0.009259
0.000000
0.000000
0.000000
0.012937
0.000000
0.000000
0.000000
0.019305
0.00000
0.00000
0.00000
Musah, R.A.
Jensen, G.M.
Fitzgerald, M.M.
Mcree, D.E.
Goodin, D.B.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.00
90.00
90.00
108.000
77.300
51.800
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C34 H32 Fe N4 O4
616.487
PROTOPORPHYRIN IX CONTAINING FE
HEME
non-polymer
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C8 H9 N
119.164
INDOLINE
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
N
N
89
S
C
N
90
N
C
N
91
N
O
N
92
N
C
N
93
N
C
N
94
N
C
N
95
N
O
N
96
N
N
N
97
N
O
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
N
N
109
S
C
N
110
N
C
N
111
N
O
N
112
N
C
N
113
N
C
N
114
N
C
N
115
N
O
N
116
N
O
N
117
N
O
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
N
N
128
N
C
N
129
N
C
N
130
N
O
N
131
N
O
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
C
N
138
N
C
N
139
N
C
N
140
N
C
Y
141
N
C
Y
142
N
C
Y
143
N
C
Y
144
N
C
N
145
N
C
N
146
N
C
N
147
N
C
N
148
N
C
N
149
N
O
N
150
N
O
N
151
N
C
N
152
N
C
N
153
N
C
N
154
N
C
N
155
N
C
N
156
N
C
N
157
N
C
Y
158
N
C
Y
159
N
C
Y
160
N
C
Y
161
N
C
N
162
N
C
N
163
N
C
N
164
N
C
N
165
N
C
N
166
N
C
N
167
N
C
N
168
N
C
N
169
N
C
N
170
N
C
N
171
N
C
N
172
N
C
N
173
N
O
N
174
N
O
Y
175
N
N
N
176
N
N
Y
177
N
N
N
178
N
N
N
179
N
FE
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
H
N
184
N
H
N
185
N
H
N
186
N
H
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
H
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
H
N
206
N
H
N
207
N
H
N
208
N
H
N
209
N
H
N
210
N
H
N
211
N
H
N
212
N
N
N
213
S
C
N
214
N
C
N
215
N
O
N
216
N
C
Y
217
N
C
Y
218
N
N
Y
219
N
C
Y
220
N
C
Y
221
N
N
N
222
N
O
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
H
N
233
N
O
N
234
N
H
N
235
N
H
N
236
N
N
N
237
N
C
N
238
N
C
Y
239
N
C
Y
240
N
C
Y
241
N
C
Y
242
N
C
Y
243
N
C
Y
244
N
C
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
H
N
253
N
H
N
254
N
N
N
255
S
C
N
256
N
C
N
257
N
O
N
258
S
C
N
259
N
C
N
260
N
C
N
261
N
C
N
262
N
O
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
H
N
274
N
H
N
275
N
H
N
276
N
N
N
277
S
C
N
278
N
C
N
279
N
O
N
280
N
C
N
281
N
C
N
282
N
C
N
283
N
C
N
284
N
O
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
H
N
291
N
H
N
292
N
H
N
293
N
H
N
294
N
H
N
295
N
H
N
296
N
H
N
297
N
H
N
298
N
N
N
299
S
C
N
300
N
C
N
301
N
O
N
302
N
C
N
303
N
C
N
304
N
C
N
305
N
C
N
306
N
N
N
307
N
O
N
308
N
H
N
309
N
H
N
310
N
H
N
311
N
H
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
H
N
322
N
H
N
323
N
N
N
324
S
C
N
325
N
C
N
326
N
O
N
327
N
C
N
328
N
C
N
329
N
S
N
330
N
C
N
331
N
O
N
332
N
H
N
333
N
H
N
334
N
H
N
335
N
H
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
N
N
344
S
C
N
345
N
C
N
346
N
O
N
347
N
C
Y
348
N
C
Y
349
N
C
Y
350
N
C
Y
351
N
C
Y
352
N
C
Y
353
N
C
N
354
N
O
N
355
N
H
N
356
N
H
N
357
N
H
N
358
N
H
N
359
N
H
N
360
N
H
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
N
N
367
S
C
N
368
N
C
N
369
N
O
N
370
N
C
N
371
N
C
N
372
N
C
N
373
N
O
N
374
N
H
N
375
N
H
N
376
N
H
N
377
N
H
N
378
N
H
N
379
N
H
N
380
N
H
N
381
N
H
N
382
N
H
N
383
N
N
N
384
S
C
N
385
N
C
N
386
N
O
N
387
N
C
N
388
N
O
N
389
N
O
N
390
N
H
N
391
N
H
N
392
N
H
N
393
N
H
N
394
N
H
N
395
N
H
N
396
N
H
N
397
N
N
N
398
S
C
N
399
N
C
N
400
N
O
N
401
R
C
N
402
N
O
N
403
N
C
N
404
N
O
N
405
N
H
N
406
N
H
N
407
N
H
N
408
N
H
N
409
N
H
N
410
N
H
N
411
N
H
N
412
N
H
N
413
N
H
N
414
N
N
N
415
S
C
N
416
N
C
N
417
N
O
N
418
N
C
Y
419
N
C
Y
420
N
C
Y
421
N
C
Y
422
N
N
Y
423
N
C
Y
424
N
C
Y
425
N
C
Y
426
N
C
Y
427
N
C
N
428
N
O
N
429
N
H
N
430
N
H
N
431
N
H
N
432
N
H
N
433
N
H
N
434
N
H
N
435
N
H
N
436
N
H
N
437
N
H
N
438
N
H
N
439
N
H
N
440
N
H
N
441
N
N
N
442
S
C
N
443
N
C
N
444
N
O
N
445
N
C
Y
446
N
C
Y
447
N
C
