data_1AGA
#
_entry.id 1AGA
#
_audit_conform.dict_name mmcif_pdbx.dic
_audit_conform.dict_version 5.385
_audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
#
loop_
_database_2.database_id
_database_2.database_code
_database_2.pdbx_database_accession
_database_2.pdbx_DOI
PDB 1AGA pdb_00001aga 10.2210/pdb1aga/pdb
WWPDB D_1000170779 ? ?
#
loop_
_pdbx_audit_revision_history.ordinal
_pdbx_audit_revision_history.data_content_type
_pdbx_audit_revision_history.major_revision
_pdbx_audit_revision_history.minor_revision
_pdbx_audit_revision_history.revision_date
1 'Structure model' 1 0 1980-03-28
2 'Structure model' 1 1 2008-03-21
3 'Structure model' 1 2 2011-07-13
4 'Structure model' 2 0 2020-07-29
5 'Structure model' 2 1 2024-02-07
#
loop_
_pdbx_audit_revision_details.ordinal
_pdbx_audit_revision_details.revision_ordinal
_pdbx_audit_revision_details.data_content_type
_pdbx_audit_revision_details.provider
_pdbx_audit_revision_details.type
_pdbx_audit_revision_details.description
_pdbx_audit_revision_details.details
1 1 'Structure model' repository 'Initial release' ? ?
2 4 'Structure model' repository Remediation 'Carbohydrate remediation' ?
#
loop_
_pdbx_audit_revision_group.ordinal
_pdbx_audit_revision_group.revision_ordinal
_pdbx_audit_revision_group.data_content_type
_pdbx_audit_revision_group.group
1 2 'Structure model' 'Version format compliance'
2 3 'Structure model' 'Version format compliance'
3 4 'Structure model' Advisory
4 4 'Structure model' 'Atomic model'
5 4 'Structure model' 'Data collection'
6 4 'Structure model' 'Database references'
7 4 'Structure model' 'Derived calculations'
8 4 'Structure model' Other
9 4 'Structure model' 'Structure summary'
10 5 'Structure model' 'Data collection'
11 5 'Structure model' 'Database references'
12 5 'Structure model' 'Structure summary'
#
loop_
_pdbx_audit_revision_category.ordinal
_pdbx_audit_revision_category.revision_ordinal
_pdbx_audit_revision_category.data_content_type
_pdbx_audit_revision_category.category
1 4 'Structure model' atom_site
2 4 'Structure model' chem_comp
3 4 'Structure model' entity
4 4 'Structure model' pdbx_branch_scheme
5 4 'Structure model' pdbx_chem_comp_identifier
6 4 'Structure model' pdbx_database_status
7 4 'Structure model' pdbx_entity_branch
8 4 'Structure model' pdbx_entity_branch_descriptor
9 4 'Structure model' pdbx_entity_branch_link
10 4 'Structure model' pdbx_entity_branch_list
11 4 'Structure model' pdbx_entity_nonpoly
12 4 'Structure model' pdbx_nonpoly_scheme
13 4 'Structure model' pdbx_struct_assembly
14 4 'Structure model' pdbx_struct_oper_list
15 4 'Structure model' pdbx_unobs_or_zero_occ_atoms
16 4 'Structure model' struct_asym
17 4 'Structure model' struct_conn
18 4 'Structure model' struct_ref
19 4 'Structure model' struct_ref_seq
20 5 'Structure model' chem_comp
21 5 'Structure model' chem_comp_atom
22 5 'Structure model' chem_comp_bond
23 5 'Structure model' database_2
#
loop_
_pdbx_audit_revision_item.ordinal
_pdbx_audit_revision_item.revision_ordinal
_pdbx_audit_revision_item.data_content_type
_pdbx_audit_revision_item.item
1 4 'Structure model' '_atom_site.Cartn_x'
2 4 'Structure model' '_atom_site.Cartn_y'
3 4 'Structure model' '_atom_site.Cartn_z'
4 4 'Structure model' '_atom_site.auth_atom_id'
5 4 'Structure model' '_atom_site.auth_comp_id'
6 4 'Structure model' '_atom_site.auth_seq_id'
7 4 'Structure model' '_atom_site.label_asym_id'
8 4 'Structure model' '_atom_site.label_atom_id'
9 4 'Structure model' '_atom_site.label_comp_id'
10 4 'Structure model' '_atom_site.label_entity_id'
11 4 'Structure model' '_atom_site.type_symbol'
12 4 'Structure model' '_chem_comp.name'
13 4 'Structure model' '_chem_comp.type'
14 4 'Structure model' '_pdbx_database_status.process_site'
15 4 'Structure model' '_pdbx_unobs_or_zero_occ_atoms.auth_seq_id'
16 4 'Structure model' '_pdbx_unobs_or_zero_occ_atoms.label_seq_id'
17 4 'Structure model' '_struct_conn.pdbx_dist_value'
18 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag'
19 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id'
20 4 'Structure model' '_struct_conn.ptnr1_label_asym_id'
21 4 'Structure model' '_struct_conn.ptnr1_label_atom_id'
22 4 'Structure model' '_struct_conn.ptnr1_label_comp_id'
23 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id'
24 4 'Structure model' '_struct_conn.ptnr2_label_asym_id'
25 4 'Structure model' '_struct_conn.ptnr2_label_atom_id'
26 4 'Structure model' '_struct_conn.ptnr2_label_comp_id'
27 5 'Structure model' '_chem_comp.pdbx_synonyms'
28 5 'Structure model' '_database_2.pdbx_DOI'
29 5 'Structure model' '_database_2.pdbx_database_accession'
#
_pdbx_database_status.status_code REL
_pdbx_database_status.entry_id 1AGA
_pdbx_database_status.recvd_initial_deposition_date 1978-05-23
_pdbx_database_status.deposit_site ?
_pdbx_database_status.process_site BNL
_pdbx_database_status.SG_entry .
