0.013231 0.007639 0.000000 0.000000 0.015277 0.000000 0.000000 0.000000 0.030574 0.00000 0.00000 0.00000 Xue, Y. Okvist, M. Young, S. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 6 90.00 90.00 120.00 75.582 75.582 32.707 C3 H7 N O2 89.093 y ALANINE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking Cu 2 63.546 COPPER (II) ION non-polymer C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking US Protein Sci. PRCIEI 0795 0961-8368 7 2099 2105 9792096 Crystal structure of spinach plastocyanin at 1.7 A resolution. 1998 10.2210/pdb1ag6/pdb pdb_00001ag6 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 297 1 COLLIMATOR IMAGE PLATE 1996-07 RIGAKU RAXIS II GRAPHITE(002) M x-ray 1 1.5418 1.0 1.5418 ROTATING ANODE RIGAKU RUH2R 10478.593 PLASTOCYANIN G8D 1 man polymer 63.546 COPPER (II) ION 1 syn non-polymer 18.015 water 64 nat water no no VEVLLGGDDGSLAFLPGDFSVASGEEIVFKNNAGFPHNVVFDEDEIPSGVDAAKISMSEEDLLNAPGETYKVTLTEKGTY KFYCSPHQGAGMVGKVTVN VEVLLGGDDGSLAFLPGDFSVASGEEIVFKNNAGFPHNVVFDEDEIPSGVDAAKISMSEEDLLNAPGETYKVTLTEKGTY KFYCSPHQGAGMVGKVTVN A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n spinach Spinacia Escherichia Escherichia coli sample BL21 THYLAKOID 3562 Spinacia oleracea 469008 Escherichia coli BL21(DE3) BL21 (DE3) BL21 1 2.57 52.19 4.4 pH 4.4 database_2 struct_conn struct_ref_seq_dif struct_site pdbx_initial_refinement_model repository Initial release Version format compliance Version format compliance Database references Derived calculations Refinement description 1 0 1998-10-21 1 1 2008-03-24 1 2 2011-07-13 1 3 2021-11-03 1 4 2023-08-02 _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_ref_seq_dif.details _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id Y BNL 1997-04-02 REL CU COPPER (II) ION HOH water 1PLC PDB ENTRY 1PLC PDB experimental model CU 200 2 CU CU 200 A HOH 201 3 HOH HOH 201 A HOH 202 3 HOH HOH 202 A HOH 203 3 HOH HOH 203 A HOH 204 3 HOH HOH 204 A HOH 205 3 HOH HOH 205 A HOH 206 3 HOH HOH 206 A HOH 207 3 HOH HOH 207 A HOH 208 3 HOH HOH 208 A HOH 209 3 HOH HOH 209 A HOH 210 3 HOH HOH 210 A HOH 211 3 HOH HOH 211 A HOH 212 3 HOH HOH 212 A HOH 213 3 HOH HOH 213 A HOH 214 3 HOH HOH 214 A HOH 215 3 HOH HOH 215 A HOH 216 3 HOH HOH 216 A HOH 217 3 HOH HOH 217 A HOH 218 3 HOH HOH 218 A HOH 219 3 HOH HOH 219 A HOH 220 3 HOH HOH 220 A HOH 221 3 HOH HOH 221 A HOH 222 3 HOH HOH 222 A HOH 223 3 HOH HOH 223 A HOH 225 3 HOH HOH 225 A HOH 226 3 HOH HOH 226 A HOH 227 3 HOH HOH 227 A HOH 228 3 HOH HOH 228 A HOH 229 3 HOH HOH 229 A HOH 230 3 HOH HOH 230 A HOH 231 3 HOH HOH 231 A HOH 232 3 HOH HOH 232 A