0.022026
0.000000
0.000000
0.000000
0.017794
0.000000
0.000000
0.000000
0.007645
0.00000
0.00000
0.00000
Elrod-Erickson, M.
Rould, M.A.
Pabo, C.O.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.00
90.00
90.00
45.400
56.200
130.800
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C10 H14 N5 O6 P
331.222
y
2'-DEOXYADENOSINE-5'-MONOPHOSPHATE
DNA linking
C9 H14 N3 O7 P
307.197
y
2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE
DNA linking
C10 H14 N5 O7 P
347.221
y
2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE
DNA linking
C10 H15 N2 O8 P
322.208
y
THYMIDINE-5'-MONOPHOSPHATE
DNA linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
Zn 2
65.409
ZINC ION
non-polymer
UK
Structure
STRUE6
2005
0969-2126
4
1171
1180
10.1016/S0969-2126(96)00125-6
8939742
Zif268 protein-DNA complex refined at 1.6 A: a model system for understanding zinc finger-DNA interactions.
1996
US
Science
SCIEAS
0038
0036-8075
252
809
Zinc Finger-DNA Recognition: Crystal Structure of a Zif268-DNA Complex at 2.1 A
1991
10.2210/pdb1aay/pdb
pdb_00001aay
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
295.00
1
YALE MIRRORS
IMAGE PLATE
1994-08-01
RIGAKU RAXIS IIC
M
x-ray
1
1.0
ROTATING ANODE
RIGAKU RU200
3430.233
DNA (5'-D(*AP*GP*CP*GP*TP*GP*GP*GP*CP*GP*T)-3')
1
syn
polymer
3279.151
DNA (5'-D(*TP*AP*CP*GP*CP*CP*CP*AP*CP*GP*C)-3')
1
syn
polymer
10853.498
PROTEIN (ZIF268 ZINC FINGER PEPTIDE)
1
man
polymer
65.409
ZINC ION
3
syn
non-polymer
18.015
water
148
nat
water
no
no
(DA)(DG)(DC)(DG)(DT)(DG)(DG)(DG)(DC)(DG)(DT)
AGCGTGGGCGT
B
polydeoxyribonucleotide
no
no
(DT)(DA)(DC)(DG)(DC)(DC)(DC)(DA)(DC)(DG)(DC)
TACGCCCACGC
C
polydeoxyribonucleotide
no
no
MERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKR
HTKIHLRQKD
MERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKR
HTKIHLRQKD
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
house mouse
Mus
Escherichia
Escherichia coli
sample
10090
Mus musculus
469008
Escherichia coli BL21(DE3)
BL21 (DE3)
PZIF89
3
2.40
55.3000
VAPOR DIFFUSION, HANGING DROP
8.0
2.5-5% PEG 400; 500-700MM NACL; 25MM BIS-TRIS PROPANE, PH 8.0, VAPOR DIFFUSION, HANGING DROP
WATER
1
NACL
1
BIS-TRIS-PROPANE_HCL
1
WATER
2
PEG 400
2
-8.167
1
19
B
2
C
61
1.426
