0.011148 0.000000 0.000000 0.000000 0.006494 0.000000 0.000000 0.000000 0.008203 0.00000 0.00000 0.00000 CIS PROLINE - PRO L 8 CIS PROLINE - PRO L 77 CIS PROLINE - PRO L 95 CIS PROLINE - PRO L 141 CIS PROLINE - PRO H 149 CIS PROLINE - PRO H 151 CIS PROLINE - PRO H 200 Ghiara, J.B. Wilson, I.A. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 8 90.00 90.00 90.00 89.700 154.000 121.900 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking US Science SCIEAS 0038 0036-8075 264 82 85 7511253 Crystal structure of the principal neutralization site of HIV-1. 1994 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 1 x-ray 1 1.0 23675.107 IGG1-KAPPA 59.1 FAB (LIGHT CHAIN) 1 man polymer 24208.383 IGG1-KAPPA 59.1 FAB (HEAVY CHAIN) 1 man polymer 2814.339 HIV-1 GP120 (MN ISOLATE) FRAGMENT (RESIDUES 308 - 332) 1 man polymer no no DIVMTQSPASLVVSLGQRATISCRASESVDSYGKSFMHWYQQKPGQPPKVLIYIASNLESGVPARFSGSGSRTDFTLTID PVEADDAATYYCQQNNEDPPTFGAGTKLEMRRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQ NGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNR DIVMTQSPASLVVSLGQRATISCRASESVDSYGKSFMHWYQQKPGQPPKVLIYIASNLESGVPARFSGSGSRTDFTLTID PVEADDAATYYCQQNNEDPPTFGAGTKLEMRRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQ NGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNR L polypeptide(L) no no QVKLQESGPAVIKPSQSLSLTCIVSGFSITRTNYCWHWIRQAPGKGLEWMGRICYEGSIYYSPSIKSRSTISRDTSLNKF FIQLISVTNEDTAMYYCSRENHMYETYFDVWGQGTTVTVSSAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTV TWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSPRPSETVTCNVAHPASSTKVDKKIVPR QVKLQESGPAVIKPSQSLSLTCIVSGFSITRTNYCWHWIRQAPGKGLEWMGRICYEGSIYYSPSIKSRSTISRDTSLNKF FIQLISVTNEDTAMYYCSRENHMYETYFDVWGQGTTVTVSSAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTV TWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSPRPSETVTCNVAHPASSTKVDKKIVPR H polypeptide(L) no no YNKRKRIHIGPGRAFYTTKNIIGC YNKRKRIHIGPGRAFYTTKNIIGC P polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n house mouse Mus sample 10090 Mus musculus house mouse Mus sample 10090 Mus musculus Lentivirus Human immunodeficiency virus 1 sample 11696 HIV-1 M:B_MN 4.15 70.36 repository Initial release Version format compliance Version format compliance 1 0 1994-07-31 1 1 2008-03-25 1 2 2011-07-13 Y 1994-02-10 REL THE PEPTIDE USED WAS A SYNTHETIC HOMOLOGUE OF RESIDUES 308 - 332 OF HIV-1 GP120 (MN STRAIN), WITH AN ADDITIONAL CYS AT THE C-TERMINAL END. THE FAB FRAGMENT IS NUMBERED ACCORDING TO THE CONVENTION OF E. KABAT (E.A. KABAT, T.T. WU, M. REID-MILLER, H.M. PERRY, K.S. GOTTESMAN, SEQUENCES OF PROTEINS OF IMMUNOLOGICAL INTEREST, 4TH ED., (1987), NATIONAL INSTITUTE OF HEALTH, BETHESDA, MD. THE PEPTIDE IS NUMBERED ACCORDING TO THE BH10 ISOLATE SEQUENCE (L. RATNER, W. HASELTINE, R. PATARCA, K.J. LIVAK, B. STARCICH, S.F. JOSEPHS, E.R. DORAN, J.A. RAFALSKI, E.A. WHITEHORN, K. BAUMEISTER, L. IVANOFF, S.R. PETTEWAY