1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 Sorimachi, K. Le Gal-Coeffet, M.-F. Williamson, G. Archer, D.B. Williamson, M.P. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 1 90.00 90.00 90.00 1.000 1.000 1.000 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C6 H12 O6 180.156 alpha-D-glucopyranose D-saccharide, alpha linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking UK Structure STRUE6 2005 0969-2126 5 647 661 10.1016/S0969-2126(97)00220-7 9195884 Solution structure of the granular starch binding domain of Aspergillus niger glucoamylase bound to beta-cyclodextrin. 1997 UK J.Mol.Biol. JMOBAK 0070 0022-2836 259 970 Solution Structure of the Granular Starch Binding Domain of Glucoamylase from Aspergillus Niger by Nuclear Magnetic Resonance Spectroscopy 1996 IX Eur.J.Biochem. EJBCAI 0262 0014-2956 233 568 1H and 15N Assignments and Secondary Structure of the Starch-Binding Domain of Glucoamylase from Aspergillus Niger 1995 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 11884.820 GLUCOAMYLASE 3.2.1.3 STARCH-BINDING DOMAIN, RESIDUES 509 - 616 1 man polymer 1153.001 Cycloheptakis-(1-4)-(alpha-D-glucopyranose) 2 man branched 1,4-ALPHA-D-GLUCAN GLUCOHYDROLASE beta-cyclodextrin no no CTTPTAVAVTFDLTATTTYGENIYLVGSISQLGDWETSDGIALSADKYTSSDPLWYVTVTLPAGESFEYKFIRIESDDSV EWESDPNREYTVPQACGTSTATVTDTWR CTTPTAVAVTFDLTATTTYGENIYLVGSISQLGDWETSDGIALSADKYTSSDPLWYVTVTLPAGESFEYKFIRIESDDSV EWESDPNREYTVPQACGTSTATVTDTWR A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Aspergillus AB4.1 Aspergillus sample 5061 Aspergillus niger GLAA 5061 Aspergillus niger PIGF atom_site chem_comp entity entity_name_com pdbx_branch_scheme pdbx_chem_comp_identifier pdbx_database_status pdbx_entity_branch pdbx_entity_branch_descriptor pdbx_entity_branch_link pdbx_entity_branch_list pdbx_entity_nonpoly pdbx_molecule_features pdbx_nonpoly_scheme pdbx_struct_assembly pdbx_struct_oper_list struct_asym struct_conn struct_site struct_site_gen repository Initial release Carbohydrate remediation repository Remediation Version format compliance Version format compliance Atomic model Data collection Derived calculations Other Structure summary 1 0 1997-07-07 1 1 2008-03-24 1 2 2011-07-13 2 0 2020-07-29 _atom_site.auth_asym_id _atom_site.auth_seq_id _atom_site.label_asym_id _atom_site.pdbx_PDB_ins_code _chem_comp.name _chem_comp.type _entity.formula_weight _entity.pdbx_description _entity.pdbx_number_of_molecules _entity.type _pdbx_database_status.process_site _struct_conn.pdbx_dist_value _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id GLC 1 n B GLC 1 GLC 2 n B GLC 2 GLC 3 n B GLC 3 GLC 4 n B GLC 4 GLC 5 n B GLC 5 GLC 6 n B GLC 6 GLC 7 n B GLC 7 GLC 