0.014059 0.000000 0.002393 0.000000 0.013772 0.000000 0.000000 0.000000 0.013963 0.00000 0.00000 0.00000 De Simone, G. Balliano, G. Milla, P. Gallina, C. Giordano, C. Tarricone, C. Rizzi, M. Bolognesi, M. Ascenzi, P. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 4 90.00 99.66 90.00 71.130 72.610 72.650 C3 H7 N O2 89.093 y ALANINE L-peptide linking C17 H26 N4 O3 334.413 2-[N'-(4-AMINO-BUTYL)-HYDRAZINOCARBONYL]-PYRROLIDINE-1-CARBOXYLIC ACID BENZYL ESTER peptide-like C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C8 H15 N O6 221.208 2-acetamido-2-deoxy-beta-D-glucopyranose N-acetyl-beta-D-glucosamine; 2-acetamido-2-deoxy-beta-D-glucose; 2-acetamido-2-deoxy-D-glucose; 2-acetamido-2-deoxy-glucose; N-ACETYL-D-GLUCOSAMINE D-saccharide, beta linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C9 H11 N O6 S 261.252 n O-SULFO-L-TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking UK J.Mol.Biol. JMOBAK 0070 0022-2836 269 558 569 10.1006/jmbi.1997.1037 9217260 Human alpha-thrombin inhibition by the highly selective compounds N-ethoxycarbonyl-D-Phe-Pro-alpha-azaLys p-nitrophenyl ester and N-carbobenzoxy-Pro-alpha-azaLys p-nitrophenyl ester: a kinetic, thermodynamic and X-ray crystallographic study. 1997 10.2210/pdb1afe/pdb pdb_00001afe NAG H 400 HAS WRONG CHIRALITY AT ATOM C2 NAG H 400 HAS WRONG CHIRALITY AT ATOM C4 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 298 1 IMAGE PLATE 1995-12 RIGAKU RAXIS IIC GRAPHITE(002) M x-ray 1 1.5418 1.0 1.5418 ROTATING ANODE RIGAKU RUH2R 4096.534 ALPHA-THROMBIN (SMALL SUBUNIT) 3.4.21.5 1 nat polymer 29780.219 ALPHA-THROMBIN (LARGE SUBUNIT) 3.4.21.5 1 nat polymer 1363.399 HIRUGEN 1 nat polymer 221.208 2-acetamido-2-deoxy-beta-D-glucopyranose 1 man non-polymer 334.413 2-[N'-(4-AMINO-BUTYL)-HYDRAZINOCARBONYL]-PYRROLIDINE-1-CARBOXYLIC ACID BENZYL ESTER 1 syn non-polymer 18.015 water 150 nat water N-ACETYLHIRUDIN 53 - 64 WITH SULFATO-TYR 63 no no TFGSGEADCGLRPLFEKKSLEDKTERELLESYIDGR TFGSGEADCGLRPLFEKKSLEDKTERELLESYIDGR L polypeptide(L) no no IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISM LEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVL QVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFY THVFRLKKWIQKVIDQFGE IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISM LEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVL QVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFY THVFRLKKWIQKVIDQFGE H polypeptide(L) no yes DFEEIPEE(TYS)L DFEEIPEEYL I polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n human Homo sample 9606 BLOOD Homo sapiens PLASMA human Homo sample 9606 BLOOD Homo sapiens PLASMA medicinal leech Hirudo sample 6421 Hirudo medicinalis 1 2.62 53.11 7.0 PEG 4000 15%, PH 7.0, 5X10-3 M AZALYS COMPOUND chem_comp database_PDB_caveat entity pdbx_chem_comp_identifier pdbx_entity_nonpoly pdbx_unobs_or_zero_occ_atoms pdbx_unobs_or_zero_occ_residues