1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 Zegar, I.S. Stone, M.P. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 1 90.00 90.00 90.00 1.000 1.000 1.000 C10 H14 N5 O6 P 331.222 y 2'-DEOXYADENOSINE-5'-MONOPHOSPHATE DNA linking C9 H14 N3 O7 P 307.197 y 2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE DNA linking C10 H14 N5 O7 P 347.221 y 2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE DNA linking C10 H15 N2 O8 P 322.208 y THYMIDINE-5'-MONOPHOSPHATE DNA linking C18 H22 N5 O8 P 467.370 n 2'-DEOXY-N2-(R)STYRENE OXIDE GUANOSINE MONOPHOSPHATE DNA linking US Biochemistry BICHAW 0033 0006-2960 35 4334 4348 10.1021/bi952086s 8605182 Styrene oxide adducts in an oligodeoxynucleotide containing the human N-ras codon 12 sequence: structural refinement of the minor groove R(12,2)- and S(12,2)-alpha-(N2-guanyl) stereoisomers from 1H NMR. 1996 10.2210/pdb1af1/pdb pdb_00001af1 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 R-STYRENE-CODON 12 ADDUCT 3590.406 DNA (5'-D(*GP*GP*CP*AP*GP*GSRP*TP*GP*GP*TP*G)-3') 1 syn polymer R-STYRENE-CODON 12 ADDUCT 3239.127 DNA (5'-D(*CP*AP*CP*CP*AP*CP*CP*TP*GP*CP*C)-3') 1 syn polymer no yes (DG)(DG)(DC)(DA)(DG)(GSR)(DT)(DG)(DG)(DT)(DG) GGCAGGTGGTG A polydeoxyribonucleotide no no (DC)(DA)(DC)(DC)(DA)(DC)(DC)(DT)(DG)(DC)(DC) CACCACCTGCC B polydeoxyribonucleotide n n n n n n n n n n n n n n n n n n n n n n -11.567 1 19 A 1 B 22 -1.066 A_DG1:DC22_B 1 -4.357 -0.584 -0.217 -0.287 -1.062 1 19 A 2 B 21 -0.193 A_DG2:DC21_B 2 -8.113 -0.567 0.061 -0.222 -7.789 1 19 A 3 B 20 -0.654 A_DC3:DG20_B 3 -3.106 0.769 0.247 -0.353 4.909 1 20 A 4 B 19 -3.896 A_DA4:DT19_B 4 -4.690 0.309 -0.033 -0.005 18.190 1 19 A 5 B 18 -1.853 A_DG5:DC18_B 5 13.239 -0.701 0.328 -0.306 0.682 1 19 A 6 B 17 8.972 A_GSR6:DC17_B 6 -18.670 -1.129 -0.769 -0.567 5.442 1 20 A 7 B 16 12.643 A_DT7:DA16_B 7 -30.148 0.915 -1.046 -0.542 -0.960 1 19 A 8 B 15 3.557 A_DG8:DC15_B 8 -6.155 -0.808 -0.023 -0.216 -6.928 1 19 A 9 B 14 0.209 A_DG9:DC14_B 9 -22.700 -0.532 -0.377 -0.352 -10.228 1 20 A 10 B 13 -4.860 A_DT10:DA13_B 10 -15.252 -0.543 -0.162 -0.163 -8.066 1 19 A 11 B 12 0.537 A_DG11:DC12_B 11 -13.222 -0.663 -0.183 -0.336 2.857 35.172 A A 1 2 10.637 B B 22 21 2.912 6.388 0.136 0.050 AA_DG1DG2:DC21DC22_BB 1 -2.744 4.570 34.499 -0.765 -0.590 3.583 42.823 A A 2 3 -14.587 B B 21 20 3.562 -10.539 -0.236 -0.485 AA_DG2DC3:DG20DC21_BB 2 -3.534 4.891 41.421 0.505 -0.069 2.920 33.646 A A 3 4 2.550 B B 20 19 