B_DG2:DC61_C
1
-1.965
-0.130
-0.276
-0.165
10.040
1
19
B
3
C
60
0.470
B_DC3:DG60_C
2
-6.567
0.415
-0.301
-0.152
-1.702
1
19
B
4
C
59
-1.835
B_DG4:DC59_C
3
-6.214
-0.263
0.108
-0.220
0.277
1
20
B
5
C
58
-0.008
B_DT5:DA58_C
4
-6.127
-0.084
-0.022
-0.230
3.146
1
19
B
6
C
57
1.417
B_DG6:DC57_C
5
-10.430
-0.310
0.114
-0.134
-3.966
1
19
B
7
C
56
-2.316
B_DG7:DC56_C
6
-9.233
-0.307
-0.101
-0.161
-3.668
1
19
B
8
C
55
-1.143
B_DG8:DC55_C
7
-13.523
-0.219
-0.105
-0.216
3.223
1
19
B
9
C
54
-0.791
B_DC9:DG54_C
8
-5.272
0.255
-0.269
-0.133
3.612
1
19
B
10
C
53
-3.186
B_DG10:DC53_C
9
-8.114
-0.086
-0.025
-0.213
6.529
1
20
B
11
C
52
2.635
B_DT11:DA52_C
10
-7.147
0.053
-0.320
-0.233
2.807
26.608
B
B
2
3
12.450
C
C
61
60
2.898
5.687
0.330
-0.169
BB_DG2DC3:DG60DC61_CC
1
0.825
-1.807
25.991
-1.685
-0.526
3.487
37.650
B
B
3
4
12.276
C
C
60
59
3.487
7.822
-0.946
-0.209
BB_DC3DG4:DC59DG60_CC
2
-7.226
11.341
36.165
-1.430
0.444
3.302
28.454
B
B
4
5
11.255
C
C
59
58
3.465
5.497
0.537
-0.630
BB_DG4DT5:DA58DC59_CC
3
1.241
-2.540
27.902
-2.597
-0.795
3.385
34.732
B
B
5
6
5.870
C
C
58
57
3.305
3.485
-0.943
-0.106
BB_DT5DG6:DC57DA58_CC
4
-5.551
9.352
34.127
-0.728
0.703
3.441
30.809
B
B
6
7
6.190
C
C
57
56
3.541
3.282
-0.811
-0.933
BB_DG6DG7:DC56DC57_CC
5
-0.664
1.252
30.631
-2.442
1.387
3.142
36.923
B
B
7
8
17.730
C
C
56
55
3.398
11.062
-0.076
-0.375
BB_DG7DG8:DC55DC56_CC
6
-2.042
3.272
35.225
-2.125
-0.163
3.234
30.937
B
B
8
9
-4.100
C
C
55
54
3.176
-2.183
0.706
-0.271
BB_DG8DC9:DG54DC55_CC
7
2.519
-4.732
30.761
-0.094
-0.844
3.489
34.480
B
B
9
10
10.292
C
C
54
53
3.370
6.054
-1.138
0.307
BB_DC9DG10:DC53DG54_CC
8
-4.495
7.642
33.670
-0.480
1.179
3.386
31.544
B
B
10
11
3.950
C
C
53
52
3.367
2.144
1.053
-0.529
BB_DG10DT11:DA52DC53_CC
9
2.084
-3.839
31.405
-1.386
-1.535
database_2
pdbx_initial_refinement_model
struct_conn
struct_site
repository
Initial release
Version format compliance
Version format compliance
Database references
Derived calculations
Refinement description
1
0
1997-04-21
1
1
2008-05-22
1
2
2011-07-13
1
3
2023-08-02
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
NDB
Y
NDB
1997-01-18
REL
ZN
ZINC ION
HOH
water
1ZAA
PDB ENTRY 1ZAA, WITHOUT WATERS
PDB
experimental model
ZN
201
