0.013231
0.007639
0.000000
0.000000
0.015277
0.000000
0.000000
0.000000
0.030574
0.00000
0.00000
0.00000
Xue, Y.
Okvist, M.
Young, S.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
6
90.00
90.00
120.00
75.582
75.582
32.707
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
Cu 2
63.546
COPPER (II) ION
non-polymer
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
US
Protein Sci.
PRCIEI
0795
0961-8368
7
2099
2105
9792096
Crystal structure of spinach plastocyanin at 1.7 A resolution.
1998
10.2210/pdb1ag6/pdb
pdb_00001ag6
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
297
1
COLLIMATOR
IMAGE PLATE
1996-07
RIGAKU RAXIS II
GRAPHITE(002)
M
x-ray
1
1.5418
1.0
1.5418
ROTATING ANODE
RIGAKU RUH2R
10478.593
PLASTOCYANIN
G8D
1
man
polymer
63.546
COPPER (II) ION
1
syn
non-polymer
18.015
water
64
nat
water
no
no
VEVLLGGDDGSLAFLPGDFSVASGEEIVFKNNAGFPHNVVFDEDEIPSGVDAAKISMSEEDLLNAPGETYKVTLTEKGTY
KFYCSPHQGAGMVGKVTVN
VEVLLGGDDGSLAFLPGDFSVASGEEIVFKNNAGFPHNVVFDEDEIPSGVDAAKISMSEEDLLNAPGETYKVTLTEKGTY
KFYCSPHQGAGMVGKVTVN
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
spinach
Spinacia
Escherichia
Escherichia coli
sample
BL21
THYLAKOID
3562
Spinacia oleracea
469008
Escherichia coli BL21(DE3)
BL21 (DE3)
BL21
1
2.57
52.19
4.4
pH 4.4
database_2
struct_conn
struct_ref_seq_dif
struct_site
pdbx_initial_refinement_model
repository
Initial release
Version format compliance
Version format compliance
Database references
Derived calculations
Refinement description
1
0
1998-10-21
1
1
2008-03-24
1
2
2011-07-13
1
3
2021-11-03
1
4
2023-08-02
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_ref_seq_dif.details
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
Y
BNL
1997-04-02
REL
CU
COPPER (II) ION
HOH
water
1PLC
PDB ENTRY 1PLC
PDB
experimental model
CU
200
2
CU
CU
200
A
HOH
201
3
HOH
HOH
201
A
HOH
202
3
HOH
HOH
202
A
HOH
203
3
HOH
HOH
203
A
HOH
204
3
HOH
HOH
204
A
HOH
205
3
HOH
HOH
205
A
HOH
206
3
HOH
HOH
206
A
HOH
207
3
HOH
HOH
207
A
HOH
208
3
HOH
HOH
208
A
HOH
209
3
HOH
HOH
209
A
HOH
210
3
HOH
HOH
210
A
HOH
211
3
HOH
HOH
211
A
HOH
212
3
HOH
HOH
212
A
HOH
213
3
HOH
HOH
213
A
HOH
214
3
HOH
HOH
214
A
HOH
215
3
HOH
HOH
215
A
HOH
216
3
HOH
HOH
216
A
HOH
217
3
HOH
HOH
217
A
HOH
218
3
HOH
HOH
218
A
HOH
219
3
HOH
HOH
219
A
HOH
220
3
HOH
HOH
220
A
HOH
221
3
HOH
HOH
221
A
HOH
222
3
HOH
HOH
222
A
HOH
223
3
HOH
HOH
223
A
HOH
225
3
HOH
HOH
225
A
HOH
226
3
HOH
HOH
226
A
HOH
227
3
HOH
HOH
227
A
HOH
228
3
HOH
HOH
228
A
HOH
229
3
HOH
HOH
229
A
HOH
230
3
HOH
HOH
230
A
HOH
231
3
HOH
HOH
231
A
HOH
232
3
HOH
HOH
232
A
HOH
233
3
HOH
HOH
233
A
HOH