_pdbx_database_status.pdb_format_compatible Y
_pdbx_database_status.status_code_mr ?
_pdbx_database_status.status_code_sf ?
_pdbx_database_status.status_code_cs ?
_pdbx_database_status.status_code_nmr_data ?
_pdbx_database_status.methods_development_category ?
#
_audit_author.name 'Arnott, S.'
_audit_author.pdbx_ordinal 1
#
loop_
_citation.id
_citation.title
_citation.journal_abbrev
_citation.journal_volume
_citation.page_first
_citation.page_last
_citation.year
_citation.journal_id_ASTM
_citation.country
_citation.journal_id_ISSN
_citation.journal_id_CSD
_citation.book_publisher
_citation.pdbx_database_id_PubMed
_citation.pdbx_database_id_DOI
primary 'The agarose double helix and its function in agarose gel structure.' J.Mol.Biol. 90 269 284 1974 JMOBAK
UK 0022-2836 0070 ? 4453017 '10.1016/0022-2836(74)90372-6'
1
'Accurate X-Ray Diffraction Analysis of Fibrous Polysaccharides Containing Pyranose Rings. Part 1. The Linked-Atom Approach.'
'J.Chem.Soc.,Perkin Trans.2' ? 324 ? 1972 JCPKBH UK 0300-9580 0188 ? ? ?
#
loop_
_citation_author.citation_id
_citation_author.name
_citation_author.ordinal
_citation_author.identifier_ORCID
primary 'Arnott, S.' 1 ?
primary 'Fulmer, A.' 2 ?
primary 'Scott, W.E.' 3 ?
primary 'Dea, I.C.' 4 ?
primary 'Moorhouse, R.' 5 ?
primary 'Rees, D.A.' 6 ?
1 'Arnott, S.' 7 ?
1 'Scott, W.E.' 8 ?
#
_entity.id 1
_entity.type branched
_entity.src_method man
_entity.pdbx_description
;beta-D-galactopyranose-(1-4)-3,6-anhydro-alpha-L-galactopyranose-(1-3)-beta-D-galactopyranose-(1-4)-3,6-anhydro-alpha-L-galactopyranose-(1-3)-beta-D-galactopyranose-(1-4)-3,6-anhydro-alpha-L-galactopyranose
;
_entity.formula_weight 936.815
_entity.pdbx_number_of_molecules 2
_entity.pdbx_ec ?
_entity.pdbx_mutation ?
_entity.pdbx_fragment ?
_entity.details ?
#
_pdbx_entity_branch.entity_id 1
_pdbx_entity_branch.type oligosaccharide
#
loop_
_pdbx_entity_branch_descriptor.ordinal
_pdbx_entity_branch_descriptor.entity_id
_pdbx_entity_branch_descriptor.descriptor
_pdbx_entity_branch_descriptor.type
_pdbx_entity_branch_descriptor.program
_pdbx_entity_branch_descriptor.program_version
1 1 'WURCS=2.0/2,6,5/[a1221h-1a_1-5_3-6][a2112h-1b_1-5]/1-2-1-2-1-2/a4-b1_b3-c1_c4-d1_d3-e1_e4-f1' WURCS PDB2Glycan 1.1.0
2 1 '[][<C30O21>]{[(1+1)][b-D-Galp]{}}' LINUCS PDB-CARE ?
#
loop_
_pdbx_entity_branch_link.link_id
_pdbx_entity_branch_link.entity_id
_pdbx_entity_branch_link.entity_branch_list_num_1
_pdbx_entity_branch_link.comp_id_1
_pdbx_entity_branch_link.atom_id_1
_pdbx_entity_branch_link.leaving_atom_id_1
_pdbx_entity_branch_link.entity_branch_list_num_2
_pdbx_entity_branch_link.comp_id_2
_pdbx_entity_branch_link.atom_id_2
_pdbx_entity_branch_link.leaving_atom_id_2
_pdbx_entity_branch_link.value_order
_pdbx_entity_branch_link.details
1 1 2 GAL C1 O1 1 AAL O4 HO4 sing ?
2 1 3 AAL C1 O1 2 GAL O3 HO3 sing ?
3 1 4 GAL C1 O1 3 AAL O4 HO4 sing ?
4 1 5 AAL C1 O1 4 GAL O3 HO3 sing ?
5 1 6 GAL C1 O1 5 AAL O4 HO4 sing ?