1 n C GLC 1 GLC 2 n C GLC 2 GLC 3 n C GLC 3 GLC 4 n C GLC 4 GLC 5 n C GLC 5 GLC 6 n C GLC 6 GLC 7 n C GLC 7 DGlcpa a-D-glucopyranose a-D-Glcp Glc Y BNL 1997-02-10 REL REL oligosaccharide WURCS=2.0/1,7,7/[a2122h-1a_1-5]/1-1-1-1-1-1-1/a1-g4_a4-b1_b4-c1_c4-d1_d4-e1_e4-f1_f4-g1 2 PDB2Glycan 1.1.0 WURCS C1 O4 GLC GLC 1 7 2 O1 HO4 sing C1 O4 GLC GLC 2 1 2 O1 HO4 sing C1 O4 GLC GLC 3 2 2 O1 HO4 sing C1 O4 GLC GLC 4 3 2 O1 HO4 sing C1 O4 GLC GLC 5 4 2 O1 HO4 sing C1 O4 GLC GLC 6 5 2 O1 HO4 sing C1 O4 GLC GLC 7 6 2 O1 HO4 sing n n n n n n n Drug delivery cyclic oligosaccharide beta-cyclodextrin Oligosaccharide RANDOM FROM 81 GOOD STRUCTURES 100 5 15N-EDITED TOCSY NOESY 5.7 310 K simulated annealing BRUNGER refinement X-PLOR 3.1 structure solution X-PLOR 500 Bruker AMX 500 CYS 509 n 1 CYS 509 A THR 510 n 2 THR 510 A THR 511 n 3 THR 511 A PRO 512 n 4 PRO 512 A THR 513 n 5 THR 513 A ALA 514 n 6 ALA 514 A VAL 515 n 7 VAL 515 A ALA 516 n 8 ALA 516 A VAL 517 n 9 VAL 517 A THR 518 n 10 THR 518 A PHE 519 n 11 PHE 519 A ASP 520 n 12 ASP 520 A LEU 521 n 13 LEU 521 A THR 522 n 14 THR 522 A ALA 523 n 15 ALA 523 A THR 524 n 16 THR 524 A THR 525 n 17 THR 525 A THR 526 n 18 THR 526 A TYR 527 n 19 TYR 527 A GLY 528 n 20 GLY 528 A GLU 529 n 21 GLU 529 A ASN 530 n 22 ASN 530 A ILE 531 n 23 ILE 531 A TYR 532 n 24 TYR 532 A LEU 533 n 25 LEU 533 A VAL 534 n 26 VAL 534 A GLY 535 n 27 GLY 535 A SER 536 n 28 SER 536 A ILE 537 n 29 ILE 537 A SER 538 n 30 SER 538 A GLN 539 n 31 GLN 539 A LEU 540 n 32 LEU 540 A GLY 541 n 33 GLY 541 A ASP 542 n 34 ASP 542 A TRP 543 n 35 TRP 543 A GLU 544 n 36 GLU 544 A THR 545 n 37 THR 545 A SER 546 n 38 SER 546 A ASP 547 n 39 ASP 547 A GLY 548 n 40 GLY 548 A ILE 549 n 41 ILE 549 A ALA 550 n 42 ALA 550 A LEU 551 n 43 LEU 551 A SER 552 n 44 SER 552 A ALA 553 n 45 ALA 553 A ASP 554 n 46 ASP 554 A LYS 555 n 47 LYS 555 A TYR 556 n 48 TYR 556 A THR 557 n 49 THR 557 A SER 558 n 50 SER 558 A SER 559 n 51 SER 559 A ASP 560 n 52 ASP 560 A PRO 561 n 53 PRO 561 A LEU 562 n 54 LEU 562 A TRP 563 n 55 TRP 563 A TYR 564 n 56 TYR 564 A VAL 565 n 57 VAL 565 A THR 566 n 58 THR 566 A VAL 567 n 59 VAL 567 A THR 568 n 60 THR 568 A LEU 569 n 61 LEU 569 A PRO 570 n 62 PRO 570 A ALA 571 n 63 ALA 571 A GLY 572 n 64 GLY 572 A GLU 573 n 65 GLU 573 A SER 574 n 66 SER 574 A PHE 575 n 67 PHE 575 A GLU 576 n 68 GLU 576 A TYR 577 n 69 TYR 577 A LYS 578 n 70 LYS 578 A PHE 579 n 71 PHE 579 A ILE 580 n 72 ILE 580 A ARG 581 n 73 ARG 581 A ILE 582 n 74 ILE 582 A GLU 583 n 75 GLU 583 A SER 584 n 76 SER 584 A ASP 585 n 77 ASP 585 A ASP 586 n 78 ASP 586 A SER 587 n 79 SER 587 A VAL 588 n 80 VAL 588 A GLU 589 n 81 GLU 589 A TRP 590 n 82 TRP 590 A GLU 591 n 83 GLU 591 A SER 592 n 84 