'
DC
21
ATOM
B
C2'
DC
2
10
1.00
1
C
0.00
5.891
2.195
4.733
B
C1'
DC
21
ATOM
B
C1'
DC
2
10
1.00
1
C
0.00
4.547
1.633
4.541
B
N1
DC
21
ATOM
B
N1
DC
2
10
1.00
1
N
0.00
4.399
0.273
4.598
B
C2
DC
21
ATOM
B
C2
DC
2
10
1.00
1
C
0.00
5.342
-0.460
4.760
B
O2
DC
21
ATOM
B
O2
DC
2
10
1.00
1
O
0.00
3.171
-0.255
4.466
B
N3
DC
21
ATOM
B
N3
DC
2
10
1.00
1
N
0.00
2.120
0.508
4.282
B
C4
DC
21
ATOM
B
C4
DC
2
10
1.00
1
C
0.00
0.943
-0.067
4.168
B
N4
DC
21
ATOM
B
N4
DC
2
10
1.00
1
N
0.00
2.244
1.908
4.214
B
C5
DC
21
ATOM
B
C5
DC
2
10
1.00
1
C
0.00
3.472
2.423
4.347
B
C6
DC
21
ATOM
B
C6
DC
2
10
1.00
1
C
0.00
5.106
4.905
7.192
B
H5'
DC
21
ATOM
B
H5'
DC
2
10
1.00
1
H
0.00
6.085
6.007
6.274
B
H5''
DC
21
ATOM
B
H5''
DC
2
10
1.00
1
H
0.00
7.247
3.967
6.715
B
H4'
DC
21
ATOM
B
H4'
DC
2
10
1.00
1
H
0.00
7.222
5.125
4.357
B
H3'
DC
21
ATOM
B
H3'
DC
2
10
1.00
1
H
0.00
5.488
3.949
3.657
B
H2'
DC
21
ATOM
B
H2'
DC
2
10
1.00
1
H
0.00
6.756
2.993
2.986
B
H2''
DC
21
ATOM
B
H2''
DC
2
10
1.00
1
H
0.00
6.642
1.455
4.668
B
H1'
DC
21
ATOM
B
H1'
DC
2
10
1.00
1
H
0.00
0.894
-1.063
4.255
B
H41
DC
21
ATOM
B
H41
DC
2
10
1.00
1
H
0.00
0.117
0.465
4.003
B
H42
DC
21
ATOM
B
H42
DC
2
10
1.00
1
H
0.00
1.374
2.520
4.068
B
H5
DC
21
ATOM
B
H5
DC
2
10
1.00
1
H
0.00
3.606
3.490
4.292
B
H6
DC
21
ATOM
B
H6
DC
2
10
1.00
1
H
0.00
9.480
3.482
3.499
B
P
DG
22
ATOM
B
P
DG
2
11
1.00
1
P
0.00
10.744
3.143
3.866
B
OP1
DG
22
ATOM
B
OP1
DG
2
11
1.00
1
O
0.00
9.366
4.497
2.687
B
OP2
DG
22
ATOM
B
OP2
DG
2
11
1.00
1
O
0.00
8.881
2.366
2.926
B
O5'
DG
22
ATOM
B
O5'
DG
2
11
1.00
1
O
0.00
9.338
1.779
1.871
B
C5'
DG
22
ATOM
B
C5'
DG
2
11
1.00
1
C
0.00
9.566
0.428
2.091
B
C4'
DG
22
ATOM
B
C4'
DG
2
11
1.00
1
C
0.00
8.420
-0.214
2.553
B
O4'
DG
22
ATOM
B
O4'
DG
2
11
1.00
1
O
0.00
9.913
-0.255
0.945
B
C3'
DG
22
ATOM
B
C3'
DG
2
11
1.00
1
C
0.00
10.514
-1.362
1.203
B
O3'
DG
22
ATOM
B
O3'
DG
2
11