#
loop_
_chem_comp.id
_chem_comp.type
_chem_comp.mon_nstd_flag
_chem_comp.name
_chem_comp.pdbx_synonyms
_chem_comp.formula
_chem_comp.formula_weight
AAL 'L-saccharide, alpha linking' . 3,6-anhydro-alpha-L-galactopyranose
'3,6-ANHYDRO-L-GALACTOSE; 3,6-anhydro-alpha-L-galactose; 3,6-anhydro-galactose' 'C6 H10 O5' 162.141
GAL 'D-saccharide, beta linking' . beta-D-galactopyranose 'beta-D-galactose; D-galactose; galactose' 'C6 H12 O6'
180.156
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
GAL 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DGalpb
GAL 'COMMON NAME' GMML 1.0 b-D-galactopyranose
GAL 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-Galp
GAL 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 Gal
#
loop_
_pdbx_branch_scheme.asym_id
_pdbx_branch_scheme.entity_id
_pdbx_branch_scheme.mon_id
_pdbx_branch_scheme.num
_pdbx_branch_scheme.pdb_asym_id
_pdbx_branch_scheme.pdb_mon_id
_pdbx_branch_scheme.pdb_seq_num
_pdbx_branch_scheme.auth_asym_id
_pdbx_branch_scheme.auth_mon_id
_pdbx_branch_scheme.auth_seq_num
_pdbx_branch_scheme.hetero
A 1 AAL 1 A AAL 1 A AGL 6 n
A 1 GAL 2 A GAL 2 A GAL 5 n
A 1 AAL 3 A AAL 3 A AGL 4 n
A 1 GAL 4 A GAL 4 A GAL 3 n
A 1 AAL 5 A AAL 5 A AGL 2 n
A 1 GAL 6 A GAL 6 A GAL 1 n
B 1 AAL 1 B AAL 1 B AGL 6 n
B 1 GAL 2 B GAL 2 B GAL 5 n
B 1 AAL 3 B AAL 3 B AGL 4 n
B 1 GAL 4 B GAL 4 B GAL 3 n
B 1 AAL 5 B AAL 5 B AGL 2 n
B 1 GAL 6 B GAL 6 B GAL 1 n
#
loop_
_pdbx_unobs_or_zero_occ_atoms.id
_pdbx_unobs_or_zero_occ_atoms.PDB_model_num
_pdbx_unobs_or_zero_occ_atoms.polymer_flag
_pdbx_unobs_or_zero_occ_atoms.occupancy_flag
_pdbx_unobs_or_zero_occ_atoms.auth_asym_id
_pdbx_unobs_or_zero_occ_atoms.auth_comp_id
_pdbx_unobs_or_zero_occ_atoms.auth_seq_id
_pdbx_unobs_or_zero_occ_atoms.PDB_ins_code
_pdbx_unobs_or_zero_occ_atoms.auth_atom_id
_pdbx_unobs_or_zero_occ_atoms.label_alt_id
_pdbx_unobs_or_zero_occ_atoms.label_asym_id
_pdbx_unobs_or_zero_occ_atoms.label_comp_id
_pdbx_unobs_or_zero_occ_atoms.label_seq_id
_pdbx_unobs_or_zero_occ_atoms.label_atom_id
1 1 N 1 A AAL 1 ? O1 ? A AAL 1 O1
2 1 N 1 B AAL 1 ? O1 ? B AAL 1 O1
#
_software.classification refinement
_software.name A
_software.version 'LINKED-ATOM LEAST-SQUARES MODEL-BUILDING PROCEDURE'
_software.citation_id ?
_software.pdbx_ordinal 1
#
_cell.entry_id 1AGA
_cell.length_a 1.000
_cell.length_b 1.000
_cell.length_c 1.000
_cell.angle_alpha 90.00
_cell.angle_beta 90.00
_cell.angle_gamma 90.00
_cell.Z_PDB 1
_cell.pdbx_unique_axis ?
#
_symmetry.entry_id 1AGA
_symmetry.space_group_name_H-M 'P 1'
_symmetry.pdbx_full_space_group_name_H-M ?
_symmetry.cell_setting ?
_symmetry.Int_Tables_number 1
#
_exptl.entry_id 1AGA
_exptl.method 'FIBER DIFFRACTION'
_exptl.crystals_number ?
#
_refine.entry_id 1AGA
_refine.ls_number_reflns_obs ?
_refine.ls_number_reflns_all ?
_refine.pdbx_ls_sigma_I ?
_refine.pdbx_ls_sigma_F ?
_refine.pdbx_data_cutoff_high_absF ?
_refine.pdbx_data_cutoff_low_absF ?
_refine.pdbx_data_cutoff_high_rms_absF ?
_refine.ls_d_res_low ?
_refine.ls_d_res_high 3.0
_refine.ls_percent_reflns_obs ?
_refine.ls_R_factor_obs ?
_refine.ls_R_factor_all ?
_refine.ls_R_factor_R_work ?
_refine.ls_R_factor_R_free ?
_refine.ls_R_factor_R_free_error ?
_refine.ls_R_factor_R_free_error_details ?
_refine.ls_percent_reflns_R_free ?
_refine.ls_number_reflns_R_free ?
_refine.ls_number_parameters ?
_refine.ls_number_restraints ?
_refine.occupancy_min ?
_refine.occupancy_max ?
_refine.B_iso_mean ?
_refine.aniso_B[1][1] ?
_refine.aniso_B[2][2] ?
_refine.aniso_B[3][3] ?
_refine.aniso_B[1][2] ?
_refine.aniso_B[1][3] ?
_refine.aniso_B[2][3] ?
_refine.solvent_model_details ?
_refine.solvent_model_param_ksol ?
_refine.solvent_model_param_bsol ?
_refine.pdbx_ls_cross_valid_method ?
_refine.details
;THE TWELVE-RESIDUE CHAIN SEGMENT GIVEN HERE WAS GENERATED
FROM THE PUBLISHED TWO-RESIDUE SEGMENT BY APPLICATION OF
THE CYLINDRICAL-POLAR COORDINATE TRANSFORMATIONS GIVEN IN
THE *JRNL* REFERENCE. THESE WERE CONVERTED TO CARTESIAN
COORDINATES IN THE NORMAL WAY AND THEN TRANSFORMED FROM
PICOMETERS TO ANGSTROMS BY APPLICATION OF THE INVERSE OF
THE *ORIGX* TRANSFORMATION GIVEN BELOW.
;
_refine.pdbx_starting_model ?
_refine.pdbx_method_to_determine_struct ?
_refine.pdbx_isotropic_thermal_model ?
_refine.pdbx_stereochemistry_target_values ?
_refine.pdbx_stereochem_target_val_spec_case ?
_refine.pdbx_R_Free_selection_details ?
_refine.pdbx_overall_ESU_R ?
_refine.pdbx_overall_ESU_R_Free ?
_refine.overall_SU_ML ?
_refine.overall_SU_B ?
_refine.pdbx_refine_id 'FIBER DIFFRACTION'
_refine.pdbx_diffrn_id 1
_refine.pdbx_TLS_residual_ADP_flag ?
_refine.correlation_coeff_Fo_to_Fc ?
_refine.correlation_coeff_Fo_to_Fc_free ?
_refine.pdbx_solvent_vdw_probe_radii ?
_refine.pdbx_solvent_ion_probe_radii ?
