1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Foti, M.
Marshalko, S.
Schurter, E.
Kumar, S.
Beardsley, G.P.
Schweitzer, B.I.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
1
90.00
90.00
90.00
1.000
1.000
1.000
C10 H14 N5 O6 P
331.222
y
2'-DEOXYADENOSINE-5'-MONOPHOSPHATE
DNA linking
C9 H14 N3 O7 P
307.197
y
2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE
DNA linking
C10 H14 N5 O7 P
347.221
y
2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE
DNA linking
C10 H15 N2 O8 P
322.208
y
THYMIDINE-5'-MONOPHOSPHATE
DNA linking
C9 H14 N5 O7 P
335.211
n
N9-1-HYDROXY-PROP-2-OXYMETHYL-GUANINE-3'-MONOPHOSPHATE
LINEAR DECARBON-C2* GUANOSINE-5'-MONOPHOSPHATE
DNA linking
US
Biochemistry
BICHAW
0033
0006-2960
36
5336
5345
10.1021/bi962604e
9154915
Solution structure of a DNA decamer containing the antiviral drug ganciclovir: combined use of NMR, restrained molecular dynamics, and full relaxation matrix refinement.
1997
10.2210/pdb1ac9/pdb
pdb_00001ac9
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
3032.995
DNA
2
syn
polymer
(CTG-LGP-ATCCAG)
no
yes
(DC)(DT)(DG)(LGP)(DA)(DT)(DC)(DC)(DA)(DG)
CTGGATCCAG
A,B
polydeoxyribonucleotide
n
n
n
n
n
n
n
n
n
n
-7.599
1
19
A
1
B
20
-2.074
A_DC1:DG20_B
1
-1.812
0.555
-0.035
-0.423
2.741
1
20
A
2
B
19
-1.837
A_DT2:DA19_B
2
-10.765
-0.225
-0.277
-0.255
4.033
1
19
A
3
B
18
2.683
A_DG3:DC18_B
3
-11.196
-0.378
-0.271
-0.406
-2.441
1
19
A
4
B
17
0.054
A_LGP4:DC17_B
4
-10.780
-0.446
-0.452
-0.432
-5.830
1
20
A
5
B
16
-13.645
A_DA5:DT16_B
5
-10.149
0.096
0.134
-0.302
5.893
1
20
A
6
B
15
-13.623
A_DT6:DA15_B
6
-10.139
-0.118
0.133
-0.295
2.488
1
19
A
7
B
14
0.078
A_DC7:LGP14_B
7
-10.797
0.432
-0.456
-0.413
-3.960
1
19
A
8
B
13
2.704
A_DC8:DG13_B
8
-11.235
0.374
-0.276
-0.385
-2.659
1
20
A
9
B
12
-1.816
A_DA9:DT12_B
9
-10.795
0.236
-0.278
-0.235
7.582
1
19
A
10
B
11
-2.011
A_DG10:DC11_B
10
-1.896
-0.533
-0.030
-0.406
2.548
27.191
A
A
1
2
18.002
B
B
20
19
2.883
8.298
0.145
-0.628
AA_DC1DT2:DA19DG20_BB
1
4.242
-9.204
25.572
-3.122
0.605
2.306
36.403
A
A
2
3
27.558
B
B
19
18
3.057
16.616
0.176