JR., M.L. PEARSON, J.A. LAUTENBERGER, T.S. PAPAS, J. GHRAYEB, N.T. CHANG, R.C. GALLO, F. WONG-STAAL (1985) NATURE V. 313, 277-284.) ASP 1 n 1 ASP 1 L ILE 2 n 2 ILE 2 L VAL 3 n 3 VAL 3 L MET 4 n 4 MET 4 L THR 5 n 5 THR 5 L GLN 6 n 6 GLN 6 L SER 7 n 7 SER 7 L PRO 8 n 8 PRO 8 L ALA 9 n 9 ALA 9 L SER 10 n 10 SER 10 L LEU 11 n 11 LEU 11 L VAL 12 n 12 VAL 12 L VAL 13 n 13 VAL 13 L SER 14 n 14 SER 14 L LEU 15 n 15 LEU 15 L GLY 16 n 16 GLY 16 L GLN 17 n 17 GLN 17 L ARG 18 n 18 ARG 18 L ALA 19 n 19 ALA 19 L THR 20 n 20 THR 20 L ILE 21 n 21 ILE 21 L SER 22 n 22 SER 22 L CYS 23 n 23 CYS 23 L ARG 24 n 24 ARG 24 L ALA 25 n 25 ALA 25 L SER 26 n 26 SER 26 L GLU 27 n 27 GLU 27 L SER 27 n 28 A SER 27 L VAL 27 n 29 B VAL 27 L ASP 27 n 30 C ASP 27 L SER 27 n 31 D SER 27 L TYR 28 n 32 TYR 28 L GLY 29 n 33 GLY 29 L LYS 30 n 34 LYS 30 L SER 31 n 35 SER 31 L PHE 32 n 36 PHE 32 L MET 33 n 37 MET 33 L HIS 34 n 38 HIS 34 L TRP 35 n 39 TRP 35 L TYR 36 n 40 TYR 36 L GLN 37 n 41 GLN 37 L GLN 38 n 42 GLN 38 L LYS 39 n 43 LYS 39 L PRO 40 n 44 PRO 40 L GLY 41 n 45 GLY 41 L GLN 42 n 46 GLN 42 L PRO 43 n 47 PRO 43 L PRO 44 n 48 PRO 44 L LYS 45 n 49 LYS 45 L VAL 46 n 50 VAL 46 L LEU 47 n 51 LEU 47 L ILE 48 n 52 ILE 48 L TYR 49 n 53 TYR 49 L ILE 50 n 54 ILE 50 L ALA 51 n 55 ALA 51 L SER 52 n 56 SER 52 L ASN 53 n 57 ASN 53 L LEU 54 n 58 LEU 54 L GLU 55 n 59 GLU 55 L SER 56 n 60 SER 56 L GLY 57 n 61 GLY 57 L VAL 58 n 62 VAL 58 L PRO 59 n 63 PRO 59 L ALA 60 n 64 ALA 60 L ARG 61 n 65 ARG 61 L PHE 62 n 66 PHE 62 L SER 63 n 67 SER 63 L GLY 64 n 68 GLY 64 L SER 65 n 69 SER 65 L GLY 66 n 70 GLY 66 L SER 67 n 71 SER 67 L ARG 68 n 72 ARG 68 L THR 69 n 73 THR 69 L ASP 70 n 74 ASP 70 L PHE 71 n 75 PHE 71 L THR 72 n 76 THR 72 L LEU 73 n 77 LEU 73 L THR 74 n 78 THR 74 L ILE 75 n 79 ILE 75 L ASP 76 n 80 ASP 76 L PRO 77 n 81 PRO 77 L VAL 78 n 82 VAL 78 L GLU 79 n 83 GLU 79 L ALA 80 n 84 ALA 80 L ASP 81 n 85 ASP 81 L ASP 82 n 86 ASP 82 L ALA 83 n 87 ALA 83 L ALA 84 n 88 ALA 84 L THR 85 n 89 THR 85 L TYR 86 n 90 TYR 86 L TYR 87 n 91 TYR 87 L CYS 88 n 92 CYS 88 L GLN 89 n 93 GLN 89 L GLN 90 n 94 GLN 90 L ASN 91 n 95 ASN 91 L ASN 92 n 96 ASN 92 L GLU 93 n 97 GLU 93 L ASP 94 n 98 ASP 94 L PRO 95 n 99 PRO 95 L PRO 96 n 100 PRO 96 L THR 97 n 101 THR 97 L PHE 98 n 102 PHE 98 L GLY 99 n 103 GLY 99 L ALA 100 n 104 ALA 100 L GLY 101 n 105 GLY 101 L THR 102 n 106 THR 102 L LYS 103 n 107 LYS 103 L LEU 104 n 108 LEU 104 L GLU 105 n 109 GLU 105 L MET 106 n 110 MET 106 L ARG 107 n 111 ARG 107 L ARG 108 n 112 ARG 108 L ALA 109 n 113 ALA 109 L ASP 110 n 114 ASP 110 L ALA 111 n 115 ALA 111 L ALA 112 n 116 ALA 112 L PRO 113 n 117 PRO 113 L THR 114 n 118 THR 114 L VAL 115 n 119 VAL 115 L SER 116 n 120 SER 116 L ILE 117 n 121 ILE 117 L PHE 118 n 122 PHE 118 L PRO 119 n 123 PRO 