4
ZN
ZN
201
A
ZN
202
4
ZN
ZN
202
A
ZN
203
4
ZN
ZN
203
A
HOH
205
5
HOH
HOH
205
B
HOH
206
5
HOH
HOH
206
B
HOH
208
5
HOH
HOH
208
B
HOH
209
5
HOH
HOH
209
B
HOH
211
5
HOH
HOH
211
B
HOH
214
5
HOH
HOH
214
B
HOH
216
5
HOH
HOH
216
B
HOH
221
5
HOH
HOH
221
B
HOH
231
5
HOH
HOH
231
B
HOH
247
5
HOH
HOH
247
B
HOH
250
5
HOH
HOH
250
B
HOH
252
5
HOH
HOH
252
B
HOH
254
5
HOH
HOH
254
B
HOH
262
5
HOH
HOH
262
B
HOH
263
5
HOH
HOH
263
B
HOH
264
5
HOH
HOH
264
B
HOH
274
5
HOH
HOH
274
B
HOH
276
5
HOH
HOH
276
B
HOH
277
5
HOH
HOH
277
B
HOH
285
5
HOH
HOH
285
B
HOH
294
5
HOH
HOH
294
B
HOH
295
5
HOH
HOH
295
B
HOH
296
5
HOH
HOH
296
B
HOH
303
5
HOH
HOH
303
B
HOH
313
5
HOH
HOH
313
B
HOH
324
5
HOH
HOH
324
B
HOH
329
5
HOH
HOH
329
B
HOH
330
5
HOH
HOH
330
B
HOH
341
5
HOH
HOH
341
B
HOH
342
5
HOH
HOH
342
B
HOH
357
5
HOH
HOH
357
B
HOH
366
5
HOH
HOH
366
B
HOH
229
5
HOH
HOH
229
C
HOH
244
5
HOH
HOH
244
C
HOH
245
5
HOH
HOH
245
C
HOH
246
5
HOH
HOH
246
C
HOH
251
5
HOH
HOH
251
C
HOH
256
5
HOH
HOH
256
C
HOH
259
5
HOH
HOH
259
C
HOH
266
5
HOH
HOH
266
C
HOH
268
5
HOH
HOH
268
C
HOH
269
5
HOH
HOH
269
C
HOH
297
5
HOH
HOH
297
C
HOH
305
5
HOH
HOH
305
C
HOH
317
5
HOH
HOH
317
C
HOH
319
5
HOH
HOH
319
C
HOH
321
5
HOH
HOH
321
C
HOH
337
5
HOH
HOH
337
C
HOH
343
5
HOH
HOH
343
C
HOH
352
5
HOH
HOH
352
C
HOH
365
5
HOH
HOH
365
C
HOH
367
5
HOH
HOH
367
C
HOH
368
5
HOH
HOH
368
C
HOH
369
5
HOH
HOH
369
C
HOH
370
5
HOH
HOH
370
C
HOH
371
5
HOH
HOH
371
C
HOH
374
5
HOH
HOH
374
C
HOH
377
5
HOH
HOH
377
C
HOH
379
5
HOH
HOH
379
C
HOH
380
5
HOH
HOH
380
C
HOH
204
5
HOH
HOH
204
A
HOH
210
5
HOH
HOH
210
A
HOH
212
5
HOH
HOH
212
A
HOH
213
5
HOH
HOH
213
A
HOH
215
5
HOH
HOH
215
A
HOH
217
5
HOH
HOH
217
A
HOH
218
5
HOH
HOH
218
A
HOH
219
5
HOH
HOH
219
A
HOH
222
5
HOH
HOH
222
A
HOH
223
5
HOH
HOH
223
A
HOH
224
5
HOH
HOH
224
A
HOH
225
5
HOH
HOH
225
A
HOH
226
5
HOH
HOH
226
A
HOH
227
5
HOH
HOH
227
A
HOH
228
5
HOH
HOH
228
A
HOH
230
5
HOH
HOH
230
A
HOH
232
5
HOH
HOH
232
A
HOH
233
5
HOH
HOH
233
A
HOH
234
5
HOH
HOH
234
A
HOH
237
5
HOH
HOH
237
A
HOH
238
5
HOH
HOH
238
A
HOH
239
5
HOH
HOH
239
A
HOH
240
5
HOH
HOH
240
A
HOH
241
5
HOH
HOH
241
A
HOH
242
5
HOH
HOH
242
A
HOH
255
5
HOH
HOH
255
A
HOH
257
5
HOH
HOH
257
A
HOH
258
5
HOH
HOH
258
A
HOH
260
5
HOH
HOH
260
A
HOH
261
5