_refine.pdbx_solvent_shrinkage_radii ?
_refine.pdbx_overall_phase_error ?
_refine.overall_SU_R_Cruickshank_DPI ?
_refine.pdbx_overall_SU_R_free_Cruickshank_DPI ?
_refine.pdbx_overall_SU_R_Blow_DPI ?
_refine.pdbx_overall_SU_R_free_Blow_DPI ?
#
_refine_hist.pdbx_refine_id 'FIBER DIFFRACTION'
_refine_hist.cycle_id LAST
_refine_hist.pdbx_number_atoms_protein 0
_refine_hist.pdbx_number_atoms_nucleic_acid 0
_refine_hist.pdbx_number_atoms_ligand 126
_refine_hist.number_atoms_solvent 0
_refine_hist.number_atoms_total 126
_refine_hist.d_res_high 3.0
_refine_hist.d_res_low .
#
_database_PDB_matrix.entry_id 1AGA
_database_PDB_matrix.origx[1][1] .100000
_database_PDB_matrix.origx[1][2] 0.000000
_database_PDB_matrix.origx[1][3] 0.000000
_database_PDB_matrix.origx[2][1] 0.000000
_database_PDB_matrix.origx[2][2] .100000
_database_PDB_matrix.origx[2][3] 0.000000
_database_PDB_matrix.origx[3][1] 0.000000
_database_PDB_matrix.origx[3][2] 0.000000
_database_PDB_matrix.origx[3][3] .100000
_database_PDB_matrix.origx_vector[1] 0.00000
_database_PDB_matrix.origx_vector[2] 0.00000
_database_PDB_matrix.origx_vector[3] 0.00000
#
_struct.entry_id 1AGA
_struct.title 'THE AGAROSE DOUBLE HELIX AND ITS FUNCTION IN AGAROSE GEL STRUCTURE'
_struct.pdbx_model_details ?
_struct.pdbx_CASP_flag ?
_struct.pdbx_model_type_details ?
#
_struct_keywords.entry_id 1AGA
_struct_keywords.pdbx_keywords 'TEXTURE OF CONNECTIVE TISSUE'
_struct_keywords.text 'TEXTURE OF CONNECTIVE TISSUE'
#
loop_
_struct_asym.id
_struct_asym.pdbx_blank_PDB_chainid_flag
_struct_asym.pdbx_modified
_struct_asym.entity_id
_struct_asym.details
A N N 1 ?
B N N 1 ?
#
_pdbx_struct_assembly.id 1
_pdbx_struct_assembly.details author_defined_assembly
_pdbx_struct_assembly.method_details ?
_pdbx_struct_assembly.oligomeric_details ?
_pdbx_struct_assembly.oligomeric_count ?
#
_pdbx_struct_assembly_gen.assembly_id 1
_pdbx_struct_assembly_gen.oper_expression 1
_pdbx_struct_assembly_gen.asym_id_list A,B
#
_pdbx_struct_oper_list.id 1
_pdbx_struct_oper_list.type 'identity operation'
_pdbx_struct_oper_list.name 1_555
_pdbx_struct_oper_list.symmetry_operation x,y,z
_pdbx_struct_oper_list.matrix[1][1] 1.0000000000
_pdbx_struct_oper_list.matrix[1][2] 0.0000000000
_pdbx_struct_oper_list.matrix[1][3] 0.0000000000
_pdbx_struct_oper_list.vector[1] 0.0000000000
_pdbx_struct_oper_list.matrix[2][1] 0.0000000000
_pdbx_struct_oper_list.matrix[2][2] 1.0000000000
_pdbx_struct_oper_list.matrix[2][3] 0.0000000000
_pdbx_struct_oper_list.vector[2] 0.0000000000
_pdbx_struct_oper_list.matrix[3][1] 0.0000000000
_pdbx_struct_oper_list.matrix[3][2] 0.0000000000
_pdbx_struct_oper_list.matrix[3][3] 1.0000000000
_pdbx_struct_oper_list.vector[3] 0.0000000000
#
loop_
_struct_conn.id
_struct_conn.conn_type_id
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.pdbx_PDB_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.details
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
_struct_conn.pdbx_role
covale1 covale one ? A AAL . O4 ? ? ? 1_555 A GAL . C1 ? ? A AAL 1 A GAL 2 1_555 ? ? ? ? ? ? ? 1.389 ? ?
covale2 covale both ? A GAL . O3 ? ? ? 1_555 A AAL . C1 ? ? A GAL 2 A AAL 3 1_555 ? ? ? ? ? ? ? 1.377 ? ?
covale3 covale one ? A AAL . O4 ? ? ? 1_555 A GAL . C1 ? ? A AAL 3 A GAL 4 1_555 ? ? ? ? ? ? ? 1.389 ? ?
covale4 covale both ? A GAL . O3 ? ? ? 1_555 A AAL . C1 ? ? A GAL 4 A AAL 5 1_555 ? ? ? ? ? ? ? 1.378 ? ?
covale5 covale one ? A AAL . O4 ? ? ? 1_555 A GAL . C1 ? ? A AAL 5 A GAL 6 1_555 ? ? ? ? ? ? ? 1.389 ? ?
covale6 covale one ? B AAL . O4 ? ? ? 1_555 B GAL . C1 ? ? B AAL 1 B GAL 2 1_555 ? ? ? ? ? ? ? 1.389 ? ?
covale7 covale both ? B GAL . O3 ? ? ? 1_555 B AAL . C1 ? ? B GAL 2 B AAL 3 1_555 ? ? ? ? ? ? ? 1.378 ? ?
covale8 covale one ? B AAL . O4 ? ? ? 1_555 B GAL . C1 ? ? B AAL 3 B GAL 4 1_555 ? ? ? ? ? ? ? 1.389 ? ?
covale9 covale both ? B GAL . O3 ? ? ? 1_555 B AAL . C1 ? ? B GAL 4 B AAL 5 1_555 ? ? ? ? ? ? ? 1.377 ? ?
covale10 covale one ? B AAL . O4 ? ? ? 1_555 B GAL . C1 ? ? B AAL 5 B GAL 6 1_555 ? ? ? ? ? ? ? 1.389 ? ?