Y
448
N
C
Y
449
N
C
Y
450
N
C
Y
451
N
C
N
452
N
O
N
453
N
O
N
454
N
H
N
455
N
H
N
456
N
H
N
457
N
H
N
458
N
H
N
459
N
H
N
460
N
H
N
461
N
H
N
462
N
H
N
463
N
H
N
464
N
H
N
465
N
N
N
466
S
C
N
467
N
C
N
468
N
O
N
469
N
C
N
470
N
C
N
471
N
C
N
472
N
O
N
473
N
H
N
474
N
H
N
475
N
H
N
476
N
H
N
477
N
H
N
478
N
H
N
479
N
H
N
480
N
H
N
481
N
H
N
482
N
H
N
483
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
doub
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
doub
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
doub
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
doub
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
doub
N
131
N
sing
N
132
N
sing
N
133
N
doub
N
134
N
sing
N
135
N
sing
N
136
N
doub
N
137
N
sing
N
138
N
doub
N
139
N
sing
N
140
N
sing
Y
141
N
doub
Y
142
N
sing
Y
143
N
sing
N
144
N
sing
Y
145
N
doub
N
146
N
sing
Y
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
doub
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
doub
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
doub
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
doub
N
170
N
sing
N
171
N
sing
N
172
N
sing
Y
173
N
sing
Y
174
N
sing
Y
175
N
doub
N
176
N
sing
Y
177
N
sing
N
178
N
sing
Y
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
doub
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
doub
N
189
N
doub
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
doub
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
doub
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
Y
222
N
sing
Y
223
N
doub
Y
224
N
doub
N
225
N
sing
Y
226
N
sing
N
227
N
sing
Y
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
Y
243
N
doub
Y
244
N
sing
Y
245
N
sing
N
246
N
sing
Y
247
N
doub
N
248
N
sing
Y
249
N
sing
N
250
N
sing
Y
251
N
doub
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
doub
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
doub
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
doub
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
doub
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
doub
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
Y
349
N
doub
Y
350
N
sing
Y
351
N
sing
N
352
N
sing
Y
353
N
doub
N
354
N
sing
Y
355
N
doub
N
356
N
sing
Y
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
doub
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
doub
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
sing
N
395
N
sing
N
396
N
sing
N
397
N
doub
N
398
N
sing
N
399
N
sing
N
400
N
sing
N
401
N
sing
N
402
N
sing
N
403
N
sing
N
404
N
sing
N
405
N
sing
N
406
N
sing
N
407
N
sing
N
408
N
sing
N
409
N
sing
N
410
N
sing
N
411
N
sing
N
412
N
sing
N
413
N
doub
N
414
N
sing
N
415
N
sing
N
416
N
sing
N
417
N
sing
Y
418
N
doub
Y
419
N
sing
Y
420
N
sing
N
421
N
sing
Y
422
N
doub
Y
423
N
sing
Y
424
N
sing
N
425
N
sing
Y
426
N
sing
Y
427
N
doub
N
428
N
sing
Y
429
N
doub
N
430
N
sing
Y
431
N
sing
N
432
N
sing
N
433
N
sing
N
434
N
sing
N
435
N
sing
N
436
N
sing
N
437
N
sing
N
438
N
sing
N
439
N
sing
N
440
N
sing
N
441
N
doub
N
442
N
sing
N
443
N
sing
N
444
N
sing
N
445
N
sing
Y
446
N
doub
Y
447
N
sing
Y
448
N
sing
N
449
N
sing
Y
450
N
doub
N
451
N
sing
Y
452
N
doub
N
453
N
sing
Y
454
N
sing
N
455
N
sing
N
456
N
sing
N
457
N
sing
N
458
N
sing
N
459
N
sing
N
460
N
sing
N
461
N
sing
N
462
N
sing
N
463
N
sing
N
464
N
sing
N
465
N
doub
N
466
N
sing
N
467
N
sing
N
468
N
sing
N
469
N
sing
N
470
N
sing
N
471
N
sing
N
472
N
sing
N
473
N
sing
N
474
N
sing
N
475
N
sing
N
476
N
sing
UK
J.Mol.Biol.
JMOBAK
0070
0022-2836
315
845
857
10.1006/jmbi.2001.5287
11812152
Artificial protein cavities as specific ligand-binding templates: characterization of an engineered heterocyclic cation-binding site that preserves the evolved specificity of the parent protein.