1.00
1
O
0.00
8.581
-0.570
0.502
B
C2'
DG
22
ATOM
B
C2'
DG
2
11
1.00
1
C
0.00
7.877
-1.005
1.617
B
C1'
DG
22
ATOM
B
C1'
DG
2
11
1.00
1
C
0.00
6.481
-0.874
1.553
B
N9
DG
22
ATOM
B
N9
DG
2
11
1.00
1
N
0.00
5.811
0.230
1.480
B
C8
DG
22
ATOM
B
C8
DG
2
11
1.00
1
C
0.00
4.567
0.017
1.450
B
N7
DG
22
ATOM
B
N7
DG
2
11
1.00
1
N
0.00
4.403
-1.328
1.505
B
C5
DG
22
ATOM
B
C5
DG
2
11
1.00
1
C
0.00
3.261
-2.142
1.505
B
C6
DG
22
ATOM
B
C6
DG
2
11
1.00
1
C
0.00
2.134
-1.854
1.464
B
O6
DG
22
ATOM
B
O6
DG
2
11
1.00
1
O
0.00
3.523
-3.434
1.570
B
N1
DG
22
ATOM
B
N1
DG
2
11
1.00
1
N
0.00
4.730
-3.902
1.632
B
C2
DG
22
ATOM
B
C2
DG
2
11
1.00
1
C
0.00
4.798
-5.175
1.707
B
N2
DG
22
ATOM
B
N2
DG
2
11
1.00
1
N
0.00
5.810
-3.152
1.633
B
N3
DG
22
ATOM
B
N3
DG
2
11
1.00
1
N
0.00
5.571
-1.877
1.568
B
C4
DG
22
ATOM
B
C4
DG
2
11
1.00
1
C
0.00
10.229
2.226
1.545
B
H5'
DG
22
ATOM
B
H5'
DG
2
11
1.00
1
H
0.00
8.612
1.868
1.202
B
H5''
DG
22
ATOM
B
H5''
DG
2
11
1.00
1
H
0.00
10.322
0.383
2.736
B
H4'
DG
22
ATOM
B
H4'
DG
2
11
1.00
1
H
0.00
10.513
0.322
0.353
B
H3'
DG
22
ATOM
B
H3'
DG
2
11
1.00
1
H
0.00
10.370
-1.800
1.460
B
HO3'
DG
22
ATOM
B
HO3'
DG
2
11
1.00
1
H
0.00
8.189
0.266
0.188
B
H2'
DG
22
ATOM
B
H2'
DG
2
11
1.00
1
H
0.00
8.518
-1.282
-0.187
B
H2''
DG
22
ATOM
B
H2''
DG
2
11
1.00
1
H
0.00
8.070
-1.967
1.764
B
H1'
DG
22
ATOM
B
H1'
DG
2
11
1.00
1
H
0.00
6.276
1.200
1.446
B
H8
DG
22
ATOM
B
H8
DG
2
11
1.00
1
H
0.00
2.738
-4.056
1.556
B
H1
DG
22
ATOM
B
H1
DG
2
11
1.00
1
H
0.00
3.977
-5.749
1.722
B
H21
DG
22
ATOM
B
H21
DG
2
11
1.00
1
H
0.00
5.676
-5.562
1.755
B
H22
DG
22
ATOM
B
H22
DG
2
11
1.00
1
H
0.00
-2.818
5.490
14.311
B
O
HOH
23
HETATM
C
O
HOH
3
1.00
1
O
0.00
-2.469
5.604
14.147
B
H1
HOH
23
HETATM
C
H1
HOH
3
1.00
1
H
0.00
-3.142
4.984
15.030
B
H2
HOH
23
HETATM
C
H2
HOH
3
1.00
1
H
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Beger, R.D.
