1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Mackenzie, K.R.
Prestegard, J.H.
Engelman, D.M.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
1
90.00
90.00
90.00
1.000
1.000
1.000
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
US
Science
SCIEAS
0038
0036-8075
276
131
133
10.1126/science.276.5309.131
9082985
A transmembrane helix dimer: structure and implications.
1997
New Haven : Yale University (Thesis)
US
Thesis, Yale University
2144
Structure Determination of the Dimeric Membrane Spanning Domain of Glycophorin a in Detergent Micelles by Triple Resonance Nuclear Magnetic Resonance Spectroscopy
1996
NE
J.Biomol.NMR
JBNME9
0800
0925-2738
7
256
Leucine Side-Chain Rotamers in a Glycophorin a Transmembrane Peptide as Revealed by Three-Bond Carbon-Carbon Couplings and 13C Chemical Shifts
1996
10.2210/pdb1afo/pdb
pdb_00001afo
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
4454.414
GLYCOPHORIN A
TRANSMEMBRANE PEPTIDE
2
man
polymer
no
no
VQLAHHFSEPEITLIIFGVMAGVIGTILLISYGIRRLIKK
VQLAHHFSEPEITLIIFGVMAGVIGTILLISYGIRRLIKK
A,B
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
human
Homo
MG-T7
Escherichia
sample
ERYTHROCYTE
PLASMA MEMBRANE
9606
PLASMA
Homo sapiens
562
Escherichia coli
MG-T7
PET3A
database_2
pdbx_database_status
pdbx_nmr_software
pdbx_nmr_spectrometer
pdbx_struct_assembly
pdbx_struct_oper_list
repository
Initial release
Version format compliance
Version format compliance
Data collection
Database references
Derived calculations
Other
1
0
1997-09-17
1
1
2008-03-24
1
2
2011-07-13
1
3
2021-10-27
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_database_status.process_site
_pdbx_nmr_software.authors
_pdbx_nmr_software.classification
_pdbx_nmr_spectrometer.manufacturer
_pdbx_nmr_spectrometer.model
Y
BNL
1997-03-11
REL
REL
LEAST RESTRAINT VIOLATIONS
38
20
HNCA
CBCACONH
HCCH-TOCSY
15N NOESY-HSQC
13C NOESY-HSQC
HNHA
SPIN-ECHO DIFF CT HSQC
6.0
313
K
DISTANCE GEOMETRY SIMULATED ANNEALING HYBRID
BRUNGER
refinement
X-PLOR
3.1
BRUNGER
structure calculation
X-PLOR
3.1
500
GE
OMEGA
600
Varian
VARIAN
VAL
62
n
1
VAL
62
A
GLN
63
n
2
GLN
63
A
LEU
64
n
3
LEU
64
A
ALA
65
n
4
ALA
65
A
HIS
66
n
5
HIS
66
A
HIS
67
n
6
HIS
67
A
PHE
68
n
7
PHE
68
A
SER
69
n
8
SER
69
A
GLU
70
n
9
GLU
70
A
PRO
71
n
10
PRO
71
A
GLU
72
n
11
GLU
72
A
ILE
73
n
12
ILE
73
A
THR
74
n
13
THR
74
A
LEU
75
n
14
LEU
75
A
ILE
76
n
15
ILE
76
A
ILE
77
n
16
ILE
77
A
PHE
78
n
17
PHE
78
A
GLY
79
n