234
3
HOH
HOH
234
A
HOH
235
3
HOH
HOH
235
A
HOH
236
3
HOH
HOH
236
A
HOH
237
3
HOH
HOH
237
A
HOH
238
3
HOH
HOH
238
A
HOH
239
3
HOH
HOH
239
A
HOH
240
3
HOH
HOH
240
A
HOH
241
3
HOH
HOH
241
A
HOH
242
3
HOH
HOH
242
A
HOH
243
3
HOH
HOH
243
A
HOH
244
3
HOH
HOH
244
A
HOH
245
3
HOH
HOH
245
A
HOH
246
3
HOH
HOH
246
A
HOH
247
3
HOH
HOH
247
A
HOH
248
3
HOH
HOH
248
A
HOH
249
3
HOH
HOH
249
A
HOH
250
3
HOH
HOH
250
A
HOH
251
3
HOH
HOH
251
A
HOH
252
3
HOH
HOH
252
A
HOH
253
3
HOH
HOH
253
A
HOH
254
3
HOH
HOH
254
A
HOH
255
3
HOH
HOH
255
A
HOH
256
3
HOH
HOH
256
A
HOH
257
3
HOH
HOH
257
A
HOH
258
3
HOH
HOH
258
A
HOH
259
3
HOH
HOH
259
A
HOH
260
3
HOH
HOH
260
A
HOH
261
3
HOH
HOH
261
A
HOH
262
3
HOH
HOH
262
A
HOH
263
3
HOH
HOH
263
A
HOH
264
3
HOH
HOH
264
A
HOH
265
3
HOH
HOH
265
A
VAL
1
n
1
VAL
1
A
GLU
2
n
2
GLU
2
A
VAL
3
n
3
VAL
3
A
LEU
4
n
4
LEU
4
A
LEU
5
n
5
LEU
5
A
GLY
6
n
6
GLY
6
A
GLY
7
n
7
GLY
7
A
ASP
8
n
8
ASP
8
A
ASP
9
n
9
ASP
9
A
GLY
10
n
10
GLY
10
A
SER
11
n
11
SER
11
A
LEU
12
n
12
LEU
12
A
ALA
13
n
13
ALA
13
A
PHE
14
n
14
PHE
14
A
LEU
15
n
15
LEU
15
A
PRO
16
n
16
PRO
16
A
GLY
17
n
17
GLY
17
A
ASP
18
n
18
ASP
18
A
PHE
19
n
19
PHE
19
A
SER
20
n
20
SER
20
A
VAL
21
n
21
VAL
21
A
ALA
22
n
22
ALA
22
A
SER
23
n
23
SER
23
A
GLY
24
n
24
GLY
24
A
GLU
25
n
25
GLU
25
A
GLU
26
n
26
GLU
26
A
ILE
27
n
27
ILE
27
A
VAL
28
n
28
VAL
28
A
PHE
29
n
29
PHE
29
A
LYS
30
n
30
LYS
30
A
ASN
31
n
31
ASN
31
A
ASN
32
n
32
ASN
32
A
ALA
33
n
33
ALA
33
A
GLY
34
n
34
GLY
34
A
PHE
35
n
35
PHE
35
A
PRO
36
n
36
PRO
36
A
HIS
37
n
37
HIS
37
A
ASN
38
n
38
ASN
38
A
VAL
39
n
39
VAL
39
A
VAL
40
n
40
VAL
40
A
PHE
41
n
41
PHE
41
A
ASP
42
n
42
ASP
42
A
GLU
43
n
43
GLU
43
A
ASP
44
n
44
ASP
44
A
GLU
45
n
45
GLU
45
A
ILE
46
n
46
ILE
46
A
PRO
47
n
47
PRO
47
A
SER
48
n
48
SER
48
A
GLY
49
n
49
GLY
49
A
VAL
50
n
50
VAL
50
A
ASP
51
n
51
ASP
51
A
ALA
52
n
52
ALA
52
A
ALA
53
n
53
ALA
53
A
LYS
54
n
54
LYS
54
A
ILE
55
n
55
ILE
55
A
SER
56
n
56
SER
56
A
MET
57
n
57
MET
57
A
SER
58
n
58
SER
58
A
GLU
59
n
59
GLU
59
A
GLU
60
n
60
GLU
60
A
ASP
61
n
61
ASP
61
A
LEU
62
n
62
LEU
62
A
LEU
63
n
63
LEU
63
A
ASN
64
n
64
ASN
64
A
ALA
65
n
65
ALA
65
A
PRO
66
n
66
PRO
66
A
GLY
67
n
67
GLY
67
A
GLU
68
n
68
GLU
68
A
THR
69
n
69
THR
69
A
TYR
70
n
70
TYR
70
A
LYS
71
n
71
LYS
71
A
VAL
72
n
72
VAL
72
A
THR
73
n
73
THR
73
A
LEU
74
n
74
LEU
74
A
THR
75
n
75
THR
75
A
GLU
76
n
76
GLU
76
A
LYS
77
n
77
LYS
77
A
GLY
78
n
78
GLY
78
A
THR
79
n
79
THR
79
A
TYR
80
n
80
TYR
80
A
LYS
81
n
81
LYS
81
A
PHE
82
n
82
PHE
82
A
TYR
83
n
83
TYR
83
A
CYS
84
n
84
CYS
84
A
SER
85
n
85
SER
85
A
PRO
86
n
86
PRO
86
A
HIS
87
n
87
HIS
87
A
GLN