HOH
HOH
261
A
HOH
265
5
HOH
HOH
265
A
HOH
267
5
HOH
HOH
267
A
HOH
270
5
HOH
HOH
270
A
HOH
271
5
HOH
HOH
271
A
HOH
272
5
HOH
HOH
272
A
HOH
279
5
HOH
HOH
279
A
HOH
280
5
HOH
HOH
280
A
HOH
281
5
HOH
HOH
281
A
HOH
282
5
HOH
HOH
282
A
HOH
286
5
HOH
HOH
286
A
HOH
287
5
HOH
HOH
287
A
HOH
288
5
HOH
HOH
288
A
HOH
291
5
HOH
HOH
291
A
HOH
298
5
HOH
HOH
298
A
HOH
299
5
HOH
HOH
299
A
HOH
300
5
HOH
HOH
300
A
HOH
301
5
HOH
HOH
301
A
HOH
302
5
HOH
HOH
302
A
HOH
304
5
HOH
HOH
304
A
HOH
306
5
HOH
HOH
306
A
HOH
307
5
HOH
HOH
307
A
HOH
308
5
HOH
HOH
308
A
HOH
309
5
HOH
HOH
309
A
HOH
310
5
HOH
HOH
310
A
HOH
314
5
HOH
HOH
314
A
HOH
315
5
HOH
HOH
315
A
HOH
318
5
HOH
HOH
318
A
HOH
320
5
HOH
HOH
320
A
HOH
325
5
HOH
HOH
325
A
HOH
326
5
HOH
HOH
326
A
HOH
328
5
HOH
HOH
328
A
HOH
331
5
HOH
HOH
331
A
HOH
333
5
HOH
HOH
333
A
HOH
334
5
HOH
HOH
334
A
HOH
335
5
HOH
HOH
335
A
HOH
336
5
HOH
HOH
336
A
HOH
338
5
HOH
HOH
338
A
HOH
344
5
HOH
HOH
344
A
HOH
345
5
HOH
HOH
345
A
HOH
346
5
HOH
HOH
346
A
HOH
347
5
HOH
HOH
347
A
HOH
348
5
HOH
HOH
348
A
HOH
350
5
HOH
HOH
350
A
HOH
351
5
HOH
HOH
351
A
HOH
353
5
HOH
HOH
353
A
HOH
354
5
HOH
HOH
354
A
HOH
356
5
HOH
HOH
356
A
HOH
359
5
HOH
HOH
359
A
HOH
360
5
HOH
HOH
360
A
HOH
363
5
HOH
HOH
363
A
HOH
372
5
HOH
HOH
372
A
HOH
373
5
HOH
HOH
373
A
HOH
378
5
HOH
HOH
378
A
HOH
381
5
HOH
HOH
381
A
HOH
382
5
HOH
HOH
382
A
HOH
383
5
HOH
HOH
383
A
HOH
384
5
HOH
HOH
384
A
HOH
385
5
HOH
HOH
385
A
A
1
n
1
DA
1
B
G
2
n
2
DG
2
B
C
3
n
3
DC
3
B
G
4
n
4
DG
4
B
T
5
n
5
DT
5
B
G
6
n
6
DG
6
B
G
7
n
7
DG
7
B
G
8
n
8
DG
8
B
C
9
n
9
DC
9
B
G
10
n
10
DG
10
B
T
11
n
11
DT
11
B
T
51
n
1
DT
51
C
A
52
n
2
DA
52
C
C
53
n
3
DC
53
C
G
54
n
4
DG
54
C
C
55
n
5
DC
55
C
C
56
n
6
DC
56
C
C
57
n
7
DC
57
C
A
58
n
8
DA
58
C
C
59
n
9
DC
59
C
G
60
n
10
DG
60
C
C
61
n
11
DC
61
C
n
1
101
A
n
2
102
A
ARG
103
n
3
ARG
103
A
PRO
104
n
4
PRO
104
A
TYR
105
n
5
TYR
105
A
ALA
106
n
6
ALA
106
A
CYS
107
n
7
CYS
107
A
PRO
108
n
8
PRO
108
A
VAL
109
n
9
VAL
109
A
GLU
110
n
10
GLU
110
A
SER
111
n
11
SER
111
A
CYS
112
n
12
CYS
112
A
ASP
113
n
13
ASP
113
A
ARG
114
n
14
ARG
114
A
ARG
115
n
15
ARG
115
A
PHE
116
n
16
PHE
116
A
SER
117
n
17
SER
117
A
ARG
118
n
18
ARG
118
A
SER
119
n
19
SER
119
A
ASP
120
n
20
ASP
120
A
GLU
121
n
21