-0.963
AA_DT2DG3:DC18DA19_BB
2
-0.863
1.432
32.493
-3.552
-0.386
3.501
29.554
A
A
3
4
6.980
B
B
18
17
3.506
3.550
1.202
-0.388
AA_DG3LGP4:DC17DC18_BB
3
1.802
-3.544
29.291
-1.572
-1.944
3.173
40.439
A
A
4
5
-6.669
B
B
17
16
3.136
-4.562
-0.614
0.016
AA_LGP4DA5:DT16DC17_BB
4
-9.300
13.594
39.143
0.525
-0.136
3.067
35.998
A
A
5
6
-2.087
B
B
16
15
3.039
-1.289
0.000
-0.840
AA_DA5DT6:DA15DT16_BB
5
0.009
-0.015
35.975
-1.189
0.001
3.173
40.442
A
A
6
7
-6.665
B
B
15
14
3.136
-4.560
0.613
0.017
AA_DT6DC7:LGP14DA15_BB
6
9.312
-13.610
39.144
0.527
0.138
3.502
29.521
A
A
7
8
6.922
B
B
14
13
3.506
3.517
-1.200
-0.388
AA_DC7DC8:DG13LGP14_BB
7
-1.779
3.500
29.263
-1.565
1.948
2.303
36.466
A
A
8
9
27.670
B
B
13
12
3.056
16.707
-0.175
-0.961
AA_DC8DA9:DT12DG13_BB
8
0.844
-1.398
32.519
-3.550
0.382
2.554
27.212
A
A
9
10
17.892
B
B
12
11
2.886
8.255
-0.145
-0.627
AA_DA9DG10:DC11DT12_BB
9
-4.265
9.244
25.605
-3.109
-0.609
database_2
pdbx_database_status
pdbx_struct_assembly
pdbx_struct_oper_list
struct_conn
repository
Initial release
Version format compliance
Version format compliance
Database references
Derived calculations
Other
1
0
1997-07-07
1
1
2008-03-24
1
2
2011-07-13
1
3
2022-02-16
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_database_status.process_site
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
Y
BNL
1997-02-17
REL
LOWEST ENERGY STRUCTURE
6
6
NOESY
TOCSY
HETEROTOCSY
COSY
DQFCOSY
HSQC
HMQC
6.8
283
K
SIX TOTAL STRUCTURES DETERMINED (3 FROM CANONICAL A-TYPE DNA AND 3 FROM CANONICAL B-TYPE DNA). ALL STRUCTURES WERE GENERATED WITH DIFFERENT STARTING RANDOM NUMBER SEEDS. STRUCTURES GENERATED FROM A-TYPE: MODELS 1 - 3 STRUCTURES GENERATED FROM B-TYPE: MOD ELS 4 - 6
RESTRAINED MOLECULAR DYNAMICS
BRUNGER
refinement
X-PLOR
3.1
structure solution
FELIX95.0
structure solution
X-PLOR
600
Varian
UNITYPLUS
C
1
n
1
DC
1
A
T
2
n
2
DT
2
A
G
3
n
3
DG
3
A
LGP
4
n
4
LGP
4
A
A
5
n
5
DA
5
A
T
6
n
6
DT
6
A
C
7
n
7
DC
7
A
C
8
n
8
DC
8
A
A
9
n
9
DA
9
A
G
10
n
10
DG
10
A
C
11
n
1
DC
11
B
T
12
n
2
DT
12
B
G
13
n
3
DG
13
B
LGP
14
n
4
LGP
14
B
A
15
n
5
