1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Summers, M.F.
Henderson, L.E.
Chance, M.R.
Bess Junior, J.W.
South, T.L.
Blake, P.R.
Sagi, I.
Perez-Alvarado, G.
Sowder, R.C.
Hare, D.R.
Arthur, L.O.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
1
90.00
90.00
90.00
1.000
1.000
1.000
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
Zn 2
65.409
ZINC ION
non-polymer
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
N
N
89
S
C
N
90
N
C
N
91
N
O
N
92
N
C
N
93
N
C
N
94
N
C
N
95
N
O
N
96
N
N
N
97
N
O
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
N
N
109
S
C
N
110
N
C
N
111
N
O
N
112
N
C
N
113
N
C
N
114
N
C
N
115
N
O
N
116
N
O
N
117
N
O
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
N
N
128
N
C
N
129
N
C
N
130
N
O
N
131
N
O
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
N
N
138
S
C
N
139
N
C
N
140
N
O
N
141
N
C
Y
142
N
C
Y
143
N
N
Y
144
N
C
Y
145
N
C
Y
146
N
N
N
147
N
O
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
N
N
159
S
C
N
160
N
C
N
161
N
O
N
162
S
C
N
163
N
C
N
164
N
C
N
165
N
C
N
166
N
O
N
167
N
H
N
168
N
H
N
169
N
H
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
N
N
181
S
C
N
182
N
C
N
183
N
O
N
184
N
C
N
185
N
C
N
186
N
C
N
187
N
C
N
188
N
N
N
189
N
O
N
190
N
H
N
191
N
H
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
N
N
206
S
C
N
207
N
C
N
208
N
O
N
209
N
C
N
210
N
C
N
211
N
S
N
212
N
C
N
213
N
O
N
214
N
H
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
N
N
226
S
C
N
227
N
C
N
228
N
O
N
229
N
C
Y
230
N
C
Y
231
N
C
Y
232
N
C
Y
233
N
C
Y
234
N
C
Y
235
N
C
N
236
N
O
N
237
N
H
N
238
N
H
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
N
N
249
S
C
N
250
N
C
N
251
N
O
N
252
N
C
N
253
N
C
N
254
N
C
N
255
N
O
N
256
N
H
N
257
N
H
N
258
N
H
N
259
N
H
N
260
N
H
N
261
N
H
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
N
N
266
S
C
N
267
N
C
N
268
N
O
N
269
R
C
N
270
N
O
N
271
N
C
N
272
N
O
N
273
N
H
N
274
N
H
N
275
N
H
N
276
N
H
N
277
N
H
N
278
N
H
N
279
N
H
N
280
N
H
N
281
N
H
N
282
N
N
N
283
S
C
N
284
N
C
N
285
N
O
N
286
N
C
Y
287
N
C
Y
288
N
C
Y
289
N
C
Y
290
N
N
Y
291
N
C
Y
292
N
C
Y
293
N
C
Y
294
N
C
Y
295
N
C
N
296
N
O
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
H
N
305
N
H
N
306
N
H
N
307
N
H
N
308
N
H
N
309
N
ZN
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
doub
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
doub
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
doub
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
doub
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
doub
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
Y
140
N
sing
Y
141
N
doub
Y
142
N
doub
N
143
N
sing
Y
144
N
sing
N
145
N
sing
Y
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
doub
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
doub
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
doub
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
doub
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
Y
225
N
doub
Y
226
N
sing
Y
227
N
sing
N
228
N
sing
Y
229
N
doub
N
230
N
sing
Y
231
N
doub
N
232
N
sing
Y
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
doub
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
doub
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
doub
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
Y
281
N
doub
Y
282
N
sing
Y
283
N
sing
N
284
N
sing
Y
285
N
doub
Y
286
N
sing
Y
287
N
sing
N
288
N
sing
Y
289
N
sing
Y
290
N
doub
N
291
N
sing
Y
292
N
doub
N
293
N
sing
Y
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
US
Protein Sci.
PRCIEI
0795
0961-8368
1
563
574
1304355
Nucleocapsid zinc fingers detected in retroviruses: EXAFS studies of intact viruses and the solution-state structure of the nucleocapsid protein from HIV-1.