software struct_conn struct_site struct_site_gen chem_comp database_2 pdbx_initial_refinement_model pdbx_unobs_or_zero_occ_atoms pdbx_unobs_or_zero_occ_residues repository Initial release Carbohydrate remediation repository Remediation Version format compliance Atomic model Database references Derived calculations Non-polymer description Structure summary Version format compliance Non-polymer description Advisory Data collection Derived calculations Refinement description Structure summary Advisory Database references Refinement description Structure summary 1 0 1997-12-03 1 1 2008-03-24 1 2 2011-07-13 1 3 2012-04-11 1 4 2020-07-29 1 5 2023-08-02 _chem_comp.name _chem_comp.type _entity.pdbx_description _pdbx_entity_nonpoly.name _software.name _struct_conn.pdbx_dist_value _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_role _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _chem_comp.pdbx_synonyms _database_2.pdbx_DOI _database_2.pdbx_database_accession DGlcpNAcb N-acetyl-b-D-glucopyranosamine b-D-GlcpNAc GlcNAc Y BNL 1997-03-06 REL REL NAG 2-acetamido-2-deoxy-beta-D-glucopyranose ALZ 2-[N'-(4-AMINO-BUTYL)-HYDRAZINOCARBONYL]-PYRROLIDINE-1-CARBOXYLIC ACID BENZYL ESTER HOH water THROMBIN IS CLEAVED BETWEEN RESIDUES 15 AND 16. CHAIN INDICATOR *L* IS USED FOR RESIDUES 1H - 15 AND CHAIN INDICATOR *H* IS USED FOR RESIDUES 16 - 247. CHAIN INDICATOR *I* IS USED FOR HIRUGEN INHIBITOR. CHYMOTRYPSIN NUMBERING (RATHER THAN SEQUENTIAL) SYSTEM IS USED, BASED ON THE TOPOLOGICAL ALIGNMENT WITH THE STRUCTURE OF CHYMOTRYPSIN (W.BODE ET AL., 1989, EMBO J. 8, 3467-3475). 1HAH PDB ENTRY 1HAH PDB experimental model NAG 400 4 NAG NAG 400 H ALZ 600 5 ALZ ALZ 600 H HOH 432 6 HOH HOH 432 L HOH 437 6 HOH HOH 437 L HOH 438 6 HOH HOH 438 L HOH 445 6 HOH HOH 445 L HOH 448 6 HOH HOH 448 L HOH 459 6 HOH HOH 459 L HOH 460 6 HOH HOH 460 L HOH 463 6 HOH HOH 463 L HOH 492 6 HOH HOH 492 L HOH 503 6 HOH HOH 503 L HOH 507 6 HOH HOH 507 L HOH 518 6 HOH HOH 518 L HOH 530 6 HOH HOH 530 L HOH 535 6 HOH HOH 535 L HOH 536 6 HOH HOH 536 L HOH 540 6 HOH HOH 540 L HOH 542 6 HOH HOH 542 L HOH 558 6 HOH HOH 558 L HOH 559 6 HOH HOH 559 L HOH 401 6 HOH HOH 401 H HOH 402 6 HOH HOH 402 H HOH 403 6 HOH HOH 403 H HOH 404 6 HOH HOH 404 H HOH 405 6 HOH HOH 405 H HOH 406 6 HOH HOH 406 H HOH 407 6 HOH HOH 407 H HOH 408 6 HOH HOH 408 H HOH 409 6 HOH HOH 409 H HOH 410 6 HOH HOH 410 H HOH 411 6 HOH HOH 411 H HOH 412 6 HOH HOH 412 H HOH 413 6 HOH HOH 413 H HOH 414 6 HOH HOH 414 H HOH 415 6 HOH HOH 415 H HOH 416 6 HOH HOH 416 H HOH 417 6 HOH HOH 417 H HOH 418 6 HOH HOH 418 H HOH 419 6 HOH HOH 419 H HOH 420 6 HOH HOH 420 H HOH 421 6 HOH HOH 421 H HOH 422 6 HOH HOH 422 H HOH 423 6 HOH HOH 423 H HOH 424 6 HOH HOH 424 H HOH 425 6 HOH HOH 425 H HOH 426 6 HOH HOH 426 H HOH 427 6 HOH HOH 427 H HOH 428 6 HOH HOH 428 H HOH 429 6 HOH HOH 429 H HOH 430 6 HOH HOH 430 H HOH 431 6 HOH HOH 431 H HOH 433 6 HOH