GLU
121
A
LEU
122
n
22
LEU
122
A
THR
123
n
23
THR
123
A
ARG
124
n
24
ARG
124
A
HIS
125
n
25
HIS
125
A
ILE
126
n
26
ILE
126
A
ARG
127
n
27
ARG
127
A
ILE
128
n
28
ILE
128
A
HIS
129
n
29
HIS
129
A
THR
130
n
30
THR
130
A
GLY
131
n
31
GLY
131
A
GLN
132
n
32
GLN
132
A
LYS
133
n
33
LYS
133
A
PRO
134
n
34
PRO
134
A
PHE
135
n
35
PHE
135
A
GLN
136
n
36
GLN
136
A
CYS
137
n
37
CYS
137
A
ARG
138
n
38
ARG
138
A
ILE
139
n
39
ILE
139
A
CYS
140
n
40
CYS
140
A
MET
141
n
41
MET
141
A
ARG
142
n
42
ARG
142
A
ASN
143
n
43
ASN
143
A
PHE
144
n
44
PHE
144
A
SER
145
n
45
SER
145
A
ARG
146
n
46
ARG
146
A
SER
147
n
47
SER
147
A
ASP
148
n
48
ASP
148
A
HIS
149
n
49
HIS
149
A
LEU
150
n
50
LEU
150
A
THR
151
n
51
THR
151
A
THR
152
n
52
THR
152
A
HIS
153
n
53
HIS
153
A
ILE
154
n
54
ILE
154
A
ARG
155
n
55
ARG
155
A
THR
156
n
56
THR
156
A
HIS
157
n
57
HIS
157
A
THR
158
n
58
THR
158
A
GLY
159
n
59
GLY
159
A
GLU
160
n
60
GLU
160
A
LYS
161
n
61
LYS
161
A
PRO
162
n
62
PRO
162
A
PHE
163
n
63
PHE
163
A
ALA
164
n
64
ALA
164
A
CYS
165
n
65
CYS
165
A
ASP
166
n
66
ASP
166
A
ILE
167
n
67
ILE
167
A
CYS
168
n
68
CYS
168
A
GLY
169
n
69
GLY
169
A
ARG
170
n
70
ARG
170
A
LYS
171
n
71
LYS
171
A
PHE
172
n
72
PHE
172
A
ALA
173
n
73
ALA
173
A
ARG
174
n
74
ARG
174
A
SER
175
n
75
SER
175
A
ASP
176
n
76
ASP
176
A
GLU
177
n
77
GLU
177
A
ARG
178
n
78
ARG
178
A
LYS
179
n
79
LYS
179
A
ARG
180
n
80
ARG
180
A
HIS
181
n
81
HIS
181
A
THR
182
n
82
THR
182
A
LYS
183
n
83
LYS
183
A
ILE
184
n
84
ILE
184
A
HIS
185
n
85
HIS
185
A
LEU
186
n
86
LEU
186
A
ARG
187
n
87
ARG
187
A
n
88
188
A
n
89
189
A
n
90
190
A
author_defined_assembly
3
trimeric
A
CYS
107
C
SG
CYS
7
1_555
A
ZN
201
D
ZN
ZN
1_555
A
CYS
112
C
SG
CYS
12
1_555
114.8
A
CYS
107
C
SG
CYS
7
1_555
A
ZN
201
D
ZN
ZN
1_555
A
HIS
125
C
NE2
HIS
25
1_555
106.9
A
CYS
112
C
SG
CYS
12
1_555
A
ZN
201
D
ZN
ZN
1_555
A
HIS
125
C
NE2
HIS
25
1_555
109.6
A
CYS
107
C
SG
CYS
7
1_555
A
ZN
201
D
ZN
ZN
1_555
A
HIS
129
C
NE2
HIS
29
1_555
107.9
A
CYS
112
C
SG
CYS
12
1_555
A
ZN
201
D
ZN
ZN
1_555
A
HIS
129
C
NE2
HIS
29
1_555
111.5
A
HIS
125
C
NE2
HIS
25
1_555
A
ZN
201
D
ZN
ZN
1_555
A
HIS
129
C
NE2
HIS
29
1_555
105.7
A
CYS
137
C
SG
CYS
37
1_555
A
ZN
202
E
ZN
ZN
1_555
A
CYS
140
C
SG
CYS
40
1_555
115.7
A
CYS
137