119 L PRO 120 n 124 PRO 120 L SER 121 n 125 SER 121 L SER 122 n 126 SER 122 L GLU 123 n 127 GLU 123 L GLN 124 n 128 GLN 124 L LEU 125 n 129 LEU 125 L THR 126 n 130 THR 126 L SER 127 n 131 SER 127 L GLY 128 n 132 GLY 128 L GLY 129 n 133 GLY 129 L ALA 130 n 134 ALA 130 L SER 131 n 135 SER 131 L VAL 132 n 136 VAL 132 L VAL 133 n 137 VAL 133 L CYS 134 n 138 CYS 134 L PHE 135 n 139 PHE 135 L LEU 136 n 140 LEU 136 L ASN 137 n 141 ASN 137 L ASN 138 n 142 ASN 138 L PHE 139 n 143 PHE 139 L TYR 140 n 144 TYR 140 L PRO 141 n 145 PRO 141 L LYS 142 n 146 LYS 142 L ASP 143 n 147 ASP 143 L ILE 144 n 148 ILE 144 L ASN 145 n 149 ASN 145 L VAL 146 n 150 VAL 146 L LYS 147 n 151 LYS 147 L TRP 148 n 152 TRP 148 L LYS 149 n 153 LYS 149 L ILE 150 n 154 ILE 150 L ASP 151 n 155 ASP 151 L GLY 152 n 156 GLY 152 L SER 153 n 157 SER 153 L GLU 154 n 158 GLU 154 L ARG 155 n 159 ARG 155 L GLN 156 n 160 GLN 156 L ASN 157 n 161 ASN 157 L GLY 158 n 162 GLY 158 L VAL 159 n 163 VAL 159 L LEU 160 n 164 LEU 160 L ASN 161 n 165 ASN 161 L SER 162 n 166 SER 162 L TRP 163 n 167 TRP 163 L THR 164 n 168 THR 164 L ASP 165 n 169 ASP 165 L GLN 166 n 170 GLN 166 L ASP 167 n 171 ASP 167 L SER 168 n 172 SER 168 L LYS 169 n 173 LYS 169 L ASP 170 n 174 ASP 170 L SER 171 n 175 SER 171 L THR 172 n 176 THR 172 L TYR 173 n 177 TYR 173 L SER 174 n 178 SER 174 L MET 175 n 179 MET 175 L SER 176 n 180 SER 176 L SER 177 n 181 SER 177 L THR 178 n 182 THR 178 L LEU 179 n 183 LEU 179 L THR 180 n 184 THR 180 L LEU 181 n 185 LEU 181 L THR 182 n 186 THR 182 L LYS 183 n 187 LYS 183 L ASP 184 n 188 ASP 184 L GLU 185 n 189 GLU 185 L TYR 186 n 190 TYR 186 L GLU 187 n 191 GLU 187 L ARG 188 n 192 ARG 188 L HIS 189 n 193 HIS 189 L ASN 190 n 194 ASN 190 L SER 191 n 195 SER 191 L TYR 192 n 196 TYR 192 L THR 193 n 197 THR 193 L CYS 194 n 198 CYS 194 L GLU 195 n 199 GLU 195 L ALA 196 n 200 ALA 196 L THR 197 n 201 THR 197 L HIS 198 n 202 HIS 198 L LYS 199 n 203 LYS 199 L THR 200 n 204 THR 200 L SER 201 n 205 SER 201 L THR 202 n 206 THR 202 L SER 203 n 207 SER 203 L PRO 204 n 208 PRO 204 L ILE 205 n 209 ILE 205 L VAL 206 n 210 VAL 206 L LYS 207 n 211 LYS 207 L SER 208 n 212 SER 208 L PHE 209 n 213 PHE 209 L ASN 210 n 214 ASN 210 L ARG 211 n 215 ARG 211 L GLN 1 n 1 GLN 1 H VAL 2 n 2 VAL 2 H LYS 3 n 3 LYS 3 H LEU 4 n 4 LEU 4 H GLN 5 n 5 GLN 5 H GLU 6 n 6 GLU 6 H SER 7 n 7 SER 7 H GLY 8 n 8 GLY 8 H PRO 9 n 9 PRO 9 H ALA 10 n 10 ALA 10 H VAL 11 n 11 VAL 11 H ILE 12 n 12 ILE 12 H LYS 13 n 13 LYS 13 H PRO 14 n 14 PRO 14 H SER 15 n 15 SER 15 H GLN 16 n 16 GLN 16 H SER 17 n 17 SER 17 H LEU 18 n 18 LEU 18 H SER 19 n 19 SER 19 H LEU 20 n 20 LEU 20 H THR 21 n 21 THR 21 H CYS 22 n 22 CYS 22 H ILE 23 n 23 ILE 23 H VAL 24 n 24 VAL 24 H SER 25 n 25 SER 25 H GLY 26 n 26 GLY 26 H PHE 27 n 27 PHE 27 H SER 28 n 28 SER 28 H ILE 29 n 29 ILE 29 H THR 30 n 30 THR 30 H