Bolton, P.H.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
1
90.00
90.00
90.00
1.000
1.000
1.000
C5 H11 O7 P
214.110
2'-DEOXY-RIBOFURANOSE-5'-MONOPHOSPHATE
ABASIC DEOXYRIBOSE
DNA linking
C10 H14 N5 O6 P
331.222
y
2'-DEOXYADENOSINE-5'-MONOPHOSPHATE
DNA linking
C9 H14 N3 O7 P
307.197
y
2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE
DNA linking
C10 H14 N5 O7 P
347.221
y
2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE
DNA linking
C10 H15 N2 O8 P
322.208
y
THYMIDINE-5'-MONOPHOSPHATE
DNA linking
H2 O
18.015
WATER
non-polymer
N
1
N
P
N
2
N
O
N
3
N
O
N
4
N
O
N
5
N
O
N
6
N
C
N
7
R
C
N
8
N
O
N
9
R
C
N
10
N
O
N
11
N
C
N
12
S
C
N
13
N
O
N
14
N
H
N
15
N
H
N
16
N
H
N
17
N
H
N
18
N
H
N
19
N
H
N
20
N
H
N
21
N
H
N
22
N
H
N
23
N
H
N
24
N
H
N
25
N
O
N
26
N
P
N
27
N
O
N
28
N
O
N
29
N
O
N
30
N
C
N
31
R
C
N
32
N
O
N
33
S
C
N
34
N
O
N
35
N
C
N
36
R
C
Y
37
N
N
Y
38
N
C
Y
39
N
N
Y
40
N
C
Y
41
N
C
N
42
N
N
Y
43
N
N
Y
44
N
C
Y
45
N
N
Y
46
N
C
N
47
N
H
N
48
N
H
N
49
N
H
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
H
N
59
N
H
N
60
N
H
N
61
N
O
N
62
N
P
N
63
N
O
N
64
N
O
N
65
N
O
N
66
N
C
N
67
R
C
N
68
N
O
N
69
S
C
N
70
N
O
N
71
N
C
N
72
R
C
N
73
N
N
N
74
N
C
N
75
N
O
N
76
N
N
N
77
N
C
N
78
N
N
N
79
N
C
N
80
N
C
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
H
N
89
N
H
N
90
N
H
N
91
N
H
N
92
N
H
N
93
N
H
N
94
N
H
N
95
N
O
N
96
N
P
N
97
N
O
N
98
N
O
N
99
N
O
N
100
N
C
N
101
R
C
N
102
N
O
N
103
S
C
N
104
N
O
N
105
N
C
N
106
R
C
Y
107
N
N
Y
108
N
C
Y
109
N
N
Y
110
N
C
N
111
N
C
N
112
N
O
N
113
N
N
N
114
N
C
N
115
N
N
N
116
N
N
Y
117
N
C
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
H
N
128
N
H
N
129
N
H
N
130
N
H
N
131
N
H
N
132
N
O
N
133
N
P
N
134
N
O
N
135
N
O
N
136
N
O
N
137
N
C
N
138
R
C
N
139
N
O
N
140
S
C
N
141
N
O
N
142
N
C
N
143
R
C
N
144
N
N
N
145
N
C
N
146
N
O
N
147
N
N
N
148
N
C
N
149
N
O
N
150
N
C
N
151
N
C
N
152
N
C
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
H
N
159
N
H
N
160
N
H
N
161
N
H
N
162
N
H
N
163
N
H
N
164
N
H
N
165
N
H
N
166
N
H
N
167
N
H
N
168
N
O
N
169
N
H
N
170
N
H
N
1
N
sing
N
2
N
doub
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
sing
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
sing
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
doub
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
sing
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
sing
N
46
N
sing
N
47
N
sing
Y
48
N
sing
Y
49
N
sing
Y
50
N
doub
N
51
N
sing
Y
52
N
sing
Y
53
N
sing
Y
54
N
doub
N
55
N
sing
Y
56
N
doub
N
57
N
sing
N
58
N
sing
Y
59
N
sing
Y
60
N
doub
N
61
N
sing
Y
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
doub
N
66
N
sing
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
sing
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
doub
N
89
N
sing
N
90
N
doub
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
doub
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
doub
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
Y
121
N
sing
Y
122
N
sing
Y
123
N
doub
N
124
N
sing
Y
125
N
sing
N
126
N
sing
Y
127
N
doub
N
128
N
doub
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
doub
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
doub
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
doub
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
doub
N
167
N
sing
N
168
N
sing
N
169
N
doub
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
US
J.Biol.Chem.
JBCHA3
0071
0021-9258
273
15565
15573
10.1074/jbc.273.25.15565
9624147
Structures of apurinic and apyrimidinic sites in duplex DNAs.