2002
US
Biochemistry
BICHAW
0033
0006-2960
33
3807
Small Molecule Binding to an Artificially Created Cavity at the Active Site of Cytochrome C Peroxidase
1994
US
Biochemistry
BICHAW
0033
0006-2960
32
3313
The Asp-His-Fe Triad of Cytochrome C Peroxidase Controls the Reduction Potential, Electronic Structure, and Coupling of the Tryptophan Free Radical to the Heme
1993
10.2210/pdb1aek/pdb
pdb_00001aek
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
290
1
AREA DETECTOR
1994-12
SIEMENS
M
x-ray
1
1.5418
1.0
1.5418
ROTATING ANODE
RIGAKU RUH2R
CRYSTAL FORM BY
33459.242
CYTOCHROME C PEROXIDASE
1.11.1.5
W191G
1
man
polymer
616.487
PROTOPORPHYRIN IX CONTAINING FE
1
syn
non-polymer
119.164
INDOLINE
1
syn
non-polymer
18.015
water
100
nat
water
CCP/W191G
no
no
MKTLVHVASVEKGRSYEDFQKVYNAIALKLREDDEYDNYIGYGPVLVRLAWHISGTWDKHDNTGGSYGGTYRFKKEFNDP
SNAGLQNGFKFLEPIHKEFPWISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDAGYVRTFFQR
LNMNDREVVALMGAHALGKTHLKNSGYEGPGGAANNVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQ
DPKYLSIVKEYANDQDKFFKDFSKAFEKLLEDGITFPKDAPSPFIFKTLEEQGL
MKTLVHVASVEKGRSYEDFQKVYNAIALKLREDDEYDNYIGYGPVLVRLAWHISGTWDKHDNTGGSYGGTYRFKKEFNDP
SNAGLQNGFKFLEPIHKEFPWISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDAGYVRTFFQR
LNMNDREVVALMGAHALGKTHLKNSGYEGPGGAANNVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQ
DPKYLSIVKEYANDQDKFFKDFSKAFEKLLEDGITFPKDAPSPFIFKTLEEQGL
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
baker's yeast
Saccharomyces
Escherichia
Escherichia coli
sample
BL21
MITOCHONDRIA
CCP
4932
MITOCHONDRIA
Saccharomyces cerevisiae
CYTOPLASM
CCP (MKT)
469008
Escherichia coli BL21(DE3)
BL21 (DE3)
PT7CCP
1
3.2
61
6.0
20% MPD, 40 MM PHOSPHATE PH 6.0. A SINGLE CRYSTAL OF W191G WAS SOAKED IN 50MM INDOLINE, 10MM ETHANOL, IN 40% MPD AND 60 MM PHOSPHATE AT PH 4.5.
database_2
struct_conn
struct_ref_seq_dif
struct_site
pdbx_initial_refinement_model
chem_comp_atom
chem_comp_bond
repository
Initial release
Version format compliance
Version format compliance
Database references
Derived calculations
Refinement description
Data collection
1
0
1997-09-04
1
1
2008-03-24
1
2
2011-07-13
1
3
2021-11-03
1
4
2023-08-02
1
5
2024-05-22
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_ref_seq_dif.details
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
Y
BNL
1997-02-25
REL
REL
HEM
PROTOPORPHYRIN IX CONTAINING FE
IDM
INDOLINE
HOH
water
1AA4
PDB ENTRY 1AA4
PDB
experimental model
HEM
1
2
HEM
HEM
295
A
IDM
2
3
IDM
IDM
296
A
HOH
300
4
HOH
HOH
300
A
HOH
301
4
HOH
HOH
301
A
HOH
302
4
HOH
HOH
302
A
HOH
304
4
HOH
HOH
304
A
HOH
305
4
HOH
HOH
305
A
HOH
306
4
HOH
HOH
306
A
HOH
307
4
HOH
HOH
307
A
HOH
309
4
HOH
HOH
309
A
HOH
310
4
HOH
HOH
310
A
HOH
311
4
HOH
HOH
311
A
HOH
312
4
HOH
HOH
312
A
HOH
313
4
HOH
HOH
313
A
HOH
314
4
HOH
HOH
314
A
HOH
315
4
HOH
HOH
315
A
HOH
316
4
HOH
HOH
316
A
HOH
317
4
HOH
HOH
317
A
HOH
318
4
HOH
HOH
318
A
HOH
319
4
HOH
HOH
319
A
HOH
320
4
HOH
HOH
320
A
HOH
321
4
HOH
HOH
321
A
HOH
322
4
HOH
HOH
322
A
HOH
323
4
HOH
HOH
323
A
HOH
324
4
HOH
HOH
324
A
HOH
325
4
HOH
HOH
325
A
HOH
326
4
HOH
HOH
326
A
HOH
327
4
HOH
HOH
327
A
HOH