ARG 31 n 31 ARG 31 H THR 32 n 32 THR 32 H ASN 33 n 33 ASN 33 H TYR 34 n 34 TYR 34 H CYS 35 n 35 CYS 35 H TRP 35 n 36 A TRP 35 H HIS 35 n 37 B HIS 35 H TRP 36 n 38 TRP 36 H ILE 37 n 39 ILE 37 H ARG 38 n 40 ARG 38 H GLN 39 n 41 GLN 39 H ALA 40 n 42 ALA 40 H PRO 41 n 43 PRO 41 H GLY 42 n 44 GLY 42 H LYS 43 n 45 LYS 43 H GLY 44 n 46 GLY 44 H LEU 45 n 47 LEU 45 H GLU 46 n 48 GLU 46 H TRP 47 n 49 TRP 47 H MET 48 n 50 MET 48 H GLY 49 n 51 GLY 49 H ARG 50 n 52 ARG 50 H ILE 51 n 53 ILE 51 H CYS 52 n 54 CYS 52 H TYR 53 n 55 TYR 53 H GLU 54 n 56 GLU 54 H GLY 55 n 57 GLY 55 H SER 56 n 58 SER 56 H ILE 57 n 59 ILE 57 H TYR 58 n 60 TYR 58 H TYR 59 n 61 TYR 59 H SER 60 n 62 SER 60 H PRO 61 n 63 PRO 61 H SER 62 n 64 SER 62 H ILE 63 n 65 ILE 63 H LYS 64 n 66 LYS 64 H SER 65 n 67 SER 65 H ARG 66 n 68 ARG 66 H SER 67 n 69 SER 67 H THR 68 n 70 THR 68 H ILE 69 n 71 ILE 69 H SER 70 n 72 SER 70 H ARG 71 n 73 ARG 71 H ASP 72 n 74 ASP 72 H THR 73 n 75 THR 73 H SER 74 n 76 SER 74 H LEU 75 n 77 LEU 75 H ASN 76 n 78 ASN 76 H LYS 77 n 79 LYS 77 H PHE 78 n 80 PHE 78 H PHE 79 n 81 PHE 79 H ILE 80 n 82 ILE 80 H GLN 81 n 83 GLN 81 H LEU 82 n 84 LEU 82 H ILE 82 n 85 A ILE 82 H SER 82 n 86 B SER 82 H VAL 82 n 87 C VAL 82 H THR 83 n 88 THR 83 H ASN 84 n 89 ASN 84 H GLU 85 n 90 GLU 85 H ASP 86 n 91 ASP 86 H THR 87 n 92 THR 87 H ALA 88 n 93 ALA 88 H MET 89 n 94 MET 89 H TYR 90 n 95 TYR 90 H TYR 91 n 96 TYR 91 H CYS 92 n 97 CYS 92 H SER 93 n 98 SER 93 H ARG 94 n 99 ARG 94 H GLU 95 n 100 GLU 95 H ASN 96 n 101 ASN 96 H HIS 97 n 102 HIS 97 H MET 98 n 103 MET 98 H TYR 99 n 104 TYR 99 H GLU 100 n 105 GLU 100 H THR 100 n 106 A THR 100 H TYR 100 n 107 B TYR 100 H PHE 100 n 108 C PHE 100 H ASP 101 n 109 ASP 101 H VAL 102 n 110 VAL 102 H TRP 103 n 111 TRP 103 H GLY 104 n 112 GLY 104 H GLN 105 n 113 GLN 105 H GLY 106 n 114 GLY 106 H THR 107 n 115 THR 107 H THR 108 n 116 THR 108 H VAL 109 n 117 VAL 109 H THR 110 n 118 THR 110 H VAL 111 n 119 VAL 111 H SER 112 n 120 SER 112 H SER 113 n 121 SER 113 H ALA 114 n 122 ALA 114 H LYS 115 n 123 LYS 115 H THR 116 n 124 THR 116 H THR 117 n 125 THR 117 H PRO 118 n 126 PRO 118 H PRO 119 n 127 PRO 119 H SER 120 n 128 SER 120 H VAL 121 n 129 VAL 121 H TYR 122 n 130 TYR 122 H PRO 123 n 131 PRO 123 H LEU 124 n 132 LEU 124 H ALA 125 n 133 ALA 125 H PRO 126 n 134 PRO 126 H GLY 127 n 135 GLY 127 H SER 128 n 136 SER 128 H ALA 129 n 137 ALA 129 H ALA 130 n 138 ALA 130 H GLN 133 n 139 GLN 133 H THR 134 n 140 THR 134 H ASN 135 n 141 ASN 135 H SER 136 n 142 SER 136 H MET 137 n 143 MET 137 H VAL 138 n 144 VAL 138 H THR 139 n 145 THR 139 H LEU 140 n 146 LEU 140 H GLY 141 n 147 GLY 141 H CYS 142 n 148 CYS 142 H LEU 143 n 149 LEU 143 H VAL 144 n 150 VAL 144 H LYS 145 n 151 LYS 145 H GLY 146 n 152 GLY 146 H TYR 147 n 153 TYR 147 H PHE 148 n 154 PHE 148 H PRO 149 n 155 PRO 149 H GLU 150 n 156 GLU 