0.031153
-0.011524
0.011736
0.000000
0.023078
0.003710
0.000000
0.000000
0.043416
0.00000
0.00000
0.00000
THERE IS AN UNUSUAL ISOPEPTIDE BOND BETWEEN THE SIDE CHAIN OF LYS B 48 FROM ONE UBIQUITIN MOIETY AND THE CARBOXYL TERMINUS GLY A 76 OF THE OTHER UBIQUITIN MOIETY.
Cook, W.J.
Jeffrey, L.C.
Carson, M.
Chen, Z.
Pickart, C.M.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
2
105.90
113.30
69.70
32.100
46.200
25.400
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
US
J.Biol.Chem.
JBCHA3
0071
0021-9258
267
16467
16471
1322903
Structure of a diubiquitin conjugate and a model for interaction with ubiquitin conjugating enzyme (E2).
1992
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
1
x-ray
1
1.0
8576.831
DI-UBIQUITIN
2
man
polymer
18.015
water
15
nat
water
no
no
MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG
MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG
A,B
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
cattle
Bos
sample
9913
Bos taurus
1.87
34.12
repository
Initial release
Version format compliance
Version format compliance
1
0
1993-10-31
1
1
2008-03-10
1
2
2011-07-13
Y
1992-04-17
REL
REL
HOH
water
THERE IS AN UNUSUAL ISOPEPTIDE BOND BETWEEN THE SIDE CHAIN OF LYS B 48 FROM ONE UBIQUITIN MOIETY AND THE CARBOXYL TERMINUS GLY A 76 OF THE OTHER UBIQUITIN MOIETY.
HOH
202
2
HOH
HOH
202
A
HOH
203
2
HOH
HOH
203
A
HOH
206
2
HOH
HOH
206
A
HOH
208
2
HOH
HOH
208
A
HOH
210
2
HOH
HOH
210
A
HOH
211
2
HOH
HOH
211
A
HOH
214
2
HOH
HOH
214
A
HOH
201
2
HOH
HOH
201
B
HOH
204
2
HOH
HOH
204
B
HOH
205
2
HOH
HOH
205
B
HOH
207
2
HOH
HOH
207
B
HOH
209
2
HOH
HOH
209
B
HOH
212
2
HOH
HOH
212
B
HOH
213
2
HOH
HOH
213
B
HOH
215
2
HOH
HOH
215
B
MET
1
n
1
MET
1
A
GLN
2
n
2
GLN
2
A
ILE
3
n
3
ILE
3
A
PHE
4
n
4
PHE
4
A
VAL
5
n
5
VAL
5
A
LYS
6
n
6
LYS
6
A
THR
7
n
7
THR
7
A
LEU
8
n
8
LEU
8
A
THR
9
n
9
THR
9
A
GLY
10
n
10
GLY
10
A
LYS
11
n
11
LYS
11
A
THR
12
n
12
THR
12
A
ILE
13
n
13
ILE
13
A
THR
14
n
14
THR
14
A
LEU
15
n
15
LEU
15
A
GLU
16
n
16
GLU
16
A
VAL
17
n
17
VAL
17
A
GLU
18
n
18
GLU
18
A
PRO
19
n
19
PRO
19
A
SER
20
n
20
SER
20
A
ASP
21
n
21
ASP
21
A
THR
22
n
22
THR
22
A
ILE
23
n
23
ILE
23
A
GLU
24
n
24
GLU
24
A
ASN
25
n
25
ASN
25
A
VAL
26
n
26
VAL
26
A
LYS
27
n
27
LYS
27
A
ALA
28
n
28
ALA
28
A
LYS
29
n
29
LYS
29
A
ILE