2.975 1.466 0.111 -0.301 AA_DC3DA4:DT19DG20_BB 3 7.032 -12.237 32.892 -0.738 0.855 2.778 23.264 A A 4 5 2.446 B B 19 18 2.853 0.984 0.212 -0.662 AA_DA4DG5:DC18DT19_BB 4 -2.760 6.863 23.082 -1.933 -1.346 2.853 35.579 A A 5 6 31.763 B B 18 17 3.608 18.415 0.745 -0.644 AA_DG5GSR6:DC17DC18_BB 5 6.002 -10.353 29.989 -3.949 -0.275 3.045 55.245 A A 6 7 -16.404 B B 17 16 3.521 -15.010 -0.208 1.232 AA_GSR6DT7:DA16DC17_BB 6 7.146 -7.809 52.873 2.239 0.658 3.337 30.931 A A 7 8 29.216 B B 16 15 3.766 14.800 -0.404 0.084 AA_DT7DG8:DC15DA16_BB 7 -7.463 14.732 26.207 -3.227 -0.948 3.510 37.230 A A 8 9 6.068 B B 15 14 3.458 3.867 -0.582 0.615 AA_DG8DG9:DC14DC15_BB 8 -0.558 0.876 37.031 0.415 0.833 3.231 38.726 A A 9 10 -13.865 B B 14 13 3.307 -9.114 -0.545 0.003 AA_DG9DT10:DA13DC14_BB 9 -0.844 1.284 37.670 1.137 0.717 3.133 36.068 A A 10 11 14.845 B B 13 12 3.214 9.090 0.567 0.266 AA_DT10DG11:DC12DA13_BB 10 -2.648 4.325 34.843 -0.843 -1.286 database_2 pdbx_database_status pdbx_nmr_software pdbx_struct_assembly pdbx_struct_oper_list struct_conn repository Initial release Version format compliance Version format compliance Data collection Database references Derived calculations Other 1 0 1997-08-20 1 1 2008-03-24 1 2 2011-07-13 1 3 2022-02-16 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_database_status.process_site _pdbx_nmr_software.name _struct_conn.pdbx_leaving_atom_flag _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id MINIMIZED AVERAGE STRUCTURE Y BNL 1997-03-20 REL THIS STRUCTURE PROVIDED THE BEST-FIT FOR THE NOE DATA BASED ON THE RELAXATION MATRIX ANALYSIS USING CORMA. 1 1 NOESY 2QF-COSY AND TOCSY 2QF-COSY 6.9 303 K REFINEMENT DETAILS CAN BE FOUND IN THE JRNL CITATION ABOVE. NOE-RESTRAINED MOLECULAR DYNAMICS/SIMULATED ANNEALING BRUNGER refinement X-PLOR 3.1 structure solution Felix structure solution X-PLOR structure solution MARDIGRAS structure solution CORMA 500 Bruker AMX500 G 1 n 1 DG 1 A G 2 n 2 DG 2 A C 3 n 3 DC 3 A A 4 n 4 DA 4 A G 5 n 5 DG 5 A GSR 6 n 6 GSR 6 A T 7 n 7 DT 7 A G 8 n 8 DG 8 A G 9 n 9 DG 9 A T 10 n 10 DT 10 A G 11 n 11 DG 11 A C 12 n 1 DC 12 B A 13 n 2 DA 13 B C 14 n 3 DC 14 B C 15 n 4 DC 15 B A 16 n 5 DA 16 B C 17 n 6 DC 17 B C 18 n 7 DC 18 B T 19 n 8 DT 19 B G 20 n 9 DG 20 B C 21 n 10 DC 21 B C 22 n 11 DC 22 B author_defined_assembly 2 dimeric A GSR 6 A GSR 6 DG 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 1 2.65 0.30 108.30 110.95 A A A O4' C1' N9 DG DG DG 1 