C
SG
CYS
37
1_555
A
ZN
202
E
ZN
ZN
1_555
A
HIS
153
C
NE2
HIS
53
1_555
108.5
A
CYS
140
C
SG
CYS
40
1_555
A
ZN
202
E
ZN
ZN
1_555
A
HIS
153
C
NE2
HIS
53
1_555
110.7
A
CYS
137
C
SG
CYS
37
1_555
A
ZN
202
E
ZN
ZN
1_555
A
HIS
157
C
NE2
HIS
57
1_555
111.0
A
CYS
140
C
SG
CYS
40
1_555
A
ZN
202
E
ZN
ZN
1_555
A
HIS
157
C
NE2
HIS
57
1_555
114.2
A
HIS
153
C
NE2
HIS
53
1_555
A
ZN
202
E
ZN
ZN
1_555
A
HIS
157
C
NE2
HIS
57
1_555
94.8
A
CYS
165
C
SG
CYS
65
1_555
A
ZN
203
F
ZN
ZN
1_555
A
CYS
168
C
SG
CYS
68
1_555
116.9
A
CYS
165
C
SG
CYS
65
1_555
A
ZN
203
F
ZN
ZN
1_555
A
HIS
181
C
NE2
HIS
81
1_555
103.3
A
CYS
168
C
SG
CYS
68
1_555
A
ZN
203
F
ZN
ZN
1_555
A
HIS
181
C
NE2
HIS
81
1_555
104.7
A
CYS
165
C
SG
CYS
65
1_555
A
ZN
203
F
ZN
ZN
1_555
A
HIS
185
C
NE2
HIS
85
1_555
103.9
A
CYS
168
C
SG
CYS
68
1_555
A
ZN
203
F
ZN
ZN
1_555
A
HIS
185
C
NE2
HIS
85
1_555
118.2
A
HIS
181
C
NE2
HIS
81
1_555
A
ZN
203
F
ZN
ZN
1_555
A
HIS
185
C
NE2
HIS
85
1_555
108.7
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
O
TYR
105
C
O
TYR
5
A
N
PHE
116
C
N
PHE
16
A
O
PHE
135
C
O
PHE
35
A
N
PHE
144
C
N
PHE
44
A
O
PHE
163
C
O
PHE
63
A
N
PHE
172
C
N
PHE
72
1
A
HOH
302
I
HOH
1
A
HOH
347
I
HOH
1
A
MET
101
C
MET
1
1
Y
1
A
GLU
102
C
GLU
2
1
Y
1
A
GLN
188
C
GLN
88
1
Y
1
A
LYS
189
C
LYS
89
1
Y
1
A
ASP
190
C
ASP
90
1
Y
1
3.26
0.30
108.30
111.56
B
B
B
O4'
C1'
N1
DC
DC
DC
3
3
3
N
1
-4.92
0.80
105.90
100.98
B
B
B
O4'
C1'
C2'
DT
DT
DT
5
5
5
N
1
2.75
0.30
108.30
111.05
B
B
B
O4'
C1'
N1
DT
DT
DT
5
5
5
N
1
2.89
0.30
108.30
111.19
B
B
B
O4'
C1'
N1
DC
DC
DC
9
9
9
N
1
2.12
0.30
108.30
110.42
B
B
B
O4'
C1'
N1
DT
DT
DT
11
11
11
N
1
3.43
0.30
108.30
111.73
C
C
C
O4'
C1'
N9
DA
DA
DA
52
52
52
N
1
-4.81
0.80
105.90
101.09
C
C
C
O4'
C1'
C2'
DG
DG
DG
54
54
54
N
1
2.05
0.30
108.30
110.35
C
C
C
O4'
C1'
N1
DC
DC
DC
56
56
56
N
1
4.21
0.60
118.90
123.11
C
C
C
N1
C2
O2
DC
DC
DC
56
56
56
N
1
3.94
0.30
108.30
112.24
C
C
C
O4'
C1'
N1
DC
DC
DC
57
57
57
N
1
-7.60
1.00
110.10
102.50
C
C
C
C1'
O4'
C4'
DA
DA
DA
58
58
58
N
1
2.14
0.30
108.30
110.44
C
C
C
O4'
C1'
N1
DC
DC
DC
59
59
59
N
1
B
B
C5
C7
DT
DT
5
5
0.040
0.006
1.496
1.536
N
30.00
0.2420000
0.1950000
0.2030000
0.1950000
1.600
6.000
2312
19207
12.00
87.000
RANDOM
100000.000
0.0100
1
RESTRAINED INDIVIDUAL
