1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 Ito, Y. Yamasaki, Y. Muto, Y. Kawai, G. Nishimura, S. Miyazawa, T. Yokoyama, S. RIKEN Structural Genomics/Proteomics Initiative (RSGI) http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 1 90.00 90.00 90.00 1.000 1.000 1.000 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C10 H15 N5 O11 P2 443.201 n GUANOSINE-5'-DIPHOSPHATE RNA linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking Mg 2 24.305 MAGNESIUM ION non-polymer C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking US Biochemistry BICHAW 0033 0006-2960 36 9109 9119 10.1021/bi970296u 9230043 Regional polysterism in the GTP-bound form of the human c-Ha-Ras protein. 1997 10.2210/pdb1aa9/pdb pdb_00001aa9 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 COMPLEXED TO GUANOSINE 5'-DIPHOSPHATE 19517.062 C-HA-RAS RESIDUES 1 - 171 1 man polymer 24.305 MAGNESIUM ION 1 syn non-polymer 443.201 GUANOSINE-5'-DIPHOSPHATE 1 syn non-polymer no no MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLC VFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLV REIRQHKLRKL MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLC VFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLV REIRQHKLRKL A trt001000212.1 polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n human Homo Escherichia sample HUMAN C-HA-RAS GENE 9606 Homo sapiens HUMAN C-HA-RAS GENE 562 Escherichia coli TG1 PRGH RIKEN Structural Genomics/Proteomics Initiative RSGI database_2 pdbx_database_status pdbx_nmr_software pdbx_struct_assembly pdbx_struct_oper_list struct_conn struct_site repository Initial release Version format compliance Version format compliance Data collection Database references Derived calculations Other 1 0 1997-07-29 1 1 2008-03-24 1 2 2011-07-13 1 3 2022-02-16 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_database_status.process_site _pdbx_nmr_software.name _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id Y Y BNL 1997-01-27 REL REL MG MAGNESIUM ION GDP GUANOSINE-5'-DIPHOSPHATE MINIMIZED AVERAGE STRUCTURE 30 1 1H-1H NOESY 1H-15N HSQC 1H-13C HSQC HMQC-J 3D 15N-SEPARATED NOESY 3D 13C-SEPARATED NOESY HNHB HN(CO)HB HNCA HN(CO)CA HNCO HNCACB HCACO HCCH-COSY HCCH-TOCSY 5.5 303 K SIMULATED ANNEALING REFINEMENT FOR NMR STRUCTURE DETERMINATION. simulated annealing BRUNGER refinement X-PLOR structure solution Felix 2.3 structure solution Azara 1.0 structure solution X-PLOR 3.1 600 Bruker AMX600 400 Bruker ARX400 MG 173 2 MG MG 173 A GDP 180 3 GDP GDP 180 A MET 1 n 1 MET 1 A THR 2 n 2 THR 2 A GLU 3 n 3 GLU 3 A TYR 4 n 4 TYR 4 A LYS 5 n 5 LYS 5 A LEU 6 n 6 LEU 6 A VAL 7 n 7 VAL 7 A VAL 8 n 8 VAL 8 A VAL 9 n 9 VAL 9 A GLY 10 