1992
10.2210/pdb1aaf/pdb
pdb_00001aaf
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
6468.604
HIV-1 NUCLEOCAPSID PROTEIN
1
man
polymer
65.409
ZINC ION
2
syn
non-polymer
no
no
MQRGNFRNQRKIIKCFNCGKEGHIAKNCRAPRKRGCWKCGKEGHQMKDCTERQAN
MQRGNFRNQRKIIKCFNCGKEGHIAKNCRAPRKRGCWKCGKEGHQMKDCTERQAN
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Lentivirus
M/B_MN
Escherichia
sample
11696
Human immunodeficiency virus 1
562
Escherichia coli
chem_comp_atom
chem_comp_bond
database_2
pdbx_database_status
struct_conn
struct_site
repository
Initial release
Version format compliance
Version format compliance
Data collection
Database references
Derived calculations
Other
1
0
1994-01-31
1
1
2008-03-24
1
2
2011-07-13
1
3
2024-04-10
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_database_status.process_site
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
Y
BNL
1992-04-06
REL
ZN
ZINC ION
20
ZN
56
2
ZN
ZN
56
A
ZN
57
2
ZN
ZN
57
A
MET
1
n
1
MET
1
A
GLN
2
n
2
GLN
2
A
ARG
3
n
3
ARG
3
A
GLY
4
n
4
GLY
4
A
ASN
5
n
5
ASN
5
A
PHE
6
n
6
PHE
6
A
ARG
7
n
7
ARG
7
A
ASN
8
n
8
ASN
8
A
GLN
9
n
9
GLN
9
A
ARG
10
n
10
ARG
10
A
LYS
11
n
11
LYS
11
A
ILE
12
n
12
ILE
12
A
ILE
13
n
13
ILE
13
A
LYS
14
n
14
LYS
14
A
CYS
15
n
15
CYS
15
A
PHE
16
n
16
PHE
16
A
ASN
17
n
17
ASN
17
A
CYS
18
n
18
CYS
18
A
GLY
19
n
19
GLY
19
A
LYS
20
n
20
LYS
20
A
GLU
21
n
21
GLU
21
A
GLY
22
n
22
GLY
22
A
HIS
23
n
23
HIS
23
A
ILE
24
n
24
ILE
24
A
ALA
25
n
25
ALA
25
A
LYS
26
n
26
LYS
26
A
ASN
27
n
27
ASN
27
A
CYS
28
n
28
CYS
28
A
ARG
29
n
29
ARG
29
A
ALA
30
n
30
ALA
30
A
PRO
31
n
31
PRO
31
A
ARG
32
n
32
ARG
32
A
LYS
33
n
33
LYS
33
A
ARG
34
n
34
ARG
34
A
GLY
35
n
35
GLY
35
A
CYS
36
n
36
CYS
36
A
TRP
37
n
37
TRP
37
A
LYS
38
n
38
LYS
38
A
CYS
39
n
39
CYS
39
A
GLY
40
n
40
GLY
40
A
LYS
41
n
41
LYS
41
A
GLU
42
n
42
GLU
42
A
GLY
43
n
43
GLY
43
A
HIS
44
n
44
HIS
44
A
GLN
45
n
45
GLN
45
A
MET
46
n
46
MET
46
A
LYS
47
n
47
LYS
47
A
ASP
48
n
48
ASP
48
A
CYS
49
n
49
CYS
49
A
THR
50
n
50
THR
50
A
GLU
51
n
51
GLU
51
A
ARG
52
n
52
ARG
52
A
GLN
53
n
53
GLN
53
A
ALA
54
n
54
ALA
54
A
ASN
55
n
55
ASN
55
A
author_defined_assembly
1
monomeric
A
CYS
15
A
SG
CYS
15
1_555
A
ZN
56
B
ZN
ZN
1_555
A
CYS
18
A
SG
CYS
18
1_555
106.7
A
CYS
15
A
SG
CYS
15
1_555
A
ZN
56
B
ZN
ZN
1_555
A
HIS
23
A
NE2
HIS
23
1_555
93.4
A
CYS
18
A
SG
CYS
18
1_555
A
ZN
56
B
ZN
ZN
1_555