1998
10.2210/pdb1a9i/pdb
pdb_00001a9i
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
3211.077
DNA (5'-D(*CP*GP*CP*GP*AP*AABP*AP*CP*GP*CP*C)-3')
1
syn
polymer
3390.209
DNA (5'-D(*GP*GP*CP*GP*TP*AP*TP*CP*GP*CP*G)-3')
1
syn
polymer
18.015
water
1
nat
water
no
yes
(DC)(DG)(DC)(DG)(DA)(AAB)(DA)(DC)(DG)(DC)(DC)
CGCGAXACGCC
A
polydeoxyribonucleotide
no
no
(DG)(DG)(DC)(DG)(DT)(DA)(DT)(DC)(DG)(DC)(DG)
GGCGTATCGCG
B
polydeoxyribonucleotide
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
-14.047
1
19
A
1
B
22
-2.366
A_DC1:DG22_B
1
5.328
0.410
0.382
-0.325
-3.392
1
19
A
2
B
21
-1.651
A_DG2:DC21_B
2
-4.287
-0.572
0.233
-0.472
-5.381
1
19
A
3
B
20
-0.551
A_DC3:DG20_B
3
0.473
0.601
0.255
-0.395
-0.355
1
19
A
4
B
19
-2.189
A_DG4:DC19_B
4
1.003
-0.617
0.077
-0.365
2.047
1
20
A
5
B
18
-3.047
A_DA5:DT18_B
5
-1.858
0.083
0.188
-0.152
9.564
1
20
A
7
B
16
-7.470
A_DA7:DT16_B
6
-21.089
0.219
0.533
-0.213
3.094
1
19
A
8
B
15
-1.269
A_DC8:DG15_B
7
-0.209
0.614
0.137
-0.342
10.985
1
19
A
9
B
14
-0.769
A_DG9:DC14_B
8
1.914
-0.569
0.255
-0.323
17.078
1
19
A
10
B
13
0.993
A_DC10:DG13_B
9
-7.586
0.643
-0.264
-0.356
6.804
1
19
A
11
B
12
2.236
A_DC11:DG12_B
10
-5.440
0.555
0.043
-0.396
2.894
28.209
A
A
1
2
-2.804
B
B
22
21
2.863
-1.363
0.029
-0.996
AA_DC1DG2:DC21DG22_BB
1
3.004
-6.177
28.019
-1.764
0.559
3.257
48.098
A
A
2
3
-3.295
B
B
21
20
3.213
-2.683
0.463
-0.613
AA_DG2DC3:DG20DC21_BB
2
2.119
-2.602
47.983
-0.543
-0.404
3.518
32.307
A
A
3
4
-15.896
B
B
20
19
3.242
-8.724
-0.057
-1.577
AA_DC3DG4:DC19DG20_BB
3
3.464
-6.312
30.948
-1.200
0.752
3.129
36.438
A
A
4
5
-0.981
B
B
19
18
3.109
-0.614
0.191
-1.275
AA_DG4DA5:DT18DC19_BB
4
-0.084
0.135
36.433
-1.957
-0.317
5.457
80.426
A
A
5
7
9.604
B
B
18
16
5.543
12.357
-0.907
0.305
AA_DA5DA7:DT16DT18_BB
5
6.931
-5.387
79.378
-0.313
1.010
3.477
46.798
A
A
7
8
-19.012
B
B
16
15
3.727
-14.865
0.366
0.222
AA_DA7DC8:DG15DT16_BB
6
-1.235
1.580
44.484
1.680
-0.577
3.575
31.062
A
A
8
9
-25.420
B
B
15
14
3.306
-13.191
0.140
-1.403
AA_DC8DG9:DC14DG15_BB
7
-1.906
3.672
28.121
0.183
-0.666
3.059
45.639
A
A
9
10
-0.165
B
B
14
13
3.038
-0.128
0.350
-0.412
AA_DG9DC10:DG13DC14_BB
8
4.268
-5.509
45.450
-0.520
-0.103
3.807
31.950
A
A
10
11
-14.791
B
B
13
12
3.780
-8.037
1.135
-1.280