n 10 GLY 10 A ALA 11 n 11 ALA 11 A GLY 12 n 12 GLY 12 A GLY 13 n 13 GLY 13 A VAL 14 n 14 VAL 14 A GLY 15 n 15 GLY 15 A LYS 16 n 16 LYS 16 A SER 17 n 17 SER 17 A ALA 18 n 18 ALA 18 A LEU 19 n 19 LEU 19 A THR 20 n 20 THR 20 A ILE 21 n 21 ILE 21 A GLN 22 n 22 GLN 22 A LEU 23 n 23 LEU 23 A ILE 24 n 24 ILE 24 A GLN 25 n 25 GLN 25 A ASN 26 n 26 ASN 26 A HIS 27 n 27 HIS 27 A PHE 28 n 28 PHE 28 A VAL 29 n 29 VAL 29 A ASP 30 n 30 ASP 30 A GLU 31 n 31 GLU 31 A TYR 32 n 32 TYR 32 A ASP 33 n 33 ASP 33 A PRO 34 n 34 PRO 34 A THR 35 n 35 THR 35 A ILE 36 n 36 ILE 36 A GLU 37 n 37 GLU 37 A ASP 38 n 38 ASP 38 A SER 39 n 39 SER 39 A TYR 40 n 40 TYR 40 A ARG 41 n 41 ARG 41 A LYS 42 n 42 LYS 42 A GLN 43 n 43 GLN 43 A VAL 44 n 44 VAL 44 A VAL 45 n 45 VAL 45 A ILE 46 n 46 ILE 46 A ASP 47 n 47 ASP 47 A GLY 48 n 48 GLY 48 A GLU 49 n 49 GLU 49 A THR 50 n 50 THR 50 A CYS 51 n 51 CYS 51 A LEU 52 n 52 LEU 52 A LEU 53 n 53 LEU 53 A ASP 54 n 54 ASP 54 A ILE 55 n 55 ILE 55 A LEU 56 n 56 LEU 56 A ASP 57 n 57 ASP 57 A THR 58 n 58 THR 58 A ALA 59 n 59 ALA 59 A GLY 60 n 60 GLY 60 A GLN 61 n 61 GLN 61 A GLU 62 n 62 GLU 62 A GLU 63 n 63 GLU 63 A TYR 64 n 64 TYR 64 A SER 65 n 65 SER 65 A ALA 66 n 66 ALA 66 A MET 67 n 67 MET 67 A ARG 68 n 68 ARG 68 A ASP 69 n 69 ASP 69 A GLN 70 n 70 GLN 70 A TYR 71 n 71 TYR 71 A MET 72 n 72 MET 72 A ARG 73 n 73 ARG 73 A THR 74 n 74 THR 74 A GLY 75 n 75 GLY 75 A GLU 76 n 76 GLU 76 A GLY 77 n 77 GLY 77 A PHE 78 n 78 PHE 78 A LEU 79 n 79 LEU 79 A CYS 80 n 80 CYS 80 A VAL 81 n 81 VAL 81 A PHE 82 n 82 PHE 82 A ALA 83 n 83 ALA 83 A ILE 84 n 84 ILE 84 A ASN 85 n 85 ASN 85 A ASN 86 n 86 ASN 86 A THR 87 n 87 THR 87 A LYS 88 n 88 LYS 88 A SER 89 n 89 SER 89 A PHE 90 n 90 PHE 90 A GLU 91 n 91 GLU 91 A ASP 92 n 92 ASP 92 A ILE 93 n 93 ILE 93 A HIS 94 n 94 HIS 94 A GLN 95 n 95 GLN 95 A TYR 96 n 96 TYR 96 A ARG 97 n 97 ARG 97 A GLU 98 n 98 GLU 98 A GLN 99 n 99 GLN 99 A ILE 100 n 100 ILE 100 A LYS 101 n 101 LYS 101 A ARG 102 n 102 ARG 102 A VAL 103 n 103 VAL 103 A LYS 104 n 104 LYS 104 A ASP 105 n 105 ASP 105 A SER 106 n 106 SER 106 A ASP 107 n 107 ASP 107 A ASP 108 n 108 ASP 108 A VAL 109 n 109 VAL 109 A PRO 110 n 110 PRO 110 A MET 111 n 111 MET 111 A VAL 112 n 112 VAL 112 A LEU 113 n 113 LEU 113 A VAL 114 n 114 VAL 114 A GLY 115 n 115 GLY 115 A ASN 116 n 116 ASN 116 A LYS 117 n 117 LYS 117 A CYS 118 n 118 CYS 118 A ASP 119 n 119 ASP 119 A LEU 120 n 120 LEU 120 A ALA 121 n 121 ALA 121 A ALA 122 n 122 ALA 122 A ARG 123 n 123 ARG 123 A THR 124 n 124 THR 124 A VAL 125 n 125 VAL 125 A GLU 126 n 126 GLU 126 A SER 127 n 127 SER 127 A ARG 128 n 128 ARG 128 A GLN 129 n 129 GLN 129 A ALA 130 n 130 ALA 130 A GLN 131 n 131 GLN 131 A ASP 132 n 132 ASP 132 A LEU 133 n 