THROUGOUT
2.000
MOLECULAR REPLACEMENT
PDB ENTRY 1ZAA, WITHOUT WATERS
1.600
6.000
148
1330
3
445
734
0.007
0.009
1.29
3.02
22.8
29.8
1.23
0.60
1.460
1.000
2.380
1.500
2.030
1.000
3.300
1.500
0.2860000
0.2660000
1.67
242
1674
8
12.60
70.10
1.600
20.000
1AAY
22749
-2.000
-2.000
0.0620000
0.0250000
1
34.500
6.500
96.600
0.5340000
1.600
1.660
2.000
0.2230000
4.000
92.80
model building
X-PLOR
refinement
X-PLOR
data reduction
DENZO
data scaling
SCALEPACK
phasing
X-PLOR
ZIF268 ZINC FINGER-DNA COMPLEX
1
N
N
2
N
N
3
N
N
4
N
N
4
N
N
4
N
N
5
N
N
5
N
N
5
N
N
A
SER
119
C
SER
19
HELX_P
A
THR
130
C
THR
30
1
1
12
A
SER
147
C
SER
47
HELX_P
A
THR
158
C
THR
58
1
2
12
A
SER
175
C
SER
75
HELX_P
A
HIS
185
C
HIS
85
1
3
11
metalc
2.215
A
CYS
107
C
SG
CYS
7
1_555
A
ZN
201
D
ZN
ZN
1_555
metalc
2.377
A
CYS
112
C
SG
CYS
12
1_555
A
ZN
201
D
ZN
ZN
1_555
metalc
2.081
A
HIS
125
C
NE2
HIS
25
1_555
A
ZN
201
D
ZN
ZN
1_555
metalc
1.940
A
HIS
129
C
NE2
HIS
29
1_555
A
ZN
201
D
ZN
ZN
1_555
metalc
2.284
A
CYS
137
C
SG
CYS
37
1_555
A
ZN
202
E
ZN
ZN
1_555
metalc
2.249
A
CYS
140
C
SG
CYS
40
1_555
A
ZN
202
E
ZN
ZN
1_555
metalc
2.060
A
HIS
153
C
NE2
HIS
53
1_555
A
ZN
202
E
ZN
ZN
1_555
metalc
2.068
A
HIS
157
C
NE2
HIS
57
1_555
A
ZN
202
E
ZN
ZN
1_555
metalc
2.254
A
CYS
165
C
SG
CYS
65
1_555
A
ZN
203
F
ZN
ZN
1_555
metalc
2.154
A
CYS
168
C
SG
CYS
68
1_555
A
ZN
203
F
ZN
ZN
1_555
metalc
2.041
A
HIS
181
C
NE2
HIS
81
1_555
A
ZN
203
F
ZN
ZN
1_555
metalc
2.078
A
HIS
185
C
NE2
HIS
85
1_555
A
ZN
203
F
ZN
ZN
1_555
hydrog
WATSON-CRICK
B
DG
2
A
N1
DG
2
1_555
C
DC
61
B
N3
DC
11
1_555
hydrog
WATSON-CRICK
B
DG
2
A
N2
DG
2
1_555
C
DC
61
B
O2
DC
11
1_555
hydrog
WATSON-CRICK
B
DG
2
A
O6
DG
2
1_555
C
DC
61
B
N4
DC
11
1_555
hydrog
WATSON-CRICK
B
DC
3
A
N3
DC
3
1_555
C
DG
60
B
N1
DG
10
1_555
hydrog
WATSON-CRICK
B
DC
3
A
N4
DC
3
1_555
C
DG
60
B
O6
DG
10
1_555
hydrog
WATSON-CRICK
B
DC
3
A
O2
DC
3
1_555
C
DG
60
B
N2
DG
10
1_555
hydrog
WATSON-CRICK
B
DG
4
A
N1
DG
4
1_555
C
DC
59
B
N3
DC
9
1_555
hydrog
WATSON-CRICK
B
DG
4
A
N2
DG
4
1_555
C
DC
59
B
O2
DC
9
1_555
hydrog
WATSON-CRICK
B
DG
4
A
O6
DG
4
1_555
C
DC
59
B
N4
DC
9
1_555
hydrog
WATSON-CRICK
B
DT
5
A
N3
DT
5
1_555
C
DA
58
B
N1
DA
8
1_555
hydrog
WATSON-CRICK
B
DT
5
A
O4
DT
5