18
GLY
79
A
VAL
80
n
19
VAL
80
A
MET
81
n
20
MET
81
A
ALA
82
n
21
ALA
82
A
GLY
83
n
22
GLY
83
A
VAL
84
n
23
VAL
84
A
ILE
85
n
24
ILE
85
A
GLY
86
n
25
GLY
86
A
THR
87
n
26
THR
87
A
ILE
88
n
27
ILE
88
A
LEU
89
n
28
LEU
89
A
LEU
90
n
29
LEU
90
A
ILE
91
n
30
ILE
91
A
SER
92
n
31
SER
92
A
TYR
93
n
32
TYR
93
A
GLY
94
n
33
GLY
94
A
ILE
95
n
34
ILE
95
A
ARG
96
n
35
ARG
96
A
ARG
97
n
36
ARG
97
A
LEU
98
n
37
LEU
98
A
ILE
99
n
38
ILE
99
A
LYS
100
n
39
LYS
100
A
LYS
101
n
40
LYS
101
A
VAL
62
n
1
VAL
62
B
GLN
63
n
2
GLN
63
B
LEU
64
n
3
LEU
64
B
ALA
65
n
4
ALA
65
B
HIS
66
n
5
HIS
66
B
HIS
67
n
6
HIS
67
B
PHE
68
n
7
PHE
68
B
SER
69
n
8
SER
69
B
GLU
70
n
9
GLU
70
B
PRO
71
n
10
PRO
71
B
GLU
72
n
11
GLU
72
B
ILE
73
n
12
ILE
73
B
THR
74
n
13
THR
74
B
LEU
75
n
14
LEU
75
B
ILE
76
n
15
ILE
76
B
ILE
77
n
16
ILE
77
B
PHE
78
n
17
PHE
78
B
GLY
79
n
18
GLY
79
B
VAL
80
n
19
VAL
80
B
MET
81
n
20
MET
81
B
ALA
82
n
21
ALA
82
B
GLY
83
n
22
GLY
83
B
VAL
84
n
23
VAL
84
B
ILE
85
n
24
ILE
85
B
GLY
86
n
25
GLY
86
B
THR
87
n
26
THR
87
B
ILE
88
n
27
ILE
88
B
LEU
89
n
28
LEU
89
B
LEU
90
n
29
LEU
90
B
ILE
91
n
30
ILE
91
B
SER
92
n
31
SER
92
B
TYR
93
n
32
TYR
93
B
GLY
94
n
33
GLY
94
B
ILE
95
n
34
ILE
95
B
ARG
96
n
35
ARG
96
B
ARG
97
n
36
ARG
97
B
LEU
98
n
37
LEU
98
B
ILE
99
n
38
ILE
99
B
LYS
100
n
39
LYS
100
B
LYS
101
n
40
LYS
101
B
author_defined_assembly
2
dimeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
identity operation
0.0000000000
0.0000000000
0.0000000000
2
A
A
O
H
ARG
LYS
96
100
1.49
2
B
B
O
H
GLU
GLU
70
72
1.55
2
B
B
HE21
O
GLN
LEU
63
64
1.60
3
B
B
O
HG1
PRO
THR
71
74
1.47
3
B
B
O
H
ARG
LYS
96
100
1.54
4
A
A
O
H
ARG
LYS
96
100
1.52
6
B
B
O
H
ARG
LYS
96
100
1.60
9
B
B
O
H
ILE
ILE
73
77
1.56
10
B
B
O
H
GLU
GLU
70
72
1.56
11
A
A
O
H
ARG
LYS
96
100
1.54
11
B
B
O
H
GLU
GLU
70
72
1.58
13
A
A
O
H
GLU
GLU
70
72
1.56
19
A
A
O
H
ARG
LYS
96
100
1.58
19
A
A
O
H
GLU
GLU
70
72
1.58
20
B
B
HH21
OXT
ARG
LYS
97
101
1.58
1
A
ARG
96
0.309
SIDE CHAIN
1
A
ARG
97
0.236
SIDE CHAIN
1
B
ARG
96
0.254
SIDE CHAIN
1
B
ARG
97
0.314
SIDE CHAIN
2
A
ARG
96
0.228
SIDE CHAIN
2
A
ARG
97
0.181
SIDE CHAIN
2
B
ARG
96
0.186
SIDE CHAIN
2
B
ARG
97
0.306
SIDE CHAIN
3
A
ARG
96
0.203
SIDE CHAIN
3
A
ARG
97
0.273
SIDE CHAIN
3
B
ARG
96
0.317
SIDE CHAIN
3
B
ARG
97
0.300
SIDE CHAIN
4
A
ARG
96
0.125
SIDE CHAIN
4
A
ARG
97
0.312
SIDE CHAIN
4
B
ARG
96
0.304
SIDE CHAIN
4
B
ARG
97
0.241
SIDE CHAIN
5
A
ARG
96
0.288
SIDE CHAIN
5
A
ARG
97
0.171
SIDE CHAIN