SER 592 A ASP 593 n 85 ASP 593 A PRO 594 n 86 PRO 594 A ASN 595 n 87 ASN 595 A ARG 596 n 88 ARG 596 A GLU 597 n 89 GLU 597 A TYR 598 n 90 TYR 598 A THR 599 n 91 THR 599 A VAL 600 n 92 VAL 600 A PRO 601 n 93 PRO 601 A GLN 602 n 94 GLN 602 A ALA 603 n 95 ALA 603 A CYS 604 n 96 CYS 604 A GLY 605 n 97 GLY 605 A THR 606 n 98 THR 606 A SER 607 n 99 SER 607 A THR 608 n 100 THR 608 A ALA 609 n 101 ALA 609 A THR 610 n 102 THR 610 A VAL 611 n 103 VAL 611 A THR 612 n 104 THR 612 A ASP 613 n 105 ASP 613 A THR 614 n 106 THR 614 A TRP 615 n 107 TRP 615 A ARG 616 n 108 ARG 616 A author_defined_assembly 1 monomeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A O ALA 609 A O ALA 101 A N THR 518 A N THR 10 A O VAL 517 A O VAL 9 A N VAL 567 A N VAL 59 A O TYR 564 A O TYR 56 A N SER 552 A N SER 44 A O ILE 549 A O ILE 41 A N LEU 533 A N LEU 25 A O VAL 534 A O VAL 26 A N LYS 578 A N LYS 70 A O ARG 581 A O ARG 73 A N GLU 589 A N GLU 81 1 A A OG1 HG3 THR PRO 557 561 1.57 1 A A O O GLY LEU 535 540 2.14 3 A A O O GLY LEU 535 540 2.02 4 A A O O GLY LEU 535 540 1.99 5 A A O OH SER TYR 552 556 2.11 1 A ARG 581 0.184 SIDE CHAIN 1 A ARG 596 0.200 SIDE CHAIN 1 A ARG 616 0.283 SIDE CHAIN 2 A ARG 581 0.163 SIDE CHAIN 2 A ARG 596 0.247 SIDE CHAIN 2 A ARG 616 0.318 SIDE CHAIN 3 A ARG 581 0.122 SIDE CHAIN 3 A ARG 596 0.091 SIDE CHAIN 3 A ARG 616 0.261 SIDE CHAIN 4 A ARG 581 0.138 SIDE CHAIN 4 A ARG 596 0.300 SIDE CHAIN 4 A ARG 616 0.262 SIDE CHAIN 5 A ARG 581 0.317 SIDE CHAIN 5 A ARG 596 0.284 SIDE CHAIN 5 -3.73 0.60 121.00 117.27 A A A CB CG CD2 TYR TYR TYR 532 532 532 N 1 A THR 510 -143.48 18.35 1 A LEU 521 -162.13 119.47 1 A ALA 523 -149.72 12.35 1 A THR 524 49.69 161.14 1 A THR 525 -144.32 -155.36 1 A THR 526 -154.76 59.76 1 A TYR 527 37.64 29.56 1 A GLU 529 167.24 -178.71 1 A LEU 540 -98.39 32.27 1 A GLU 544 168.55 91.43 1 A ASP 547 -141.14 35.00 1 A TYR 556 -58.93 -131.04 1 A THR 557 -76.91 -153.82 1 A SER 559 -88.52 -75.99 1 A ASP 560 169.54 74.62 1 A TRP 563 42.65 81.14 1 A VAL 565 174.09 159.91 1 A THR 566 -159.25 89.75 1 A GLU 573 -162.50 -158.26 1 A ASP 586 52.66 74.67 1 A SER 587 -170.49 110.89 1 A TRP 590 -41.81 88.91 1 A GLU 591 -58.33 94.05 1 A PRO 594 -74.05 -165.94 1 A VAL 611 -160.11 66.23 1 A ASP 613 -163.90 -168.46 2 A THR 510 -135.47 -53.53 2 A LEU 521 -162.40 92.78 2 A ALA 523 -163.49 31.80 2 A THR 524 53.44 164.01 2 A GLU 529 172.68 159.24 2 A ASP 542 63.04 -5.49 2 A ASP 547 -146.67 40.03 2 A ALA 553 -154.48 82.12 2 A TYR 556 -45.25 164.55 2 A SER 558 -80.40 -107.73 2 A TRP 563 54.93 123.61 2 A TYR 564 -145.69 -158.83 2 A VAL 565 169.66 157.83 2 A THR 566 -158.35 89.15 2 A LEU 569 -160.93 94.73 2 A ALA 571 -162.26 -166.06 2 A GLU 573 -162.85 -156.39 2 