150 H PRO 151 n 157 PRO 151 H VAL 152 n 158 VAL 152 H THR 153 n 159 THR 153 H VAL 154 n 160 VAL 154 H THR 156 n 161 THR 156 H TRP 157 n 162 TRP 157 H ASN 162 n 163 ASN 162 H SER 163 n 164 SER 163 H GLY 164 n 165 GLY 164 H SER 165 n 166 SER 165 H LEU 166 n 167 LEU 166 H SER 167 n 168 SER 167 H SER 168 n 169 SER 168 H GLY 169 n 170 GLY 169 H VAL 171 n 171 VAL 171 H HIS 172 n 172 HIS 172 H THR 173 n 173 THR 173 H PHE 174 n 174 PHE 174 H PRO 175 n 175 PRO 175 H ALA 176 n 176 ALA 176 H VAL 177 n 177 VAL 177 H LEU 178 n 178 LEU 178 H GLN 179 n 179 GLN 179 H SER 180 n 180 SER 180 H ASP 183 n 181 ASP 183 H LEU 184 n 182 LEU 184 H TYR 185 n 183 TYR 185 H THR 186 n 184 THR 186 H LEU 187 n 185 LEU 187 H SER 188 n 186 SER 188 H SER 189 n 187 SER 189 H SER 190 n 188 SER 190 H VAL 191 n 189 VAL 191 H THR 192 n 190 THR 192 H VAL 193 n 191 VAL 193 H PRO 194 n 192 PRO 194 H SER 195 n 193 SER 195 H SER 196 n 194 SER 196 H PRO 198 n 195 PRO 198 H ARG 199 n 196 ARG 199 H PRO 200 n 197 PRO 200 H SER 202 n 198 SER 202 H GLU 203 n 199 GLU 203 H THR 204 n 200 THR 204 H VAL 205 n 201 VAL 205 H THR 206 n 202 THR 206 H CYS 208 n 203 CYS 208 H ASN 209 n 204 ASN 209 H VAL 210 n 205 VAL 210 H ALA 211 n 206 ALA 211 H HIS 212 n 207 HIS 212 H PRO 213 n 208 PRO 213 H ALA 214 n 209 ALA 214 H SER 215 n 210 SER 215 H SER 216 n 211 SER 216 H THR 217 n 212 THR 217 H LYS 218 n 213 LYS 218 H VAL 219 n 214 VAL 219 H ASP 220 n 215 ASP 220 H LYS 221 n 216 LYS 221 H LYS 222 n 217 LYS 222 H ILE 223 n 218 ILE 223 H VAL 224 n 219 VAL 224 H PRO 225 n 220 PRO 225 H ARG 226 n 221 ARG 226 H n 1 308 P n 2 309 P n 3 310 P n 4 311 P n 5 312 P n 6 313 P n 7 314 P HIS 315 n 8 HIS 315 P ILE 316 n 9 ILE 316 P GLY 319 n 10 GLY 319 P PRO 320 n 11 PRO 320 P GLY 321 n 12 GLY 321 P ARG 322 n 13 ARG 322 P ALA 323 n 14 ALA 323 P PHE 324 n 15 PHE 324 P TYR 325 n 16 TYR 325 P THR 326 n 17 THR 326 P n 18 327 P n 19 328 P n 20 329 P n 21 330 P n 22 331 P n 23 332 P n 24 333 P author_and_software_defined_assembly PISA 3 trimeric 4520 -30 19390 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 L O SER 7 A O SER 7 L N SER 22 A N SER 22 L N CYS 23 A N CYS 23 L O PHE 71 A O PHE 75 L O THR 74 A O THR 78 L N SER 63 A N SER 67 L N LEU 11 A N LEU 11 L O LYS 103 A O LYS 107 L N LEU 104 A N LEU 108 L O ALA 84 A O ALA 88 L O GLN 89 A O GLN 93 L N HIS 34 A N HIS 38 L O GLN 37 A O GLN 41 L N LYS 45 A N LYS 49 L N TYR 49 A N TYR 53 L O ASN 53 A O ASN 57 L N LEU 11 A N LEU 11 L O LYS 103 A O LYS 107 L N LEU 104 A N LEU 108 L O ALA 84 A O ALA 88 L N GLN 90 A N GLN 94 L O THR 97 A O THR 101 L O PHE 118 A O PHE 122 L N VAL 133 A N VAL 137 L O PHE 139 A O PHE 143 L N TYR 173 A N TYR 177 L N THR 178 A N THR 182 L O LEU 160 A O LEU 164 L N LYS 149 A N LYS 153 L O THR 193 A O THR 197 L O HIS 198 A O HIS 202 L N SER 201 A N SER 205 H O SER 7 B O SER 7 H N