#
_struct_conn_type.id covale
_struct_conn_type.criteria ?
_struct_conn_type.reference ?
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_ordinal
AAL C1 C N R 1
AAL C2 C N S 2
AAL C3 C N R 3
AAL C4 C N R 4
AAL C5 C N S 5
AAL C6 C N N 6
AAL O1 O N N 7
AAL O2 O N N 8
AAL O3 O N N 9
AAL O4 O N N 10
AAL O5 O N N 11
AAL H1 H N N 12
AAL H2 H N N 13
AAL H3 H N N 14
AAL H4 H N N 15
AAL H5 H N N 16
AAL H61 H N N 17
AAL H62 H N N 18
AAL HO1 H N N 19
AAL HO2 H N N 20
AAL HO4 H N N 21
GAL C1 C N R 22
GAL C2 C N R 23
GAL C3 C N S 24
GAL C4 C N R 25
GAL C5 C N R 26
GAL C6 C N N 27
GAL O1 O N N 28
GAL O2 O N N 29
GAL O3 O N N 30
GAL O4 O N N 31
GAL O5 O N N 32
GAL O6 O N N 33
GAL H1 H N N 34
GAL H2 H N N 35
GAL H3 H N N 36
GAL H4 H N N 37
GAL H5 H N N 38
GAL H61 H N N 39
GAL H62 H N N 40
GAL HO1 H N N 41
GAL HO2 H N N 42
GAL HO3 H N N 43
GAL HO4 H N N 44
GAL HO6 H N N 45
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
AAL C1 C2 sing N N 1
AAL C1 O1 sing N N 2
AAL C1 O5 sing N N 3
AAL C1 H1 sing N N 4
AAL C2 C3 sing N N 5
AAL C2 O2 sing N N 6
AAL C2 H2 sing N N 7
AAL C3 C4 sing N N 8
AAL C3 O3 sing N N 9
AAL C3 H3 sing N N 10
AAL C4 C5 sing N N 11
AAL C4 O4 sing N N 12
AAL C4 H4 sing N N 13
AAL C5 C6 sing N N 14
AAL C5 O5 sing N N 15
AAL C5 H5 sing N N 16
AAL C6 O3 sing N N 17
AAL C6 H61 sing N N 18
AAL C6 H62 sing N N 19
AAL O1 HO1 sing N N 20
AAL O2 HO2 sing N N 21
AAL O4 HO4 sing N N 22
GAL C1 C2 sing N N 23
GAL C1 O1 sing N N 24
GAL C1 O5 sing N N 25
GAL C1 H1 sing N N 26
GAL C2 C3 sing N N 27
GAL C2 O2 sing N N 28
GAL C2 H2 sing N N 29
GAL C3 C4 sing N N 30
GAL C3 O3 sing N N 31
GAL C3 H3 sing N N 32
GAL C4 C5 sing N N 33
GAL C4 O4 sing N N 34
GAL C4 H4 sing N N 35
GAL C5 C6 sing N N 36
GAL C5 O5 sing N N 37
GAL C5 H5 sing N N 38
GAL C6 O6 sing N N 39
GAL C6 H61 sing N N 40
GAL C6 H62 sing N N 41
GAL O1 HO1 sing N N 42
GAL O2 HO2 sing N N 43
GAL O3 HO3 sing N N 44
GAL O4 HO4 sing N N 45
GAL O6 HO6 sing N N 46
#
_database_PDB_tvect.id 1
_database_PDB_tvect.vector[1] 0.00000
_database_PDB_tvect.vector[2] 0.00000
_database_PDB_tvect.vector[3] 19.00000
_database_PDB_tvect.details ?
#
loop_
_pdbx_entity_branch_list.entity_id
_pdbx_entity_branch_list.comp_id
_pdbx_entity_branch_list.num
_pdbx_entity_branch_list.hetero
1 AAL 1 n
1 GAL 2 n
1 AAL 3 n
1 GAL 4 n
1 AAL 5 n
1 GAL 6 n
#
_atom_sites.entry_id 1AGA
_atom_sites.fract_transf_matrix[1][1] 1.000000
_atom_sites.fract_transf_matrix[1][2] 0.000000
_atom_sites.fract_transf_matrix[1][3] 0.000000
_atom_sites.fract_transf_matrix[2][1] 0.000000
_atom_sites.fract_transf_matrix[2][2] 1.000000
_atom_sites.fract_transf_matrix[2][3] 0.000000
_atom_sites.fract_transf_matrix[3][1] 0.000000
_atom_sites.fract_transf_matrix[3][2] 0.000000
_atom_sites.fract_transf_matrix[3][3] 1.000000
_atom_sites.fract_transf_vector[1] 0.00000
_atom_sites.fract_transf_vector[2] 0.00000
_atom_sites.fract_transf_vector[3] 0.00000
#
loop_
_atom_type.symbol
C
O
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_alt_id
_atom_site.label_comp_id
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.label_seq_id
_atom_site.pdbx_PDB_ins_code
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_seq_id