HOH 433 H HOH 434 6 HOH HOH 434 H HOH 435 6 HOH HOH 435 H HOH 436 6 HOH HOH 436 H HOH 439 6 HOH HOH 439 H HOH 440 6 HOH HOH 440 H HOH 441 6 HOH HOH 441 H HOH 442 6 HOH HOH 442 H HOH 443 6 HOH HOH 443 H HOH 444 6 HOH HOH 444 H HOH 446 6 HOH HOH 446 H HOH 447 6 HOH HOH 447 H HOH 449 6 HOH HOH 449 H HOH 450 6 HOH HOH 450 H HOH 451 6 HOH HOH 451 H HOH 452 6 HOH HOH 452 H HOH 453 6 HOH HOH 453 H HOH 454 6 HOH HOH 454 H HOH 455 6 HOH HOH 455 H HOH 456 6 HOH HOH 456 H HOH 457 6 HOH HOH 457 H HOH 458 6 HOH HOH 458 H HOH 461 6 HOH HOH 461 H HOH 462 6 HOH HOH 462 H HOH 464 6 HOH HOH 464 H HOH 465 6 HOH HOH 465 H HOH 466 6 HOH HOH 466 H HOH 467 6 HOH HOH 467 H HOH 468 6 HOH HOH 468 H HOH 469 6 HOH HOH 469 H HOH 470 6 HOH HOH 470 H HOH 472 6 HOH HOH 472 H HOH 473 6 HOH HOH 473 H HOH 474 6 HOH HOH 474 H HOH 475 6 HOH HOH 475 H HOH 476 6 HOH HOH 476 H HOH 477 6 HOH HOH 477 H HOH 478 6 HOH HOH 478 H HOH 479 6 HOH HOH 479 H HOH 480 6 HOH HOH 480 H HOH 481 6 HOH HOH 481 H HOH 483 6 HOH HOH 483 H HOH 484 6 HOH HOH 484 H HOH 485 6 HOH HOH 485 H HOH 487 6 HOH HOH 487 H HOH 488 6 HOH HOH 488 H HOH 489 6 HOH HOH 489 H HOH 491 6 HOH HOH 491 H HOH 493 6 HOH HOH 493 H HOH 494 6 HOH HOH 494 H HOH 496 6 HOH HOH 496 H HOH 497 6 HOH HOH 497 H HOH 498 6 HOH HOH 498 H HOH 499 6 HOH HOH 499 H HOH 500 6 HOH HOH 500 H HOH 501 6 HOH HOH 501 H HOH 502 6 HOH HOH 502 H HOH 505 6 HOH HOH 505 H HOH 506 6 HOH HOH 506 H HOH 508 6 HOH HOH 508 H HOH 509 6 HOH HOH 509 H HOH 510 6 HOH HOH 510 H HOH 511 6 HOH HOH 511 H HOH 512 6 HOH HOH 512 H HOH 513 6 HOH HOH 513 H HOH 514 6 HOH HOH 514 H HOH 515 6 HOH HOH 515 H HOH 516 6 HOH HOH 516 H HOH 517 6 HOH HOH 517 H HOH 519 6 HOH HOH 519 H HOH 522 6 HOH HOH 522 H HOH 524 6 HOH HOH 524 H HOH 525 6 HOH HOH 525 H HOH 526 6 HOH HOH 526 H HOH 527 6 HOH HOH 527 H HOH 528 6 HOH HOH 528 H HOH 529 6 HOH HOH 529 H HOH 531 6 HOH HOH 531 H HOH 532 6 HOH HOH 532 H HOH 533 6 HOH HOH 533 H HOH 534 6 HOH HOH 534 H HOH 537 6 HOH HOH 537 H HOH 538 6 HOH HOH 538 H HOH 539 6 HOH HOH 539 H HOH 543 6 HOH HOH 543 H HOH 544 6 HOH HOH 544 H HOH 545 6 HOH HOH 545 H HOH 548 6 HOH HOH 548 H HOH 549 6 HOH HOH 549 H HOH 550 6 HOH HOH 550 H HOH 551 6 HOH HOH 551 H HOH 552 6 HOH HOH 552 H HOH 553 6 HOH HOH 553 H HOH 554 6 HOH HOH 554 H HOH 555 6 HOH HOH 555 H HOH 557 6 HOH HOH 557 H HOH 560 6 HOH HOH 560 H HOH 562 6 HOH HOH 562 H HOH 482 6 HOH HOH 482 I HOH 504 6 HOH HOH 504 I THR 1 n 1 H THR 1 L PHE 1 n 2 G PHE 1 L GLY 1 n 3 F GLY 1 L SER 1 n 4 E SER 1 L GLY 1 n 5 D GLY 1 L GLU 1 n 6 C GLU 1 L ALA 1 n 7 B ALA 1 L ASP 1 n 8 A ASP 1 L CYS 1 n 9 CYS 1 L GLY 2 n 10 GLY 2 L LEU 3 n 11 LEU 3 L ARG 4 n 12 ARG 4 L PRO 5 n 13 PRO 5 L LEU 6 n 14 LEU 6 L PHE 7 n 15 PHE 7 L GLU 8 n 16 GLU 8 L LYS 9 n 17 LYS 9 L LYS 10 n 18 LYS 10 L SER 11 n 19 SER 11 L LEU 12 n 20 LEU 12 L GLU 13 n 21 GLU 13 L ASP 14 n 22 ASP 14 L LYS 14 n 23 A LYS 14 L THR 14 n 24 B THR 14 L GLU 14 n 25 C GLU 