A
HIS
23
A
NE2
HIS
23
1_555
94.3
A
CYS
15
A
SG
CYS
15
1_555
A
ZN
56
B
ZN
ZN
1_555
A
CYS
28
A
SG
CYS
28
1_555
115.6
A
CYS
18
A
SG
CYS
18
1_555
A
ZN
56
B
ZN
ZN
1_555
A
CYS
28
A
SG
CYS
28
1_555
124.3
A
HIS
23
A
NE2
HIS
23
1_555
A
ZN
56
B
ZN
ZN
1_555
A
CYS
28
A
SG
CYS
28
1_555
116.5
A
CYS
36
A
SG
CYS
36
1_555
A
ZN
57
C
ZN
ZN
1_555
A
CYS
39
A
SG
CYS
39
1_555
106.9
A
CYS
36
A
SG
CYS
36
1_555
A
ZN
57
C
ZN
ZN
1_555
A
HIS
44
A
NE2
HIS
44
1_555
93.7
A
CYS
39
A
SG
CYS
39
1_555
A
ZN
57
C
ZN
ZN
1_555
A
HIS
44
A
NE2
HIS
44
1_555
93.6
A
CYS
36
A
SG
CYS
36
1_555
A
ZN
57
C
ZN
ZN
1_555
A
CYS
49
A
SG
CYS
49
1_555
109.4
A
CYS
39
A
SG
CYS
39
1_555
A
ZN
57
C
ZN
ZN
1_555
A
CYS
49
A
SG
CYS
49
1_555
142.4
A
HIS
44
A
NE2
HIS
44
1_555
A
ZN
57
C
ZN
ZN
1_555
A
CYS
49
A
SG
CYS
49
1_555
93.6
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1
A
CYS
15
-11.72
2
A
HIS
44
-11.56
4
A
ARG
29
-10.08
5
A
CYS
15
-11.37
5
A
ARG
29
-10.98
8
A
THR
50
-12.19
10
A
LYS
14
13.68
11
A
CYS
36
-11.69
11
A
TRP
37
10.32
12
A
CYS
15
-11.44
12
A
THR
50
-10.41
13
A
CYS
15
-11.44
13
A
THR
50
-10.41
14
A
LYS
33
11.74
14
A
THR
50
-10.16
15
A
CYS
15
-10.90
16
A
CYS
15
-10.26
16
A
ALA
25
-10.66
16
A
CYS
36
-10.65
17
A
CYS
15
-13.06
17
A
ALA
25
-11.16
17
A
TRP
37
10.12
18
A
CYS
15
-11.19
18
A
ARG
29
-11.76
18
A
CYS
36
-11.52
19
A
CYS
15
-10.69
19
A
HIS
44
-10.42
20
A
CYS
15
-10.05
20
A
CYS
36
-10.65
20
A
TRP
37
10.36
20
A
HIS
44
-11.78
20
A
ALA
54
10.65
1
A
GLN
2
59.72
-178.01
1
A
PHE
6
178.34
151.54
1
A
ARG
7
-177.42
-33.18
1
A
ASN
8
-62.00
87.17
1
A
GLN
9
-84.72
-78.86
1
A
ARG
10
62.16
-83.36
1
A
LYS
11
62.58
93.94
1
A
ILE
12
-98.17
40.94
1
A
LYS
14
179.67
104.23
1
A
GLU
51
58.72
-84.31
1
A
ARG
52
-175.67
144.17
1
A
GLN
53
-154.95
24.60
1
A
ALA
54
61.47
-162.61
2
A
GLN
2
66.96
128.87
2
A
ARG
3
61.79
100.30
2
A
ASN
5
68.68
74.54
2
A
PHE
6
179.51
179.96
2
A
ARG
7
61.69
179.58
2
A
ASN
8
69.33
84.01
2
A
GLN
9
-145.64
-43.16
2
A
ARG
10
64.80
-66.86
2
A
LYS
11
64.20
102.87
2
A
ILE
12
-164.92
-50.89
2
A
ARG
29
-95.29
33.00
2
A
PRO
31
-80.91
-120.30
2
A
ARG
32
-175.56
98.73
2
A
ARG
34
-138.66
-79.02
2
A
GLU
51
57.66
-84.74
2
A
GLN
53
-86.44
-71.82
3
A
GLN
2
61.91
178.41
3
A
ASN
5
-173.02
109.06
3
A
GLN
9
-170.59
141.22
3
A
ILE
13
-59.73
93.58
3
A
LYS
14
-166.39
115.23
3
A
ARG
32
67.22
144.30
3
A
LYS
33
-170.28
-76.52
3
A
ARG
34
179.84