AA_DC10DC11:DG12DG13_BB
9
-4.059
7.471
30.687
-0.600
-2.933
chem_comp_atom
chem_comp_bond
database_2
pdbx_database_status
struct_conn
repository
Initial release
Version format compliance
Version format compliance
Structure summary
Data collection
Database references
Derived calculations
Other
1
0
1998-07-15
1
1
2008-03-24
1
2
2011-07-13
1
3
2014-07-09
1
4
2024-04-10
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_database_status.process_site
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
Y
BNL
1998-04-06
REL
HOH
water
100MS NOESY, 250MS NOESY 250MS QUIETNOESY 70MS BAND-SELECTIVE J TOCSY FOR PHOSPHOROUS "J SCALE" SET TO 2 AND 3
AVERAGE OF 5 STRUCTURES THAT THE NOESY BACKCALCULATION AGREES WITH EXPERIMENTAL NOESY
100
1
NOESY
PECOSY
TOCSY
ROESY
QUIET-NOESY
50 mM KCL
7.0
1
atm
300
K
matrix relaxation
TRIS
BRUNGER
refinement
X-PLOR
3.1
structure solution
VNMR
400
Varian
UNITY
500
Varian
INOVA
HOH
23
3
HOH
HOH
23
B
C
1
n
1
DC
1
A
G
2
n
2
DG
2
A
C
3
n
3
DC
3
A
G
4
n
4
DG
4
A
A
5
n
5
DA
5
A
AAB
6
n
6
AAB
6
A
A
7
n
7
DA
7
A
C
8
n
8
DC
8
A
G
9
n
9
DG
9
A
C
10
n
10
DC
10
A
C
11
n
11
DC
11
A
G
12
n
1
DG
12
B
G
13
n
2
DG
13
B
C
14
n
3
DC
14
B
G
15
n
4
DG
15
B
T
16
n
5
DT
16
B
A
17
n
6
DA
17
B
T
18
n
7
DT
18
B
C
19
n
8
DC
19
B
G
20
n
9
DG
20
B
C
21
n
10
DC
21
B
G
22
n
11
DG
22
B
author_defined_assembly
2
dimeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1
A
A
O3'
P
DC
DG
1
2
1.35
1
-8.19
0.80
105.90
97.71
A
A
A
O4'
C1'
C2'
DC
DC
DC
1
1
1
N
1
4.52
0.30
108.30
112.82
A
A
A
O4'
C1'
N1
DC
DC
DC
1
1
1
N
1
3.89
0.60
118.90
122.79
A
A
A
N1
C2
O2
DC
DC
DC
1
1
1
N
1
-5.65
0.70
121.90
116.25
A
A
A
N3
C2
O2
DC
DC
DC
1
1
1
N
1
7.63
1.20
119.70
127.33
A
A
A
C3'
O3'
P
DC
DC
DG
1
1
2
Y
1
4.35
0.30
108.30
112.65
A
A
A
O4'
C1'
N9
DG
DG
DG
2
2
2
N
1
7.45
1.20
119.70
127.15
A
A
A
C3'
O3'
P
DC
DC
DG
3
3
4
Y
1
3.67
0.30
108.30
111.97
A
A
A
O4'
C1'
N9
DA
DA
DA
5
5
5
N
1
7.37
1.20
119.70
127.07
A
A
A
C3'
O3'
P
AAB
AAB
DA
6
6
7
Y
1
7.48
1.20
119.70
127.18
A
A
A
C3'
O3'
P
DA
DA
DC
7
7
8
Y
1
7.74
1.20
119.70
127.44
A
A
A
C3'
O3'
P
DC
DC
DG
8
8
9
Y
1
2.37
0.30
108.30
110.67
A
A
A
O4'
C1'
N9
DG
DG
DG
9
9
9
N
1
22.52
1.60
120.90
143.42
A
A
A
P
O5'
C5'
DC
DC
DC
11
11
11
N
1
5.65
0.30
108.30
113.95
A
A
A
O4'
C1'
N1