1_555
C
DA
58
B
N6
DA
8
1_555
hydrog
WATSON-CRICK
B
DG
6
A
N1
DG
6
1_555
C
DC
57
B
N3
DC
7
1_555
hydrog
WATSON-CRICK
B
DG
6
A
N2
DG
6
1_555
C
DC
57
B
O2
DC
7
1_555
hydrog
WATSON-CRICK
B
DG
6
A
O6
DG
6
1_555
C
DC
57
B
N4
DC
7
1_555
hydrog
WATSON-CRICK
B
DG
7
A
N1
DG
7
1_555
C
DC
56
B
N3
DC
6
1_555
hydrog
WATSON-CRICK
B
DG
7
A
N2
DG
7
1_555
C
DC
56
B
O2
DC
6
1_555
hydrog
WATSON-CRICK
B
DG
7
A
O6
DG
7
1_555
C
DC
56
B
N4
DC
6
1_555
hydrog
WATSON-CRICK
B
DG
8
A
N1
DG
8
1_555
C
DC
55
B
N3
DC
5
1_555
hydrog
WATSON-CRICK
B
DG
8
A
N2
DG
8
1_555
C
DC
55
B
O2
DC
5
1_555
hydrog
WATSON-CRICK
B
DG
8
A
O6
DG
8
1_555
C
DC
55
B
N4
DC
5
1_555
hydrog
WATSON-CRICK
B
DC
9
A
N3
DC
9
1_555
C
DG
54
B
N1
DG
4
1_555
hydrog
WATSON-CRICK
B
DC
9
A
N4
DC
9
1_555
C
DG
54
B
O6
DG
4
1_555
hydrog
WATSON-CRICK
B
DC
9
A
O2
DC
9
1_555
C
DG
54
B
N2
DG
4
1_555
hydrog
WATSON-CRICK
B
DG
10
A
N1
DG
10
1_555
C
DC
53
B
N3
DC
3
1_555
hydrog
WATSON-CRICK
B
DG
10
A
N2
DG
10
1_555
C
DC
53
B
O2
DC
3
1_555
hydrog
WATSON-CRICK
B
DG
10
A
O6
DG
10
1_555
C
DC
53
B
N4
DC
3
1_555
hydrog
WATSON-CRICK
B
DT
11
A
N3
DT
11
1_555
C
DA
52
B
N1
DA
2
1_555
hydrog
WATSON-CRICK
B
DT
11
A
O4
DT
11
1_555
C
DA
52
B
N6
DA
2
1_555
TRANSCRIPTION/DNA
ZINC FINGER, DNA-BINDING PROTEIN, COMPLEX (ZINC FINGER-DNA), TRANSCRIPTION-DNA COMPLEX
EGR1_MOUSE
UNP
3
P08046
1AAY
PDB
1
1AAY
1AAY
PDB
2
1AAY
308
396
1AAY
102
190
P08046
A
1
2
90
1
11
1AAY
1
11
1AAY
B
2
1
11
51
61
1AAY
51
61
1AAY
C
3
1
11
2
2
2
anti-parallel
anti-parallel
anti-parallel
A
TYR
105
C
TYR
5
A
ALA
106
C
ALA
6
A
ARG
115
C
ARG
15
A
PHE
116
C
PHE
16
A
PHE
135
C
PHE
35
A
GLN
136
C
GLN
36
A
ASN
143
C
ASN
43
A
PHE
144
C
PHE
44
A
PHE
163
C
PHE
63
A
ALA
164
C
ALA
64
A
LYS
171
C
LYS
71
A
PHE
172
C
PHE
72
BINDING SITE FOR RESIDUE ZN A 201
A
ZN
201
Software
4
BINDING SITE FOR RESIDUE ZN A 202
A
ZN
202
Software
4
BINDING SITE FOR RESIDUE ZN A 203
A
ZN
203
Software
4
A
CYS
107
C
CYS
7
4
1_555
A
CYS
112
C
CYS
12
4
1_555
A
HIS
125
C
HIS
25
4
1_555
A
HIS
129
C
HIS
29
4
1_555
A
CYS
137
C
CYS
37
4
1_555
A
CYS
140
C
CYS
40
4
1_555
A
HIS
153
C
HIS
53
4
1_555
A
HIS
157
C
HIS
57
4
1_555
A
CYS
165
C
CYS
65
4
1_555
A
CYS
168
C
CYS
68
4
1_555
A
HIS
181
C
HIS
81
4
1_555
A
HIS
185
C
HIS
85
4
1_555
20
C 2 2 21