-176.01
3
A
LYS
38
-95.88
-64.90
3
A
HIS
44
174.37
-174.95
3
A
ARG
52
64.45
-167.30
3
A
GLN
53
-104.17
-84.10
3
A
ALA
54
61.51
-168.80
4
A
ASN
5
66.71
84.68
4
A
GLN
9
-103.67
-84.51
4
A
ARG
10
64.71
138.43
4
A
LYS
11
63.78
151.67
4
A
PRO
31
-80.79
-143.68
4
A
ARG
32
65.58
81.29
4
A
LYS
33
-179.48
142.24
4
A
ARG
34
64.65
178.57
4
A
GLU
42
-112.94
77.62
4
A
HIS
44
178.31
112.31
4
A
GLU
51
-170.97
-157.38
4
A
ARG
52
64.12
84.43
4
A
GLN
53
-165.18
69.11
5
A
GLN
2
-99.77
38.47
5
A
ARG
3
63.94
99.69
5
A
ARG
29
-103.26
40.42
5
A
ARG
32
60.96
-174.96
5
A
LYS
33
-175.50
-168.54
5
A
ARG
34
-62.57
85.27
5
A
TRP
37
-96.99
31.20
5
A
LYS
38
-121.76
-62.70
5
A
HIS
44
179.77
159.59
5
A
THR
50
-153.90
32.83
5
A
ARG
52
60.91
-165.73
5
A
GLN
53
-97.78
44.19
5
A
ALA
54
61.59
163.67
6
A
GLN
2
-167.04
36.44
6
A
ASN
5
66.25
143.76
6
A
PHE
6
-95.11
-72.32
6
A
GLN
9
-161.65
99.15
6
A
ARG
10
-64.10
-168.90
6
A
ILE
13
-171.23
111.63
6
A
PRO
31
-80.56
-151.64
6
A
ARG
52
-109.84
-80.92
6
A
ALA
54
-122.99
-53.01
7
A
GLN
2
61.83
73.81
7
A
ASN
8
-135.73
-81.50
7
A
GLN
9
59.94
-172.47
7
A
ARG
10
64.87
125.17
7
A
LYS
14
54.42
99.03
7
A
ARG
29
-96.09
33.53
7
A
TRP
37
-97.59
31.20
7
A
ALA
54
-139.78
-72.22
8
A
ASN
5
68.65
123.08
8
A
ARG
7
64.73
89.66
8
A
ASN
8
62.17
-177.47
8
A
GLN
9
-179.47
-78.54
8
A
ARG
10
65.87
152.50
8
A
ILE
12
64.65
71.73
8
A
LYS
33
-163.08
119.81
8
A
GLU
51
60.90
-67.94
8
A
ARG
52
58.46
170.14
8
A
GLN
53
178.92
-34.96
8
A
ALA
54
61.82
-82.69
9
A
ARG
3
65.07
122.70
9
A
ASN
5
-172.97
120.06
9
A
PHE
6
-179.35
-74.44
9
A
ARG
7
63.91
171.60
9
A
ILE
12
-109.69
-150.07
9
A
LYS
14
179.40
164.16
9
A
ARG
29
-95.79
49.97
9
A
ARG
32
-102.86
-82.52
9
A
LYS
33
177.98
-33.74
9
A
GLU
51
57.67
-87.88
9
A
ARG
52
-79.63
-76.89
9
A
GLN
53
-174.60
-51.90
9
A
ALA
54
61.53
92.52
10
A
ARG
3
-62.28
98.05
10
A
ARG
7
63.50
84.22
10
A
GLN
9
-171.74
116.47
10
A
ARG
10
-71.60
-167.06
10
A
LYS
11
-61.81
-175.07
10
A
LYS
14
53.95
167.67
10
A
PRO
31
-65.89
-162.94
10
A
ARG
32
-171.53
116.11
10
A
LYS
33
64.99
142.49
10
A
ARG
34
-178.82
-176.52
10
A
GLU
51
57.77
173.49
10
A
ARG
52
179.08
115.47
10
A
GLN
53
-98.17
37.89
11
A
GLN
2
-62.08
-87.45
11
A
ARG
3
61.85
-169.71
11
A
ASN
5
61.75
-172.81
11
A
ARG
7
-174.78
-35.65
11
A
ILE
12
-98.72
31.76
11
A
LYS
14
178.31
165.68
11
A
ARG
29
-103.79
62.11
11
A
ARG
32
178.80
138.93
11
A
LYS