328
4
HOH
HOH
328
A
HOH
329
4
HOH
HOH
329
A
HOH
330
4
HOH
HOH
330
A
HOH
331
4
HOH
HOH
331
A
HOH
332
4
HOH
HOH
332
A
HOH
333
4
HOH
HOH
333
A
HOH
334
4
HOH
HOH
334
A
HOH
335
4
HOH
HOH
335
A
HOH
336
4
HOH
HOH
336
A
HOH
337
4
HOH
HOH
337
A
HOH
338
4
HOH
HOH
338
A
HOH
339
4
HOH
HOH
339
A
HOH
340
4
HOH
HOH
340
A
HOH
341
4
HOH
HOH
341
A
HOH
342
4
HOH
HOH
342
A
HOH
344
4
HOH
HOH
344
A
HOH
345
4
HOH
HOH
345
A
HOH
346
4
HOH
HOH
346
A
HOH
347
4
HOH
HOH
347
A
HOH
348
4
HOH
HOH
348
A
HOH
349
4
HOH
HOH
349
A
HOH
350
4
HOH
HOH
350
A
HOH
355
4
HOH
HOH
355
A
HOH
356
4
HOH
HOH
356
A
HOH
357
4
HOH
HOH
357
A
HOH
358
4
HOH
HOH
358
A
HOH
359
4
HOH
HOH
359
A
HOH
405
4
HOH
HOH
405
A
HOH
406
4
HOH
HOH
406
A
HOH
407
4
HOH
HOH
407
A
HOH
408
4
HOH
HOH
408
A
HOH
409
4
HOH
HOH
409
A
HOH
410
4
HOH
HOH
410
A
HOH
411
4
HOH
HOH
411
A
HOH
412
4
HOH
HOH
412
A
HOH
413
4
HOH
HOH
413
A
HOH
414
4
HOH
HOH
414
A
HOH
415
4
HOH
HOH
415
A
HOH
416
4
HOH
HOH
416
A
HOH
417
4
HOH
HOH
417
A
HOH
418
4
HOH
HOH
418
A
HOH
419
4
HOH
HOH
419
A
HOH
420
4
HOH
HOH
420
A
HOH
421
4
HOH
HOH
421
A
HOH
422
4
HOH
HOH
422
A
HOH
423
4
HOH
HOH
423
A
HOH
424
4
HOH
HOH
424
A
HOH
425
4
HOH
HOH
425
A
HOH
426
4
HOH
HOH
426
A
HOH
427
4
HOH
HOH
427
A
HOH
428
4
HOH
HOH
428
A
HOH
429
4
HOH
HOH
429
A
HOH
430
4
HOH
HOH
430
A
HOH
431
4
HOH
HOH
431
A
HOH
432
4
HOH
HOH
432
A
HOH
433
4
HOH
HOH
433
A
HOH
434
4
HOH
HOH
434
A
HOH
435
4
HOH
HOH
435
A
HOH
436
4
HOH
HOH
436
A
HOH
437
4
HOH
HOH
437
A
HOH
438
4
HOH
HOH
438
A
HOH
439
4
HOH
HOH
439
A
HOH
440
4
HOH
HOH
440
A
HOH
441
4
HOH
HOH
441
A
HOH
442
4
HOH
HOH
442
A
HOH
443
4
HOH
HOH
443
A
HOH
444
4
HOH
HOH
444
A
HOH
445
4
HOH
HOH
445
A
HOH
446
4
HOH
HOH
446
A
HOH
447
4
HOH
HOH
447
A
HOH
448
4
HOH
HOH
448
A
HOH
449
4
HOH
HOH
449
A
HOH
450
4
HOH
HOH
450
A
HOH
451
4
HOH
HOH
451
A
n
1
1
A
n
2
2
A
n
3
3
A
LEU
4
n
4
LEU
4
A
VAL
5
n
5
VAL
5
A
HIS
6
n
6
HIS
6
A
VAL
7
n
7
VAL
7
A
ALA
8
n
8
ALA
8
A
SER
9
n
9
SER
9
A
VAL
10
n
10
VAL
10
A
GLU
11
n
11
GLU
11
A
LYS
12
n
12
LYS
12
A
GLY
13
n
13
GLY
13
A
ARG
14
n
14
ARG
14
A
SER
15
n
15
SER
15
A
TYR
16
n
16
TYR
16
A
GLU
17
n
17
GLU
17
A
ASP
18
n
18
ASP
18
A
PHE
19
n
19
PHE
19
A
GLN
20
n
20
GLN
20
A
LYS
21
n
21
LYS
21
A
VAL
22
n
22
VAL
22
A
TYR
23
n
23
TYR
23
A
ASN
24
n
24
ASN
24
A
ALA
25
n
25
ALA
25
A
ILE
26
n
26
ILE
26
A
ALA
27
n
27
ALA
27
A
LEU
28
n
28
LEU
28
A
LYS
29
n
29
LYS
29
A
LEU
30
n
30
LEU
30
A
ARG
31
n
31
ARG
31
A
GLU
32
n
32
GLU
32
A
ASP
33
n
33
ASP
33
A
ASP
34
n
34
ASP
34
A
GLU
35
n
35
GLU
35
A
TYR
36
n
36
TYR
36
A
ASP
37
n
37
ASP
37
A
ASN
38
n
38
ASN
38
A
TYR
39
n
39
TYR
39
A
ILE
40
n
40
ILE
40
A
GLY
41
n
41
GLY
41
A
TYR
42
n
42
TYR
42
A
GLY
43
n
43
GLY
43
A
PRO
44
n
44
PRO
44
A
VAL
45
n
45
VAL
45
A
LEU
46
n
46
LEU
46
A
VAL
47
n
47
VAL
47
A
ARG
48
n
48
ARG
48
A
LEU
49
n
49
LEU
49
A
ALA
50
n
50
ALA
50
A
TRP
51
n
51
TRP
51
A
HIS
52
n
52
HIS
52
A
ILE
53
n
53
ILE
53
A
SER
54
n
54
SER
54
A
GLY
55
n
55
GLY
55
A
THR
56
n
56
THR
56
A
TRP
57
n
57
TRP
57
A
ASP
58
n
58
ASP
58
A
LYS
59
n
59
LYS
59
A
HIS
60
n
60
HIS
60
A
ASP
61
n
61
ASP
61
A
ASN
62
n
62
ASN
62
A
THR
63
n
63
THR
63
A
GLY
64
n
64
GLY
64
A
GLY
65
n
65
GLY
65
A
SER
66
n
66
SER
66