88
n
88
GLN
88
A
GLY
89
n
89
GLY
89
A
ALA
90
n
90
ALA
90
A
GLY
91
n
91
GLY
91
A
MET
92
n
92
MET
92
A
VAL
93
n
93
VAL
93
A
GLY
94
n
94
GLY
94
A
LYS
95
n
95
LYS
95
A
VAL
96
n
96
VAL
96
A
THR
97
n
97
THR
97
A
VAL
98
n
98
VAL
98
A
ASN
99
n
99
ASN
99
A
author_defined_assembly
1
monomeric
A
HIS
37
A
ND1
HIS
37
1_555
A
CU
200
B
CU
CU
1_555
A
CYS
84
A
SG
CYS
84
1_555
129.9
A
HIS
37
A
ND1
HIS
37
1_555
A
CU
200
B
CU
CU
1_555
A
HIS
87
A
ND1
HIS
87
1_555
103.0
A
CYS
84
A
SG
CYS
84
1_555
A
CU
200
B
CU
CU
1_555
A
HIS
87
A
ND1
HIS
87
1_555
120.1
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
O
VAL
3
A
O
VAL
3
A
N
VAL
28
A
N
VAL
28
A
O
ILE
27
A
O
ILE
27
A
N
VAL
72
A
N
VAL
72
A
O
PHE
19
A
O
PHE
19
A
N
LYS
95
A
N
LYS
95
A
O
GLY
94
A
O
GLY
94
A
N
PHE
82
A
N
PHE
82
1
A
HOH
265
C
HOH
1
7.97
1.20
123.30
131.27
A
A
A
OE1
CD
OE2
GLU
GLU
GLU
26
26
26
N
1
A
ASN
32
-119.95
-70.01
23.5
X-PLOR (BRUNGER) ALSO WAS USED.
0.2240000
0.1910000
1.6
30
12972
10
1
THROUGHOUT
MOLECULAR REPLACEMENT
PDB ENTRY 1PLC
0.23
5
0.24
1.6
30
77
815
1
0
737
0.026
0.020
0.044
0.040
0.048
0.050
1.869
2.000
2.657
3.000
2.364
2.000
3.629
3.000
23.2
1.7
30.0
1AG6
12009
-3
0.0590000
1
9.5
9.4
99.8
0.6300000
1.70
1.76
2.2
4
98.0
phasing
AMoRE
refinement
REFMAC
data reduction
DENZO
data scaling
SCALEPACK
PLASTOCYANIN FROM SPINACH
1
N
N
2
N
N
3
N
N
A
GLU
43
A
GLU
43
HELX_P
A
GLU
45
A
GLU
45
5
1
3
A
ALA
52
A
ALA
52
HELX_P
A
ILE
55
A
ILE
55
1
2
4
A
SER
85
A
SER
85
HELX_P
A
HIS
87
A
HIS
87
5
3
3
metalc
1.963
A
HIS
37
A
ND1
HIS
37
1_555
A
CU
200
B
CU
CU
1_555
metalc
2.149
A
CYS
84
A
SG
CYS
84
1_555
A
CU
200
B
CU
CU
1_555
metalc
2.010
A
HIS
87
A
ND1
HIS
87
1_555
A
CU
200
B
CU
CU
1_555
ELECTRON TRANSPORT
BLUE-COPPER PROTEIN, ELECTRON TRANSFER, ELECTRON TRANSPORT
A
LEU
15
A
LEU
15
1
A
PRO
16
A
PRO
16
-0.57
A
PHE
35
A
PHE
35
1
A
PRO
36
A
PRO
36
4.57
PLAS_SPIOL
UNP
1
1
P00289
MATVASSAAVAVPSFTGLKASGSIKPTTAKIIPTTTAVPRLSVKASLKNVGAAVVATAAAGLLAGNAMAVEVLLGGGDGS
LAFLPGDFSVASGEEIVFKNNAGFPHNVVFDEDEIPSGVDAAKISMSEEDLLNAPGETYKVTLTEKGTYKFYCSPHQGAG
MVGKVTVN
70
168
1AG6
1
99
P00289
A
1
1
99
1
GLY
engineered mutation
ASP
8
1AG6
A
P00289
UNP
77
8
3
3
parallel
anti-parallel
parallel
anti-parallel
A
GLU
2
A
GLU
2
A
LEU
5
A
LEU
5
A
GLU
26
A
GLU
26
A
ASN
31
A
ASN
31
A
THR
69
A
THR
69
A
THR
73
A
THR
73
A
ASP
18
A
ASP
18
A
VAL
21
A
VAL
21
A
VAL
93
A
VAL
93
A
VAL
98
A
VAL
98
A
GLY
78
A
GLY
78
A
TYR
83
A
TYR
83
BINDING SITE FOR RESIDUE CU A 200
A
CU
200
Software
5
A
PRO
36
A
PRO
36
5
1_555
A
HIS
37
A
HIS
37
5
1_555
A
CYS
84
A
CYS
84
5
1_555
A
HIS
87
A
HIS
87
5
1_555
A
MET
92
A
MET
92
5
1_555
152
P 31 2 1