1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Ito, Y.
Yamasaki, Y.
Muto, Y.
Kawai, G.
Nishimura, S.
Miyazawa, T.
Yokoyama, S.
RIKEN Structural Genomics/Proteomics Initiative (RSGI)
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
1
90.00
90.00
90.00
1.000
1.000
1.000
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C10 H15 N5 O11 P2
443.201
n
GUANOSINE-5'-DIPHOSPHATE
RNA linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
Mg 2
24.305
MAGNESIUM ION
non-polymer
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
US
Biochemistry
BICHAW
0033
0006-2960
36
9109
9119
10.1021/bi970296u
9230043
Regional polysterism in the GTP-bound form of the human c-Ha-Ras protein.
1997
10.2210/pdb1aa9/pdb
pdb_00001aa9
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
COMPLEXED TO GUANOSINE 5'-DIPHOSPHATE
19517.062
C-HA-RAS
RESIDUES 1 - 171
1
man
polymer
24.305
MAGNESIUM ION
1
syn
non-polymer
443.201
GUANOSINE-5'-DIPHOSPHATE
1
syn
non-polymer
no
no
MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLC
VFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLV
REIRQHKLRKL
MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLC
VFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLV
REIRQHKLRKL
A
trt001000212.1
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
human
Homo
Escherichia
sample
HUMAN C-HA-RAS GENE
9606
Homo sapiens
HUMAN C-HA-RAS GENE
562
Escherichia coli
TG1
PRGH
RIKEN Structural Genomics/Proteomics Initiative
RSGI
database_2
pdbx_database_status
pdbx_nmr_software
pdbx_struct_assembly
pdbx_struct_oper_list
struct_conn
struct_site
repository
Initial release
Version format compliance
Version format compliance
Data collection
Database references
Derived calculations
Other
1
0
1997-07-29
1
1
2008-03-24
1
2
2011-07-13
1
3
2022-02-16
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_database_status.process_site
_pdbx_nmr_software.name
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
Y
Y
BNL
1997-01-27
REL
REL
MG
MAGNESIUM ION
GDP
GUANOSINE-5'-DIPHOSPHATE
MINIMIZED AVERAGE STRUCTURE
30
1
1H-1H NOESY
1H-15N HSQC
1H-13C HSQC
HMQC-J
3D 15N-SEPARATED NOESY
3D 13C-SEPARATED NOESY
HNHB
HN(CO)HB
HNCA
HN(CO)CA
HNCO
HNCACB
HCACO
HCCH-COSY
HCCH-TOCSY
5.5
303
K
SIMULATED ANNEALING REFINEMENT FOR NMR STRUCTURE DETERMINATION.
simulated annealing
BRUNGER
refinement
X-PLOR
structure solution
Felix
2.3
structure solution
Azara
1.0
structure solution
X-PLOR
3.1
600
Bruker
AMX600
400
Bruker
ARX400
MG
173
2
MG
MG
173
A
GDP
180
3
GDP
GDP
180
A
MET
1
n
1
MET
1
A
THR
2
n
2
THR
2
A
GLU
3
n
3
GLU
3
A
TYR
4
n
4
TYR
4
A
LYS
5
n
5
LYS
5
A
LEU
6
n
6
LEU
6
A
VAL
7
n
7
VAL
7
A
VAL
8
n
8
VAL
8
A
VAL
9
n
9
VAL
9
A
GLY
10
n
10
GLY
10
A
ALA