A
TYR
67
n
67
TYR
67
A
GLY
68
n
68
GLY
68
A
GLY
69
n
69
GLY
69
A
THR
70
n
70
THR
70
A
TYR
71
n
71
TYR
71
A
ARG
72
n
72
ARG
72
A
PHE
73
n
73
PHE
73
A
LYS
74
n
74
LYS
74
A
LYS
75
n
75
LYS
75
A
GLU
76
n
76
GLU
76
A
PHE
77
n
77
PHE
77
A
ASN
78
n
78
ASN
78
A
ASP
79
n
79
ASP
79
A
PRO
80
n
80
PRO
80
A
SER
81
n
81
SER
81
A
ASN
82
n
82
ASN
82
A
ALA
83
n
83
ALA
83
A
GLY
84
n
84
GLY
84
A
LEU
85
n
85
LEU
85
A
GLN
86
n
86
GLN
86
A
ASN
87
n
87
ASN
87
A
GLY
88
n
88
GLY
88
A
PHE
89
n
89
PHE
89
A
LYS
90
n
90
LYS
90
A
PHE
91
n
91
PHE
91
A
LEU
92
n
92
LEU
92
A
GLU
93
n
93
GLU
93
A
PRO
94
n
94
PRO
94
A
ILE
95
n
95
ILE
95
A
HIS
96
n
96
HIS
96
A
LYS
97
n
97
LYS
97
A
GLU
98
n
98
GLU
98
A
PHE
99
n
99
PHE
99
A
PRO
100
n
100
PRO
100
A
TRP
101
n
101
TRP
101
A
ILE
102
n
102
ILE
102
A
SER
103
n
103
SER
103
A
SER
104
n
104
SER
104
A
GLY
105
n
105
GLY
105
A
ASP
106
n
106
ASP
106
A
LEU
107
n
107
LEU
107
A
PHE
108
n
108
PHE
108
A
SER
109
n
109
SER
109
A
LEU
110
n
110
LEU
110
A
GLY
111
n
111
GLY
111
A
GLY
112
n
112
GLY
112
A
VAL
113
n
113
VAL
113
A
THR
114
n
114
THR
114
A
ALA
115
n
115
ALA
115
A
VAL
116
n
116
VAL
116
A
GLN
117
n
117
GLN
117
A
GLU
118
n
118
GLU
118
A
MET
119
n
119
MET
119
A
GLN
120
n
120
GLN
120
A
GLY
121
n
121
GLY
121
A
PRO
122
n
122
PRO
122
A
LYS
123
n
123
LYS
123
A
ILE
124
n
124
ILE
124
A
PRO
125
n
125
PRO
125
A
TRP
126
n
126
TRP
126
A
ARG
127
n
127
ARG
127
A
CYS
128
n
128
CYS
128
A
GLY
129
n
129
GLY
129
A
ARG
130
n
130
ARG
130
A
VAL
131
n
131
VAL
131
A
ASP
132
n
132
ASP
132
A
THR
133
n
133
THR
133
A
PRO
134
n
134
PRO
134
A
GLU
135
n
135
GLU
135
A
ASP
136
n
136
ASP
136
A
THR
137
n
137
THR
137
A
THR
138
n
138
THR
138
A
PRO
139
n
139
PRO
139
A
ASP
140
n
140
ASP
140
A
ASN
141
n
141
ASN
141
A
GLY
142
n
142
GLY
142
A
ARG
143
n
143
ARG
143
A
LEU
144
n
144
LEU
144
A
PRO
145
n
145
PRO
145
A
ASP
146
n
146
ASP
146
A
ALA
147
n
147
ALA
147
A
ASP
148
n
148
ASP
148
A
LYS
149
n
149
LYS
149
A
ASP
150
n
150
ASP
150
A
ALA
151
n
151
ALA
151
A
GLY
152
n
152
GLY
152
A
TYR
153
n
153
TYR
153
A
VAL
154
n
154
VAL
154
A
ARG
155
n
155
ARG
155
A
THR
156
n
156
THR
156
A
PHE
157
n
157
PHE
157
A
PHE
158
n
158
PHE
158
A
GLN
159
n
159
GLN
159
A
ARG
160
n
160
ARG
160
A
LEU
161
n
161
LEU
161
A
ASN
162
n
162
ASN
162
A
MET
163
n
163
MET
163
A
ASN
164
n
164
ASN
164
A
ASP
165
n
165
ASP
165
A
ARG
166
n
166
ARG
166
A
GLU
167
n
167
GLU
167
A
VAL
168
n
168
VAL
168
A
VAL
169
n
169
VAL
169
A
ALA
170
n
170
ALA
170
A
LEU
171
n
171
LEU
171
A
MET
172
n
172
MET
172
A
GLY
173
n
173
GLY
173
A
ALA
174
n
174
ALA
174
A
HIS
175
n
175
HIS
175
A
ALA
176
n
176
ALA
176
A
LEU
177
n
177
LEU
177
A
GLY
178
n
178
GLY
178
A
LYS
179
n
179
LYS
179
A
THR
180
n
180
THR
180
A
HIS
181
n
181
HIS
181
A
LEU
182
n
182
LEU
182
A
LYS
183
n
183
LYS
183
A
ASN
184
n
184
ASN
184
A
SER
185
n
185
SER
185
A
GLY
186
n
186
GLY
186
A
TYR
187
n
187
TYR
187
A
GLU
188
n
188
GLU
188
A
GLY
189
n
189
GLY
189
A
PRO
190
n
190
PRO
190
A
GLY
191
n
191
GLY
191
A
GLY
192
n
192
GLY
192
A
ALA
193
n
193
ALA
193
A
ALA
194
n
194
ALA
194
A
ASN
195
n
195
ASN
195
A
ASN
196
n
196
ASN
196
A
VAL
197
n
197
VAL
197
A
PHE
198
n
198
PHE
198
A
THR
199
n
199
THR
199
A
ASN