DC
DC
DC
11
11
11
N
1
-2.66
0.40
121.90
119.24
A
A
A
N3
C4
C5
DC
DC
DC
11
11
11
N
1
6.97
0.60
106.00
112.97
B
B
B
O4'
C4'
C3'
DG
DG
DG
12
12
12
N
1
3.71
0.30
108.30
112.01
B
B
B
O4'
C1'
N9
DG
DG
DG
12
12
12
N
1
3.81
0.30
108.30
112.11
B
B
B
O4'
C1'
N9
DG
DG
DG
13
13
13
N
1
7.48
1.20
119.70
127.18
B
B
B
C3'
O3'
P
DG
DG
DT
15
15
16
Y
1
3.69
0.30
108.30
111.99
B
B
B
O4'
C1'
N1
DT
DT
DT
16
16
16
N
1
-4.40
0.70
102.20
97.80
B
B
B
C4'
C3'
C2'
DA
DA
DA
17
17
17
N
1
9.65
1.20
119.70
129.35
B
B
B
C3'
O3'
P
DA
DA
DT
17
17
18
Y
1
-6.88
0.80
105.90
99.02
B
B
B
O4'
C1'
C2'
DT
DT
DT
18
18
18
N
1
2.36
0.30
108.30
110.66
B
B
B
O4'
C1'
N1
DT
DT
DT
18
18
18
N
1
3.80
0.60
118.90
122.70
B
B
B
N1
C2
O2
DC
DC
DC
19
19
19
N
1
9.18
1.20
119.70
128.88
B
B
B
C3'
O3'
P
DG
DG
DC
20
20
21
Y
1
7.81
1.20
119.70
127.51
B
B
B
C3'
O3'
P
DC
DC
DG
21
21
22
Y
1
-4.65
0.70
102.20
97.55
B
B
B
C4'
C3'
C2'
DG
DG
DG
22
22
22
N
1
-6.08
0.80
105.90
99.82
B
B
B
O4'
C1'
C2'
DG
DG
DG
22
22
22
N
1
4.01
0.30
108.30
112.31
B
B
B
O4'
C1'
N9
DG
DG
DG
22
22
22
N
1
-2.50
0.40
110.80
108.30
B
B
B
C4
C5
N7
DG
DG
DG
22
22
22
N
1
-4.04
0.60
119.90
115.86
B
B
B
N1
C6
O6
DG
DG
DG
22
22
22
N
1
A
A
C4'
C3'
DC
DC
1
1
-0.153
0.010
1.521
1.368
N
1
A
A
C3'
C2'
DC
DC
1
1
-0.101
0.008
1.516
1.415
N
1
A
A
C2'
C1'
DC
DC
1
1
-0.094
0.010
1.518
1.424
N
1
A
A
O4'
C1'
DC
DC
1
1
-0.110
0.012
1.418
1.308
N
1
A
A
O4'
C4'
DC
DC
1
1
-0.067
0.010
1.446
1.379
N
1
A
A
O3'
C3'
DC
DC
1
1
-0.082
0.006
1.419
1.337
N
1
A
A
C2
O2
DC
DC
1
1
-0.103
0.009
1.240
1.137
N
1
A
A
C4
N4
DC
DC
1
1
-0.085
0.009
1.335
1.250
N
1
A
A
N1
C6
DC
DC
1
1
-0.099
0.006
1.367
1.268
N
1
A
A
C2
N3
DC
DC
1
1
-0.079
0.008
1.353
1.274
N
1
A
A
N3
C4
DC
DC
1
1
-0.101
0.007
1.335
1.234
N
1
A
A
C5
C6
DC
DC
1
1
-0.073
0.008
1.339
1.266
N
1
A
A
O3'
P
DC
DG
1
2
-0.261
0.012
1.607
1.346
Y
1
A
A
P
OP1
DG
DG
2
2
-0.194
0.017
1.485
1.291
N
1
A
A
P
OP2
DG
DG
2
2
-0.178
0.017
1.485
1.307
N
1
A
A
P
O5'
DG
DG
2
2
-0.139
0.010
1.593
1.454
N
1
A
A
C4'
C3'
DG
DG
2
2
-0.061
0.010
1.521
1.460
N
1
A
A
C2'
C1'
DG
DG
2
2
-0.071
0.010
1.518
1.447
N
1
A
A
O3'
C3'
DG
DG
2
2
-0.038
0.006
1.419
1.381
N
1
A
A
N9
C4
DG
DG
2
2
-0.050
0.008
1.375
1.325
N
1
A
A
O3'
C3'
DG
DG
4
4
-0.037
0.006
1.419
1.382
N
1
A
A
P
OP1
DA
DA
5
5
-0.112