DA
15
B
T
16
n
6
DT
16
B
C
17
n
7
DC
17
B
C
18
n
8
DC
18
B
A
19
n
9
DA
19
B
G
20
n
10
DG
20
B
author_defined_assembly
2
dimeric
A
LGP
4
A
LGP
4
DG
B
LGP
14
B
LGP
4
DG
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1
A
B
H61
O4
DA
DT
5
16
1.48
1
A
B
O4
H61
DT
DA
6
15
1.48
2
A
B
H61
O4
DA
DT
5
16
1.50
2
A
B
O4
H61
DT
DA
6
15
1.51
3
A
B
O6
H41
DG
DC
3
18
1.54
3
A
B
H41
O6
DC
DG
8
13
1.57
3
A
B
O4
H61
DT
DA
2
19
1.58
3
A
B
H21
O2
DG
DC
3
18
1.58
3
A
B
H1
N3
DG
DC
3
18
1.58
3
A
B
O4
H61
DT
DA
6
15
1.60
3
A
B
H61
O4
DA
DT
5
16
1.60
3
A
B
H61
O4
DA
DT
9
12
1.60
5
A
B
H21
O2
DG
DC
3
18
1.59
5
A
B
H1
N3
DG
DC
3
18
1.59
5
A
B
H61
O4
DA
DT
5
16
1.60
1
2.53
0.30
108.30
110.83
A
A
A
O4'
C1'
N1
DC
DC
DC
1
1
1
N
1
4.24
0.30
108.30
112.54
A
A
A
O4'
C1'
N1
DT
DT
DT
2
2
2
N
1
4.29
0.30
108.30
112.59
A
A
A
O4'
C1'
N9
DG
DG
DG
3
3
3
N
1
4.70
0.50
113.10
117.80
A
A
A
N7
C8
N9
DG
DG
DG
3
3
3
N
1
-2.49
0.40
106.40
103.91
A
A
A
C8
N9
C4
DG
DG
DG
3
3
3
N
1
5.00
0.30
108.30
113.30
A
A
A
O4'
C1'
N9
DA
DA
DA
5
5
5
N
1
4.05
0.50
113.80
117.85
A
A
A
N7
C8
N9
DA
DA
DA
5
5
5
N
1
2.10
0.30
108.30
110.40
A
A
A
O4'
C1'
N1
DC
DC
DC
8
8
8
N
1
2.24
0.30
108.30
110.54
A
A
A
O4'
C1'
N9
DA
DA
DA
9
9
9
N
1
4.00
0.50
113.80
117.80
A
A
A
N7
C8
N9
DA
DA
DA
9
9
9
N
1
2.51
0.30
108.30
110.81
A
A
A
O4'
C1'
N9
DG
DG
DG
10
10
10
N
1
4.73
0.50
113.10
117.83
A
A
A
N7
C8
N9
DG
DG
DG
10
10
10
N
1
2.53
0.30
108.30
110.83
B
B
B
O4'
C1'
N1
DC
DC
DC
11
11
11
N
1
4.22
0.30
108.30
112.52
B
B
B
O4'
C1'
N1
DT
DT
DT
12
12
12
N
1
4.30
0.30
108.30
112.60
B
B
B
O4'
C1'
N9
DG
DG
DG
13
13
13
N
1
4.66
0.50
113.10
117.76
B
B
B
N7
C8
N9
DG
DG
DG
13
13
13
N
1
-2.52
0.40
106.40
103.88
B
B
B
C8
N9
C4
DG
DG
DG
13
13
13
N
1
4.98
0.30
108.30
113.28
B
B
B
O4'
C1'
N9
DA
DA
DA
15
15
15
N
1
4.09
0.50
113.80
117.89
B
B
B
N7
C8
N9
DA
DA
DA
15
15
15
N
1
2.10
0.30
108.30
110.40
B
B
B
O4'
C1'
N1
DC
DC
DC
18
18
18
N
1
2.19
0.30
108.30
110.49
B
B
B
O4'
C1'
N9
DA
DA
DA
19
19
19
N
1
3.85
0.50
113.80
117.65
B
B
B
N7
C8
N9
DA
DA
DA
19
19
19
N
1
2.56
0.30
108.30
110.86
B
B
B
O4'
C1'
N9
DG
DG
DG
20
20
20
N
1
4.65
0.50