200
n
200
ASN
200
A
GLU
201
n
201
GLU
201
A
PHE
202
n
202
PHE
202
A
TYR
203
n
203
TYR
203
A
LEU
204
n
204
LEU
204
A
ASN
205
n
205
ASN
205
A
LEU
206
n
206
LEU
206
A
LEU
207
n
207
LEU
207
A
ASN
208
n
208
ASN
208
A
GLU
209
n
209
GLU
209
A
ASP
210
n
210
ASP
210
A
TRP
211
n
211
TRP
211
A
LYS
212
n
212
LYS
212
A
LEU
213
n
213
LEU
213
A
GLU
214
n
214
GLU
214
A
LYS
215
n
215
LYS
215
A
ASN
216
n
216
ASN
216
A
ASP
217
n
217
ASP
217
A
ALA
218
n
218
ALA
218
A
ASN
219
n
219
ASN
219
A
ASN
220
n
220
ASN
220
A
GLU
221
n
221
GLU
221
A
GLN
222
n
222
GLN
222
A
TRP
223
n
223
TRP
223
A
ASP
224
n
224
ASP
224
A
SER
225
n
225
SER
225
A
LYS
226
n
226
LYS
226
A
SER
227
n
227
SER
227
A
GLY
228
n
228
GLY
228
A
TYR
229
n
229
TYR
229
A
MET
230
n
230
MET
230
A
MET
231
n
231
MET
231
A
LEU
232
n
232
LEU
232
A
PRO
233
n
233
PRO
233
A
THR
234
n
234
THR
234
A
ASP
235
n
235
ASP
235
A
TYR
236
n
236
TYR
236
A
SER
237
n
237
SER
237
A
LEU
238
n
238
LEU
238
A
ILE
239
n
239
ILE
239
A
GLN
240
n
240
GLN
240
A
ASP
241
n
241
ASP
241
A
PRO
242
n
242
PRO
242
A
LYS
243
n
243
LYS
243
A
TYR
244
n
244
TYR
244
A
LEU
245
n
245
LEU
245
A
SER
246
n
246
SER
246
A
ILE
247
n
247
ILE
247
A
VAL
248
n
248
VAL
248
A
LYS
249
n
249
LYS
249
A
GLU
250
n
250
GLU
250
A
TYR
251
n
251
TYR
251
A
ALA
252
n
252
ALA
252
A
ASN
253
n
253
ASN
253
A
ASP
254
n
254
ASP
254
A
GLN
255
n
255
GLN
255
A
ASP
256
n
256
ASP
256
A
LYS
257
n
257
LYS
257
A
PHE
258
n
258
PHE
258
A
PHE
259
n
259
PHE
259
A
LYS
260
n
260
LYS
260
A
ASP
261
n
261
ASP
261
A
PHE
262
n
262
PHE
262
A
SER
263
n
263
SER
263
A
LYS
264
n
264
LYS
264
A
ALA
265
n
265
ALA
265
A
PHE
266
n
266
PHE
266
A
GLU
267
n
267
GLU
267
A
LYS
268
n
268
LYS
268
A
LEU
269
n
269
LEU
269
A
LEU
270
n
270
LEU
270
A
GLU
271
n
271
GLU
271
A
ASP
272
n
272
ASP
272
A
GLY
273
n
273
GLY
273
A
ILE
274
n
274
ILE
274
A
THR
275
n
275
THR
275
A
PHE
276
n
276
PHE
276
A
PRO
277
n
277
PRO
277
A
LYS
278
n
278
LYS
278
A
ASP
279
n
279
ASP
279
A
ALA
280
n
280
ALA
280
A
PRO
281
n
281
PRO
281
A
SER
282
n
282
SER
282
A
PRO
283
n
283
PRO
283
A
PHE
284
n
284
PHE
284
A
ILE
285
n
285
ILE
285
A
PHE
286
n
286
PHE
286
A
LYS
287
n
287
LYS
287
A
THR
288
n
288
THR
288
A
LEU
289
n
289
LEU
289
A
GLU
290
n
290
GLU
290
A
GLU
291
n
291
GLU
291
A
GLN
292
n
292
GLN
292
A
GLY
293
n
293
GLY
293
A
LEU
294
n
294
LEU
294
A
author_defined_assembly
1
monomeric
A
HIS
175
A
NE2
HIS
175
1_555
A
HEM
295
B
FE
HEM
1_555
A
HEM
295
B
NA
HEM
1_555
91.5
A
HIS
175
A
NE2
HIS
175
1_555
A
HEM
295
B
FE
HEM
1_555
A
HEM
295
B
NB
HEM
1_555
93.9
A
HEM
295
B
NA
HEM
1_555
A
HEM
295
B
FE
HEM
1_555
A
HEM
295
B
NB
HEM
1_555
89.9
A
HIS
175
A
NE2
HIS
175
1_555
A
HEM
295
B
FE
HEM
1_555
A
HEM
295
B
NC
HEM
1_555
89.0
A
HEM
295
B
NA
HEM
1_555
A
HEM
295
B
FE
HEM
1_555
A
HEM
295
B
NC
HEM
1_555
178.6
A
HEM
295
B
NB
HEM
1_555
A
HEM
295
B
FE
HEM
1_555
A
HEM
295
B
NC
HEM
1_555
88.8
A
HIS
175
A
NE2
HIS
175
1_555
A
HEM
295
B
FE
HEM
1_555
A
HEM
295
B
ND
HEM
1_555
85.9
A
HEM
295
B
NA
HEM
1_555
A
HEM
295
B
FE
HEM
1_555
A
HEM
295
B
ND
HEM
1_555
90.6
A
HEM
295
B
NB
HEM
1_555
A
HEM
295
B
FE
HEM
1_555
A
HEM
295
B
ND
HEM
1_555
179.5
A
HEM
295
B
NC
HEM
1_555
A
HEM
295
B
FE
HEM