1 1 N 1 4.50 0.50 113.10 117.60 A A A N7 C8 N9 DG DG DG 1 1 1 N 1 -2.72 0.40 106.40 103.68 A A A C8 N9 C4 DG DG DG 1 1 1 N 1 2.48 0.30 108.30 110.78 A A A O4' C1' N9 DG DG DG 2 2 2 N 1 4.55 0.50 113.10 117.65 A A A N7 C8 N9 DG DG DG 2 2 2 N 1 -2.84 0.40 106.40 103.56 A A A C8 N9 C4 DG DG DG 2 2 2 N 1 2.88 0.30 108.30 111.18 A A A O4' C1' N1 DC DC DC 3 3 3 N 1 2.64 0.30 108.30 110.94 A A A O4' C1' N9 DA DA DA 4 4 4 N 1 3.70 0.50 113.80 117.50 A A A N7 C8 N9 DA DA DA 4 4 4 N 1 3.31 0.30 108.30 111.61 A A A O4' C1' N9 DG DG DG 5 5 5 N 1 4.33 0.50 113.10 117.43 A A A N7 C8 N9 DG DG DG 5 5 5 N 1 -2.56 0.40 106.40 103.84 A A A C8 N9 C4 DG DG DG 5 5 5 N 1 2.72 0.30 108.30 111.02 A A A O4' C1' N1 DT DT DT 7 7 7 N 1 4.53 0.50 113.10 117.63 A A A N7 C8 N9 DG DG DG 8 8 8 N 1 -2.88 0.40 106.40 103.52 A A A C8 N9 C4 DG DG DG 8 8 8 N 1 3.23 0.30 108.30 111.53 A A A O4' C1' N9 DG DG DG 9 9 9 N 1 4.51 0.50 113.10 117.61 A A A N7 C8 N9 DG DG DG 9 9 9 N 1 -2.71 0.40 106.40 103.69 A A A C8 N9 C4 DG DG DG 9 9 9 N 1 2.54 0.30 108.30 110.84 A A A O4' C1' N1 DT DT DT 10 10 10 N 1 2.95 0.30 108.30 111.25 A A A O4' C1' N9 DG DG DG 11 11 11 N 1 4.55 0.50 113.10 117.65 A A A N7 C8 N9 DG DG DG 11 11 11 N 1 -2.69 0.40 106.40 103.71 A A A C8 N9 C4 DG DG DG 11 11 11 N 1 2.64 0.30 108.30 110.94 B B B O4' C1' N1 DC DC DC 12 12 12 N 1 3.84 0.50 113.80 117.64 B B B N7 C8 N9 DA DA DA 13 13 13 N 1 -2.60 0.40 105.80 103.20 B B B C8 N9 C4 DA DA DA 13 13 13 N 1 2.11 0.30 108.30 110.41 B B B O4' C1' N1 DC DC DC 14 14 14 N 1 2.53 0.30 108.30 110.83 B B B O4' C1' N1 DC DC DC 15 15 15 N 1 2.98 0.30 108.30 111.28 B B B O4' C1' N9 DA DA DA 16 16 16 N 1 3.73 0.50 113.80 117.53 B B B N7 C8 N9 DA DA DA 16 16 16 N 1 2.78 0.30 108.30 111.08 B B B O4' C1' N1 DC DC DC 17 17 17 N 1 2.53 0.30 108.30 110.83 B B B O4' C1' N1 DC DC DC 18 18 18 N 1 3.19 0.30 108.30 111.49 B B B O4' C1' N1 DT DT DT 19 19 19 N 1 2.51 0.30 108.30 110.81 B B B O4' C1' N9 DG DG DG 20 20 20 N 1 4.55 0.50 113.10 117.65 B B B N7 C8 N9 DG DG DG 20 20 20 N 1 -2.75 0.40 106.40 103.65 B B B C8 N9 C4 DG DG DG 20 20 20 N 1 3.08 0.30 108.30 111.38 B B B O4' C1' N1 DC DC DC 21 21 21 N 1 2.55 0.30 108.30 110.85 B B B O4' C1' N1 DC DC DC 22 22 22 N model building X-PLOR 3.1 refinement X-PLOR 3.1 phasing X-PLOR 3.1 THE SOLUTION NMR STRUCTURE OF AN R-STYRENE OXIDE ADDUCT AT THE N2 POSITION OF GUANINE OF AN 11 BASE-PAIR OLIGONUCLEOTIDE SEQUENCE CODING FOR AMINO ACIDS 11-13 OF THE PRODUCT OF THE