113.10
117.75
B
B
B
N7
C8
N9
DG
DG
DG
20
20
20
N
1
-2.43
0.40
106.40
103.97
B
B
B
C8
N9
C4
DG
DG
DG
20
20
20
N
2
2.46
0.30
108.30
110.76
A
A
A
O4'
C1'
N1
DC
DC
DC
1
1
1
N
2
4.02
0.30
108.30
112.32
A
A
A
O4'
C1'
N1
DT
DT
DT
2
2
2
N
2
4.44
0.30
108.30
112.74
A
A
A
O4'
C1'
N9
DG
DG
DG
3
3
3
N
2
4.46
0.50
113.10
117.56
A
A
A
N7
C8
N9
DG
DG
DG
3
3
3
N
2
4.33
0.30
108.30
112.63
A
A
A
O4'
C1'
N9
DA
DA
DA
5
5
5
N
2
4.05
0.50
113.80
117.85
A
A
A
N7
C8
N9
DA
DA
DA
5
5
5
N
2
2.19
0.30
108.30
110.49
A
A
A
O4'
C1'
N1
DC
DC
DC
7
7
7
N
2
2.43
0.30
108.30
110.73
A
A
A
O4'
C1'
N1
DC
DC
DC
8
8
8
N
2
2.45
0.30
108.30
110.75
A
A
A
O4'
C1'
N9
DA
DA
DA
9
9
9
N
2
3.77
0.50
113.80
117.57
A
A
A
N7
C8
N9
DA
DA
DA
9
9
9
N
2
2.91
0.30
108.30
111.21
A
A
A
O4'
C1'
N9
DG
DG
DG
10
10
10
N
2
4.53
0.50
113.10
117.63
A
A
A
N7
C8
N9
DG
DG
DG
10
10
10
N
2
2.49
0.30
108.30
110.79
B
B
B
O4'
C1'
N1
DC
DC
DC
11
11
11
N
2
4.01
0.30
108.30
112.31
B
B
B
O4'
C1'
N1
DT
DT
DT
12
12
12
N
2
4.52
0.30
108.30
112.82
B
B
B
O4'
C1'
N9
DG
DG
DG
13
13
13
N
2
4.62
0.50
113.10
117.72
B
B
B
N7
C8
N9
DG
DG
DG
13
13
13
N
2
4.40
0.30
108.30
112.70
B
B
B
O4'
C1'
N9
DA
DA
DA
15
15
15
N
2
4.13
0.50
113.80
117.93
B
B
B
N7
C8
N9
DA
DA
DA
15
15
15
N
2
2.04
0.30
108.30
110.34
B
B
B
O4'
C1'
N1
DC
DC
DC
17
17
17
N
2
2.34
0.30
108.30
110.64
B
B
B
O4'
C1'
N1
DC
DC
DC
18
18
18
N
2
2.40
0.30
108.30
110.70
B
B
B
O4'
C1'
N9
DA
DA
DA
19
19
19
N
2
3.77
0.50
113.80
117.57
B
B
B
N7
C8
N9
DA
DA
DA
19
19
19
N
2
2.78
0.30
108.30
111.08
B
B
B
O4'
C1'
N9
DG
DG
DG
20
20
20
N
2
4.47
0.50
113.10
117.57
B
B
B
N7
C8
N9
DG
DG
DG
20
20
20
N
3
4.00
0.30
108.30
112.30
A
A
A
O4'
C1'
N1
DT
DT
DT
2
2
2
N
3
4.53
0.30
108.30
112.83
A
A
A
O4'
C1'
N9
DG
DG
DG
3
3
3
N
3
4.64
0.50
113.10
117.74
A
A
A
N7
C8
N9
DG
DG
DG
3
3
3
N
3
-2.44
0.40
106.40
103.96
A
A
A
C8
N9
C4
DG
DG
DG
3
3
3
N
3
4.99
0.30
108.30
113.29
A
A
A
O4'
C1'
N9
DA
DA
DA
5
5
5
N
3
4.09
0.50
113.80
117.89
A
A
A
N7
C8
N9
DA
DA
DA
5
5
5
N
3
2.11
0.30
108.30
110.41
A
A
A
O4'
C1'
N1
DC
DC
DC
7
7
7
N
3
2.46
0.30
108.30
110.76
A
A
A
O4'
C1'
N1
DC
DC
DC
8
8
8
N
3
1.86
0.30