A GLU 583 58.24 -5.10 2 A ASP 585 -125.90 -73.02 2 A ASP 586 -128.17 -62.47 2 A SER 587 -123.39 -133.89 2 A GLU 591 -100.27 -130.08 2 A SER 592 84.60 70.09 2 A ASN 595 -68.45 -174.66 2 A THR 606 -167.90 34.67 2 A VAL 611 -160.71 57.16 3 A THR 510 -137.54 -60.25 3 A PRO 512 -80.87 35.03 3 A ALA 523 -144.41 -137.60 3 A THR 524 164.58 116.25 3 A THR 525 -162.06 -162.67 3 A THR 526 -45.61 101.38 3 A TYR 527 -63.68 89.47 3 A GLU 529 -88.43 -158.72 3 A LEU 540 -119.00 63.97 3 A ASP 542 79.41 -26.88 3 A GLU 544 176.62 95.11 3 A ASP 547 -145.06 36.13 3 A ASP 554 -39.89 82.79 3 A TYR 556 -58.25 -165.91 3 A THR 557 -77.32 -112.03 3 A SER 558 -54.86 -110.46 3 A ASP 560 176.31 81.71 3 A TRP 563 43.99 149.27 3 A VAL 565 169.28 159.10 3 A THR 566 -160.61 76.06 3 A VAL 567 -102.67 -160.27 3 A LEU 569 -160.37 81.59 3 A ALA 571 -162.07 -67.74 3 A ASP 585 -110.71 -75.14 3 A ASP 586 -61.12 -97.34 3 A SER 587 -166.20 -145.91 3 A TRP 590 -54.16 91.46 3 A ASP 593 -90.52 -68.85 3 A TYR 598 -65.96 91.61 3 A PRO 601 -79.47 -168.62 3 A ALA 603 70.21 98.52 3 A THR 606 -105.89 -80.64 3 A VAL 611 -160.05 78.53 4 A THR 510 69.86 94.51 4 A THR 511 58.21 175.33 4 A PRO 512 -78.39 -83.29 4 A THR 513 -153.70 21.68 4 A LEU 521 -162.00 102.20 4 A ALA 523 -158.05 -139.96 4 A THR 525 -56.17 -158.09 4 A TYR 527 -35.74 -33.09 4 A GLU 529 173.22 142.50 4 A ASP 542 78.75 -31.35 4 A GLU 544 -172.92 91.39 4 A THR 545 -48.98 -16.46 4 A ASP 547 -151.14 49.59 4 A SER 552 -131.86 -101.50 4 A ASP 554 -36.49 87.85 4 A LYS 555 67.59 -85.20 4 A TYR 556 43.39 -125.59 4 A THR 557 -147.41 -128.95 4 A SER 558 -42.67 -99.07 4 A ASP 560 74.41 95.43 4 A TRP 563 31.18 101.60 4 A VAL 565 178.17 153.43 4 A THR 566 -160.10 84.27 4 A LEU 569 -160.37 79.46 4 A ALA 571 -164.45 -37.11 4 A GLU 573 -161.32 -133.82 4 A ASP 586 80.37 105.19 4 A TRP 590 -57.97 88.21 4 A GLU 591 -64.20 95.84 4 A PRO 601 -79.36 -168.93 4 A GLN 602 -56.53 179.63 4 A CYS 604 -65.03 96.12 4 A ALA 609 -140.24 -144.86 4 A VAL 611 -161.04 76.31 5 A THR 510 178.80 38.54 5 A THR 511 63.55 61.62 5 A ALA 523 -169.04 -144.75 5 A THR 524 173.84 114.62 5 A THR 525 -131.55 -149.88 5 A THR 526 -114.62 52.29 5 A TYR 527 37.04 36.13 5 A GLU 529 -63.73 -157.47 5 A SER 536 -82.69 47.10 5 A ASP 542 -49.07 -11.38 5 A GLU 544 172.45 94.20 5 A THR 545 -48.84 -16.71 5 A ASP 547 -141.34 45.00 5 A ILE 549 -156.59 82.51 5 A SER 552 -129.95 -96.54 5 A LYS 555 69.88 89.34 5 A THR 557 -164.87 -91.86 5 A SER 559 -152.31 -83.69 5 A ASP 560 -146.90 14.69 5 A TRP 563 33.39 101.03 5 A VAL 567 -123.63 -167.31 5 A LEU 569 -160.66 88.92 5 A ALA 571 -162.63 -163.99 5 A GLU 573 -163.84 -139.04 5 A ASP 586 57.42 84.11 5 A SER 587 -171.21 112.66 5 A GLU 589 -112.43 71.76 