1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Zegar, I.S.
Stone, M.P.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
1
90.00
90.00
90.00
1.000
1.000
1.000
C10 H14 N5 O6 P
331.222
y
2'-DEOXYADENOSINE-5'-MONOPHOSPHATE
DNA linking
C9 H14 N3 O7 P
307.197
y
2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE
DNA linking
C10 H14 N5 O7 P
347.221
y
2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE
DNA linking
C10 H15 N2 O8 P
322.208
y
THYMIDINE-5'-MONOPHOSPHATE
DNA linking
C18 H22 N5 O8 P
467.370
n
2'-DEOXY-N2-(R)STYRENE OXIDE GUANOSINE MONOPHOSPHATE
DNA linking
US
Biochemistry
BICHAW
0033
0006-2960
35
4334
4348
10.1021/bi952086s
8605182
Styrene oxide adducts in an oligodeoxynucleotide containing the human N-ras codon 12 sequence: structural refinement of the minor groove R(12,2)- and S(12,2)-alpha-(N2-guanyl) stereoisomers from 1H NMR.
1996
10.2210/pdb1af1/pdb
pdb_00001af1
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
R-STYRENE-CODON 12 ADDUCT
3590.406
DNA (5'-D(*GP*GP*CP*AP*GP*GSRP*TP*GP*GP*TP*G)-3')
1
syn
polymer
R-STYRENE-CODON 12 ADDUCT
3239.127
DNA (5'-D(*CP*AP*CP*CP*AP*CP*CP*TP*GP*CP*C)-3')
1
syn
polymer
no
yes
(DG)(DG)(DC)(DA)(DG)(GSR)(DT)(DG)(DG)(DT)(DG)
GGCAGGTGGTG
A
polydeoxyribonucleotide
no
no
(DC)(DA)(DC)(DC)(DA)(DC)(DC)(DT)(DG)(DC)(DC)
CACCACCTGCC
B
polydeoxyribonucleotide
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
-11.567
1
19
A
1
B
22
-1.066
A_DG1:DC22_B
1
-4.357
-0.584
-0.217
-0.287
-1.062
1
19
A
2
B
21
-0.193
A_DG2:DC21_B
2
-8.113
-0.567
0.061
-0.222
-7.789
1
19
A
3
B
20
-0.654
A_DC3:DG20_B
3
-3.106
0.769
0.247
-0.353
4.909
1
20
A
4
B
19
-3.896
A_DA4:DT19_B
4
-4.690
0.309
-0.033
-0.005
18.190
1
19
A
5
B
18
-1.853
A_DG5:DC18_B
5
13.239
-0.701
0.328
-0.306
0.682
1
19
A
6
B
17
8.972
A_GSR6:DC17_B
6
-18.670
-1.129
-0.769
-0.567
5.442
1
20
A
7
B
16
12.643
A_DT7:DA16_B
7
-30.148
0.915
-1.046
-0.542
-0.960
1
19
A
8
B
15
3.557
A_DG8:DC15_B
8
-6.155
-0.808
-0.023
-0.216
-6.928
1
19
A
9
B
14
0.209
A_DG9:DC14_B
9
-22.700
-0.532
-0.377
-0.352
-10.228
1
20
A
10
B
13
-4.860
A_DT10:DA13_B
10
-15.252
-0.543
-0.162
-0.163
-8.066
1
19
A
11
B
12
0.537
A_DG11:DC12_B
11
-13.222
-0.663
-0.183
-0.336
2.857
35.172
A
A
1
2
10.637
B
B
22
21
2.912
6.388
0.136
0.050
AA_DG1DG2:DC21DC22_BB
1
-2.744
4.570
34.499
-0.765
-0.590
3.583
42.823
A
A
2
3
-14.587
B
B
21
20
3.562
-10.539
-0.236
-0.485
AA_DG2DC3:DG20DC21_BB
2
-3.534
4.891
41.421
0.505
-0.069
2.920
33.646
A
A
3
4