108.30
110.16
A
A
A
O4'
C1'
N9
DA
DA
DA
9
9
9
N
3
3.76
0.50
113.80
117.56
A
A
A
N7
C8
N9
DA
DA
DA
9
9
9
N
3
3.16
0.30
108.30
111.46
A
A
A
O4'
C1'
N9
DG
DG
DG
10
10
10
N
3
4.53
0.50
113.10
117.63
A
A
A
N7
C8
N9
DG
DG
DG
10
10
10
N
3
-2.43
0.40
106.40
103.97
A
A
A
C8
N9
C4
DG
DG
DG
10
10
10
N
3
4.00
0.30
108.30
112.30
B
B
B
O4'
C1'
N1
DT
DT
DT
12
12
12
N
3
4.44
0.30
108.30
112.74
B
B
B
O4'
C1'
N9
DG
DG
DG
13
13
13
N
3
4.60
0.50
113.10
117.70
B
B
B
N7
C8
N9
DG
DG
DG
13
13
13
N
3
5.00
0.30
108.30
113.30
B
B
B
O4'
C1'
N9
DA
DA
DA
15
15
15
N
3
4.03
0.50
113.80
117.83
B
B
B
N7
C8
N9
DA
DA
DA
15
15
15
N
3
2.01
0.30
108.30
110.31
B
B
B
O4'
C1'
N1
DC
DC
DC
17
17
17
N
3
2.53
0.30
108.30
110.83
B
B
B
O4'
C1'
N1
DC
DC
DC
18
18
18
N
3
1.84
0.30
108.30
110.14
B
B
B
O4'
C1'
N9
DA
DA
DA
19
19
19
N
3
3.67
0.50
113.80
117.47
B
B
B
N7
C8
N9
DA
DA
DA
19
19
19
N
3
3.04
0.30
108.30
111.34
B
B
B
O4'
C1'
N9
DG
DG
DG
20
20
20
N
3
4.42
0.50
113.10
117.52
B
B
B
N7
C8
N9
DG
DG
DG
20
20
20
N
3
-2.41
0.40
106.40
103.99
B
B
B
C8
N9
C4
DG
DG
DG
20
20
20
N
4
2.05
0.30
108.30
110.35
A
A
A
O4'
C1'
N1
DC
DC
DC
1
1
1
N
4
4.05
0.30
108.30
112.35
A
A
A
O4'
C1'
N1
DT
DT
DT
2
2
2
N
4
4.71
0.30
108.30
113.01
A
A
A
O4'
C1'
N9
DG
DG
DG
3
3
3
N
4
4.74
0.50
113.10
117.84
A
A
A
N7
C8
N9
DG
DG
DG
3
3
3
N
4
-2.63
0.40
106.40
103.77
A
A
A
C8
N9
C4
DG
DG
DG
3
3
3
N
4
4.70
0.30
108.30
113.00
A
A
A
O4'
C1'
N9
DA
DA
DA
5
5
5
N
4
3.94
0.50
113.80
117.74
A
A
A
N7
C8
N9
DA
DA
DA
5
5
5
N
4
2.03
0.30
108.30
110.33
A
A
A
O4'
C1'
N1
DC
DC
DC
7
7
7
N
4
2.44
0.30
108.30
110.74
A
A
A
O4'
C1'
N1
DC
DC
DC
8
8
8
N
4
2.41
0.30
108.30
110.71
A
A
A
O4'
C1'
N9
DA
DA
DA
9
9
9
N
4
3.88
0.50
113.80
117.68
A
A
A
N7
C8
N9
DA
DA
DA
9
9
9
N
4
3.04
0.30
108.30
111.34
A
A
A
O4'
C1'
N9
DG
DG
DG
10
10
10
N
4
4.64
0.50
113.10
117.74
A
A
A
N7
C8
N9
DG
DG
DG
10
10
10
N
4
2.02
0.30
108.30
110.32
B
B
B
O4'
C1'
N1
DC
DC
DC
11
11
11
N
4
4.01
0.30
108.30
112.31
B
B
B
O4'
C1'
N1
DT
DT
DT
12
12
12
N
4
4.61
0.30
108.30
112.91
B
B
B
O4'
C1'
N9
DG
DG
DG
13
13
13
N
4
4.82
0.50
113.10
117.92
B
B
B
N7
C8
N9
DG
DG
DG
13
13
13
N
4