11
n
11
ALA
11
A
GLY
12
n
12
GLY
12
A
GLY
13
n
13
GLY
13
A
VAL
14
n
14
VAL
14
A
GLY
15
n
15
GLY
15
A
LYS
16
n
16
LYS
16
A
SER
17
n
17
SER
17
A
ALA
18
n
18
ALA
18
A
LEU
19
n
19
LEU
19
A
THR
20
n
20
THR
20
A
ILE
21
n
21
ILE
21
A
GLN
22
n
22
GLN
22
A
LEU
23
n
23
LEU
23
A
ILE
24
n
24
ILE
24
A
GLN
25
n
25
GLN
25
A
ASN
26
n
26
ASN
26
A
HIS
27
n
27
HIS
27
A
PHE
28
n
28
PHE
28
A
VAL
29
n
29
VAL
29
A
ASP
30
n
30
ASP
30
A
GLU
31
n
31
GLU
31
A
TYR
32
n
32
TYR
32
A
ASP
33
n
33
ASP
33
A
PRO
34
n
34
PRO
34
A
THR
35
n
35
THR
35
A
ILE
36
n
36
ILE
36
A
GLU
37
n
37
GLU
37
A
ASP
38
n
38
ASP
38
A
SER
39
n
39
SER
39
A
TYR
40
n
40
TYR
40
A
ARG
41
n
41
ARG
41
A
LYS
42
n
42
LYS
42
A
GLN
43
n
43
GLN
43
A
VAL
44
n
44
VAL
44
A
VAL
45
n
45
VAL
45
A
ILE
46
n
46
ILE
46
A
ASP
47
n
47
ASP
47
A
GLY
48
n
48
GLY
48
A
GLU
49
n
49
GLU
49
A
THR
50
n
50
THR
50
A
CYS
51
n
51
CYS
51
A
LEU
52
n
52
LEU
52
A
LEU
53
n
53
LEU
53
A
ASP
54
n
54
ASP
54
A
ILE
55
n
55
ILE
55
A
LEU
56
n
56
LEU
56
A
ASP
57
n
57
ASP
57
A
THR
58
n
58
THR
58
A
ALA
59
n
59
ALA
59
A
GLY
60
n
60
GLY
60
A
GLN
61
n
61
GLN
61
A
GLU
62
n
62
GLU
62
A
GLU
63
n
63
GLU
63
A
TYR
64
n
64
TYR
64
A
SER
65
n
65
SER
65
A
ALA
66
n
66
ALA
66
A
MET
67
n
67
MET
67
A
ARG
68
n
68
ARG
68
A
ASP
69
n
69
ASP
69
A
GLN
70
n
70
GLN
70
A
TYR
71
n
71
TYR
71
A
MET
72
n
72
MET
72
A
ARG
73
n
73
ARG
73
A
THR
74
n
74
THR
74
A
GLY
75
n
75
GLY
75
A
GLU
76
n
76
GLU
76
A
GLY
77
n
77
GLY
77
A
PHE
78
n
78
PHE
78
A
LEU
79
n
79
LEU
79
A
CYS
80
n
80
CYS
80
A
VAL
81
n
81
VAL
81
A
PHE
82
n
82
PHE
82
A
ALA
83
n
83
ALA
83
A
ILE
84
n
84
ILE
84
A
ASN
85
n
85
ASN
85
A
ASN
86
n
86
ASN
86
A
THR
87
n
87
THR
87
A
LYS
88
n
88
LYS
88
A
SER
89
n
89
SER
89
A
PHE
90
n
90
PHE
90
A
GLU
91
n
91
GLU
91
A
ASP
92
n
92
ASP
92
A
ILE
93
n
93
ILE
93
A
HIS
94
n
94
HIS
94
A
GLN
95
n
95
GLN
95
A
TYR
96
n
96
TYR
96
A
ARG
97
n
97
ARG
97
A
GLU
98
n
98
GLU
98
A
GLN
99
n
99
GLN
99
A
ILE
100
n
100
ILE
100
A
LYS
101
n
101
LYS
101
A
ARG
102
n
102
ARG
102
A
VAL
103
n
103
VAL
103
A
LYS
104
n
104
LYS
104
A
ASP
105
n
105
ASP
105
A
SER
106
n
106
SER
106
A
ASP
107
n
107
ASP
107
A
ASP
108
n
108
ASP
108
A
VAL
109
n
109
VAL
109
A
PRO
110
n
110
PRO
110
A
MET
111
n
111
MET
111
A
VAL
112
n
112
VAL
112
A
LEU
113
n
113
LEU
113
A
VAL
114
n
114
VAL
114
A
GLY
115
n
115
GLY
115
A
ASN
116
n
116
ASN
116
A
LYS
117
n
117
LYS
117
A
CYS
118
n
118
CYS
118
A
ASP
119
n
119
ASP
119
A
LEU
120
n
120
LEU
120
A
ALA
121
n
121
ALA
121
A
ALA
122
n
122
ALA
122
A
ARG
123
n
123
ARG
123
A
THR
124
n
124
THR
124
A
VAL
125
n
125
VAL
125
A
GLU
126
n
126
GLU
126
A
SER
127
n
127
SER
127
A
ARG
128
n
128
ARG
128
A
GLN
129
n
129
GLN
129
A
ALA
130
n
130
ALA
130
A
GLN
131
n
131
GLN
131
A
ASP
132
n
132
ASP
132
A
LEU
133
n
133
LEU
133