THR 21 B N THR 21 H N CYS 22 B N CYS 22 H O PHE 78 B O PHE 80 H N GLN 81 B N GLN 83 H O THR 68 B O THR 70 H N TYR 58 B N TYR 60 H O ARG 50 B O ARG 52 H N GLN 39 B N GLN 41 H O MET 89 B O MET 94 H N TYR 58 B N TYR 60 H O ARG 50 B O ARG 52 H N GLN 39 B N GLN 41 H O MET 89 B O MET 94 H N TYR 90 B N TYR 95 H O THR 107 B O THR 115 H O THR 110 B O THR 118 H N ILE 12 B N ILE 12 H N LEU 124 B N LEU 132 H O GLY 141 B O GLY 147 H O TYR 147 B O TYR 153 H N TYR 185 B N TYR 183 H N SER 190 B N SER 188 H O HIS 172 B O HIS 172 H N THR 156 B N THR 161 H O ASN 209 B O ASN 204 H N HIS 212 B N HIS 207 H O THR 217 B O THR 212 1 P TYR 308 C TYR 1 1 Y 1 P ASN 309 C ASN 2 1 Y 1 P LYS 310 C LYS 3 1 Y 1 P ARG 311 C ARG 4 1 Y 1 P LYS 312 C LYS 5 1 Y 1 P ARG 313 C ARG 6 1 Y 1 P ILE 314 C ILE 7 1 Y 1 P THR 327 C THR 18 1 Y 1 P LYS 328 C LYS 19 1 Y 1 P ASN 329 C ASN 20 1 Y 1 P ILE 330 C ILE 21 1 Y 1 P ILE 331 C ILE 22 1 Y 1 P GLY 332 C GLY 23 1 Y 1 P CYS 333 C CYS 24 1 Y 1 H ARG 199 10.37 1 L ARG 211 0.134 SIDE CHAIN 1 15.72 2.30 115.30 131.02 L L L CA CB CG LEU LEU LEU 11 11 11 N 1 6.65 0.80 106.30 112.95 L L L CD1 CG CD2 TRP TRP TRP 35 35 35 N 1 -7.84 1.30 127.00 119.16 L L L CB CG CD1 TRP TRP TRP 35 35 35 N 1 -5.47 0.80 107.30 101.83 L L L CE2 CD2 CG TRP TRP TRP 35 35 35 N 1 3.52 0.50 120.30 123.82 L L L NE CZ NH1 ARG ARG ARG 61 61 61 N 1 13.64 2.20 113.40 127.04 L L L CA CB CG GLU GLU GLU 105 105 105 N 1 -11.05 1.80 110.60 99.55 L L L N CA CB MET MET MET 106 106 106 N 1 -22.72 3.00 112.40 89.68 L L L CB CG SD MET MET MET 106 106 106 N 1 -10.37 1.60 110.90 100.53 L L L CG1 CB CG2 VAL VAL VAL 133 133 133 N 1 6.91 0.80 106.30 113.21 L L L CD1 CG CD2 TRP TRP TRP 148 148 148 N 1 -6.21 0.80 107.30 101.09 L L L CE2 CD2 CG TRP TRP TRP 148 148 148 N 1 -15.13 2.20 117.20 102.07 L L L CA C N ARG ARG GLN 155 155 156 Y 1 6.98 0.80 106.30 113.28 L L L CD1 CG CD2 TRP TRP TRP 163 163 163 N 1 -6.17 0.80 107.30 101.13 L L L CE2 CD2 CG TRP TRP TRP 163 163 163 N 1 -4.00 0.60 121.00 117.00 L L L CB CG CD2 TYR TYR TYR 186 186 186 N 1 5.99 0.50 120.30 126.29 L L L NE CZ NH1 ARG ARG ARG 211 211 211 N 1 -9.06 0.50 120.30 111.24 L L L NE CZ NH2 ARG ARG ARG 211 211 211 N 1 9.02 1.10 114.20 123.22 H H H CA CB SG CYS CYS CYS 35 35 35 N A A A 1 5.72 0.80 106.30 112.02 H H H CD1 CG CD2 TRP TRP TRP 35 35 35 N B B B 1 -10.47 1.60 129.70 119.23 H H H CB CG CD2 HIS HIS HIS 35 35 35 N 1 5.18 0.80 106.30 111.48 H H H CD1 CG CD2 TRP TRP TRP 36 36 36 N 1 -5.34 0.80 107.30 101.96 H H H CE2 CD2 CG TRP TRP TRP 36 36 36 N 1 6.14 0.50 120.30 126.44 H H H NE CZ NH1 ARG ARG ARG 38 38 38 N 1 -3.39 0.50 120.30 116.91 H H H NE CZ NH2 ARG ARG ARG 38 38 38 N 1 7.09 0.80 106.30 113.39 H H H CD1 CG CD2 TRP TRP TRP 47 47 47 N 1 -5.81 0.80 107.30 101.49 H H H CE2 CD2 CG TRP TRP TRP 47 47 47 N 1 -13.68 1.90 111.00 97.32 H H H CA CB CG1 ILE ILE ILE 