_atom_site.auth_comp_id
_atom_site.auth_asym_id
_atom_site.auth_atom_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 . AAL A 1 . ? 3.219 -0.637 19.462 1.00 0.00 ? 1 AAL A C1 1
HETATM 2 C C2 . AAL A 1 . ? 4.519 0.024 18.980 1.00 0.00 ? 1 AAL A C2 1
HETATM 3 C C3 . AAL A 1 . ? 4.163 1.425 18.481 1.00 0.00 ? 1 AAL A C3 1
HETATM 4 C C4 . AAL A 1 . ? 3.190 1.341 17.330 1.00 0.00 ? 1 AAL A C4 1
HETATM 5 C C5 . AAL A 1 . ? 1.962 0.991 18.165 1.00 0.00 ? 1 AAL A C5 1
HETATM 6 C C6 . AAL A 1 . ? 2.093 1.952 19.331 1.00 0.00 ? 1 AAL A C6 1
HETATM 7 O O2 . AAL A 1 . ? 5.119 -0.701 17.908 1.00 0.00 ? 1 AAL A O2 1
HETATM 8 O O3 . AAL A 1 . ? 3.517 2.147 19.514 1.00 0.00 ? 1 AAL A O3 1
HETATM 9 O O4 . AAL A 1 . ? 2.970 2.609 16.719 1.00 0.00 ? 1 AAL A O4 1
HETATM 10 O O5 . AAL A 1 . ? 2.107 -0.398 18.564 1.00 0.00 ? 1 AAL A O5 1
HETATM 11 C C1 . GAL A 1 . ? 2.847 2.618 15.335 1.00 0.00 ? 2 GAL A C1 1
HETATM 12 C C2 . GAL A 1 . ? 1.457 3.124 14.979 1.00 0.00 ? 2 GAL A C2 1
HETATM 13 C C3 . GAL A 1 . ? 1.316 3.291 13.473 1.00 0.00 ? 2 GAL A C3 1
HETATM 14 C C4 . GAL A 1 . ? 2.447 4.155 12.931 1.00 0.00 ? 2 GAL A C4 1
HETATM 15 C C5 . GAL A 1 . ? 3.795 3.614 13.394 1.00 0.00 ? 2 GAL A C5 1
HETATM 16 C C6 . GAL A 1 . ? 4.956 4.494 12.982 1.00 0.00 ? 2 GAL A C6 1
HETATM 17 O O2 . GAL A 1 . ? 0.483 2.217 15.479 1.00 0.00 ? 2 GAL A O2 1
HETATM 18 O O3 . GAL A 1 . ? 0.021 3.962 13.166 1.00 0.00 ? 2 GAL A O3 1
HETATM 19 O O4 . GAL A 1 . ? 2.311 5.497 13.395 1.00 0.00 ? 2 GAL A O4 1
HETATM 20 O O5 . GAL A 1 . ? 3.830 3.522 14.827 1.00 0.00 ? 2 GAL A O5 1
HETATM 21 O O6 . GAL A 1 . ? 5.150 4.461 11.576 1.00 0.00 ? 2 GAL A O6 1
HETATM 22 C C1 . AAL A 1 . ? -1.057 3.106 13.132 1.00 0.00 ? 3 AAL A C1 1
HETATM 23 C C2 . AAL A 1 . ? -2.280 3.902 12.650 1.00 0.00 ? 3 AAL A C2 1
HETATM 24 C C3 . AAL A 1 . ? -3.316 2.893 12.151 1.00 0.00 ? 3 AAL A C3 1
HETATM 25 C C4 . AAL A 1 . ? -2.756 2.092 11.000 1.00 0.00 ? 3 AAL A C4 1
HETATM 26 C C5 . AAL A 1 . ? -1.839 1.204 11.835 1.00 0.00 ? 3 AAL A C5 1
HETATM 27 C C6 . AAL A 1 . ? -2.737 0.837 13.001 1.00 0.00 ? 3 AAL A C6 1
HETATM 28 O O2 . AAL A 1 . ? -1.952 4.784 11.578 1.00 0.00 ? 3 AAL A O2 1
HETATM 29 O O3 . AAL A 1 . ? -3.617 1.972 13.184 1.00 0.00 ? 3 AAL A O3 1
HETATM 30 O O4 . AAL A 1 . ? -3.744 1.267 10.389 1.00 0.00 ? 3 AAL A O4 1
HETATM 31 O O5 . AAL A 1 . ? -0.709 2.024 12.234 1.00 0.00 ? 3 AAL A O5 1
HETATM 32 C C1 . GAL A 1 . ? -3.690 1.156 9.005 1.00 0.00 ? 4 GAL A C1 1
HETATM 33 C C2 . GAL A 1 . ? -3.434 -0.300 8.649 1.00 0.00 ? 4 GAL A C2 1
HETATM 34 C C3 . GAL A 1 . ? -3.508 -0.506 7.143 1.00 0.00 ? 4 GAL A C3 1
HETATM 35 C C4 . GAL A 1 . ? -4.822 0.042 6.601 1.00 0.00 ? 4 GAL A C4 1
HETATM 36 C C5 . GAL A 1 . ? -5.027 1.480 7.064 1.00 0.00 ? 4 GAL A C5 1
HETATM 37 C C6 . GAL A 1 . ? -6.370 2.045 6.652 1.00 0.00 ? 4 GAL A C6 1
HETATM 38 O O2 . GAL A 1 . ? -2.162 -0.690 9.149 1.00 0.00 ? 4 GAL A O2 1
HETATM 39 O O3 . GAL A 1 . ? -3.442 -1.963 6.836 1.00 0.00 ? 4 GAL A O3 1
HETATM 40 O O4 . GAL A 1 . ? -5.916 -0.747 7.065 1.00 0.00 ? 4 GAL A O4 1
HETATM 41 O O5 . GAL A 1 . ? -4.965 1.556 8.497 1.00 0.00 ? 4 GAL A O5 1