A
ALA
134
n
134
ALA
134
A
ARG
135
n
135
ARG
135
A
SER
136
n
136
SER
136
A
TYR
137
n
137
TYR
137
A
GLY
138
n
138
GLY
138
A
ILE
139
n
139
ILE
139
A
PRO
140
n
140
PRO
140
A
TYR
141
n
141
TYR
141
A
ILE
142
n
142
ILE
142
A
GLU
143
n
143
GLU
143
A
THR
144
n
144
THR
144
A
SER
145
n
145
SER
145
A
ALA
146
n
146
ALA
146
A
LYS
147
n
147
LYS
147
A
THR
148
n
148
THR
148
A
ARG
149
n
149
ARG
149
A
GLN
150
n
150
GLN
150
A
GLY
151
n
151
GLY
151
A
VAL
152
n
152
VAL
152
A
GLU
153
n
153
GLU
153
A
ASP
154
n
154
ASP
154
A
ALA
155
n
155
ALA
155
A
PHE
156
n
156
PHE
156
A
TYR
157
n
157
TYR
157
A
THR
158
n
158
THR
158
A
LEU
159
n
159
LEU
159
A
VAL
160
n
160
VAL
160
A
ARG
161
n
161
ARG
161
A
GLU
162
n
162
GLU
162
A
ILE
163
n
163
ILE
163
A
ARG
164
n
164
ARG
164
A
GLN
165
n
165
GLN
165
A
HIS
166
n
166
HIS
166
A
LYS
167
n
167
LYS
167
A
LEU
168
n
168
LEU
168
A
ARG
169
n
169
ARG
169
A
LYS
170
n
170
LYS
170
A
LEU
171
n
171
LEU
171
A
author_defined_assembly
1
monomeric
A
SER
17
A
OG
SER
17
1_555
A
MG
173
B
MG
MG
1_555
A
TYR
32
A
O
TYR
32
1_555
117.1
A
SER
17
A
OG
SER
17
1_555
A
MG
173
B
MG
MG
1_555
A
ASP
33
A
O
ASP
33
1_555
139.4
A
TYR
32
A
O
TYR
32
1_555
A
MG
173
B
MG
MG
1_555
A
ASP
33
A
O
ASP
33
1_555
80.9
A
SER
17
A
OG
SER
17
1_555
A
MG
173
B
MG
MG
1_555
A
GDP
180
C
O1B
GDP
1_555
109.4
A
TYR
32
A
O
TYR
32
1_555
A
MG
173
B
MG
MG
1_555
A
GDP
180
C
O1B
GDP
1_555
74.5
A
ASP
33
A
O
ASP
33
1_555
A
MG
173
B
MG
MG
1_555
A
GDP
180
C
O1B
GDP
1_555
110.5
A
SER
17
A
OG
SER
17
1_555
A
MG
173
B
MG
MG
1_555
A
GDP
180
C
O2B
GDP
1_555
58.7
A
TYR
32
A
O
TYR
32
1_555
A
MG
173
B
MG
MG
1_555
A
GDP
180
C
O2B
GDP
1_555
89.7
A
ASP
33
A
O
ASP
33
1_555
A
MG
173
B
MG
MG
1_555
A
GDP
180
C
O2B
GDP
1_555
161.9
A
GDP
180
C
O1B
GDP
1_555
A
MG
173
B
MG
MG
1_555
A
GDP
180
C
O2B
GDP
1_555
51.7
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
LYS
42
A
N
LYS
42
A
O
LEU
53
A
O
LEU
53
A
N
LEU
56
A
N
LEU
56
A
O
LEU
6
A
O
LEU
6
A
N
VAL
9
A
N
VAL
9
A
O
LEU
79
A
O
LEU
79
A
N
CYS
80
A
N
CYS
80
A
O
VAL
112
A
O
VAL
112
A
N
GLY
115
A
N
GLY
115
A
O
ILE
142
A
O
ILE
142
1
A
A
O
N
ILE
GLY
46
48
2.19
1
A
ARG
41
0.293
SIDE CHAIN
1
A
ARG
68
0.314
SIDE CHAIN
1
A
ARG
73
0.196
SIDE CHAIN
1
A
ARG
97
0.266
SIDE CHAIN
1
A
ARG
102
0.123
SIDE CHAIN
1
A
ARG
123
0.258
SIDE CHAIN
1
A
ARG
128
0.253
SIDE CHAIN
1
A
ARG
135
0.219
SIDE CHAIN
1
A
ARG
149
0.302
SIDE CHAIN
1
A
ARG
161
0.316
SIDE CHAIN
1
A
ARG
164
0.313
SIDE CHAIN
1
A
ARG
169
0.292
SIDE CHAIN
1
A
LYS
5
-48.69
93.13
1
A
ALA
18
-29.39
-42.38
1
A
ILE
24
-104.09
-80.32
1
A
PRO
34
-79.70
42.38
1
A
THR
35
-147.92
-38.18
1
A
ILE
36
-49.13
177.86
1
A
GLU
37
-171.05
123.37
1
A
LYS
42
176.89
136.47
1
A
VAL
44
-128.00
-163.31
1
A
ASP
47
-30.03
74.71
1
A
GLU
49
-110.74
-133.18