HOH 233 3 HOH HOH 233 A HOH 234 3 HOH HOH 234 A HOH 235 3 HOH HOH 235 A HOH 236 3 HOH HOH 236 A HOH 237 3 HOH HOH 237 A HOH 238 3 HOH HOH 238 A HOH 239 3 HOH HOH 239 A HOH 240 3 HOH HOH 240 A HOH 241 3 HOH HOH 241 A HOH 242 3 HOH HOH 242 A HOH 243 3 HOH HOH 243 A HOH 244 3 HOH HOH 244 A HOH 245 3 HOH HOH 245 A HOH 246 3 HOH HOH 246 A HOH 247 3 HOH HOH 247 A HOH 248 3 HOH HOH 248 A HOH 249 3 HOH HOH 249 A HOH 250 3 HOH HOH 250 A HOH 251 3 HOH HOH 251 A HOH 252 3 HOH HOH 252 A HOH 253 3 HOH HOH 253 A HOH 254 3 HOH HOH 254 A HOH 255 3 HOH HOH 255 A HOH 256 3 HOH HOH 256 A HOH 257 3 HOH HOH 257 A HOH 258 3 HOH HOH 258 A HOH 259 3 HOH HOH 259 A HOH 260 3 HOH HOH 260 A HOH 261 3 HOH HOH 261 A HOH 262 3 HOH HOH 262 A HOH 263 3 HOH HOH 263 A HOH 264 3 HOH HOH 264 A HOH 265 3 HOH HOH 265 A VAL 1 n 1 VAL 1 A GLU 2 n 2 GLU 2 A VAL 3 n 3 VAL 3 A LEU 4 n 4 LEU 4 A LEU 5 n 5 LEU 5 A GLY 6 n 6 GLY 6 A GLY 7 n 7 GLY 7 A ASP 8 n 8 ASP 8 A ASP 9 n 9 ASP 9 A GLY 10 n 10 GLY 10 A SER 11 n 11 SER 11 A LEU 12 n 12 LEU 12 A ALA 13 n 13 ALA 13 A PHE 14 n 14 PHE 14 A LEU 15 n 15 LEU 15 A PRO 16 n 16 PRO 16 A GLY 17 n 17 GLY 17 A ASP 18 n 18 ASP 18 A PHE 19 n 19 PHE 19 A SER 20 n 20 SER 20 A VAL 21 n 21 VAL 21 A ALA 22 n 22 ALA 22 A SER 23 n 23 SER 23 A GLY 24 n 24 GLY 24 A GLU 25 n 25 GLU 25 A GLU 26 n 26 GLU 26 A ILE 27 n 27 ILE 27 A VAL 28 n 28 VAL 28 A PHE 29 n 29 PHE 29 A LYS 30 n 30 LYS 30 A ASN 31 n 31 ASN 31 A ASN 32 n 32 ASN 32 A ALA 33 n 33 ALA 33 A GLY 34 n 34 GLY 34 A PHE 35 n 35 PHE 35 A PRO 36 n 36 PRO 36 A HIS 37 n 37 HIS 37 A ASN 38 n 38 ASN 38 A VAL 39 n 39 VAL 39 A VAL 40 n 40 VAL 40 A PHE 41 n 41 PHE 41 A ASP 42 n 42 ASP 42 A GLU 43 n 43 GLU 43 A ASP 44 n 44 ASP 44 A GLU 45 n 45 GLU 45 A ILE 46 n 46 ILE 46 A PRO 47 n 47 PRO 47 A SER 48 n 48 SER 48 A GLY 49 n 49 GLY 49 A VAL 50 n 50 VAL 50 A ASP 51 n 51 ASP 51 A ALA 52 n 52 ALA 52 A ALA 53 n 53 ALA 53 A LYS 54 n 54 LYS 54 A ILE 55 n 55 ILE 55 A SER 56 n 56 SER 56 A MET 57 n 57 MET 57 A SER 58 n 58 SER 58 A GLU 59 n 59 GLU 59 A GLU 60 n 60 GLU 60 A ASP 61 n 61 ASP 61 A LEU 62 n 62 LEU 62 A LEU 63 n 63 LEU 63 A ASN 64 n 64 ASN 64 A ALA 65 n 65 ALA 65 A PRO 66 n 66 PRO 66 A GLY 67 n 67 GLY 67 A GLU 68 n 68 GLU 68 A THR 69 n 69 THR 69 A TYR 70 n 70 TYR 70 A LYS 71 n 71 LYS 71 A VAL 72 n 72 VAL 72 A THR 73 n 73 THR 73 A LEU 74 n 74 LEU 74 A THR 75 n 75 THR 75 A GLU 76 n 76 GLU 76 A LYS 77 n 77 LYS 77 A GLY 78 n 78 GLY 78 A THR 79 n 79 THR 79 A TYR 80 n 80 TYR 80 A LYS 81 n 81 LYS 81 A PHE 82 n 82 PHE 82 A TYR 83 n 83 TYR 83 A CYS 84 n 84 CYS 84 A SER 85 n 85 SER 85 A PRO 86 n 86 PRO 86 A HIS 87 n 