0.017
1.485
1.373
N
1
A
A
P
OP2
DA
DA
5
5
-0.110
0.017
1.485
1.375
N
1
A
A
P
OP1
DA
DA
7
7
-0.104
0.017
1.485
1.381
N
1
A
A
O3'
P
DA
DC
7
8
-0.127
0.012
1.607
1.480
Y
1
A
A
P
OP1
DC
DC
8
8
-0.107
0.017
1.485
1.378
N
1
A
A
P
O5'
DC
DC
8
8
-0.119
0.010
1.593
1.474
N
1
A
A
P
OP1
DC
DC
11
11
-0.284
0.017
1.485
1.201
N
1
A
A
P
OP2
DC
DC
11
11
-0.349
0.017
1.485
1.136
N
1
A
A
P
O5'
DC
DC
11
11
-0.359
0.010
1.593
1.234
N
1
A
A
C2'
C1'
DC
DC
11
11
-0.073
0.010
1.518
1.445
N
1
A
A
O3'
C3'
DC
DC
11
11
-0.045
0.006
1.419
1.374
N
1
A
A
C2
O2
DC
DC
11
11
-0.065
0.009
1.240
1.175
N
1
A
A
N1
C2
DC
DC
11
11
-0.073
0.010
1.397
1.324
N
1
A
A
N1
C6
DC
DC
11
11
-0.058
0.006
1.367
1.309
N
1
A
A
N3
C4
DC
DC
11
11
-0.056
0.007
1.335
1.279
N
1
A
A
C4
C5
DC
DC
11
11
-0.053
0.008
1.425
1.372
N
1
B
B
C5'
C4'
DG
DG
12
12
-0.184
0.011
1.509
1.325
N
1
B
B
C4'
C3'
DG
DG
12
12
-0.077
0.010
1.521
1.444
N
1
B
B
O4'
C4'
DG
DG
12
12
-0.069
0.010
1.446
1.377
N
1
B
B
O3'
P
DG
DT
15
16
-0.124
0.012
1.607
1.483
Y
1
B
B
P
OP1
DT
DT
16
16
-0.146
0.017
1.485
1.339
N
1
B
B
P
O5'
DT
DT
16
16
-0.077
0.010
1.593
1.516
N
1
B
B
C5
C7
DT
DT
16
16
0.038
0.006
1.496
1.534
N
1
B
B
O3'
P
DT
DC
18
19
-0.084
0.012
1.607
1.523
Y
1
B
B
C3'
C2'
DC
DC
21
21
-0.071
0.008
1.516
1.445
N
1
B
B
P
OP1
DG
DG
22
22
-0.126
0.017
1.485
1.359
N
1
B
B
P
OP2
DG
DG
22
22
-0.180
0.017
1.485
1.305
N
1
B
B
P
O5'
DG
DG
22
22
-0.203
0.010
1.593
1.390
N
1
B
B
C5'
C4'
DG
DG
22
22
-0.121
0.011
1.509
1.388
N
1
B
B
C4'
C3'
DG
DG
22
22
-0.143
0.010
1.521
1.378
N
1
B
B
C3'
C2'
DG
DG
22
22
-0.077
0.008
1.516
1.439
N
1
B
B
C2'
C1'
DG
DG
22
22
-0.129
0.010
1.518
1.389
N
1
B
B
O4'
C1'
DG
DG
22
22
-0.078
0.012
1.418
1.340
N
1
B
B
O3'
C3'
DG
DG
22
22
-0.133
0.006
1.419
1.286
N
1
B
B
N1
C2
DG
DG
22
22
-0.077
0.008
1.373
1.296
N
1
B
B
N3
C4
DG
DG
22
22
-0.051
0.007
1.350
1.299
N
1
B
B
C4
C5
DG
DG
22
22
-0.087
0.007
1.379
1.292
N
1
B
B
C6
N1
DG
DG
22
22
-0.071
0.007
1.391
1.320
N
1
B
B
N7
C8
DG
DG
22
22
-0.043
0.006
1.305
1.262
N
1
B
B
C8
N9
DG
DG
22
22
-0.081
0.007
1.374
1.293
N
1
B
B
C2
N2
DG
DG
22
22
-0.064
0.010
1.341
1.277
N
1
B
B
C6
O6
DG
DG
22
22
-0.073
0.009
1.237
1.164
N
model building
X-PLOR
3.1
refinement
X-PLOR
3.1
phasing
X-PLOR
3.1