133 LEU 133 A ALA 134 n 134 ALA 134 A ARG 135 n 135 ARG 135 A SER 136 n 136 SER 136 A TYR 137 n 137 TYR 137 A GLY 138 n 138 GLY 138 A ILE 139 n 139 ILE 139 A PRO 140 n 140 PRO 140 A TYR 141 n 141 TYR 141 A ILE 142 n 142 ILE 142 A GLU 143 n 143 GLU 143 A THR 144 n 144 THR 144 A SER 145 n 145 SER 145 A ALA 146 n 146 ALA 146 A LYS 147 n 147 LYS 147 A THR 148 n 148 THR 148 A ARG 149 n 149 ARG 149 A GLN 150 n 150 GLN 150 A GLY 151 n 151 GLY 151 A VAL 152 n 152 VAL 152 A GLU 153 n 153 GLU 153 A ASP 154 n 154 ASP 154 A ALA 155 n 155 ALA 155 A PHE 156 n 156 PHE 156 A TYR 157 n 157 TYR 157 A THR 158 n 158 THR 158 A LEU 159 n 159 LEU 159 A VAL 160 n 160 VAL 160 A ARG 161 n 161 ARG 161 A GLU 162 n 162 GLU 162 A ILE 163 n 163 ILE 163 A ARG 164 n 164 ARG 164 A GLN 165 n 165 GLN 165 A HIS 166 n 166 HIS 166 A LYS 167 n 167 LYS 167 A LEU 168 n 168 LEU 168 A ARG 169 n 169 ARG 169 A LYS 170 n 170 LYS 170 A LEU 171 n 171 LEU 171 A author_defined_assembly 1 monomeric A SER 17 A OG SER 17 1_555 A MG 173 B MG MG 1_555 A TYR 32 A O TYR 32 1_555 117.1 A SER 17 A OG SER 17 1_555 A MG 173 B MG MG 1_555 A ASP 33 A O ASP 33 1_555 139.4 A TYR 32 A O TYR 32 1_555 A MG 173 B MG MG 1_555 A ASP 33 A O ASP 33 1_555 80.9 A SER 17 A OG SER 17 1_555 A MG 173 B MG MG 1_555 A GDP 180 C O1B GDP 1_555 109.4 A TYR 32 A O TYR 32 1_555 A MG 173 B MG MG 1_555 A GDP 180 C O1B GDP 1_555 74.5 A ASP 33 A O ASP 33 1_555 A MG 173 B MG MG 1_555 A GDP 180 C O1B GDP 1_555 110.5 A SER 17 A OG SER 17 1_555 A MG 173 B MG MG 1_555 A GDP 180 C O2B GDP 1_555 58.7 A TYR 32 A O TYR 32 1_555 A MG 173 B MG MG 1_555 A GDP 180 C O2B GDP 1_555 89.7 A ASP 33 A O ASP 33 1_555 A MG 173 B MG MG 1_555 A GDP 180 C O2B GDP 1_555 161.9 A GDP 180 C O1B GDP 1_555 A MG 173 B MG MG 1_555 A GDP 180 C O2B GDP 1_555 51.7 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N LYS 42 A N LYS 42 A O LEU 53 A O LEU 53 A N LEU 56 A N LEU 56 A O LEU 6 A O LEU 6 A N VAL 9 A N VAL 9 A O LEU 79 A O LEU 79 A N CYS 80 A N CYS 80 A O VAL 112 A O VAL 112 A N GLY 115 A N GLY 115 A O ILE 142 A O ILE 142 1 A A O N ILE GLY 46 48 2.19 1 A ARG 41 0.293 SIDE CHAIN 1 A ARG 68 0.314 SIDE CHAIN 1 A ARG 73 0.196 SIDE CHAIN 1 A ARG 97 0.266 SIDE CHAIN 1 A ARG 102 0.123 SIDE CHAIN 1 A ARG 123 0.258 SIDE CHAIN 1 A ARG 128 0.253 SIDE CHAIN 1 A ARG 135 0.219 SIDE CHAIN 1 A ARG 149 0.302 SIDE CHAIN 1 A ARG 161 0.316 SIDE CHAIN 1 A ARG 164 0.313 SIDE CHAIN 1 A ARG 169 0.292 SIDE CHAIN 1 A LYS 5 -48.69 93.13 1 A ALA 18 -29.39 -42.38 1 A ILE 24 -104.09 -80.32 1 A PRO 34 -79.70 42.38 1 A THR 35 -147.92 -38.18 1 A ILE 36 -49.13 177.86 1 A GLU 37 -171.05 123.37 1 A LYS 42 176.89 136.47 1 A VAL 44 -128.00 -163.31 1 A ASP 47 -30.03 74.71 1 A GLU 49 -110.74 -133.18 1 A THR 58 67.38 137.28 1 A ALA 59 -109.97 -165.59 1 A GLN 61 44.06 24.74 1 A GLU 62 -143.12 -97.72 1 A GLU 63 -163.92 -57.69 1 A TYR 64 -146.45 -106.52 1 A ARG 68 -90.06 56.19 1 A LYS 88 -39.57 -75.56 1 A TYR 96 -63.48 -72.17 1 A ILE 100 -54.16 -74.55 1 A LYS 101 -37.44 -28.15 1 A LYS 104 -53.34 -91.82 1 A ASP 105 -162.37 -51.88 1 A SER 106 -128.60 -163.88 1 A ASP 108 -145.27 45.30 1 A ASN 116 -59.28 -134.03 1 A LYS 117 -25.63 70.30 1 A ASP 119 -42.76 -77.79 1 A LEU 120 -52.84 -173.94 1 A ALA 121 -88.96 -107.83 1 A ALA 122 46.62 -173.75 1 A ARG 123 146.43 74.34 1 A THR 144 -122.83 -157.87 1 A SER 145 -161.97 110.07 1 A ARG 149 42.55 28.21 1 A VAL 152 -39.30 -35.71 1 A ILE 163 -77.50 -74.13 1 A LEU 168 -100.70 -61.31 1 A LYS 170 -21.34 -73.64 model building X-PLOR 3.1 refinement X-PLOR 3.1 phasing X-PLOR 3.1 HUMAN C-HA-RAS(1-171)(DOT)GDP, NMR, MINIMIZED AVERAGE STRUCTURE 1 Y N 2 N N 3 N N A LYS 16 A LYS 16 HELX_P A ILE 24 A ILE 24 1 H1 9 A ASP 69 A ASP 69 HELX_P A ARG 73 A ARG 73 1 H2 5 A GLU 91 A GLU 91 HELX_P A LYS 104 A LYS 104 1 H3 14 A GLU 126 A GLU 126 HELX_P A TYR 137 A TYR 137 1 H4 12 A VAL 152 A VAL 152 HELX_P A GLN 165 A GLN 165 1 H5 14 metalc 2.638 A SER 17 A OG SER 17 1_555 A MG 173 B MG MG 1_555 metalc 3.102 A TYR 32 A O TYR 32 1_555 A MG 173 B MG MG 1_555 metalc 2.436 A ASP 33 A O ASP 33 1_555 A MG 173 B MG MG 1_555 metalc 2.803 A MG 173 B MG MG 1_555 A GDP 180 C O1B GDP 1_555 metalc 2.900 A MG 173 B MG MG 1_555 A GDP 180 C O2B GDP 1_555 PROTO-ONCOGENE RAS, ONCOGENE PROTEIN, GTP-BINDING PROTEIN, PROTO-ONCOGENE, RIKEN Structural Genomics/Proteomics Initiative, RSGI, Structural Genomics RASH_HUMAN UNP 1 1 P01112 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLC VFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLV REIRQHKLRKLNPPDESGPGCMSCKCVLS 1 171 1AA9 1 171 P01112 A 1 1 171 6 anti-parallel parallel parallel parallel parallel A SER 39 A SER 39 A ILE 46 A ILE 46 A GLU 49 A GLU 49 A ASP 57 A ASP 57 A THR 2 A THR 2 A VAL 9 A VAL 9 A GLY 77 A GLY 77 A ILE 84 A ILE 84 A PRO 110 A PRO 110 A LYS 117 A LYS 117 A PRO 140 A PRO 140 A THR 144 A THR 144 BINDING SITE FOR RESIDUE MG A 173 A MG 173 Software 4 BINDING SITE FOR RESIDUE GDP A 180 A GDP 180 Software 13 A SER 17 A SER 17 4 1_555 A TYR 32 A TYR 32 4 1_555 A ASP 33 A ASP 33 4 1_555 A GDP 180 C GDP 4 1_555 A GLY 12 A GLY 12 13 1_555 A GLY 13 A GLY 13 13 1_555 A GLY 15 A GLY 15 13 1_555 A LYS 16 A LYS 16 13 1_555 A SER 17 A SER 17 13 1_555 A PHE 28 A PHE 28 13 1_555 A ASP 30 A ASP 30 13 1_555 A TYR 32 A TYR 32 13 1_555 A LYS 117 A LYS 117 13 1_555 A SER 145 A SER 145 13 1_555 A ALA 146 A ALA 146 13 1_555 A LYS 147 A LYS 147 13 1_555 A MG 173 B MG 13 1_555 1 P 1