87 HIS 87 A GLN 88 n 88 GLN 88 A GLY 89 n 89 GLY 89 A ALA 90 n 90 ALA 90 A GLY 91 n 91 GLY 91 A MET 92 n 92 MET 92 A VAL 93 n 93 VAL 93 A GLY 94 n 94 GLY 94 A LYS 95 n 95 LYS 95 A VAL 96 n 96 VAL 96 A THR 97 n 97 THR 97 A VAL 98 n 98 VAL 98 A ASN 99 n 99 ASN 99 A author_defined_assembly 1 monomeric A HIS 37 A ND1 HIS 37 1_555 A CU 200 B CU CU 1_555 A CYS 84 A SG CYS 84 1_555 129.9 A HIS 37 A ND1 HIS 37 1_555 A CU 200 B CU CU 1_555 A HIS 87 A ND1 HIS 87 1_555 103.0 A CYS 84 A SG CYS 84 1_555 A CU 200 B CU CU 1_555 A HIS 87 A ND1 HIS 87 1_555 120.1 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A O VAL 3 A O VAL 3 A N VAL 28 A N VAL 28 A O ILE 27 A O ILE 27 A N VAL 72 A N VAL 72 A O PHE 19 A O PHE 19 A N LYS 95 A N LYS 95 A O GLY 94 A O GLY 94 A N PHE 82 A N PHE 82 1 A HOH 265 C HOH 1 7.97 1.20 123.30 131.27 A A A OE1 CD OE2 GLU GLU GLU 26 26 26 N 1 A ASN 32 -119.95 -70.01 23.5 X-PLOR (BRUNGER) ALSO WAS USED. 0.2240000 0.1910000 1.6 30 12972 10 1 THROUGHOUT MOLECULAR REPLACEMENT PDB ENTRY 1PLC 0.23 5 0.24 1.6 30 77 815 1 0 737 0.026 0.020 0.044 0.040 0.048 0.050 1.869 2.000 2.657 3.000 2.364 2.000 3.629 3.000 23.2 1.7 30.0 1AG6 12009 -3 0.0590000 1 9.5 9.4 99.8 0.6300000 1.70 1.76 2.2 4 98.0 phasing AMoRE refinement REFMAC data reduction DENZO data scaling SCALEPACK PLASTOCYANIN FROM SPINACH 1 N N 2 N N 3 N N A GLU 43 A GLU 43 HELX_P A GLU 45 A GLU 45 5 1 3 A ALA 52 A ALA 52 HELX_P A ILE 55 A ILE 55 1 2 4 A SER 85 A SER 85 HELX_P A HIS 87 A HIS 87 5 3 3 metalc 1.963 A HIS 37 A ND1 HIS 37 1_555 A CU 200 B CU CU 1_555 metalc 2.149 A CYS 84 A SG CYS 84 1_555 A CU 200 B CU CU 1_555 metalc 2.010 A HIS 87 A ND1 HIS 87 1_555 A CU 200 B CU CU 1_555 ELECTRON TRANSPORT BLUE-COPPER PROTEIN, ELECTRON TRANSFER, ELECTRON TRANSPORT A LEU 15 A LEU 15 1 A PRO 16 A PRO 16 -0.57 A PHE 35 A PHE 35 1 A PRO 36 A PRO 36 4.57 PLAS_SPIOL UNP 1 1 P00289 MATVASSAAVAVPSFTGLKASGSIKPTTAKIIPTTTAVPRLSVKASLKNVGAAVVATAAAGLLAGNAMAVEVLLGGGDGS LAFLPGDFSVASGEEIVFKNNAGFPHNVVFDEDEIPSGVDAAKISMSEEDLLNAPGETYKVTLTEKGTYKFYCSPHQGAG MVGKVTVN 70 168 1AG6 1 99 P00289 A 1 1 99 1 GLY engineered mutation ASP 8 1AG6 A P00289 UNP 77 8 3 3 parallel anti-parallel parallel anti-parallel A GLU 2 A GLU 2 A LEU 5 A LEU 5 A GLU 26 A GLU 26 A ASN 31 A ASN 31 A THR 69 A THR 69 A THR 73 A THR 73 A ASP 18 A ASP 18 A VAL 21 A VAL 21 A VAL 93 A VAL 93 A VAL 98 A VAL 98 A GLY 78 A GLY 78 A TYR 83 A TYR 83 BINDING SITE FOR RESIDUE CU A 200 A CU 200 Software 5 A PRO 36 A PRO 36 5 1_555 A HIS 37 A HIS 37 5 1_555 A CYS 84 A CYS 84 5 1_555 A HIS 87 A HIS 87 5 1_555 A MET 92 A MET 92 5 1_555 152 P 31 2 1