2.550
B
B
20
19
2.975
1.466
0.111
-0.301
AA_DC3DA4:DT19DG20_BB
3
7.032
-12.237
32.892
-0.738
0.855
2.778
23.264
A
A
4
5
2.446
B
B
19
18
2.853
0.984
0.212
-0.662
AA_DA4DG5:DC18DT19_BB
4
-2.760
6.863
23.082
-1.933
-1.346
2.853
35.579
A
A
5
6
31.763
B
B
18
17
3.608
18.415
0.745
-0.644
AA_DG5GSR6:DC17DC18_BB
5
6.002
-10.353
29.989
-3.949
-0.275
3.045
55.245
A
A
6
7
-16.404
B
B
17
16
3.521
-15.010
-0.208
1.232
AA_GSR6DT7:DA16DC17_BB
6
7.146
-7.809
52.873
2.239
0.658
3.337
30.931
A
A
7
8
29.216
B
B
16
15
3.766
14.800
-0.404
0.084
AA_DT7DG8:DC15DA16_BB
7
-7.463
14.732
26.207
-3.227
-0.948
3.510
37.230
A
A
8
9
6.068
B
B
15
14
3.458
3.867
-0.582
0.615
AA_DG8DG9:DC14DC15_BB
8
-0.558
0.876
37.031
0.415
0.833
3.231
38.726
A
A
9
10
-13.865
B
B
14
13
3.307
-9.114
-0.545
0.003
AA_DG9DT10:DA13DC14_BB
9
-0.844
1.284
37.670
1.137
0.717
3.133
36.068
A
A
10
11
14.845
B
B
13
12
3.214
9.090
0.567
0.266
AA_DT10DG11:DC12DA13_BB
10
-2.648
4.325
34.843
-0.843
-1.286
database_2
pdbx_database_status
pdbx_nmr_software
pdbx_struct_assembly
pdbx_struct_oper_list
struct_conn
repository
Initial release
Version format compliance
Version format compliance
Data collection
Database references
Derived calculations
Other
1
0
1997-08-20
1
1
2008-03-24
1
2
2011-07-13
1
3
2022-02-16
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_database_status.process_site
_pdbx_nmr_software.name
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
MINIMIZED AVERAGE STRUCTURE
Y
BNL
1997-03-20
REL
THIS STRUCTURE PROVIDED THE BEST-FIT FOR THE NOE DATA BASED ON THE RELAXATION MATRIX ANALYSIS USING CORMA.
1
1
NOESY
2QF-COSY
AND TOCSY
2QF-COSY
6.9
303
K
REFINEMENT DETAILS CAN BE FOUND IN THE JRNL CITATION ABOVE.
NOE-RESTRAINED MOLECULAR DYNAMICS/SIMULATED ANNEALING
BRUNGER
refinement
X-PLOR
3.1
structure solution
Felix
structure solution
X-PLOR
structure solution
MARDIGRAS
structure solution
CORMA
500
Bruker
AMX500
G
1
n
1
DG
1
A
G
2
n
2
DG
2
A
C
3
n
3
DC
3
A
A
4
n
4
DA
4
A
G
5
n
5
DG
5
A
GSR
6
n
6
GSR
6
A
T
7
n
7
DT
7
A
G
8
n
8
DG
8
A
G
9
n
9
DG
9
A
T
10
n
10
DT
10
A
G
11
n
11
DG
11
A
C
12
n
1
DC
12
B
A
13
n
2
DA
13
B
C
14
n
3
DC
14
B
C
15
n
4
DC
15
B
A
16
n
5
DA
16
B
C
17
n
6
DC
17
B
C
18
n
7
DC
18
B
T
19
n
8
DT
19
B
G
20
n
9
DG
20
B
C
21
n
10
DC
21
B
C
22
n
11
DC
22
B
author_defined_assembly
2
dimeric
A
GSR
6
A
GSR
6
DG
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1
2.65
0.30
108.30
110.95
A
A
A
O4'
C1'
N9
DG
DG
DG
1
1
1
N
1
4.50
0.50