-2.67
0.40
106.40
103.73
B
B
B
C8
N9
C4
DG
DG
DG
13
13
13
N
4
4.67
0.30
108.30
112.97
B
B
B
O4'
C1'
N9
DA
DA
DA
15
15
15
N
4
3.92
0.50
113.80
117.72
B
B
B
N7
C8
N9
DA
DA
DA
15
15
15
N
4
1.94
0.30
108.30
110.24
B
B
B
O4'
C1'
N1
DC
DC
DC
17
17
17
N
4
2.51
0.30
108.30
110.81
B
B
B
O4'
C1'
N1
DC
DC
DC
18
18
18
N
4
2.33
0.30
108.30
110.63
B
B
B
O4'
C1'
N9
DA
DA
DA
19
19
19
N
4
3.83
0.50
113.80
117.63
B
B
B
N7
C8
N9
DA
DA
DA
19
19
19
N
4
2.92
0.30
108.30
111.22
B
B
B
O4'
C1'
N9
DG
DG
DG
20
20
20
N
4
4.65
0.50
113.10
117.75
B
B
B
N7
C8
N9
DG
DG
DG
20
20
20
N
4
-2.49
0.40
106.40
103.91
B
B
B
C8
N9
C4
DG
DG
DG
20
20
20
N
5
1.84
0.30
108.30
110.14
A
A
A
O4'
C1'
N1
DC
DC
DC
1
1
1
N
5
4.07
0.30
108.30
112.37
A
A
A
O4'
C1'
N1
DT
DT
DT
2
2
2
N
5
4.24
0.30
108.30
112.54
A
A
A
O4'
C1'
N9
DG
DG
DG
3
3
3
N
5
4.63
0.50
113.10
117.73
A
A
A
N7
C8
N9
DG
DG
DG
3
3
3
N
5
-2.45
0.40
106.40
103.95
A
A
A
C8
N9
C4
DG
DG
DG
3
3
3
N
5
4.14
0.30
108.30
112.44
A
A
A
O4'
C1'
N9
DA
DA
DA
5
5
5
N
5
4.11
0.50
113.80
117.91
A
A
A
N7
C8
N9
DA
DA
DA
5
5
5
N
5
2.31
0.30
108.30
110.61
A
A
A
O4'
C1'
N1
DC
DC
DC
7
7
7
N
5
2.98
0.30
108.30
111.28
A
A
A
O4'
C1'
N1
DC
DC
DC
8
8
8
N
5
2.21
0.30
108.30
110.51
A
A
A
O4'
C1'
N9
DA
DA
DA
9
9
9
N
5
3.83
0.50
113.80
117.63
A
A
A
N7
C8
N9
DA
DA
DA
9
9
9
N
5
2.56
0.30
108.30
110.86
A
A
A
O4'
C1'
N9
DG
DG
DG
10
10
10
N
5
4.61
0.50
113.10
117.71
A
A
A
N7
C8
N9
DG
DG
DG
10
10
10
N
5
1.84
0.30
108.30
110.14
B
B
B
O4'
C1'
N1
DC
DC
DC
11
11
11
N
5
4.19
0.30
108.30
112.49
B
B
B
O4'
C1'
N1
DT
DT
DT
12
12
12
N
5
4.15
0.30
108.30
112.45
B
B
B
O4'
C1'
N9
DG
DG
DG
13
13
13
N
5
4.59
0.50
113.10
117.69
B
B
B
N7
C8
N9
DG
DG
DG
13
13
13
N
5
4.24
0.30
108.30
112.54
B
B
B
O4'
C1'
N9
DA
DA
DA
15
15
15
N
5
4.11
0.50
113.80
117.91
B
B
B
N7
C8
N9
DA
DA
DA
15
15
15
N
5
2.28
0.30
108.30
110.58
B
B
B
O4'
C1'
N1
DC
DC
DC
17
17
17
N
5
2.98
0.30
108.30
111.28
B
B
B
O4'
C1'
N1
DC
DC
DC
18
18
18
N
5
2.16
0.30
108.30
110.46
B
B
B
O4'
C1'
N9
DA
DA
DA
19
19
19
N
5
3.74
0.50
113.80
117.54
B
B
B
N7
C8
N9
DA
DA
DA
19
19
19
N
5
2.52
0.30
108.30
110.82
B
B
B
O4'
C1'
N9
DG
DG