5 A TRP 590 -44.27 89.84 5 A GLU 591 -56.72 93.67 5 A ASP 593 -90.16 -65.79 5 A ARG 596 -160.14 -165.02 5 A TYR 598 177.92 100.56 5 A VAL 600 65.70 125.32 5 A PRO 601 -79.43 -169.06 5 A GLN 602 -77.89 -83.09 5 A ALA 603 60.44 173.02 5 A ALA 609 -137.81 -156.73 5 A VAL 611 -160.04 71.38 5 A ASP 613 -162.77 -164.92 model building X-PLOR refinement X-PLOR phasing X-PLOR GLUCOAMYLASE GLUCOAMYLASE, GRANULAR STARCH-BINDING DOMAIN COMPLEX WITH CYCLODEXTRIN, NMR, 5 STRUCTURES 1 Y N 2 N N 2 N N A THR 545 A THR 37 HELX_P A ASP 547 A ASP 39 5 1 3 disulf 2.020 A CYS 509 A SG CYS 1 1_555 A CYS 604 A SG CYS 96 1_555 covale 1.402 both B GLC 1 B O4 GLC 1_555 B GLC 2 B C1 GLC 1_555 covale 1.400 both B GLC 1 B C1 GLC 1_555 B GLC 7 B O4 GLC 1_555 covale 1.398 both B GLC 2 B O4 GLC 1_555 B GLC 3 B C1 GLC 1_555 covale 1.398 both B GLC 3 B O4 GLC 1_555 B GLC 4 B C1 GLC 1_555 covale 1.399 both B GLC 4 B O4 GLC 1_555 B GLC 5 B C1 GLC 1_555 covale 1.399 both B GLC 5 B O4 GLC 1_555 B GLC 6 B C1 GLC 1_555 covale 1.398 both B GLC 6 B O4 GLC 1_555 B GLC 7 B C1 GLC 1_555 covale 1.397 both C GLC 1 C O4 GLC 1_555 C GLC 2 C C1 GLC 1_555 covale 1.401 both C GLC 1 C C1 GLC 1_555 C GLC 7 C O4 GLC 1_555 covale 1.402 both C GLC 2 C O4 GLC 1_555 C GLC 3 C C1 GLC 1_555 covale 1.398 both C GLC 3 C O4 GLC 1_555 C GLC 4 C C1 GLC 1_555 covale 1.399 both C GLC 4 C O4 GLC 1_555 C GLC 5 C C1 GLC 1_555 covale 1.398 both C GLC 5 C O4 GLC 1_555 C GLC 6 C C1 GLC 1_555 covale 1.400 both C GLC 6 C O4 GLC 1_555 C GLC 7 C C1 GLC 1_555 POLYSACCHARIDE DEGRADATION HYDROLASE, STARCH BINDING DOMAIN, GLYCOSIDASE, POLYSACCHARIDE DEGRADATION, GLYCOPROTEIN, ALTERNATIVE SPLICING AMYG_ASPNG UNP 1 1 P04064 MSFRSLLALSGLVCTGLANVISKRATLDSWLSNEATVARTAILNNIGADGAWVSGADSGIVVASPSTDNPDYFYTWTRDS GLVLKTLVDLFRNGDTSLLSTIENYISAQAIVQGISNPSGDLSSGAGLGEPKFNVDETAYTGSWGRPQRDGPALRATAMI GFGQWLLDNGYTSTATDIVWPLVRNDLSYVAQYWNQTGYDLWEEVNGSSFFTIAVQHRALVEGSAFATAVGSSCSWCDSQ APEILCYLQSFWTGSFILANFDSSRSGKDANTLLGSIHTFDPEAACDDSTFQPCSPRALANHKEVVDSFRSIYTLNDGLS DSEAVAVGRYPEDTYYNGNPWFLCTLAAAEQLYDALYQWDKQGSLEVTDVSLDFFKALYSDAATGTYSSSSSTYSSIVDA VKTFADGFVSIVETHAASNGSMSEQYDKSDGEQLSARDLTWSYAALLTANNRRNSVVPASWGETSASSVPGTCAATSAIG TYSSVTVTSWPSIVATGGTTTTATPTGSGSVTSTSKTTATASKTSTSTSSTSCTTPTAVAVTFDLTATTTYGENIYLVGS ISQLGDWETSDGIALSADKYTSSDPLWYVTVTLPAGESFEYKFIRIESDDSVEWESDPNREYTVPQACGTSTATVTDTWR 533 640 1ACZ 509 616 P04064 A 1 1 108 7 parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel A SER 607 A SER 99 A TRP 615 A TRP 107 A THR 513 A THR 5 A ALA 523 A ALA 15 A PRO 561 A PRO 53 A ALA 571 A ALA 63 A ILE 549 A ILE 41 A SER 552 A SER 44 A ASN 530 A ASN 22 A SER 536 A SER 28 A GLU 573 A GLU 65 A ILE 582 A ILE 74 A GLU 589 A GLU 81 A GLU 591 A GLU 83 1 P 1