113.10
117.60
A
A
A
N7
C8
N9
DG
DG
DG
1
1
1
N
1
-2.72
0.40
106.40
103.68
A
A
A
C8
N9
C4
DG
DG
DG
1
1
1
N
1
2.48
0.30
108.30
110.78
A
A
A
O4'
C1'
N9
DG
DG
DG
2
2
2
N
1
4.55
0.50
113.10
117.65
A
A
A
N7
C8
N9
DG
DG
DG
2
2
2
N
1
-2.84
0.40
106.40
103.56
A
A
A
C8
N9
C4
DG
DG
DG
2
2
2
N
1
2.88
0.30
108.30
111.18
A
A
A
O4'
C1'
N1
DC
DC
DC
3
3
3
N
1
2.64
0.30
108.30
110.94
A
A
A
O4'
C1'
N9
DA
DA
DA
4
4
4
N
1
3.70
0.50
113.80
117.50
A
A
A
N7
C8
N9
DA
DA
DA
4
4
4
N
1
3.31
0.30
108.30
111.61
A
A
A
O4'
C1'
N9
DG
DG
DG
5
5
5
N
1
4.33
0.50
113.10
117.43
A
A
A
N7
C8
N9
DG
DG
DG
5
5
5
N
1
-2.56
0.40
106.40
103.84
A
A
A
C8
N9
C4
DG
DG
DG
5
5
5
N
1
2.72
0.30
108.30
111.02
A
A
A
O4'
C1'
N1
DT
DT
DT
7
7
7
N
1
4.53
0.50
113.10
117.63
A
A
A
N7
C8
N9
DG
DG
DG
8
8
8
N
1
-2.88
0.40
106.40
103.52
A
A
A
C8
N9
C4
DG
DG
DG
8
8
8
N
1
3.23
0.30
108.30
111.53
A
A
A
O4'
C1'
N9
DG
DG
DG
9
9
9
N
1
4.51
0.50
113.10
117.61
A
A
A
N7
C8
N9
DG
DG
DG
9
9
9
N
1
-2.71
0.40
106.40
103.69
A
A
A
C8
N9
C4
DG
DG
DG
9
9
9
N
1
2.54
0.30
108.30
110.84
A
A
A
O4'
C1'
N1
DT
DT
DT
10
10
10
N
1
2.95
0.30
108.30
111.25
A
A
A
O4'
C1'
N9
DG
DG
DG
11
11
11
N
1
4.55
0.50
113.10
117.65
A
A
A
N7
C8
N9
DG
DG
DG
11
11
11
N
1
-2.69
0.40
106.40
103.71
A
A
A
C8
N9
C4
DG
DG
DG
11
11
11
N
1
2.64
0.30
108.30
110.94
B
B
B
O4'
C1'
N1
DC
DC
DC
12
12
12
N
1
3.84
0.50
113.80
117.64
B
B
B
N7
C8
N9
DA
DA
DA
13
13
13
N
1
-2.60
0.40
105.80
103.20
B
B
B
C8
N9
C4
DA
DA
DA
13
13
13
N
1
2.11
0.30
108.30
110.41
B
B
B
O4'
C1'
N1
DC
DC
DC
14
14
14
N
1
2.53
0.30
108.30
110.83
B
B
B
O4'
C1'
N1
DC
DC
DC
15
15
15
N
1
2.98
0.30
108.30
111.28
B
B
B
O4'
C1'
N9
DA
DA
DA
16
16
16
N
1
3.73
0.50
113.80
117.53
B
B
B
N7
C8
N9
DA
DA
DA
16
16
16
N
1
2.78
0.30
108.30
111.08
B
B
B
O4'
C1'
N1
DC
DC
DC
17
17
17
N
1
2.53
0.30
108.30
110.83
B
B
B
O4'
C1'
N1
DC
DC
DC
18
18
18
N
1
3.19
0.30
108.30
111.49
B
B
B
O4'
C1'
N1
DT
DT
DT
19
19
19
N
1
2.51
0.30
108.30
110.81
B
B
B
O4'
C1'
N9
DG
DG
DG
20
20
20
N
1
4.55
0.50
113.10
117.65
B
B
B
N7
C8
N9
DG
DG
DG
20
20
20
N
1
-2.75
0.40
106.40
103.65
B
B
B
C8
N9
C4
DG
DG
DG
20
20
20
N
1
3.08
0.30
108.30
111.38
B
B
B
O4'
C1'
N1
DC
DC
DC
21
21
21
N
1
2.55
0.30
108.30
110.85
B
B
B
O4'
C1'
N1
DC
DC
DC
22
22
22
N
model building
X-PLOR
3.1
refinement
X-PLOR
3.1
phasing
X-PLOR
3.1
THE SOLUTION NMR STRUCTURE OF AN R-STYRENE OXIDE ADDUCT AT THE N2 POSITION OF GUANINE OF AN 11 BASE-PAIR OLIGONUCLEOTIDE SEQUENCE CODING FOR AMINO ACIDS 11-13 OF THE PRODUCT OF THE N-RAS PROTOONCOGENE, MINIMIZED AVERAGE STRUCTURE