30
n
30
ILE
30
A
GLN
31
n
31
GLN
31
A
ASP
32
n
32
ASP
32
A
LYS
33
n
33
LYS
33
A
GLU
34
n
34
GLU
34
A
GLY
35
n
35
GLY
35
A
ILE
36
n
36
ILE
36
A
PRO
37
n
37
PRO
37
A
PRO
38
n
38
PRO
38
A
ASP
39
n
39
ASP
39
A
GLN
40
n
40
GLN
40
A
GLN
41
n
41
GLN
41
A
ARG
42
n
42
ARG
42
A
LEU
43
n
43
LEU
43
A
ILE
44
n
44
ILE
44
A
PHE
45
n
45
PHE
45
A
ALA
46
n
46
ALA
46
A
GLY
47
n
47
GLY
47
A
LYS
48
n
48
LYS
48
A
GLN
49
n
49
GLN
49
A
LEU
50
n
50
LEU
50
A
GLU
51
n
51
GLU
51
A
ASP
52
n
52
ASP
52
A
GLY
53
n
53
GLY
53
A
ARG
54
n
54
ARG
54
A
THR
55
n
55
THR
55
A
LEU
56
n
56
LEU
56
A
SER
57
n
57
SER
57
A
ASP
58
n
58
ASP
58
A
TYR
59
n
59
TYR
59
A
ASN
60
n
60
ASN
60
A
ILE
61
n
61
ILE
61
A
GLN
62
n
62
GLN
62
A
LYS
63
n
63
LYS
63
A
GLU
64
n
64
GLU
64
A
SER
65
n
65
SER
65
A
THR
66
n
66
THR
66
A
LEU
67
n
67
LEU
67
A
HIS
68
n
68
HIS
68
A
LEU
69
n
69
LEU
69
A
VAL
70
n
70
VAL
70
A
LEU
71
n
71
LEU
71
A
ARG
72
n
72
ARG
72
A
LEU
73
n
73
LEU
73
A
ARG
74
n
74
ARG
74
A
GLY
75
n
75
GLY
75
A
GLY
76
n
76
GLY
76
A
MET
1
n
1
MET
1
B
GLN
2
n
2
GLN
2
B
ILE
3
n
3
ILE
3
B
PHE
4
n
4
PHE
4
B
VAL
5
n
5
VAL
5
B
LYS
6
n
6
LYS
6
B
THR
7
n
7
THR
7
B
LEU
8
n
8
LEU
8
B
THR
9
n
9
THR
9
B
GLY
10
n
10
GLY
10
B
LYS
11
n
11
LYS
11
B
THR
12
n
12
THR
12
B
ILE
13
n
13
ILE
13
B
THR
14
n
14
THR
14
B
LEU
15
n
15
LEU
15
B
GLU
16
n
16
GLU
16
B
VAL
17
n
17
VAL
17
B
GLU
18
n
18
GLU
18
B
PRO
19
n
19
PRO
19
B
SER
20
n
20
SER
20
B
ASP
21
n
21
ASP
21
B
THR
22
n
22
THR
22
B
ILE
23
n
23
ILE
23
B
GLU
24
n
24
GLU
24
B
ASN
25
n
25
ASN
25
B
VAL
26
n
26
VAL
26
B
LYS
27
n
27
LYS
27
B
ALA
28
n
28
ALA
28
B
LYS
29
n
29
LYS
29
B
ILE
30
n
30
ILE
30
B
GLN
31
n
31
GLN
31
B
ASP
32
n
32
ASP
32
B
LYS
33
n
33
LYS
33
B
GLU
34
n
34
GLU
34
B
GLY
35
n
35
GLY
35
B
ILE
36
n
36
ILE
36
B
PRO
37
n
37
PRO
37
B
PRO
38
n
38
PRO
38
B
ASP
39
n
39
ASP
39
B
GLN
40
n
40
GLN
40
B
GLN
41
n
41
GLN
41
B
ARG
42
n
42
ARG
42
B
LEU
43
n
43
LEU
43
B
ILE
44
n
44
ILE
44
B
PHE
45
n
45
PHE
45
B
ALA
46
n
46
ALA
46
B
GLY
47
n
47
GLY
47
B
LYS
48
n
48
LYS
48
B
GLN
49
n
49
GLN
49
B
LEU
50
n
50
LEU
50
B
GLU
51
n
51
GLU
51
B
ASP
52
n
52
ASP
52
B
GLY
53
n
53
GLY
53
B
ARG
54
n
54
ARG
54
B
THR
55
n
55
THR
55
B
LEU
56
n
56
LEU
56
B
SER
57
n
57
SER
57
B
ASP
58
n
58
ASP
58
B
TYR
59
n
59
TYR
59
B
ASN
60
n
60
ASN
60
B
ILE
61
n
61
ILE
61
B
GLN
62
n
62
GLN
62
B
LYS