1_555
A
HEM
295
B
ND
HEM
1_555
90.7
A
HIS
175
A
NE2
HIS
175
1_555
A
HEM
295
B
FE
HEM
1_555
A
HOH
313
D
O
HOH
1_555
176.8
A
HEM
295
B
NA
HEM
1_555
A
HEM
295
B
FE
HEM
1_555
A
HOH
313
D
O
HOH
1_555
88.5
A
HEM
295
B
NB
HEM
1_555
A
HEM
295
B
FE
HEM
1_555
A
HOH
313
D
O
HOH
1_555
89.2
A
HEM
295
B
NC
HEM
1_555
A
HEM
295
B
FE
HEM
1_555
A
HOH
313
D
O
HOH
1_555
91.1
A
HEM
295
B
ND
HEM
1_555
A
HEM
295
B
FE
HEM
1_555
A
HOH
313
D
O
HOH
1_555
91.0
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
O
LYS
212
A
O
LYS
212
A
N
ASP
224
A
N
ASP
224
1
A
NZ
LYS
12
A
NZ
LYS
12
1
Y
1
A
NZ
LYS
260
A
NZ
LYS
260
1
Y
1
A
MET
1
A
MET
1
1
Y
1
A
LYS
2
A
LYS
2
1
Y
1
A
THR
3
A
THR
3
1
Y
1
3.28
0.50
120.30
123.58
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
31
31
31
N
1
-4.58
0.50
120.30
115.72
A
A
A
NE
CZ
NH2
ARG
ARG
ARG
31
31
31
N
1
4.86
0.50
120.30
125.16
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
48
48
48
N
1
5.78
0.80
106.30
112.08
A
A
A
CD1
CG
CD2
TRP
TRP
TRP
51
51
51
N
1
-9.39
1.30
127.00
117.61
A
A
A
CB
CG
CD1
TRP
TRP
TRP
51
51
51
N
1
-5.95
0.80
107.30
101.35
A
A
A
CE2
CD2
CG
TRP
TRP
TRP
51
51
51
N
1
6.09
0.90
133.90
139.99
A
A
A
CG
CD2
CE3
TRP
TRP
TRP
51
51
51
N
1
6.29
0.80
106.30
112.59
A
A
A
CD1
CG
CD2
TRP
TRP
TRP
57
57
57
N
1
-5.40
0.80
107.30
101.90
A
A
A
CE2
CD2
CG
TRP
TRP
TRP
57
57
57
N
1
-4.54
0.60
121.00
116.46
A
A
A
CB
CG
CD2
TYR
TYR
TYR
71
71
71
N
1
3.09
0.50
120.30
123.39
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
72
72
72
N
1
6.78
0.80
106.30
113.08
A
A
A
CD1
CG
CD2
TRP
TRP
TRP
101
101
101
N
1
-5.76
0.80
107.30
101.54
A
A
A
CE2
CD2
CG
TRP
TRP
TRP
101
101
101
N
1
6.58
0.80
106.30
112.88
A
A
A
CD1
CG
CD2
TRP
TRP
TRP
126
126
126
N
1
-6.09
0.80
107.30
101.21
A
A
A
CE2
CD2
CG
TRP
TRP
TRP
126
126
126
N
1
-19.16
2.60
111.60
92.44
A
A
A
CB
CG
CD
ARG
ARG
ARG
127
127
127
N
1
3.84
0.50
120.30
124.14
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
127
127
127
N
1
-4.01
0.50
120.30
116.29
A
A
A
NE
CZ
NH2
ARG
ARG
ARG
127
127
127
N
1
-12.67
2.10
111.80
99.13
A
A
A
CG
CD
NE
ARG
ARG
ARG
130
130
130
N
1
-3.31
0.50
120.30
116.99
A
A
A
NE
CZ
NH2
ARG
ARG
ARG
130
130
130
N
1
17.06
2.70
111.00
128.06
A
A
A
N
CA
C
ASN
ASN
ASN
162
162
162
N
1
-15.37
2.20
117.20
101.83
A
A
A
CA
C
N
ASN
ASN
MET
162
162
163
Y
1
-5.62
0.50
120.30
114.68
A
A
A
NE
CZ
NH2
ARG
ARG
ARG
166
166
166
N
1
5.20
0.80
106.30
111.50
A
A
A
CD1
CG
CD2
TRP
TRP
TRP
211
211
211
N
1
-5.19
0.80
107.30
102.11
A
A
A
CE2
CD2
CG
TRP
TRP
TRP
211
211
211
N
1
6.10
0.80
106.30
112.40
A
A
A
CD1
CG
CD2
TRP
TRP
TRP
223
223
223
N
1
-5.84
0.80
107.30
101.46
A
A
A
CE2
CD2
CG
TRP
TRP
TRP
223
223
223
N
1
-3.76
0.60
121.00
117.24
A
A
A
CB
CG
CD2
TYR
TYR
TYR
229
229
229
N
1
A
A
NE2
CD2
HIS
HIS
6
6
-0.070
0.011
1.373
1.303
N
1
A
A
NE2
CD2
HIS
HIS
60
60
-0.067
0.011
1.373
1.306
N
1
A
A
NE2
CD2
HIS
HIS
96
96
-0.069
0.011
1.373
1.304
N
1
A
A
NE2
CD2
HIS
HIS
175
175
-0.069
0.011
1.373
1.304
N
1
A
A
NE2
CD2
HIS
HIS
181
181
-0.072
0.011
1.373
1.301
N
1
A
ASN
141
-48.19
153.53
1
A
ASN
162
-2.32
75.82
2.1
7.0
19099
79.
10000000.0
0.5
1
0.0
MOLECULAR REPLACEMENT
PDB ENTRY 1AA4
2.1
7.0
100
2993
52
0
2841
2.1
15.