5
B
ARG
96
0.296
SIDE CHAIN
5
B
ARG
97
0.232
SIDE CHAIN
6
A
ARG
96
0.316
SIDE CHAIN
6
A
ARG
97
0.201
SIDE CHAIN
6
B
ARG
96
0.265
SIDE CHAIN
6
B
ARG
97
0.255
SIDE CHAIN
7
A
ARG
96
0.268
SIDE CHAIN
7
A
ARG
97
0.245
SIDE CHAIN
7
B
ARG
96
0.285
SIDE CHAIN
7
B
ARG
97
0.280
SIDE CHAIN
8
A
ARG
96
0.239
SIDE CHAIN
8
A
ARG
97
0.317
SIDE CHAIN
8
B
ARG
96
0.306
SIDE CHAIN
8
B
ARG
97
0.298
SIDE CHAIN
9
A
ARG
96
0.170
SIDE CHAIN
9
A
ARG
97
0.280
SIDE CHAIN
9
B
ARG
96
0.301
SIDE CHAIN
9
B
ARG
97
0.193
SIDE CHAIN
10
A
ARG
96
0.232
SIDE CHAIN
10
A
ARG
97
0.251
SIDE CHAIN
10
B
ARG
96
0.316
SIDE CHAIN
10
B
ARG
97
0.281
SIDE CHAIN
11
A
ARG
96
0.194
SIDE CHAIN
11
A
ARG
97
0.272
SIDE CHAIN
11
B
ARG
96
0.237
SIDE CHAIN
11
B
ARG
97
0.233
SIDE CHAIN
12
A
ARG
96
0.297
SIDE CHAIN
12
A
ARG
97
0.273
SIDE CHAIN
12
B
ARG
96
0.311
SIDE CHAIN
12
B
ARG
97
0.317
SIDE CHAIN
13
A
ARG
96
0.276
SIDE CHAIN
13
A
ARG
97
0.307
SIDE CHAIN
13
B
ARG
96
0.267
SIDE CHAIN
13
B
ARG
97
0.313
SIDE CHAIN
14
A
ARG
96
0.145
SIDE CHAIN
14
A
ARG
97
0.315
SIDE CHAIN
14
B
ARG
96
0.234
SIDE CHAIN
14
B
ARG
97
0.305
SIDE CHAIN
15
A
ARG
96
0.289
SIDE CHAIN
15
A
ARG
97
0.227
SIDE CHAIN
15
B
ARG
96
0.204
SIDE CHAIN
16
A
ARG
96
0.228
SIDE CHAIN
16
A
ARG
97
0.272
SIDE CHAIN
16
B
ARG
96
0.316
SIDE CHAIN
16
B
ARG
97
0.258
SIDE CHAIN
17
A
ARG
96
0.295
SIDE CHAIN
17
A
ARG
97
0.250
SIDE CHAIN
17
B
ARG
96
0.317
SIDE CHAIN
17
B
ARG
97
0.312
SIDE CHAIN
18
A
ARG
96
0.308
SIDE CHAIN
18
A
ARG
97
0.257
SIDE CHAIN
18
B
ARG
96
0.081
SIDE CHAIN
18
B
ARG
97
0.260
SIDE CHAIN
19
A
ARG
96
0.215
SIDE CHAIN
19
A
ARG
97
0.250
SIDE CHAIN
19
B
ARG
96
0.308
SIDE CHAIN
19
B
ARG
97
0.297
SIDE CHAIN
20
A
ARG
96
0.291
SIDE CHAIN
20
A
ARG
97
0.295
SIDE CHAIN
20
B
ARG
96
0.314
SIDE CHAIN
20
B
ARG
97
0.307
SIDE CHAIN
1
A
LEU
64
46.11
-165.82
1
A
ALA
65
-163.00
31.32
1
A
HIS
67
170.12
-53.27
1
A
SER
69
51.29
174.92
1
A
ILE
99
-82.55
-112.97
1
A
LYS
100
47.63
-174.81
1
B
HIS
66
77.93
114.11
1
B
HIS
67
168.20
38.02
1
B
PHE
68
-141.98
-88.24
1
B
GLU
72
-66.30
-73.71
1
B
ILE
99
94.28
102.18
2
A
GLN
63
179.89
143.07
2
A
ALA
65
64.15
60.50
2
A
HIS
67
-152.35
74.19
2
A
PHE
68
-58.74
84.37
2
A
SER
69
-104.06
-152.28
2
A
GLU
70
168.68
-55.38
2
A
PRO
71
-58.12
83.54
2
A
GLU
72
-67.51
-72.18
2
B
LEU
64
67.71
159.23
2
B
ALA
65
-165.87
68.97
2
B
SER
69
-150.57
-152.33
2
B
GLU
70
73.34
98.23
2
B
PRO
71
-62.28
58.48
2
B
GLU
72
-65.15
-74.95
2
B
LYS
100
-115.08
-162.83
3
A
LEU
64