33
62.60
-164.77
11
A
ARG
34
68.48
147.54
11
A
GLU
42
-108.76
45.13
11
A
GLN
45
-122.84
-165.56
11
A
GLN
53
-175.97
-82.42
11
A
ALA
54
62.47
-85.27
12
A
GLN
2
-163.14
25.03
12
A
ASN
5
-172.93
116.59
12
A
PHE
6
-176.56
100.55
12
A
GLN
9
-101.29
-165.45
12
A
ARG
10
-130.43
-81.34
12
A
LYS
11
61.43
107.59
12
A
ILE
13
-176.56
56.32
12
A
LYS
14
56.12
172.95
12
A
ARG
32
179.95
77.44
12
A
GLU
42
-98.67
33.42
12
A
HIS
44
179.89
162.33
12
A
THR
50
-96.22
31.44
12
A
GLU
51
58.02
169.82
12
A
ALA
54
-120.40
-162.50
13
A
GLN
2
-163.14
25.03
13
A
ASN
5
-172.93
116.59
13
A
PHE
6
-176.56
100.55
13
A
GLN
9
-101.29
-165.45
13
A
ARG
10
-130.43
-81.34
13
A
LYS
11
61.43
107.59
13
A
ILE
13
-176.56
56.32
13
A
LYS
14
56.12
172.95
13
A
ARG
32
179.95
77.44
13
A
GLU
42
-98.67
33.42
13
A
HIS
44
179.89
162.33
13
A
THR
50
-96.22
31.44
13
A
GLU
51
58.02
169.82
13
A
ALA
54
-120.40
-162.50
14
A
GLN
2
-158.97
-79.15
14
A
ASN
5
69.41
95.66
14
A
PHE
6
70.71
126.16
14
A
ARG
7
-62.02
97.07
14
A
GLN
9
-124.54
-86.45
14
A
LYS
11
179.29
-168.82
14
A
ASN
27
-97.64
30.63
14
A
PRO
31
-83.52
-136.38
14
A
ARG
34
56.50
-175.78
14
A
TRP
37
-98.77
34.74
14
A
GLN
45
-116.28
-168.29
14
A
ASP
48
-98.80
30.90
14
A
THR
50
-95.99
33.32
14
A
GLU
51
-61.45
-168.86
14
A
ARG
52
-158.57
33.26
14
A
ALA
54
-174.79
122.05
15
A
GLN
2
65.36
69.61
15
A
ASN
5
-108.63
-78.73
15
A
ARG
10
-66.24
-80.36
15
A
LYS
11
61.81
-169.65
15
A
ILE
12
-175.79
65.62
15
A
LYS
14
178.69
144.26
15
A
ARG
29
-100.29
66.19
15
A
LYS
33
-65.10
88.51
15
A
ARG
52
61.35
106.59
15
A
GLN
53
-135.60
-45.53
15
A
ALA
54
61.58
97.90
16
A
GLN
2
69.02
-72.29
16
A
PHE
6
175.00
-174.82
16
A
ARG
7
-179.30
138.53
16
A
ASN
8
-170.91
120.51
16
A
GLN
9
67.64
158.45
16
A
ARG
10
-169.03
29.85
16
A
PRO
31
-64.61
-170.36
16
A
ARG
32
65.94
72.43
16
A
LYS
33
-178.31
79.65
16
A
ARG
34
-175.36
143.02
16
A
LYS
38
-92.12
-70.73
16
A
HIS
44
179.37
-179.90
16
A
GLU
51
58.55
-87.96
16
A
ALA
54
61.52
-175.88
17
A
GLN
2
61.85
-166.01
17
A
ARG
3
65.52
-78.28
17
A
PHE
6
-100.84
-80.78
17
A
ARG
7
61.58
86.05
17
A
ARG
29
-102.52
68.56
17
A
ARG
32
-123.43
-163.79
17
A
HIS
44
-178.83
-176.72
17
A
ASP
48
-143.90
35.04
17
A
GLN
53
69.83
-165.96
17
A
ALA
54
61.78
159.76
18
A
GLN
2
69.42
-65.67
18
A
ARG
3
64.50
114.48
18
A
ASN
5
-173.11
84.86
18
A
ARG
7
-136.31
-81.10
18
A
ASN
8
61.33
82.47
18
A
ARG
10
-147.00