DG
20
20
20
N
5
4.58
0.50
113.10
117.68
B
B
B
N7
C8
N9
DG
DG
DG
20
20
20
N
5
-2.43
0.40
106.40
103.97
B
B
B
C8
N9
C4
DG
DG
DG
20
20
20
N
6
3.62
0.30
108.30
111.92
A
A
A
O4'
C1'
N1
DT
DT
DT
2
2
2
N
6
3.89
0.30
108.30
112.19
A
A
A
O4'
C1'
N9
DG
DG
DG
3
3
3
N
6
4.49
0.50
113.10
117.59
A
A
A
N7
C8
N9
DG
DG
DG
3
3
3
N
6
-2.41
0.40
106.40
103.99
A
A
A
C8
N9
C4
DG
DG
DG
3
3
3
N
6
3.20
0.30
108.30
111.50
A
A
A
O4'
C1'
N9
DA
DA
DA
5
5
5
N
6
4.17
0.50
113.80
117.97
A
A
A
N7
C8
N9
DA
DA
DA
5
5
5
N
6
2.24
0.30
108.30
110.54
A
A
A
O4'
C1'
N1
DC
DC
DC
7
7
7
N
6
1.91
0.30
108.30
110.21
A
A
A
O4'
C1'
N1
DC
DC
DC
8
8
8
N
6
2.48
0.30
108.30
110.78
A
A
A
O4'
C1'
N9
DA
DA
DA
9
9
9
N
6
3.81
0.50
113.80
117.61
A
A
A
N7
C8
N9
DA
DA
DA
9
9
9
N
6
3.30
0.30
108.30
111.60
A
A
A
O4'
C1'
N9
DG
DG
DG
10
10
10
N
6
4.64
0.50
113.10
117.74
A
A
A
N7
C8
N9
DG
DG
DG
10
10
10
N
6
-2.41
0.40
106.40
103.99
A
A
A
C8
N9
C4
DG
DG
DG
10
10
10
N
6
3.63
0.30
108.30
111.93
B
B
B
O4'
C1'
N1
DT
DT
DT
12
12
12
N
6
3.86
0.30
108.30
112.16
B
B
B
O4'
C1'
N9
DG
DG
DG
13
13
13
N
6
4.46
0.50
113.10
117.56
B
B
B
N7
C8
N9
DG
DG
DG
13
13
13
N
6
-2.40
0.40
106.40
104.00
B
B
B
C8
N9
C4
DG
DG
DG
13
13
13
N
6
3.10
0.30
108.30
111.40
B
B
B
O4'
C1'
N9
DA
DA
DA
15
15
15
N
6
4.25
0.50
113.80
118.05
B
B
B
N7
C8
N9
DA
DA
DA
15
15
15
N
6
2.19
0.30
108.30
110.49
B
B
B
O4'
C1'
N1
DC
DC
DC
17
17
17
N
6
1.92
0.30
108.30
110.22
B
B
B
O4'
C1'
N1
DC
DC
DC
18
18
18
N
6
2.44
0.30
108.30
110.74
B
B
B
O4'
C1'
N9
DA
DA
DA
19
19
19
N
6
3.79
0.50
113.80
117.59
B
B
B
N7
C8
N9
DA
DA
DA
19
19
19
N
6
3.24
0.30
108.30
111.54
B
B
B
O4'
C1'
N9
DG
DG
DG
20
20
20
N
6
4.55
0.50
113.10
117.65
B
B
B
N7
C8
N9
DG
DG
DG
20
20
20
N
6
-2.50
0.40
106.40
103.90
B
B
B
C8
N9
C4
DG
DG
DG
20
20
20
N
model building
X-PLOR
3.1
refinement
X-PLOR
3.1
phasing
X-PLOR
3.1
SOLUTION STRUCTURE OF A DNA DECAMER CONTAINING THE ANTIVIRAL DRUG GANCICLOVIR: COMBINED USE OF NMR, RESTRAINED MOLECULAR DYNAMICS, AND FULL RELAXATION REFINEMENT, 6 STRUCTURES
1
N
N
1
N
N
covale
1.621
both
A
DG
3
A
O3'
DG
3
1_555
A
LGP
4
A
P
LGP
4
1_555
covale
1.607
both
A
LGP