14 L ARG 14 n 26 D ARG 14 L GLU 14 n 27 E GLU 14 L LEU 14 n 28 F LEU 14 L LEU 14 n 29 G LEU 14 L GLU 14 n 30 H GLU 14 L SER 14 n 31 I SER 14 L TYR 14 n 32 J TYR 14 L ILE 14 n 33 K ILE 14 L ASP 14 n 34 L ASP 14 L GLY 14 n 35 M GLY 14 L ARG 15 n 36 ARG 15 L ILE 16 n 1 ILE 16 H VAL 17 n 2 VAL 17 H GLU 18 n 3 GLU 18 H GLY 19 n 4 GLY 19 H SER 20 n 5 SER 20 H ASP 21 n 6 ASP 21 H ALA 22 n 7 ALA 22 H GLU 23 n 8 GLU 23 H ILE 24 n 9 ILE 24 H GLY 25 n 10 GLY 25 H MET 26 n 11 MET 26 H SER 27 n 12 SER 27 H PRO 28 n 13 PRO 28 H TRP 29 n 14 TRP 29 H GLN 30 n 15 GLN 30 H VAL 31 n 16 VAL 31 H MET 32 n 17 MET 32 H LEU 33 n 18 LEU 33 H PHE 34 n 19 PHE 34 H ARG 35 n 20 ARG 35 H LYS 36 n 21 LYS 36 H SER 36 n 22 A SER 36 H PRO 37 n 23 PRO 37 H GLN 38 n 24 GLN 38 H GLU 39 n 25 GLU 39 H LEU 40 n 26 LEU 40 H LEU 41 n 27 LEU 41 H CYS 42 n 28 CYS 42 H GLY 43 n 29 GLY 43 H ALA 44 n 30 ALA 44 H SER 45 n 31 SER 45 H LEU 46 n 32 LEU 46 H ILE 47 n 33 ILE 47 H SER 48 n 34 SER 48 H ASP 49 n 35 ASP 49 H ARG 50 n 36 ARG 50 H TRP 51 n 37 TRP 51 H VAL 52 n 38 VAL 52 H LEU 53 n 39 LEU 53 H THR 54 n 40 THR 54 H ALA 55 n 41 ALA 55 H ALA 56 n 42 ALA 56 H HIS 57 n 43 HIS 57 H CYS 58 n 44 CYS 58 H LEU 59 n 45 LEU 59 H LEU 60 n 46 LEU 60 H TYR 60 n 47 A TYR 60 H PRO 60 n 48 B PRO 60 H PRO 60 n 49 C PRO 60 H TRP 60 n 50 D TRP 60 H ASP 60 n 51 E ASP 60 H LYS 60 n 52 F LYS 60 H ASN 60 n 53 G ASN 60 H PHE 60 n 54 H PHE 60 H THR 60 n 55 I THR 60 H GLU 61 n 56 GLU 61 H ASN 62 n 57 ASN 62 H ASP 63 n 58 ASP 63 H LEU 64 n 59 LEU 64 H LEU 65 n 60 LEU 65 H VAL 66 n 61 VAL 66 H ARG 67 n 62 ARG 67 H ILE 68 n 63 ILE 68 H GLY 69 n 64 GLY 69 H LYS 70 n 65 LYS 70 H HIS 71 n 66 HIS 71 H SER 72 n 67 SER 72 H ARG 73 n 68 ARG 73 H THR 74 n 69 THR 74 H ARG 75 n 70 ARG 75 H TYR 76 n 71 TYR 76 H GLU 77 n 72 GLU 77 H ARG 77 n 73 A ARG 77 H ASN 78 n 74 ASN 78 H ILE 79 n 75 ILE 79 H GLU 80 n 76 GLU 80 H LYS 81 n 77 LYS 81 H ILE 82 n 78 ILE 82 H SER 83 n 79 SER 83 H MET 84 n 80 MET 84 H LEU 85 n 81 LEU 85 H GLU 86 n 82 GLU 86 H LYS 87 n 83 LYS 87 H ILE 88 n 84 ILE 88 H TYR 89 n 85 TYR 89 H ILE 90 n 86 ILE 90 H HIS 91 n 87 HIS 91 H PRO 92 n 88 PRO 92 H ARG 93 n 89 ARG 93 H TYR 94 n 90 TYR 94 H ASN 95 n 91 ASN 95 H TRP 96 n 92 TRP 96 H ARG 97 n 93 ARG 97 H GLU 97 n 94 A GLU 97 H ASN 98 n 95 ASN 98 H LEU 99 n 96 LEU 99 H ASP 100 n 97 ASP 100 H ARG 101 n 98 ARG 101 H ASP 102 n 99 ASP 102 H ILE 103 n 100 ILE 103 H ALA 104 n 101 ALA 104 H LEU 105 n 102 LEU 105 H MET 106 n 103 MET 106 H LYS 107 n 104 LYS 107 H LEU 108 n 105 LEU 108 H LYS 109 n 106 LYS 109 H LYS 110 n 107 LYS 110 H PRO 111 n 108 PRO 111 H VAL 112 n 109 VAL 112 H ALA 113 n 110 ALA 113 H PHE 114 n 111 PHE 114 H SER 115 n 112 SER 115 H ASP 116 n 113 ASP 116 H TYR 117 n 114 TYR 117 H ILE 118 n 115 ILE 118 H HIS 119 n 116 HIS 119 H PRO 120 n 117 PRO 120 H VAL 121 n 118 VAL 121 H CYS 122 n 119 CYS 122 H LEU 123 n 120 LEU 123 H PRO 124 n 121 PRO 124 H ASP 