63
n
63
LYS
63
B
GLU
64
n
64
GLU
64
B
SER
65
n
65
SER
65
B
THR
66
n
66
THR
66
B
LEU
67
n
67
LEU
67
B
HIS
68
n
68
HIS
68
B
LEU
69
n
69
LEU
69
B
VAL
70
n
70
VAL
70
B
LEU
71
n
71
LEU
71
B
ARG
72
n
72
ARG
72
B
LEU
73
n
73
LEU
73
B
ARG
74
n
74
ARG
74
B
GLY
75
n
75
GLY
75
B
GLY
76
n
76
GLY
76
B
author_and_software_defined_assembly
PISA
2
dimeric
1480
-8
7950
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1
B
B
OE1
OE2
GLN
GLU
2
64
2.19
1
3.40
0.50
120.30
123.70
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
42
42
42
N
1
7.91
1.20
123.30
131.21
A
A
A
OE1
CD
OE2
GLU
GLU
GLU
51
51
51
N
1
6.00
0.90
118.30
124.30
A
A
A
CB
CG
OD1
ASP
ASP
ASP
52
52
52
N
1
3.15
0.50
120.30
123.45
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
54
54
54
N
1
-4.19
0.50
120.30
116.11
A
A
A
NE
CZ
NH2
ARG
ARG
ARG
54
54
54
N
1
17.29
2.30
115.30
132.59
B
B
B
CA
CB
CG
LEU
LEU
LEU
15
15
15
N
1
17.88
2.20
113.40
131.28
B
B
B
CA
CB
CG
LYS
LYS
LYS
33
33
33
N
1
19.69
1.80
110.60
130.29
B
B
B
N
CA
CB
ARG
ARG
ARG
72
72
72
N
1
10.06
1.40
123.60
133.66
B
B
B
CD
NE
CZ
ARG
ARG
ARG
72
72
72
N
1
3.14
0.50
120.30
123.44
B
B
B
NE
CZ
NH1
ARG
ARG
ARG
72
72
72
N
1
B
ARG
74
-138.04
-65.02
0.1900000
0.1900000
2.3
1
2.3
15
1218
0
0
1203
0.020
4.0
model building
X-PLOR
refinement
X-PLOR
phasing
X-PLOR
DI-UBIQUITIN
STRUCTURE OF A DIUBIQUITIN CONJUGATE AND A MODEL FOR INTERACTION WITH UBIQUITIN CONJUGATING ENZYME (E2)
1
N
N
1
N
N
2
N
N
2
N
N
A
ILE
23
A
ILE
23
HELX_P
A
GLU
34
A
GLU
34
1
A
12
A
LEU
56
A
LEU
56
HELX_P
A
TYR
59
A
TYR
59
5
B
4
B
ILE
23
B
ILE
23
HELX_P
B
GLU
34
B
GLU
34
1
C
12
B
LEU
56
B
LEU
56
HELX_P
B
TYR
59
B
TYR
59
5
D
4
covale
1.308
A
GLY
76
A
C
GLY
76
1_555
B
LYS
48
B
NZ
LYS
48
1_555
UBIQUITIN
UBIQUITIN
UBIQ_BOVIN
UNP
1
1
P62990
MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG
1
76
1AAR
1
76
P62990
A
1
1
76
1
76
1AAR
1
76
P62990
B
1
1
76
5
5
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
MET
1
A
MET
1
A
THR
7
A
THR
7
A
LYS
11
A
LYS
11
A
VAL
17
A
VAL
17
A
GLN
40
A
GLN
40
A
PHE
45
A
PHE
45
A
LYS
48
A
LYS
48
A
LEU
50
A
LEU
50
A
SER
65
A
SER
65
A
ARG
72
A
ARG
72
B
MET
1
B
MET
1
B
THR
7
B
THR
7
B
LYS
11
B
LYS
11
B
VAL
17
B
VAL
17
B
GLN
40
B
GLN
40
B
PHE
45
B
PHE
45
B
LYS
48
B
LYS
48
B
LEU
50
B
LEU
50
B
SER
65
B
SER
65
B
ARG
72
B
ARG
72
1
P 1