1
A
THR
58
67.38
137.28
1
A
ALA
59
-109.97
-165.59
1
A
GLN
61
44.06
24.74
1
A
GLU
62
-143.12
-97.72
1
A
GLU
63
-163.92
-57.69
1
A
TYR
64
-146.45
-106.52
1
A
ARG
68
-90.06
56.19
1
A
LYS
88
-39.57
-75.56
1
A
TYR
96
-63.48
-72.17
1
A
ILE
100
-54.16
-74.55
1
A
LYS
101
-37.44
-28.15
1
A
LYS
104
-53.34
-91.82
1
A
ASP
105
-162.37
-51.88
1
A
SER
106
-128.60
-163.88
1
A
ASP
108
-145.27
45.30
1
A
ASN
116
-59.28
-134.03
1
A
LYS
117
-25.63
70.30
1
A
ASP
119
-42.76
-77.79
1
A
LEU
120
-52.84
-173.94
1
A
ALA
121
-88.96
-107.83
1
A
ALA
122
46.62
-173.75
1
A
ARG
123
146.43
74.34
1
A
THR
144
-122.83
-157.87
1
A
SER
145
-161.97
110.07
1
A
ARG
149
42.55
28.21
1
A
VAL
152
-39.30
-35.71
1
A
ILE
163
-77.50
-74.13
1
A
LEU
168
-100.70
-61.31
1
A
LYS
170
-21.34
-73.64
model building
X-PLOR
3.1
refinement
X-PLOR
3.1
phasing
X-PLOR
3.1
HUMAN C-HA-RAS(1-171)(DOT)GDP, NMR, MINIMIZED AVERAGE STRUCTURE
1
Y
N
2
N
N
3
N
N
A
LYS
16
A
LYS
16
HELX_P
A
ILE
24
A
ILE
24
1
H1
9
A
ASP
69
A
ASP
69
HELX_P
A
ARG
73
A
ARG
73
1
H2
5
A
GLU
91
A
GLU
91
HELX_P
A
LYS
104
A
LYS
104
1
H3
14
A
GLU
126
A
GLU
126
HELX_P
A
TYR
137
A
TYR
137
1
H4
12
A
VAL
152
A
VAL
152
HELX_P
A
GLN
165
A
GLN
165
1
H5
14
metalc
2.638
A
SER
17
A
OG
SER
17
1_555
A
MG
173
B
MG
MG
1_555
metalc
3.102
A
TYR
32
A
O
TYR
32
1_555
A
MG
173
B
MG
MG
1_555
metalc
2.436
A
ASP
33
A
O
ASP
33
1_555
A
MG
173
B
MG
MG
1_555
metalc
2.803
A
MG
173
B
MG
MG
1_555
A
GDP
180
C
O1B
GDP
1_555
metalc
2.900
A
MG
173
B
MG
MG
1_555
A
GDP
180
C
O2B
GDP
1_555
PROTO-ONCOGENE
RAS, ONCOGENE PROTEIN, GTP-BINDING PROTEIN, PROTO-ONCOGENE, RIKEN Structural Genomics/Proteomics Initiative, RSGI, Structural Genomics
RASH_HUMAN
UNP
1
1
P01112
MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLC
VFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLV
REIRQHKLRKLNPPDESGPGCMSCKCVLS
1
171
1AA9
1
171
P01112
A
1
1
171
6
anti-parallel
parallel
parallel
parallel
parallel
A
SER
39
A
SER
39
A
ILE
46
A
ILE
46
A
GLU
49
A
GLU
49
A
ASP
57
A
ASP
57
A
THR
2
A
THR
2
A
VAL
9
A
VAL
9
A
GLY
77
A
GLY
77
A
ILE
84
A
ILE
84
A
PRO
110
A
PRO
110
A
LYS
117
A
LYS
117
A
PRO
140
A
PRO
140
A
THR
144
A
THR
144
BINDING SITE FOR RESIDUE MG A 173
A
MG
173
Software
4
BINDING SITE FOR RESIDUE GDP A 180
A
GDP
180
Software
13
A
SER
17
A
SER
17
4
1_555
A
TYR
32
A
TYR
32
4
1_555
A
ASP
33
A
ASP
33
4
1_555
A
GDP
180
C
GDP
4
1_555
A
GLY
12
A
GLY
12
13
1_555
A
GLY
13
A
GLY
13
13
1_555
A
GLY
15
A
GLY
15
13
1_555
A
LYS
16
A
LYS
16
13
1_555
A
SER
17
A
SER
17
13
1_555
A
PHE
28
A
PHE
28
13
1_555
A
ASP
30
A
ASP
30
13
1_555
A
TYR
32
A
TYR
32
13
1_555
A
LYS
117
A
LYS
117
13
1_555
A
SER
145
A
SER
145
13
1_555
A
ALA
146
A
ALA
146
13
1_555
A
LYS
147
A
LYS
147
13
1_555
A
MG
173
B
MG
13
1_555
1
P 1