125 n 122 ASP 125 H ARG 126 n 123 ARG 126 H GLU 127 n 124 GLU 127 H THR 128 n 125 THR 128 H ALA 129 n 126 ALA 129 H ALA 129 n 127 A ALA 129 H SER 129 n 128 B SER 129 H LEU 129 n 129 C LEU 129 H LEU 130 n 130 LEU 130 H GLN 131 n 131 GLN 131 H ALA 132 n 132 ALA 132 H GLY 133 n 133 GLY 133 H TYR 134 n 134 TYR 134 H LYS 135 n 135 LYS 135 H GLY 136 n 136 GLY 136 H ARG 137 n 137 ARG 137 H VAL 138 n 138 VAL 138 H THR 139 n 139 THR 139 H GLY 140 n 140 GLY 140 H TRP 141 n 141 TRP 141 H GLY 142 n 142 GLY 142 H ASN 143 n 143 ASN 143 H LEU 144 n 144 LEU 144 H LYS 145 n 145 LYS 145 H GLU 146 n 146 GLU 146 H THR 147 n 147 THR 147 H TRP 148 n 148 TRP 148 H n 149 A 148 H n 150 B 148 H n 151 C 148 H n 152 D 148 H n 153 E 148 H n 154 F 148 H GLY 150 n 155 GLY 150 H GLN 151 n 156 GLN 151 H PRO 152 n 157 PRO 152 H SER 153 n 158 SER 153 H VAL 154 n 159 VAL 154 H LEU 155 n 160 LEU 155 H GLN 156 n 161 GLN 156 H VAL 157 n 162 VAL 157 H VAL 158 n 163 VAL 158 H ASN 159 n 164 ASN 159 H LEU 160 n 165 LEU 160 H PRO 161 n 166 PRO 161 H ILE 162 n 167 ILE 162 H VAL 163 n 168 VAL 163 H GLU 164 n 169 GLU 164 H ARG 165 n 170 ARG 165 H PRO 166 n 171 PRO 166 H VAL 167 n 172 VAL 167 H CYS 168 n 173 CYS 168 H LYS 169 n 174 LYS 169 H ASP 170 n 175 ASP 170 H SER 171 n 176 SER 171 H THR 172 n 177 THR 172 H ARG 173 n 178 ARG 173 H ILE 174 n 179 ILE 174 H ARG 175 n 180 ARG 175 H ILE 176 n 181 ILE 176 H THR 177 n 182 THR 177 H ASP 178 n 183 ASP 178 H ASN 179 n 184 ASN 179 H MET 180 n 185 MET 180 H PHE 181 n 186 PHE 181 H CYS 182 n 187 CYS 182 H ALA 183 n 188 ALA 183 H GLY 184 n 189 GLY 184 H TYR 184 n 190 A TYR 184 H LYS 185 n 191 LYS 185 H PRO 186 n 192 PRO 186 H ASP 186 n 193 A ASP 186 H GLU 186 n 194 B GLU 186 H GLY 186 n 195 C GLY 186 H LYS 186 n 196 D LYS 186 H ARG 187 n 197 ARG 187 H GLY 188 n 198 GLY 188 H ASP 189 n 199 ASP 189 H ALA 190 n 200 ALA 190 H CYS 191 n 201 CYS 191 H GLU 192 n 202 GLU 192 H GLY 193 n 203 GLY 193 H ASP 194 n 204 ASP 194 H SER 195 n 205 SER 195 H GLY 196 n 206 GLY 196 H GLY 197 n 207 GLY 197 H PRO 198 n 208 PRO 198 H PHE 199 n 209 PHE 199 H VAL 200 n 210 VAL 200 H MET 201 n 211 MET 201 H LYS 202 n 212 LYS 202 H SER 203 n 213 SER 203 H PRO 204 n 214 PRO 204 H PHE 204 n 215 A PHE 204 H ASN 204 n 216 B ASN 204 H ASN 205 n 217 ASN 205 H ARG 206 n 218 ARG 206 H TRP 207 n 219 TRP 207 H TYR 208 n 220 TYR 208 H GLN 209 n 221 GLN 209 H MET 210 n 222 MET 210 H GLY 211 n 223 GLY 211 H ILE 212 n 224 ILE 212 H VAL 213 n 225 VAL 213 H SER 214 n 226 SER 214 H TRP 215 n 227 TRP 215 H GLY 216 n 228 GLY 216 H GLU 217 n 229 GLU 217 H GLY 219 n 230 GLY 219 H CYS 220 n 231 CYS 220 H ASP 221 n 232 ASP 221 H ARG 221 n 233 A ARG 221 H ASP 222 n 234 ASP 222 H GLY 223 n 235 GLY 223 H LYS 224 n 236 LYS 224 H TYR 225 n 237 TYR 225 H GLY 226 n 238 GLY 226 H PHE 227 n 239 PHE 227 H TYR 228 n 240 TYR 228 H THR 229 n 241 THR 229 H HIS 230 n 242 HIS 230 H VAL 231 n 243 VAL 231 H PHE 