30.30
18
A
LYS
11
-163.49
22.13
18
A
ILE
13
-160.46
84.98
18
A
ARG
29
-108.34
45.04
18
A
GLU
51
-94.46
46.44
18
A
ALA
54
61.53
177.01
19
A
ASN
5
-65.47
-167.86
19
A
PHE
6
-68.86
82.18
19
A
ASN
8
69.66
141.51
19
A
GLN
9
-101.96
-167.02
19
A
ARG
10
62.72
-175.13
19
A
LYS
11
-175.42
110.01
19
A
ILE
12
-128.24
-52.14
19
A
ARG
34
-123.22
-166.68
19
A
ASP
48
-141.55
30.80
20
A
GLN
2
-157.96
38.80
20
A
ARG
7
63.43
98.43
20
A
ASN
8
-170.11
-45.27
20
A
GLN
9
69.03
-172.64
20
A
ILE
12
-157.57
-44.30
20
A
LYS
14
179.02
108.45
20
A
GLU
21
-79.29
-159.09
20
A
LYS
38
-75.47
-70.05
20
A
GLU
51
57.25
-159.29
20
A
ALA
54
-131.30
-47.03
NUCLEOCAPSID ZINC FINGERS DETECTED IN RETROVIRUSES: EXAFS STUDIES ON INTACT VIRUSES AND THE SOLUTION-STATE STRUCTURE OF THE NUCLEOCAPSID PROTEIN FROM HIV-1
1
Y
N
2
N
N
2
N
N
A
ILE
24
A
ILE
24
HELX_P
A
CYS
28
A
CYS
28
5
1
5
A
GLN
45
A
GLN
45
HELX_P
A
CYS
49
A
CYS
49
5
2
5
metalc
2.307
A
CYS
15
A
SG
CYS
15
1_555
A
ZN
56
B
ZN
ZN
1_555
metalc
2.300
A
CYS
18
A
SG
CYS
18
1_555
A
ZN
56
B
ZN
ZN
1_555
metalc
2.011
A
HIS
23
A
NE2
HIS
23
1_555
A
ZN
56
B
ZN
ZN
1_555
metalc
2.297
A
CYS
28
A
SG
CYS
28
1_555
A
ZN
56
B
ZN
ZN
1_555
metalc
2.302
A
CYS
36
A
SG
CYS
36
1_555
A
ZN
57
C
ZN
ZN
1_555
metalc
2.300
A
CYS
39
A
SG
CYS
39
1_555
A
ZN
57
C
ZN
ZN
1_555
metalc
2.010
A
HIS
44
A
NE2
HIS
44
1_555
A
ZN
57
C
ZN
ZN
1_555
metalc
2.302
A
CYS
49
A
SG
CYS
49
1_555
A
ZN
57
C
ZN
ZN
1_555
VIRAL PROTEIN
Viral protein
POL_HV1MN
UNP
1
1
P05961
GARASVLSGGELDRWEKIRLRPGGKKKYKLKHVVWASRELERFAINPGLLETSEGCRQILGQLQPSLQTGSEERKSLYNT
VATLYCVHQKIKIKDTKEALEKIEEEQNKSKKKAQQAAADTGNRGNSSQVSQNYPIVQNIQGQMVHQAISPRTLNAWVKV
VEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRLHPAHAGPIAPGQMREPRGSDIAG
TTSTLQEQIGWMTNNPPIPVGEIYKRWIILGLNKIVRMYSPSSILDIRQGPKEPFRDYVDRFYKTLRAEQASQEVKNWMT
ETLLVQNANPDCKTILKALGPAATLEEMMTACQGVGGPGHKARVLAEAMSQVTNSATIMMQRGNFRNQRKIIKCFNCGKE
GHIAKNCRAPRKRGCWKCGKEGHQMKDCTERQANFLGKIWPSCKGRPGNFPQSRTEPTAPPEESFRFGEETTTPYQKQEK
KQETIDKDLYPLASLKSLFGNDPLSQ
380
434
1AAF
1
55
P05961
A
1
1
55
BINDING SITE FOR RESIDUE ZN A 56
A
ZN
56
Software
4
BINDING SITE FOR RESIDUE ZN A 57
A
ZN
57
Software
4
A
CYS
15
A
CYS
15
4
1_555
A
CYS
18
A
CYS
18
4
1_555
A
HIS
23
A
HIS
23
4
1_555
A
CYS
28
A
CYS
28
4
1_555
A
CYS
36
A
CYS
36
4
1_555
A
CYS
39
A
CYS
39
4
1_555
A
HIS
44
A
HIS
44
4
1_555
A
CYS
49
A
CYS
49
4
1_555
1
P 1