APYRIMIDINIC DNA WITH BOUND WATER AT THE DAMAGED SITE, ALPHA FORM, NMR, 1 STRUCTURE
1
N
N
2
N
N
3
N
N
covale
1.540
one
A
DA
5
A
O3'
DA
5
1_555
A
AAB
6
A
P
AAB
6
1_555
covale
1.566
one
A
AAB
6
A
O3'
AAB
6
1_555
A
DA
7
A
P
DA
7
1_555
hydrog
WATSON-CRICK
A
DC
1
A
N3
DC
1
1_555
B
DG
22
B
N1
DG
11
1_555
hydrog
WATSON-CRICK
A
DC
1
A
N4
DC
1
1_555
B
DG
22
B
O6
DG
11
1_555
hydrog
WATSON-CRICK
A
DC
1
A
O2
DC
1
1_555
B
DG
22
B
N2
DG
11
1_555
hydrog
WATSON-CRICK
A
DG
2
A
N1
DG
2
1_555
B
DC
21
B
N3
DC
10
1_555
hydrog
WATSON-CRICK
A
DG
2
A
N2
DG
2
1_555
B
DC
21
B
O2
DC
10
1_555
hydrog
WATSON-CRICK
A
DG
2
A
O6
DG
2
1_555
B
DC
21
B
N4
DC
10
1_555
hydrog
WATSON-CRICK
A
DC
3
A
N3
DC
3
1_555
B
DG
20
B
N1
DG
9
1_555
hydrog
WATSON-CRICK
A
DC
3
A
N4
DC
3
1_555
B
DG
20
B
O6
DG
9
1_555
hydrog
WATSON-CRICK
A
DC
3
A
O2
DC
3
1_555
B
DG
20
B
N2
DG
9
1_555
hydrog
WATSON-CRICK
A
DG
4
A
N1
DG
4
1_555
B
DC
19
B
N3
DC
8
1_555
hydrog
WATSON-CRICK
A
DG
4
A
N2
DG
4
1_555
B
DC
19
B
O2
DC
8
1_555
hydrog
WATSON-CRICK
A
DG
4
A
O6
DG
4
1_555
B
DC
19
B
N4
DC
8
1_555
hydrog
WATSON-CRICK
A
DA
5
A
N1
DA
5
1_555
B
DT
18
B
N3
DT
7
1_555
hydrog
WATSON-CRICK
A
DA
5
A
N6
DA
5
1_555
B
DT
18
B
O4
DT
7
1_555
hydrog
WATSON-CRICK
A
DA
7
A
N1
DA
7
1_555
B
DT
16
B
N3
DT
5
1_555
hydrog
WATSON-CRICK
A
DA
7
A
N6
DA
7
1_555
B
DT
16
B
O4
DT
5
1_555
hydrog
WATSON-CRICK
A
DC
8
A
N3
DC
8
1_555
B
DG
15
B
N1
DG
4
1_555
hydrog
WATSON-CRICK
A
DC
8
A
N4
DC
8
1_555
B
DG
15
B
O6
DG
4
1_555
hydrog
WATSON-CRICK
A
DC
8
A
O2
DC
8
1_555
B
DG
15
B
N2
DG
4
1_555
hydrog
WATSON-CRICK
A
DG
9
A
N1
DG
9
1_555
B
DC
14
B
N3
DC
3
1_555
hydrog
WATSON-CRICK
A
DG
9
A
N2
DG
9
1_555
B
DC
14
B
O2
DC
3
1_555
hydrog
WATSON-CRICK
A
DG
9
A
O6
DG
9
1_555
B
DC
14
B
N4
DC
3
1_555
hydrog
WATSON-CRICK
A
DC
10
A
N3
DC
10
1_555
B
DG
13
B
N1
DG
2
1_555
hydrog
WATSON-CRICK
A
DC
10
A
N4
DC
10
1_555
B
DG
13
B
O6
DG
2
1_555
hydrog
WATSON-CRICK
A
DC
10
A
O2
DC
10
1_555
B
DG
13
B
N2
DG
2
1_555
hydrog
WATSON-CRICK
A
DC
11
A
N3
DC
11
1_555
B
DG
12
B
N1
DG
1
1_555
hydrog
WATSON-CRICK
A
DC
11
A
N4
DC
11
1_555
B
DG
12
B
O6
DG
1
1_555
hydrog
WATSON-CRICK
A
DC
11
A
O2
DC
11
1_555
B
DG
12
B
N2
DG
1
1_555
DNA
DAMAGED DNA, APYRIMIDINIC DNA, WATER, DNA
1A9I
PDB
1
1A9I
1A9I
PDB
2
1A9I
1
11
1A9I
1
11
1A9I
A
1
1
11
12
22
1A9I
12
22
1A9I
B
2
1
11
1
P 1