232 n 244 PHE 232 H ARG 233 n 245 ARG 233 H LEU 234 n 246 LEU 234 H LYS 235 n 247 LYS 235 H LYS 236 n 248 LYS 236 H TRP 237 n 249 TRP 237 H ILE 238 n 250 ILE 238 H GLN 239 n 251 GLN 239 H LYS 240 n 252 LYS 240 H VAL 241 n 253 VAL 241 H ILE 242 n 254 ILE 242 H ASP 243 n 255 ASP 243 H GLN 244 n 256 GLN 244 H PHE 245 n 257 PHE 245 H GLY 246 n 258 GLY 246 H GLU 247 n 259 GLU 247 H ASP 55 n 1 ASP 55 I PHE 56 n 2 PHE 56 I GLU 57 n 3 GLU 57 I GLU 58 n 4 GLU 58 I ILE 59 n 5 ILE 59 I PRO 60 n 6 PRO 60 I GLU 61 n 7 GLU 61 I GLU 62 n 8 GLU 62 I TYS 63 n 9 TYS 63 I LEU 64 n 10 LEU 64 I 0.179 author_defined_assembly 3 trimeric G H ASN 60 GLYCOSYLATION SITE B ASN 53 ASN I TYS 63 O-SULFO-L-TYROSINE C TYS 9 TYR 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 H O LYS 81 B O LYS 77 H N ILE 68 B N ILE 63 H O LEU 65 B O LEU 60 H N PHE 34 B N PHE 19 H O VAL 31 B O VAL 16 H N ALA 44 B N ALA 30 H O VAL 52 B O VAL 38 H N MET 106 B N MET 103 H O LEU 105 B O LEU 102 H N TYR 89 B N TYR 85 H O GLY 136 B O GLY 136 H N LEU 160 B N LEU 165 H O PHE 181 B O PHE 186 H N TYR 228 B N TYR 240 H O PHE 227 B O PHE 239 H N TRP 215 B N TRP 227 H O TYR 208 B O TYR 220 H N MET 201 B N MET 211 E 1 L C SER 1 A C SER 4 0 Y E 1 L O SER 1 A O SER 4 0 Y E 1 L CB SER 1 A CB SER 4 0 Y E 1 L OG SER 1 A OG SER 4 0 Y D 1 L N GLY 1 A N GLY 5 0 Y D 1 L C GLY 1 A C GLY 5 0 Y D 1 L O GLY 1 A O GLY 5 0 Y A 1 L CD LYS 14 A CD LYS 23 0 Y A 1 L CE LYS 14 A CE LYS 23 0 Y A 1 L NZ LYS 14 A NZ LYS 23 0 Y D 1 L CG ARG 14 A CG ARG 26 0 Y D 1 L CD ARG 14 A CD ARG 26 0 Y D 1 L NE ARG 14 A NE ARG 26 0 Y D 1 L CZ ARG 14 A CZ ARG 26 0 Y D 1 L NH1 ARG 14 A NH1 ARG 26 0 Y D 1 L NH2 ARG 14 A NH2 ARG 26 0 Y G 1 L CD2 LEU 14 A CD2 LEU 29 0 Y K 1 L N ILE 14 A N ILE 33 0 Y K 1 L CA ILE 14 A CA ILE 33 0 Y K 1 L C ILE 14 A C ILE 33 0 Y K 1 L O ILE 14 A O ILE 33 0 Y 1 L N ARG 15 A N ARG 36 0 Y 1 L C ARG 15 A C ARG 36 0 Y 1 L O ARG 15 A O ARG 36 0 Y 1 L CB ARG 15 A CB ARG 36 0 Y 1 L CG ARG 15 A CG ARG 36 0 Y 1 L CD ARG 15 A CD ARG 36 0 Y 1 L CZ ARG 15 A CZ ARG 36 0 Y 1 L NH1 ARG 15 A NH1 ARG 36 0 Y 1 L NH2 ARG 15 A NH2 ARG 36 0 Y 1 L OXT ARG 15 A OXT ARG 36 0 Y 1 H CD ARG 50 B CD ARG 36 0 Y 1 H NH1 ARG 50 B NH1 ARG 36 0 Y 1 H NH2 ARG 50 B NH2 ARG 36 0 Y 1 H OD1 ASN 62 B OD1 ASN 57 0 Y 1 H ND2 ASN 62 B ND2 ASN 57 0 Y 1 H CG ARG 75 B CG ARG 70 0 Y 1 H NE ARG 75 B NE ARG 70 0 Y 1 H CZ ARG 75 B CZ ARG 70 0 Y 1 H NH1 ARG 75 B NH1 ARG 70 0 Y 1 H NH2 ARG 75 B NH2 ARG 70 0 Y 1 H CD LYS 87 B CD LYS 83 0 Y 1 H CE LYS 87 B CE LYS 83 0 Y 1 H NZ LYS 87 B NZ LYS 83 0 Y 1 H NH2 ARG 97 B NH2 ARG 93 0 Y 1 H CE LYS 107 B CE LYS 104 0 Y 1 H NZ LYS 107 B NZ LYS 104 0 Y 1 H NZ LYS 109 B NZ LYS 106 0 Y 1 H CG LYS 110 B CG LYS 107 0 Y 1 H CD LYS 110 B CD LYS 107 0 Y 1 H CE LYS 110 B CE LYS 107 0 Y 1 H NZ LYS 110 B NZ LYS 107 0 Y 1 H CD ARG 126 B CD ARG 123 0 Y 1 H NE ARG 126 B NE ARG 123 0 Y 1 H CZ ARG 126 B CZ ARG 123 0 Y 1 H NH1 