1AEK
17064
0.0
0.0650000
0.0600000
1
14.67
3.00
71.
0.1700000
2.28
2.51
2.72
0.3300000
2.5
60.
refinement
XTALVIEW
data reduction
XENGEN
data scaling
XENGEN
SPECIFICITY OF LIGAND BINDING TO A BURIED POLAR CAVITY AT THE ACTIVE SITE OF CYTOCHROME C PEROXIDASE (INDOLINE)
1
N
N
2
N
N
3
N
N
4
N
N
A
SER
15
A
SER
15
HELX_P
A
ASP
33
A
ASP
33
1
A
19
A
TYR
42
A
TYR
42
HELX_P
A
SER
54
A
SER
54
1
B
13
A
PHE
73
A
PHE
73
HELX_P
A
ASN
78
A
ASN
78
1
B1
6
A
GLY
84
A
GLY
84
HELX_P
A
PHE
99
A
PHE
99
1
C
16
A
SER
103
A
SER
103
HELX_P
A
MET
119
A
MET
119
1
D
17
A
ASP
150
A
ASP
150
HELX_P
A
PHE
158
A
PHE
158
1
E
9
A
ASN
164
A
ASN
164
HELX_P
A
LEU
177
A
LEU
177
1
F
14
A
HIS
181
A
HIS
181
HELX_P
A
GLY
186
A
GLY
186
1
F1
6
A
GLU
201
A
GLU
201
HELX_P
A
GLU
209
A
GLU
209
1
G
9
A
LEU
232
A
LEU
232
HELX_P
A
GLN
240
A
GLN
240
1
H
9
A
ASP
241
A
ASP
241
HELX_P
A
ASN
253
A
ASN
253
1
I
13
A
GLN
255
A
GLN
255
HELX_P
A
ASP
272
A
ASP
272
1
J
18
A
THR
288
A
THR
288
HELX_P
A
GLY
293
A
GLY
293
1
J1
6
metalc
1.997
A
HIS
175
A
NE2
HIS
175
1_555
A
HEM
295
B
FE
HEM
1_555
metalc
1.952
A
HEM
295
B
FE
HEM
1_555
A
HOH
313
D
O
HOH
1_555
OXIDOREDUCTASE
OXIDOREDUCTASE, PEROXIDASE, TRANSIT PEPTIDE
CCPR_YEAST
UNP
1
1
P00431
MTTAVRLLPSLGRTAHKRSLYLFSAAAAAAAAATFAYSQSQKRSSSSPGGGSNHGWNNWGKAAALASTTPLVHVASVEKG
RSYEDFQKVYNAIALKLREDDEYDNYIGYGPVLVRLAWHTSGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLE
PIHKEFPWISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDADYVRTFFQRLNMNDREVVALMG
AHALGKTHLKNSGYEGPWGAANNVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYAN
DQDKFFKDFSKAFEKLLENGITFPKDAPSPFIFKTLEEQGL
71
361
1AEK
4
294
P00431
A
1
4
294
1
THR
variant
ILE
53
1AEK
A
P00431
UNP
120
53
1
ASP
variant
GLY
152
1AEK
A
P00431
UNP
219
152
1
TRP
engineered mutation
GLY
191
1AEK
A
P00431
UNP
258
191
1
ASN
conflict
ASP
272
1AEK
A
P00431
UNP
339
272
2
anti-parallel
A
TRP
211
A
TRP
211
A
LYS
215
A
LYS
215
A
GLU
221
A
GLU
221
A
SER
225
A
SER
225
REMOVAL OF TRP 191 FORMS AN INTERNAL CAVITY BELOW THE HEME RELATIVE TO THE ACTIVE SITE.
Unknown
3
BINDING SITE FOR RESIDUE HEM A 295
A
HEM
295
Software
21
BINDING SITE FOR RESIDUE IDM A 296
A
IDM
296
Software
8
A
ARG
48
A
ARG
48
3
1_555
A
TRP
51
A
TRP
51
3
1_555
A
HIS
52
A
HIS
52
3
1_555
A
PRO
44
A
PRO
44
21
1_555
A
VAL
47
A
VAL
47
21
1_555
A
ARG
48
A
ARG
48
21
1_555
A
TRP
51
A
TRP
51
21
1_555
A
PRO
145
A
PRO
145
21
1_555
A
ASP
146
A
ASP
146
21
1_555
A
MET
172
A
MET
172
21
1_555
A
ALA
174
A
ALA
174
21
1_555
A
HIS
175
A
HIS
175
21
1_555
A
LEU
177
A
LEU
177
21
1_555
A
GLY
178
A
GLY
178
21
1_555
A
LYS
179
A
LYS
179
21
1_555
A
THR
180
A
THR
180
21
1_555
A
HIS
181
A
HIS
181
21
1_555
A
ASN
184
A
ASN
184
21
1_555
A
SER
185
A
SER
185
21
1_555
A
IDM
296
C
IDM
21
1_555
A
HOH
302
D
HOH
21
1_555
A
HOH
311
D
HOH
21
1_555
A
HOH
313
D
HOH
21
1_555
A
HOH
314
D
HOH
21
1_555
A
HIS
175
A
HIS
175
8
1_555
A
THR
180
A
THR
180
8
1_555
A
GLY
191
A
GLY
191
8
1_555
A
MET
230
A
MET
230
8
1_555
A
MET
231
A
MET
231
8
1_555
A
LEU
232
A
LEU
232
8
1_555
A
ASP
235
A
ASP
235
8
1_555
A
HEM
295
B
HEM
8
1_555
19
P 21 21 21