N-RAS PROTOONCOGENE, MINIMIZED AVERAGE STRUCTURE 1 N N 2 N N covale 1.614 both A DG 5 A O3' DG 5 1_555 A GSR 6 A P GSR 6 1_555 covale 1.614 both A GSR 6 A O3' GSR 6 1_555 A DT 7 A P DT 7 1_555 hydrog WATSON-CRICK A DG 1 A N1 DG 1 1_555 B DC 22 B N3 DC 11 1_555 hydrog WATSON-CRICK A DG 1 A N2 DG 1 1_555 B DC 22 B O2 DC 11 1_555 hydrog WATSON-CRICK A DG 1 A O6 DG 1 1_555 B DC 22 B N4 DC 11 1_555 hydrog WATSON-CRICK A DG 2 A N1 DG 2 1_555 B DC 21 B N3 DC 10 1_555 hydrog WATSON-CRICK A DG 2 A N2 DG 2 1_555 B DC 21 B O2 DC 10 1_555 hydrog WATSON-CRICK A DG 2 A O6 DG 2 1_555 B DC 21 B N4 DC 10 1_555 hydrog WATSON-CRICK A DC 3 A N3 DC 3 1_555 B DG 20 B N1 DG 9 1_555 hydrog WATSON-CRICK A DC 3 A N4 DC 3 1_555 B DG 20 B O6 DG 9 1_555 hydrog WATSON-CRICK A DC 3 A O2 DC 3 1_555 B DG 20 B N2 DG 9 1_555 hydrog WATSON-CRICK A DA 4 A N1 DA 4 1_555 B DT 19 B N3 DT 8 1_555 hydrog WATSON-CRICK A DA 4 A N6 DA 4 1_555 B DT 19 B O4 DT 8 1_555 hydrog WATSON-CRICK A DG 5 A N1 DG 5 1_555 B DC 18 B N3 DC 7 1_555 hydrog WATSON-CRICK A DG 5 A N2 DG 5 1_555 B DC 18 B O2 DC 7 1_555 hydrog WATSON-CRICK A DG 5 A O6 DG 5 1_555 B DC 18 B N4 DC 7 1_555 hydrog WATSON-CRICK A GSR 6 A N1 GSR 6 1_555 B DC 17 B N3 DC 6 1_555 hydrog WATSON-CRICK A GSR 6 A N2 GSR 6 1_555 B DC 17 B O2 DC 6 1_555 hydrog WATSON-CRICK A GSR 6 A O6 GSR 6 1_555 B DC 17 B N4 DC 6 1_555 hydrog WATSON-CRICK A DT 7 A N3 DT 7 1_555 B DA 16 B N1 DA 5 1_555 hydrog WATSON-CRICK A DT 7 A O4 DT 7 1_555 B DA 16 B N6 DA 5 1_555 hydrog WATSON-CRICK A DG 8 A N1 DG 8 1_555 B DC 15 B N3 DC 4 1_555 hydrog WATSON-CRICK A DG 8 A N2 DG 8 1_555 B DC 15 B O2 DC 4 1_555 hydrog WATSON-CRICK A DG 8 A O6 DG 8 1_555 B DC 15 B N4 DC 4 1_555 hydrog WATSON-CRICK A DG 9 A N1 DG 9 1_555 B DC 14 B N3 DC 3 1_555 hydrog WATSON-CRICK A DG 9 A N2 DG 9 1_555 B DC 14 B O2 DC 3 1_555 hydrog WATSON-CRICK A DG 9 A O6 DG 9 1_555 B DC 14 B N4 DC 3 1_555 hydrog WATSON-CRICK A DT 10 A N3 DT 10 1_555 B DA 13 B N1 DA 2 1_555 hydrog WATSON-CRICK A DT 10 A O4 DT 10 1_555 B DA 13 B N6 DA 2 1_555 hydrog WATSON-CRICK A DG 11 A N1 DG 11 1_555 B DC 12 B N3 DC 1 1_555 hydrog WATSON-CRICK A DG 11 A N2 DG 11 1_555 B DC 12 B O2 DC 1 1_555 hydrog WATSON-CRICK A DG 11 A O6 DG 11 1_555 B DC 12 B N4 DC 1 1_555 DNA DNA DUPLEX, HUMAN N-RAS GENE, CODON 12 SEQUENCE, R-STYRENE OXIDE, MINOR GROOVE ADDUCT, DEOXYRIBONUCLEIC ACID, DNA 1AF1 PDB 1 1AF1 1AF1 PDB 2 1AF1 1 11 1AF1 1 11 1AF1 A 1 1 11 12 22 1AF1 12 22 1AF1 B 2 1 11 1 P 1