ARG 126 B NH1 ARG 123 0 Y 1 H NH2 ARG 126 B NH2 ARG 123 0 Y B 1 H OG SER 129 B OG SER 128 0 Y 1 H CE LYS 145 B CE LYS 145 0 Y 1 H NZ LYS 145 B NZ LYS 145 0 Y 1 H O THR 147 B O THR 147 0 Y 1 H CB THR 147 B CB THR 147 0 Y 1 H OG1 THR 147 B OG1 THR 147 0 Y 1 H CG2 THR 147 B CG2 THR 147 0 Y 1 H N TRP 148 B N TRP 148 0 Y 1 H CA TRP 148 B CA TRP 148 0 Y 1 H C TRP 148 B C TRP 148 0 Y 1 H O TRP 148 B O TRP 148 0 Y 1 H CB TRP 148 B CB TRP 148 0 Y 1 H N GLY 150 B N GLY 155 0 Y 1 H OG SER 153 B OG SER 158 0 Y A 1 H NH1 ARG 221 B NH1 ARG 233 0 Y A 1 H NH2 ARG 221 B NH2 ARG 233 0 Y 1 H NZ LYS 235 B NZ LYS 247 0 Y 1 H CG LYS 236 B CG LYS 248 0 Y 1 H CD LYS 236 B CD LYS 248 0 Y 1 H CE LYS 236 B CE LYS 248 0 Y 1 H NZ LYS 236 B NZ LYS 248 0 Y 1 H N TRP 237 B N TRP 249 0 Y 1 H CD LYS 240 B CD LYS 252 0 Y 1 H CE LYS 240 B CE LYS 252 0 Y 1 H NZ LYS 240 B NZ LYS 252 0 Y 1 H OD1 ASP 243 B OD1 ASP 255 0 Y 1 H O GLN 244 B O GLN 256 0 Y 1 H CG GLN 244 B CG GLN 256 0 Y 1 H CD GLN 244 B CD GLN 256 0 Y 1 H OE1 GLN 244 B OE1 GLN 256 0 Y 1 H NE2 GLN 244 B NE2 GLN 256 0 Y 1 H CG PHE 245 B CG PHE 257 0 Y 1 H CE1 PHE 245 B CE1 PHE 257 0 Y 1 H CZ PHE 245 B CZ PHE 257 0 Y 1 H C GLY 246 B C GLY 258 0 Y 1 H O GLY 246 B O GLY 258 0 Y 1 I CB ASP 55 C CB ASP 1 0 Y 1 I CG ASP 55 C CG ASP 1 0 Y 1 I OD1 ASP 55 C OD1 ASP 1 0 Y 1 I OD2 ASP 55 C OD2 ASP 1 0 Y 1 I CB GLU 58 C CB GLU 4 0 Y 1 I CG GLU 58 C CG GLU 4 0 Y 1 I CD GLU 58 C CD GLU 4 0 Y 1 I OE1 GLU 58 C OE1 GLU 4 0 Y 1 I OE2 GLU 58 C OE2 GLU 4 0 Y 1 I N PRO 60 C N PRO 6 0 Y 1 I CG PRO 60 C CG PRO 6 0 Y 1 I CD PRO 60 C CD PRO 6 0 Y 1 I CB GLU 61 C CB GLU 7 0 Y 1 I CG GLU 61 C CG GLU 7 0 Y 1 I CD GLU 61 C CD GLU 7 0 Y 1 I OE1 GLU 61 C OE1 GLU 7 0 Y 1 I OE2 GLU 61 C OE2 GLU 7 0 Y 1 I O GLU 62 C O GLU 8 0 Y 1 I CG GLU 62 C CG GLU 8 0 Y 1 I CD GLU 62 C CD GLU 8 0 Y 1 I OE1 GLU 62 C OE1 GLU 8 0 Y 1 I OE2 GLU 62 C OE2 GLU 8 0 Y 1 I CD1 LEU 64 C CD1 LEU 10 0 Y H 1 L THR 1 A THR 1 0 Y G 1 L PHE 1 A PHE 2 0 Y F 1 L GLY 1 A GLY 3 0 Y C 1 L GLU 1 A GLU 6 0 Y L 1 L ASP 14 A ASP 34 0 Y M 1 L GLY 14 A GLY 35 0 Y A 1 H THR 148 B THR 149 1 Y B 1 H ALA 148 B ALA 150 1 Y C 1 H ASN 148 B ASN 151 1 Y D 1 H VAL 148 B VAL 152 1 Y E 1 H GLY 148 B GLY 153 1 Y F 1 H LYS 148 B LYS 154 1 Y 1 H GLU 247 B GLU 259 0 Y 1 H NAG 400 D NAG 0 N 1 H C2 NAG 400 PLANAR 1 H C4 NAG 400 PLANAR G 1 H H ND2 O5 ASN NAG 60 400 2.10 G 1 H H CG C1 ASN NAG 60 400 2.19 1 H H O O HOH HOH 409 444 2.19 1 -3.19 0.50 120.30 117.11 L L L NE CZ NH2 ARG ARG ARG 4 4 4 N 1 4.45 0.50 120.30 124.75 H H H NE CZ NH1 ARG ARG ARG 73 73 73 N 1 -3.05 0.50 120.30 117.25 H H H NE CZ NH2 ARG ARG ARG 73 73 73 N A A A 1 3.22 0.50 120.30 123.52 H H H NE CZ NH1 ARG ARG ARG 77 77 77 N 1 3.26 0.50 120.30 123.56 H H H NE CZ NH1 ARG ARG ARG 93 93 93 N 1 L L CD OE1 GLU GLU 8 8 0.077 0.011 1.252 1.329 N 1 L L C OXT ARG ARG 15 15 0.439 0.019 1.229 1.668 N 1 H H CB CG HIS HIS 230 230 -0.099 0.016 1.492 