-53.98
173.51
3
A
ALA
65
-166.49
104.28
3
A
HIS
66
-70.32
-148.84
3
A
HIS
67
-65.94
-175.60
3
A
SER
69
-46.62
157.82
3
A
GLU
72
-63.21
-74.68
3
B
HIS
67
-163.84
-169.49
3
B
PHE
68
75.94
-56.15
3
B
PRO
71
-59.72
106.43
4
A
ALA
65
-144.24
24.52
4
A
HIS
66
51.41
77.86
4
A
HIS
67
-158.88
-55.30
4
A
PHE
68
68.38
-62.92
4
A
SER
69
76.17
48.12
4
A
GLU
70
55.46
101.54
4
A
GLU
72
-59.29
-70.77
4
B
GLN
63
61.01
167.03
4
B
LEU
64
175.80
-28.80
4
B
HIS
66
-154.74
63.82
4
B
HIS
67
-101.28
69.29
4
B
PHE
68
-67.17
90.23
4
B
SER
69
75.90
109.37
4
B
GLU
72
-48.54
-74.76
4
B
ILE
99
-79.71
-131.52
4
B
LYS
100
59.47
136.47
5
A
HIS
67
67.54
123.75
5
A
GLU
70
161.78
-50.03
5
A
PRO
71
-61.22
75.96
5
B
SER
69
-89.81
36.49
5
B
GLU
72
-57.89
-72.16
6
A
LEU
64
54.47
-87.37
6
A
HIS
66
-56.16
-77.16
6
A
HIS
67
-162.02
-69.04
6
A
SER
69
-172.98
36.99
6
B
SER
69
-144.20
15.12
7
A
HIS
66
70.62
-66.05
7
A
HIS
67
58.12
-172.80
7
A
SER
69
54.67
74.58
7
A
LYS
100
-123.02
-163.78
7
B
LEU
64
-160.98
34.33
7
B
HIS
66
60.92
131.46
7
B
GLU
70
163.18
-52.97
8
A
GLN
63
57.37
159.64
8
A
ALA
65
-114.98
54.16
8
A
HIS
67
-68.29
68.72
8
A
PRO
71
-59.06
76.13
8
B
PHE
68
-116.35
-74.54
8
B
SER
69
64.58
125.30
8
B
PRO
71
-59.35
96.62
9
A
GLN
63
60.44
159.40
9
A
ALA
65
73.77
144.06
9
A
HIS
66
-147.66
-67.65
9
A
HIS
67
-166.88
34.68
9
A
PHE
68
65.90
-67.71
9
A
GLU
70
166.97
93.05
9
A
GLU
72
-64.65
-86.87
9
A
ILE
73
-39.51
-39.30
9
B
HIS
66
51.85
96.42
9
B
HIS
67
-57.73
-72.32
10
A
LEU
64
53.03
-87.57
10
A
ALA
65
164.68
-22.50
10
A
HIS
66
-103.02
-155.28
10
A
HIS
67
71.83
157.01
10
A
SER
69
-172.78
-170.76
10
B
LEU
64
-98.22
37.01
10
B
HIS
66
73.63
-150.63
10
B
HIS
67
-145.27
-149.79
10
B
SER
69
-59.58
-165.27
10
B
PRO
71
-62.64
59.21
11
A
GLN
63
39.31
96.60
11
A
HIS
66
71.04
120.55
11
A
HIS
67
-78.74
-154.22
11
A
PRO
71
-58.91
73.22
11
A
GLU
72
-64.83
-81.32
11
B
LEU
64
-144.78
55.48
11
B
PRO
71
-65.17
55.57
11
B
GLU
72
-72.37
-71.97
11
B
ILE
99
-82.27
-119.78
11
B
LYS
100
43.38
81.62
12
A
LEU
64
80.44
7.16
12
A
ALA
65
-90.59
30.46
12
A
HIS
67
40.56
96.24
12
A
PHE
68
-42.77
164.87
12
A
SER
69
-105.85
-94.08
12
A
GLU
70
169.83
-57.56
12
A
PRO
71
-54.82
-75.20
12
A
GLU
72
34.25
-131.50
12
A
ILE
99
-82.03
-118.79
12
A
LYS
100
61.19
141.12
12
B
ALA
65
-95.22
32.63
12
B
HIS
67
55.29
72.22
12
B
PHE
68
-59.02
-169.29
12
B
SER
69
-168.56
-163.20
12
B
GLU
72
-45.15
-76.77
12
B
ILE
99
-77.06
-125.09
13
A
HIS
67
-170.44
-84.00
13
A
PRO
71