1
N
N
2
N
N
covale
1.614
both
A
DG
5
A
O3'
DG
5
1_555
A
GSR
6
A
P
GSR
6
1_555
covale
1.614
both
A
GSR
6
A
O3'
GSR
6
1_555
A
DT
7
A
P
DT
7
1_555
hydrog
WATSON-CRICK
A
DG
1
A
N1
DG
1
1_555
B
DC
22
B
N3
DC
11
1_555
hydrog
WATSON-CRICK
A
DG
1
A
N2
DG
1
1_555
B
DC
22
B
O2
DC
11
1_555
hydrog
WATSON-CRICK
A
DG
1
A
O6
DG
1
1_555
B
DC
22
B
N4
DC
11
1_555
hydrog
WATSON-CRICK
A
DG
2
A
N1
DG
2
1_555
B
DC
21
B
N3
DC
10
1_555
hydrog
WATSON-CRICK
A
DG
2
A
N2
DG
2
1_555
B
DC
21
B
O2
DC
10
1_555
hydrog
WATSON-CRICK
A
DG
2
A
O6
DG
2
1_555
B
DC
21
B
N4
DC
10
1_555
hydrog
WATSON-CRICK
A
DC
3
A
N3
DC
3
1_555
B
DG
20
B
N1
DG
9
1_555
hydrog
WATSON-CRICK
A
DC
3
A
N4
DC
3
1_555
B
DG
20
B
O6
DG
9
1_555
hydrog
WATSON-CRICK
A
DC
3
A
O2
DC
3
1_555
B
DG
20
B
N2
DG
9
1_555
hydrog
WATSON-CRICK
A
DA
4
A
N1
DA
4
1_555
B
DT
19
B
N3
DT
8
1_555
hydrog
WATSON-CRICK
A
DA
4
A
N6
DA
4
1_555
B
DT
19
B
O4
DT
8
1_555
hydrog
WATSON-CRICK
A
DG
5
A
N1
DG
5
1_555
B
DC
18
B
N3
DC
7
1_555
hydrog
WATSON-CRICK
A
DG
5
A
N2
DG
5
1_555
B
DC
18
B
O2
DC
7
1_555
hydrog
WATSON-CRICK
A
DG
5
A
O6
DG
5
1_555
B
DC
18
B
N4
DC
7
1_555
hydrog
WATSON-CRICK
A
GSR
6
A
N1
GSR
6
1_555
B
DC
17
B
N3
DC
6
1_555
hydrog
WATSON-CRICK
A
GSR
6
A
N2
GSR
6
1_555
B
DC
17
B
O2
DC
6
1_555
hydrog
WATSON-CRICK
A
GSR
6
A
O6
GSR
6
1_555
B
DC
17
B
N4
DC
6
1_555
hydrog
WATSON-CRICK
A
DT
7
A
N3
DT
7
1_555
B
DA
16
B
N1
DA
5
1_555
hydrog
WATSON-CRICK
A
DT
7
A
O4
DT
7
1_555
B
DA
16
B
N6
DA
5
1_555
hydrog
WATSON-CRICK
A
DG
8
A
N1
DG
8
1_555
B
DC
15
B
N3
DC
4
1_555
hydrog
WATSON-CRICK
A
DG
8
A
N2
DG
8
1_555
B
DC
15
B
O2
DC
4
1_555
hydrog
WATSON-CRICK
A
DG
8
A
O6
DG
8
1_555
B
DC
15
B
N4
DC
4
1_555
hydrog
WATSON-CRICK
A
DG
9
A
N1
DG
9
1_555
B
DC
14
B
N3
DC
3
1_555
hydrog
WATSON-CRICK
A
DG
9
A
N2
DG
9
1_555
B
DC
14
B
O2
DC
3
1_555
hydrog
WATSON-CRICK
A
DG
9
A
O6
DG
9
1_555
B
DC
14
B
N4
DC
3
1_555
hydrog
WATSON-CRICK
A
DT
10
A
N3
DT
10
1_555
B
DA
13
B
N1
DA
2
1_555
hydrog
WATSON-CRICK
A
DT
10
A
O4
DT
10
1_555
B
DA
13
B
N6
DA
2
1_555
hydrog
WATSON-CRICK
A
DG
11
A
N1
DG
11
1_555
B
DC
12
B
N3
DC
1
1_555
hydrog
WATSON-CRICK
A
DG
11
A
N2
DG
11
1_555
B
DC
12
B
O2
DC
1
1_555
hydrog
WATSON-CRICK
A
DG
11
A
O6
DG
11
1_555
B
DC
12
B
N4
DC
1
1_555
DNA
DNA DUPLEX, HUMAN N-RAS GENE, CODON 12 SEQUENCE, R-STYRENE OXIDE, MINOR GROOVE ADDUCT, DEOXYRIBONUCLEIC ACID, DNA
1AF1
PDB
1
1AF1
1AF1
PDB
2
1AF1
1
11
1AF1
1
11
1AF1
A
1
1
11
12
22
1AF1
12
22
1AF1
B
2
1
11
1
P 1