63 63 63 N 1 3.70 0.50 120.30 124.00 H H H NE CZ NH1 ARG ARG ARG 66 66 66 N 1 -3.13 0.50 120.30 117.17 H H H NE CZ NH2 ARG ARG ARG 66 66 66 N 1 3.40 0.50 120.30 123.70 H H H NE CZ NH1 ARG ARG ARG 71 71 71 N A A A 1 8.86 1.40 112.40 121.26 H H H CA CB CG2 THR THR THR 100 100 100 N 1 5.33 0.80 106.30 111.63 H H H CD1 CG CD2 TRP TRP TRP 103 103 103 N 1 -5.19 0.80 107.30 102.11 H H H CE2 CD2 CG TRP TRP TRP 103 103 103 N 1 -4.25 0.60 121.00 116.75 H H H CB CG CD2 TYR TYR TYR 147 147 147 N 1 -8.32 1.30 127.00 118.68 H H H CB CG CD1 TRP TRP TRP 157 157 157 N 1 -10.47 1.40 111.70 101.23 H H H CA N CD PRO PRO PRO 175 175 175 N 1 -12.00 1.90 111.40 99.40 H H H CB CA C VAL VAL VAL 191 191 191 N 1 9.73 1.50 119.30 129.03 H H H C N CA SER PRO PRO 196 198 198 Y 1 -15.68 2.10 128.40 112.72 H H H C N CD SER PRO PRO 196 198 198 Y 1 3.26 0.50 120.30 123.56 H H H NE CZ NH1 ARG ARG ARG 199 199 199 N 1 -4.20 0.50 120.30 116.10 H H H NE CZ NH2 ARG ARG ARG 199 199 199 N 1 -16.81 2.70 111.00 94.19 H H H N CA C ARG ARG ARG 199 199 199 N 1 L L NE2 CD2 HIS HIS 34 34 -0.079 0.011 1.373 1.294 N 1 L L NE2 CD2 HIS HIS 189 189 -0.074 0.011 1.373 1.299 N B B 1 H H NE2 CD2 HIS HIS 35 35 -0.091 0.011 1.373 1.282 N 1 H H CG CD2 TRP TRP 47 47 -0.102 0.017 1.432 1.330 N 1 H H NE2 CD2 HIS HIS 97 97 -0.067 0.011 1.373 1.306 N 1 H H NE2 CD2 HIS HIS 172 172 -0.069 0.011 1.373 1.304 N 1 H H NE2 CD2 HIS HIS 212 212 -0.067 0.011 1.373 1.306 N 1 L ILE 2 -28.74 126.90 1 L PHE 32 -91.52 57.28 1 L ILE 50 29.24 59.73 1 L ALA 51 64.72 -40.74 1 L ALA 60 -39.32 -32.69 1 L ARG 68 63.55 -74.05 1 L ASP 76 -161.24 119.56 1 L ALA 80 -22.93 -59.89 1 L ALA 83 -60.55 98.04 1 L ASN 91 -156.96 51.85 1 L SER 127 -79.93 27.44 1 L ASP 151 -26.23 84.62 1 L GLN 156 -24.49 -48.94 1 L THR 164 -59.99 174.89 1 L LYS 169 -134.37 -46.62 1 H SER 15 62.76 65.84 1 H PHE 27 -177.93 147.10 1 H ASN 33 87.11 -23.38 1 H TYR 53 -23.87 -43.51 1 H GLU 54 -90.91 33.45 1 H SER 62 110.70 -51.84 1 H ARG 66 -148.17 39.22 B 1 H SER 82 34.96 68.65 1 H GLU 100 -143.88 -33.56 1 H SER 128 32.29 52.92 1 H ASN 135 59.62 -139.34 1 H SER 180 47.25 86.01 1 H SER 196 -143.63 -48.31 1 P ARG 322 -19.22 -49.54 1 P PHE 324 -108.62 40.86 0.21 0.21 3.0 12.0 15181 1 0.0 3.0 12.0 0 3442 0 0 3442 0.018 3.8 model building X-PLOR refinement X-PLOR phasing X-PLOR IGG1 FAB FRAGMENT (59.1) COMPLEXED WITH HIV-1 GP120 (MN ISOLATE) FRAGMENT (RESIDUES 308 - 332) CRYSTAL STRUCTURE OF THE PRINCIPAL NEUTRALIZING SITE OF HIV-1 1 N N 2 N N 3 N N L GLU 79 A GLU 83 HELX_P L ALA 83 A ALA 87 5 1 5 L SER 121 A SER 125 HELX_P L SER 127 A SER 131 1 2 7 L LYS 183 A LYS 187 HELX_P L ARG 188 A ARG 192 1 3 6 H ILE 63 B ILE 65 HELX_P H SER 65 B SER 67 5 4 3 H THR 83 B THR 88 HELX_P H THR 87 B THR 92 5 5 5 H SER 163 B SER 164 HELX_P H SER 165 B SER 166 5 6 3 H PRO 213 B PRO 208 HELX_P H SER 216 B SER 