-63.55
57.73
13
B
LEU
64
-49.71
109.35
13
B
PHE
68
-61.73
-171.65
14
A
GLN
63
-165.59
119.07
14
A
PHE
68
-150.10
15.84
14
A
ILE
99
-82.77
-103.27
14
B
SER
69
170.38
86.16
14
B
ILE
99
-76.61
-130.71
14
B
LYS
100
56.30
161.51
15
A
GLN
63
71.13
172.81
15
A
LEU
64
81.34
-4.82
15
A
HIS
66
54.74
170.44
15
A
HIS
67
-149.20
23.23
15
A
PHE
68
51.10
-176.02
15
A
SER
69
58.39
86.11
15
A
PRO
71
-59.09
92.75
15
A
GLU
72
-68.44
-81.23
15
A
ILE
99
-78.22
-81.49
15
B
HIS
66
170.21
142.61
15
B
PHE
68
48.60
-171.04
16
A
LEU
64
-93.09
-76.60
16
A
HIS
67
-123.99
-79.25
16
A
PHE
68
75.45
-175.62
16
A
SER
69
-175.55
-167.00
16
A
GLU
70
58.17
101.06
16
A
ILE
99
-85.63
39.14
16
B
HIS
67
66.82
129.98
16
B
GLU
70
172.48
-57.17
17
A
HIS
66
-163.05
54.97
17
A
PHE
68
-69.62
-162.89
17
A
GLU
70
46.83
70.46
17
A
PRO
71
-60.33
90.83
17
A
GLU
72
-64.72
-92.13
17
B
GLN
63
-170.51
124.62
17
B
HIS
67
-135.08
-57.50
17
B
PRO
71
-61.71
64.71
17
B
GLU
72
-67.62
-73.86
18
A
HIS
66
-114.44
-71.81
18
A
HIS
67
169.11
131.93
18
A
PHE
68
-164.81
38.40
18
A
SER
69
-145.58
-151.78
18
A
GLU
70
173.49
-58.00
18
A
GLU
72
-65.65
-89.70
18
A
ILE
73
-38.91
-38.79
18
B
LEU
64
-64.72
75.19
18
B
HIS
66
-56.70
177.04
18
B
PHE
68
-155.67
59.49
18
B
GLU
70
49.41
95.25
18
B
PRO
71
-60.53
67.51
18
B
GLU
72
-64.67
-72.39
19
A
ALA
65
162.33
-22.99
19
A
SER
69
70.09
-165.44
19
A
PRO
71
-63.95
56.72
19
A
GLU
72
-73.04
-72.72
19
B
GLN
63
-171.75
143.26
19
B
HIS
66
56.28
175.09
19
B
HIS
67
-144.15
-49.30
19
B
PHE
68
39.41
52.22
19
B
SER
69
-118.49
-157.14
19
B
LYS
100
-115.84
79.68
20
A
GLN
63
71.52
98.43
20
A
LEU
64
-118.77
-75.06
20
A
HIS
67
-166.94
-150.76
20
A
PRO
71
-60.01
76.55
20
A
GLU
72
-61.55
-88.30
20
B
GLN
63
177.17
166.24
20
B
HIS
66
-44.32
167.09
20
B
HIS
67
-80.50
-76.23
20
B
PHE
68
-88.05
-158.40
model building
X-PLOR
3.1
refinement
X-PLOR
3.1
phasing
X-PLOR
3.1
DIMERIC TRANSMEMBRANE DOMAIN OF HUMAN GLYCOPHORIN A, NMR, 20 STRUCTURES
1
N
N
1
N
N
A
GLU
72
A
GLU
11
HELX_P
A
LEU
98
A
LEU
37
1
1
27
B
GLU
72
B
GLU
11
HELX_P
B
LEU
98
B
LEU
37
1
2
27
INTEGRAL MEMBRANE PROTEIN
INTEGRAL MEMBRANE PROTEIN, HUMAN GLYCOPHORIN A, TRANSMEMBRANE HELIX INTERACTIONS, MEMBRANE PROTEIN FOLDING
GLPA_HUMAN
UNP
1
1
P02724
MYGKIIFVLLLSAIVSISASSTTGVAMHTSTSSSVTKSYISSQTNDTHKRDTYAATPRAHEVSEISVRTVYPPEEETGER
VQLAHHFSEPEITLIIFGVMAGVIGTILLISYGIRRLIKKSPSDVKPLPSPDTDVPLSSVEIENPETSDQ
81
120
1AFO
62
101
P02724
A
1
1
40
81
120
1AFO
62
101
P02724
B
1
1
40
1
P 1