HETATM 42 O O6 . GAL A 1 . ? -6.439 2.230 5.246 1.00 0.00 ? 4 GAL A O6 1
HETATM 43 C C1 . AAL A 1 . ? -2.161 -2.469 6.802 1.00 0.00 ? 5 AAL A C1 1
HETATM 44 C C2 . AAL A 1 . ? -2.239 -3.925 6.320 1.00 0.00 ? 5 AAL A C2 1
HETATM 45 C C3 . AAL A 1 . ? -0.847 -4.318 5.821 1.00 0.00 ? 5 AAL A C3 1
HETATM 46 C C4 . AAL A 1 . ? -0.434 -3.433 4.670 1.00 0.00 ? 5 AAL A C4 1
HETATM 47 C C5 . AAL A 1 . ? -0.123 -2.195 5.505 1.00 0.00 ? 5 AAL A C5 1
HETATM 48 C C6 . AAL A 1 . ? 0.644 -2.789 6.671 1.00 0.00 ? 5 AAL A C6 1
HETATM 49 O O2 . AAL A 1 . ? -3.167 -4.083 5.248 1.00 0.00 ? 5 AAL A O2 1
HETATM 50 O O3 . AAL A 1 . ? 0.101 -4.119 6.854 1.00 0.00 ? 5 AAL A O3 1
HETATM 51 O O4 . AAL A 1 . ? 0.775 -3.876 4.059 1.00 0.00 ? 5 AAL A O4 1
HETATM 52 O O5 . AAL A 1 . ? -1.398 -1.625 5.904 1.00 0.00 ? 5 AAL A O5 1
HETATM 53 C C1 . GAL A 1 . ? 0.844 -3.774 2.675 1.00 0.00 ? 6 GAL A C1 1
HETATM 54 C C2 . GAL A 1 . ? 1.977 -2.824 2.319 1.00 0.00 ? 6 GAL A C2 1
HETATM 55 C C3 . GAL A 1 . ? 2.192 -2.785 0.813 1.00 0.00 ? 6 GAL A C3 1
HETATM 56 C C4 . GAL A 1 . ? 2.375 -4.197 0.271 1.00 0.00 ? 6 GAL A C4 1
HETATM 57 C C5 . GAL A 1 . ? 1.232 -5.093 0.734 1.00 0.00 ? 6 GAL A C5 1
HETATM 58 C C6 . GAL A 1 . ? 1.414 -6.539 0.322 1.00 0.00 ? 6 GAL A C6 1
HETATM 59 O O2 . GAL A 1 . ? 1.678 -1.527 2.819 1.00 0.00 ? 6 GAL A O2 1
HETATM 60 O O3 . GAL A 1 . ? 3.421 -1.999 0.496 1.00 0.00 ? 6 GAL A O3 1
HETATM 61 O O4 . GAL A 1 . ? 3.605 -4.750 0.735 1.00 0.00 ? 6 GAL A O4 1
HETATM 62 O O5 . GAL A 1 . ? 1.135 -5.078 2.167 1.00 0.00 ? 6 GAL A O5 1
HETATM 63 O O6 . GAL A 1 . ? 1.289 -6.691 -1.084 1.00 0.00 ? 6 GAL A O6 1
HETATM 64 C C1 . AAL B 1 . ? -1.057 3.106 22.602 1.00 0.00 ? 1 AAL B C1 1
HETATM 65 C C2 . AAL B 1 . ? -2.280 3.902 22.120 1.00 0.00 ? 1 AAL B C2 1
HETATM 66 C C3 . AAL B 1 . ? -3.316 2.893 21.621 1.00 0.00 ? 1 AAL B C3 1
HETATM 67 C C4 . AAL B 1 . ? -2.756 2.092 20.470 1.00 0.00 ? 1 AAL B C4 1
HETATM 68 C C5 . AAL B 1 . ? -1.839 1.204 21.305 1.00 0.00 ? 1 AAL B C5 1
HETATM 69 C C6 . AAL B 1 . ? -2.737 0.837 22.471 1.00 0.00 ? 1 AAL B C6 1
HETATM 70 O O2 . AAL B 1 . ? -1.952 4.784 21.048 1.00 0.00 ? 1 AAL B O2 1
HETATM 71 O O3 . AAL B 1 . ? -3.617 1.972 22.654 1.00 0.00 ? 1 AAL B O3 1
HETATM 72 O O4 . AAL B 1 . ? -3.744 1.267 19.859 1.00 0.00 ? 1 AAL B O4 1
HETATM 73 O O5 . AAL B 1 . ? -0.709 2.024 21.704 1.00 0.00 ? 1 AAL B O5 1
HETATM 74 C C1 . GAL B 1 . ? -3.690 1.156 18.475 1.00 0.00 ? 2 GAL B C1 1
HETATM 75 C C2 . GAL B 1 . ? -3.434 -0.300 18.119 1.00 0.00 ? 2 GAL B C2 1
HETATM 76 C C3 . GAL B 1 . ? -3.508 -0.506 16.613 1.00 0.00 ? 2 GAL B C3 1
HETATM 77 C C4 . GAL B 1 . ? -4.822 0.042 16.071 1.00 0.00 ? 2 GAL B C4 1
HETATM 78 C C5 . GAL B 1 . ? -5.027 1.480 16.534 1.00 0.00 ? 2 GAL B C5 1
HETATM 79 C C6 . GAL B 1 . ? -6.370 2.045 16.122 1.00 0.00 ? 2 GAL B C6 1
HETATM 80 O O2 . GAL B 1 . ? -2.162 -0.690 18.619 1.00 0.00 ? 2 GAL B O2 1
HETATM 81 O O3 . GAL B 1 . ? -3.442 -1.963 16.336 1.00 0.00 ? 2 GAL B O3 1
HETATM 82 O O4 . GAL B 1 . ? -5.916 -0.747 16.535 1.00 0.00 ? 2 GAL B O4 1
HETATM 83 O O5 . GAL B 1 . ? -4.965 1.556 17.967 1.00 0.00 ? 2 GAL B O5 1
HETATM 84 O O6 . GAL B 1 . ? -6.439 2.230 14.716 1.00 0.00 ? 2 GAL B O6 1