1.393 N 1 H H C OXT GLU GLU 247 247 0.207 0.019 1.229 1.436 N 1 I I C OXT LEU LEU 64 64 0.374 0.019 1.229 1.603 N 1 L H NH2 O ARG THR 15 172 2.13 1_555 4_556 1 I H OE2 O GLU HOH 58 493 2.18 1_555 2_555 G 1 L PHE 1 -156.55 -135.07 E 1 L SER 1 56.77 3.28 C 1 L GLU 1 -108.60 -139.23 1 L PHE 7 -123.95 -88.49 K 1 L ILE 14 72.79 50.86 L 1 L ASP 14 69.92 120.85 A 1 H SER 36 -162.61 118.84 A 1 H TYR 60 -161.63 78.81 G 1 H ASN 60 -150.42 73.83 1 H HIS 71 -133.75 -58.09 1 H THR 147 -154.01 66.86 1 H ARG 187 -124.82 -167.62 2.0 20.0 21224 24141 88.2 1 TNT BCORREL 1.0 DIFFERENCE FOURIER PDB ENTRY 1HAH TNT PROTGEO 2.0 20.0 150 2623 38 0 2435 0.02 2.0 2.0 20.0 1AFE 21141 1. 0.067 1 2.8 88.2 data reduction MOSFLM data reduction ROTAVATA-AGROVATA model building CCP4 refinement TNT 5E data scaling CCP4 (AGROVATA data scaling ROTAVATA phasing CCP4 HUMAN ALPHA-THROMBIN INHIBITION BY CBZ-PRO-AZALYS-ONP 1 N N 2 N N 3 N N 4 N N 5 N N 6 N N 6 N N 6 N N L GLU 8 A GLU 16 HELX_P L LYS 10 A LYS 18 5 1 3 L GLU 14 A GLU 25 HELX_P L SER 14 A SER 31 1 2 7 C I H ALA 56 B ALA 42 HELX_P H CYS 58 B CYS 44 5 3 3 H PRO 60 B PRO 48 HELX_P H TRP 60 B TRP 50 5 4 3 B D H GLU 61 B GLU 56 HELX_P H ASP 63 B ASP 58 5 5 3 H ARG 126 B ARG 123 HELX_P H LEU 129 B LEU 129 1 6 7 C H ARG 165 B ARG 170 HELX_P H SER 171 B SER 176 1 7 7 H VAL 231 B VAL 243 HELX_P H PHE 245 B PHE 257 1 8 15 disulf 2.055 L CYS 1 A SG CYS 9 1_555 H CYS 122 B SG CYS 119 1_555 disulf 2.067 H CYS 42 B SG CYS 28 1_555 H CYS 58 B SG CYS 44 1_555 disulf 1.997 H CYS 168 B SG CYS 173 1_555 H CYS 182 B SG CYS 187 1_555 disulf 2.109 H CYS 191 B SG CYS 201 1_555 H CYS 220 B SG CYS 231 1_555 covale 1.577 one G N-Glycosylation H ASN 60 B ND2 ASN 53 1_555 H NAG 400 D C1 NAG 1_555 covale 1.305 both I GLU 62 C C GLU 8 1_555 I TYS 63 C N TYS 9 1_555 covale 1.309 both I TYS 63 C C TYS 9 1_555 I LEU 64 C N LEU 10 1_555 HYDROLASE/HYDROLASE INHIBITOR COMPLEX (SERINE PROTEASE-INHIBITOR), BLOOD COAGULATION, N-CARBOBENZOXY-PRO-ALFA-AZALYS-P-NITROPHENYLESTER, SERINE PROTEINASE INHIBITION, GLYCOSYLATED PROTEIN, HYDROLASE-HYDROLASE INHIBITOR COMPLEX H SER 36 B SER 22 A 1 H PRO 37 B PRO 23 -2.40 THRB_HUMAN UNP 1 328 P00734 THRB_HUMAN UNP 2 364 P00734 ITHA_HIRME UNP 3 55 P28501 328 363 1AFE 1 15 P00734 L 1 9 36 364 622 1AFE 16 247 P00734 H 2 1 259 55 64 1AFE 55 64 P28501 I 3 1 10 4 3 2 4 anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel H LYS 81 B LYS 77 H MET 84 B MET 80 H LEU 64 B LEU 59 H ILE 68 B ILE 63 H GLN 30 B GLN 15 H ARG 35 B ARG 20 H GLU 39 B GLU 25 H SER 45 B SER 31 H TRP 51 B TRP 37 H THR 54 B THR 40 H ALA 104 B ALA 101 H LEU 108 B LEU 105 H LEU 85 B LEU 81 H ILE 90 B ILE 86 H LYS 135 B LYS 135 H GLY 140 B GLY 140 H GLN 156 B GLN 161 H PRO 161 B PRO 166 H MET 180 B MET 185 H ALA 183 B ALA 188 H GLY 226 B GLY 238 H HIS 230 B HIS 242 H TRP 207 B TRP 219 H GLY 216 B GLY 228 H PRO 198 B PRO 208 H LYS 202 B LYS 212 5 C 1 2 1