211 5 7 4 P GLY 321 C GLY 12 HELX_P P TYR 325 C TYR 16 5 8 5 disulf 2.035 L CYS 23 A SG CYS 23 1_555 L CYS 88 A SG CYS 92 1_555 disulf 2.013 L CYS 134 A SG CYS 138 1_555 L CYS 194 A SG CYS 198 1_555 disulf 2.029 H CYS 22 B SG CYS 22 1_555 H CYS 92 B SG CYS 97 1_555 disulf 2.033 H CYS 35 B SG CYS 35 1_555 H CYS 52 B SG CYS 54 1_555 disulf 1.982 H CYS 142 B SG CYS 148 1_555 H CYS 208 B SG CYS 203 1_555 COMPLEX(ANTIBODY/HIV-1 FRAGMENT) COMPLEX(ANTIBODY-HIV-1 FRAGMENT), COMPLEX(ANTIBODY-HIV-1 FRAGMENT) complex L SER 7 A SER 7 1 L PRO 8 A PRO 8 -1.59 L ASP 76 A ASP 80 1 L PRO 77 A PRO 81 -0.25 L ASP 94 A ASP 98 1 L PRO 95 A PRO 99 -2.57 L TYR 140 A TYR 144 1 L PRO 141 A PRO 145 -1.38 H PHE 148 B PHE 154 1 H PRO 149 B PRO 155 -1.03 H GLU 150 B GLU 156 1 H PRO 151 B PRO 157 -0.81 H ARG 199 B ARG 196 1 H PRO 200 B PRO 197 -4.50 IGH1M_MOUSE UNP 2 1 P01869 ENV_HV1MN UNP 3 306 P05877 1ACY PDB 1 1ACY 1 100 1ACY 114 226 P01869 H 1 122 221 306 328 1ACY 308 332 P05877 P 2 1 23 1 211 1ACY 1 211 1ACY L 3 1 215 4 6 4 2 4 3 4 5 6 4 3 anti-parallel anti-parallel anti-parallel parallel anti-parallel anti-parallel anti-parallel anti-parallel parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel L MET 4 A MET 4 L SER 7 A SER 7 L ALA 19 A ALA 19 L ALA 25 A ALA 25 L ASP 70 A ASP 74 L ILE 75 A ILE 79 L PHE 62 A PHE 66 L SER 67 A SER 71 L SER 10 A SER 10 L SER 14 A SER 14 L THR 102 A THR 106 L ARG 107 A ARG 111 L ALA 84 A ALA 88 L GLN 90 A GLN 94 L MET 33 A MET 37 L GLN 38 A GLN 42 L LYS 45 A LYS 49 L TYR 49 A TYR 53 L ASN 53 A ASN 57 L LEU 54 A LEU 58 L SER 10 A SER 10 L SER 14 A SER 14 L THR 102 A THR 106 L ARG 107 A ARG 111 L ALA 84 A ALA 88 L GLN 90 A GLN 94 L THR 97 A THR 101 L PHE 98 A PHE 102 L LYS 30 A LYS 34 L SER 31 A SER 35 L THR 114 A THR 118 L PHE 118 A PHE 122 L GLY 129 A GLY 133 L PHE 139 A PHE 143 L TYR 173 A TYR 177 L THR 182 A THR 186 L VAL 159 A VAL 163 L TRP 163 A TRP 167 L ASN 145 A ASN 149 L ILE 150 A ILE 154 L SER 191 A SER 195 L HIS 198 A HIS 202 L SER 201 A SER 205 L ASN 210 A ASN 214 H LYS 3 B LYS 3 H SER 7 B SER 7 H LEU 18 B LEU 18 H SER 25 B SER 25 H LYS 77 B LYS 79 H LEU 82 B LEU 84 H SER 67 B SER 69 H ARG 71 B ARG 73 H ILE 57 B ILE 59 H TYR 59 B TYR 61 H LEU 45 B LEU 47 H CYS 52 B CYS 54 H TYR 34 B TYR 34 H GLN 39 B GLN 41 H ALA 88 B ALA 93 H ASN 96 B ASN 101 H ILE 57 B ILE 59 H TYR 59 B TYR 61 H LEU 45 B LEU 47 H CYS 52 B CYS 54 H TYR 34 B TYR 34 H GLN 39 B GLN 41 H ALA 88 B ALA 93 H ASN 96 B ASN 101 H THR 107 B THR 115 H VAL 111 B VAL 119 H VAL 11 B VAL 11 H ILE 12 B ILE 12 H SER 120 B SER 128 H LEU 124 B LEU 132 H MET 137 B MET 143 H TYR 147 B TYR 153 H TYR 185 B TYR 183 H PRO 194 B PRO 192 H HIS 172 B HIS 172 H LEU 178 B LEU 178 H THR 153 B THR 159 H TRP 157 B TRP 162 H THR 206 B THR 202 H HIS 212 B HIS 207 H THR 217 B THR 212 H LYS 222 B LYS 217 20 C 2 2 21