HETATM 85 C C1 . AAL B 1 . ? -2.161 -2.469 16.302 1.00 0.00 ? 3 AAL B C1 1
HETATM 86 C C2 . AAL B 1 . ? -2.239 -3.925 15.820 1.00 0.00 ? 3 AAL B C2 1
HETATM 87 C C3 . AAL B 1 . ? -0.847 -4.318 15.321 1.00 0.00 ? 3 AAL B C3 1
HETATM 88 C C4 . AAL B 1 . ? -0.434 -3.433 14.170 1.00 0.00 ? 3 AAL B C4 1
HETATM 89 C C5 . AAL B 1 . ? -0.123 -2.195 15.005 1.00 0.00 ? 3 AAL B C5 1
HETATM 90 C C6 . AAL B 1 . ? 0.644 -2.789 16.171 1.00 0.00 ? 3 AAL B C6 1
HETATM 91 O O2 . AAL B 1 . ? -3.167 -4.083 14.748 1.00 0.00 ? 3 AAL B O2 1
HETATM 92 O O3 . AAL B 1 . ? 0.101 -4.119 16.354 1.00 0.00 ? 3 AAL B O3 1
HETATM 93 O O4 . AAL B 1 . ? 0.775 -3.876 13.559 1.00 0.00 ? 3 AAL B O4 1
HETATM 94 O O5 . AAL B 1 . ? -1.398 -1.625 15.404 1.00 0.00 ? 3 AAL B O5 1
HETATM 95 C C1 . GAL B 1 . ? 0.844 -3.774 12.175 1.00 0.00 ? 4 GAL B C1 1
HETATM 96 C C2 . GAL B 1 . ? 1.977 -2.824 11.819 1.00 0.00 ? 4 GAL B C2 1
HETATM 97 C C3 . GAL B 1 . ? 2.192 -2.785 10.313 1.00 0.00 ? 4 GAL B C3 1
HETATM 98 C C4 . GAL B 1 . ? 2.375 -4.197 9.771 1.00 0.00 ? 4 GAL B C4 1
HETATM 99 C C5 . GAL B 1 . ? 1.232 -5.093 10.234 1.00 0.00 ? 4 GAL B C5 1
HETATM 100 C C6 . GAL B 1 . ? 1.414 -6.539 9.822 1.00 0.00 ? 4 GAL B C6 1
HETATM 101 O O2 . GAL B 1 . ? 1.678 -1.527 12.319 1.00 0.00 ? 4 GAL B O2 1
HETATM 102 O O3 . GAL B 1 . ? 3.421 -1.999 10.036 1.00 0.00 ? 4 GAL B O3 1
HETATM 103 O O4 . GAL B 1 . ? 3.605 -4.750 10.235 1.00 0.00 ? 4 GAL B O4 1
HETATM 104 O O5 . GAL B 1 . ? 1.135 -5.078 11.667 1.00 0.00 ? 4 GAL B O5 1
HETATM 105 O O6 . GAL B 1 . ? 1.289 -6.691 8.416 1.00 0.00 ? 4 GAL B O6 1
HETATM 106 C C1 . AAL B 1 . ? 3.219 -0.637 10.002 1.00 0.00 ? 5 AAL B C1 1
HETATM 107 C C2 . AAL B 1 . ? 4.519 0.024 9.520 1.00 0.00 ? 5 AAL B C2 1
HETATM 108 C C3 . AAL B 1 . ? 4.163 1.425 9.021 1.00 0.00 ? 5 AAL B C3 1
HETATM 109 C C4 . AAL B 1 . ? 3.190 1.341 7.870 1.00 0.00 ? 5 AAL B C4 1
HETATM 110 C C5 . AAL B 1 . ? 1.962 0.991 8.705 1.00 0.00 ? 5 AAL B C5 1
HETATM 111 C C6 . AAL B 1 . ? 2.093 1.952 9.871 1.00 0.00 ? 5 AAL B C6 1
HETATM 112 O O2 . AAL B 1 . ? 5.119 -0.701 8.448 1.00 0.00 ? 5 AAL B O2 1
HETATM 113 O O3 . AAL B 1 . ? 3.517 2.147 10.054 1.00 0.00 ? 5 AAL B O3 1
HETATM 114 O O4 . AAL B 1 . ? 2.970 2.609 7.259 1.00 0.00 ? 5 AAL B O4 1
HETATM 115 O O5 . AAL B 1 . ? 2.107 -0.398 9.104 1.00 0.00 ? 5 AAL B O5 1
HETATM 116 C C1 . GAL B 1 . ? 2.847 2.618 5.875 1.00 0.00 ? 6 GAL B C1 1
HETATM 117 C C2 . GAL B 1 . ? 1.457 3.124 5.519 1.00 0.00 ? 6 GAL B C2 1
HETATM 118 C C3 . GAL B 1 . ? 1.316 3.291 4.013 1.00 0.00 ? 6 GAL B C3 1
HETATM 119 C C4 . GAL B 1 . ? 2.447 4.155 3.471 1.00 0.00 ? 6 GAL B C4 1
HETATM 120 C C5 . GAL B 1 . ? 3.795 3.614 3.934 1.00 0.00 ? 6 GAL B C5 1
HETATM 121 C C6 . GAL B 1 . ? 4.956 4.494 3.522 1.00 0.00 ? 6 GAL B C6 1
HETATM 122 O O2 . GAL B 1 . ? 0.483 2.217 6.019 1.00 0.00 ? 6 GAL B O2 1
HETATM 123 O O3 . GAL B 1 . ? 0.021 3.962 3.636 1.00 0.00 ? 6 GAL B O3 1
HETATM 124 O O4 . GAL B 1 . ? 2.311 5.497 3.935 1.00 0.00 ? 6 GAL B O4 1
HETATM 125 O O5 . GAL B 1 . ? 3.830 3.522 5.367 1.00 0.00 ? 6 GAL B O5 1
HETATM 126 O O6 . GAL B 1 . ? 5.150 4.461 2.116 1.00 0.00 ? 6 GAL B O6 1
#