4
A
O3'
LGP
4
1_555
A
DA
5
A
P
DA
5
1_555
covale
1.621
both
B
DG
13
B
O3'
DG
3
1_555
B
LGP
14
B
P
LGP
4
1_555
covale
1.607
both
B
LGP
14
B
O3'
LGP
4
1_555
B
DA
15
B
P
DA
5
1_555
hydrog
WATSON-CRICK
A
DC
1
A
N3
DC
1
1_555
B
DG
20
B
N1
DG
10
1_555
hydrog
WATSON-CRICK
A
DC
1
A
N4
DC
1
1_555
B
DG
20
B
O6
DG
10
1_555
hydrog
WATSON-CRICK
A
DC
1
A
O2
DC
1
1_555
B
DG
20
B
N2
DG
10
1_555
hydrog
WATSON-CRICK
A
DT
2
A
N3
DT
2
1_555
B
DA
19
B
N1
DA
9
1_555
hydrog
WATSON-CRICK
A
DT
2
A
O4
DT
2
1_555
B
DA
19
B
N6
DA
9
1_555
hydrog
WATSON-CRICK
A
DG
3
A
N1
DG
3
1_555
B
DC
18
B
N3
DC
8
1_555
hydrog
WATSON-CRICK
A
DG
3
A
N2
DG
3
1_555
B
DC
18
B
O2
DC
8
1_555
hydrog
WATSON-CRICK
A
DG
3
A
O6
DG
3
1_555
B
DC
18
B
N4
DC
8
1_555
hydrog
WATSON-CRICK
A
LGP
4
A
N1
LGP
4
1_555
B
DC
17
B
N3
DC
7
1_555
hydrog
WATSON-CRICK
A
LGP
4
A
N2
LGP
4
1_555
B
DC
17
B
O2
DC
7
1_555
hydrog
WATSON-CRICK
A
LGP
4
A
O6
LGP
4
1_555
B
DC
17
B
N4
DC
7
1_555
hydrog
WATSON-CRICK
A
DA
5
A
N1
DA
5
1_555
B
DT
16
B
N3
DT
6
1_555
hydrog
WATSON-CRICK
A
DA
5
A
N6
DA
5
1_555
B
DT
16
B
O4
DT
6
1_555
hydrog
WATSON-CRICK
A
DT
6
A
N3
DT
6
1_555
B
DA
15
B
N1
DA
5
1_555
hydrog
WATSON-CRICK
A
DT
6
A
O4
DT
6
1_555
B
DA
15
B
N6
DA
5
1_555
hydrog
WATSON-CRICK
A
DC
7
A
N3
DC
7
1_555
B
LGP
14
B
N1
LGP
4
1_555
hydrog
WATSON-CRICK
A
DC
7
A
N4
DC
7
1_555
B
LGP
14
B
O6
LGP
4
1_555
hydrog
WATSON-CRICK
A
DC
7
A
O2
DC
7
1_555
B
LGP
14
B
N2
LGP
4
1_555
hydrog
WATSON-CRICK
A
DC
8
A
N3
DC
8
1_555
B
DG
13
B
N1
DG
3
1_555
hydrog
WATSON-CRICK
A
DC
8
A
N4
DC
8
1_555
B
DG
13
B
O6
DG
3
1_555
hydrog
WATSON-CRICK
A
DC
8
A
O2
DC
8
1_555
B
DG
13
B
N2
DG
3
1_555
hydrog
WATSON-CRICK
A
DA
9
A
N1
DA
9
1_555
B
DT
12
B
N3
DT
2
1_555
hydrog
WATSON-CRICK
A
DA
9
A
N6
DA
9
1_555
B
DT
12
B
O4
DT
2
1_555
hydrog
WATSON-CRICK
A
DG
10
A
N1
DG
10
1_555
B
DC
11
B
N3
DC
1
1_555
hydrog
WATSON-CRICK
A
DG
10
A
N2
DG
10
1_555
B
DC
11
B
O2
DC
1
1_555
hydrog
WATSON-CRICK
A
DG
10
A
O6
DG
10
1_555
B
DC
11
B
N4
DC
1
1_555
DNA
DNA DECAMER, DEOXYRIBONUCLEIC ACID, DNA
1AC9
PDB
1
1AC9
1
10
1AC9
1
10
1AC9
A
1
1
10
11
20
1AC9
11
20
1AC9
B
1
1
10
1
P 1