1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Feng, B.
Stone, M.P.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
1
90.00
90.00
90.00
1.000
1.000
1.000
C10 H14 N5 O6 P
331.222
y
2'-DEOXYADENOSINE-5'-MONOPHOSPHATE
DNA linking
C9 H14 N3 O7 P
307.197
y
2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE
DNA linking
C10 H14 N5 O7 P
347.221
y
2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE
DNA linking
C10 H15 N2 O8 P
322.208
y
THYMIDINE-5'-MONOPHOSPHATE
DNA linking
US
Chem.Res.Toxicol.
CRTOEC
2140
0893-228X
8
821
832
10.1021/tx00048a002
7492731
Solution structure of an oligodeoxynucleotide containing the human n-ras codon 61 sequence refined from 1H NMR using molecular dynamics restrained by nuclear Overhauser effects.
1995
10.2210/pdb1agh/pdb
pdb_00001agh
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
HUMAN N-RAS PROTOONCOGENE
3416.263
DNA (5'-D(*CP*GP*GP*AP*CP*AP*AP*GP*AP*AP*G)-3')
1
syn
polymer
HUMAN N-RAS PROTOONCOGENE
3291.145
DNA (5'-D(*CP*TP*TP*CP*TP*TP*GP*TP*CP*CP*G)-3')
1
syn
polymer
no
no
(DC)(DG)(DG)(DA)(DC)(DA)(DA)(DG)(DA)(DA)(DG)
CGGACAAGAAG
A
polydeoxyribonucleotide
no
no
(DC)(DT)(DT)(DC)(DT)(DT)(DG)(DT)(DC)(DC)(DG)
CTTCTTGTCCG
B
polydeoxyribonucleotide
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
-19.530
1
19
A
1
B
22
-0.095
A_DC1:DG22_B
1
5.556
0.756
0.477
-0.329
3.594
1
19
A
2
B
21
-0.945
A_DG2:DC21_B
2
-6.030
-0.662
0.188
-0.343
4.570
1
19
A
3
B
20
-2.137
A_DG3:DC20_B
3
-13.583
-0.541
-0.011
-0.353
0.975
1
20
A
4
B
19
-3.889
A_DA4:DT19_B
4
-17.529
0.355
-0.162
-0.052
3.464
1
19
A
5
B
18
-0.449
A_DC5:DG18_B
5
-16.068
0.688
-0.242
-0.402
-6.292
1
20
A
6
B
17
3.044
A_DA6:DT17_B
6
-15.656
0.207
-0.190
-0.128
8.021
1
20
A
7
B
16
-4.972
A_DA7:DT16_B
7
-12.160
0.612
-0.031
-0.129
6.910
1
19
A
8
B
15
-1.315
A_DG8:DC15_B
8
-12.156
-0.639
-0.018
-0.373
10.548
1
20
A
9
B
14
-4.868
A_DA9:DT14_B
9
-22.684
0.358
-0.176
-0.157
10.112
1
20
A
10
B
13
0.632
A_DA10:DT13_B
10
-12.932
0.318
-0.079
-0.163
27.069
1
19
A
11
B
12
-2.478
A_DG11:DC12_B
11
-0.369
-0.648
0.616
-0.222
2.635
30.269
A
A
1
2
-5.949
B
B
22
21
2.665
-3.095
-0.147
-0.140
AA_DC1DG2:DC21DG22_BB
1
3.295
-6.333
29.937
0.242
0.825
3.293
35.307
A
A
2
3
0.598
B
B
21
20
3.292
0.363
-0.126
0.062
AA_DG2DG3:DC20DC21_BB
2
0.076
-0.125
35.305
0.049
0.218
3.413
42.730
A
A
3
4
-4.055
B
B
20
19
3.437
-2.952
0.014
0.258
AA_DG3DA4:DT19DC20_BB
3
0.042
-0.058
42.632
0.664
-0.015
3.176
37.621
A
A
4
5
-8.561
B
B
19
18
3.207
-5.500
0.253
0.052
AA_DA4DC5:DG18DT19_BB
4
1.944
-3.025
37.182
0.783
-0.144
3.562
39.449
A
A
5
6
12.752
B
B
18
17
3.564
8.545
0.230
0.372
AA_DC5DA6:DT17DG18_BB
5
-0.147
0.219
38.548
-0.561
-0.360
2.867
37.100
A
A
6
7
-3.672
B
B
17
16
2.875
-2.335
-0.678
0.392
AA_DA6DA7:DT16DT17_BB
6
-1.273
2.002
37.008
0.890
0.916
3.279
31.506
A
A
7
8
1.346
B
B
16
15
3.294
0.731
0.246
-0.144
AA_DA7DG8:DC15DT16_BB
7
-1.124
2.071
31.478
-0.402
-0.664
3.076
43.073
A
A
8
9
0.448
B
B
15
14
3.096
0.329
-0.402
0.339
AA_DG8DA9:DT14DC15_BB
8
2.177
-2.966
43.020
0.431
0.750
3.098
33.389
A
A
9
10
6.085
B
B
14
13
3.128
3.489
0.370
0.029
AA_DA9DA10:DT13DT14_BB
9
-1.294
2.257
33.187
-0.501
-0.848
2.794
34.381
A
A
10
11
8.400
B
B
13
12
2.687
4.916
-0.902
0.061
AA_DA10DG11:DC12DT13_BB
10
-6.989
11.941
33.333
-0.551
0.596
database_2
pdbx_database_status
pdbx_nmr_software
pdbx_struct_assembly
pdbx_struct_oper_list
repository
Initial release
Version format compliance
Version format compliance
Data collection
Database references
Derived calculations
Other
1
0
1997-09-17
1
1
2008-03-24
1
2
2011-07-13
1
3
2022-02-16
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_database_status.process_site
_pdbx_nmr_software.name
Y
BNL
1997-03-25
REL
THIS STRUCTURE PROVIDED THE BEST-FIT FOR THE NOE DATA BASED ON THE RELAXATION MATRIX ANALYSIS USING CORMA.
1
1
NOESY
2QF-COSY
TOCSY
6.9
293
K
REFINEMENT DETAILS CAN BE FOUND IN THE JRNL CITATION ABOVE.
NOE-RESTRAINED MOLECULAR DYNAMICS/SIMULATED ANNEALING
BRUNGER
refinement
X-PLOR
3.1
structure solution
Felix
structure solution
X-PLOR
structure solution
MARDIGRAS
structure solution
CORMA
500
Bruker
AMX500
C
1
n
1
DC
1
A
G
2
n
2
DG
2
A
G
3
n
3
DG
3
A
A
4
n
4
DA
4
A
C
5
n
5
DC
5
A
A
6
n
6
DA
6
A
A
7
n
7
DA
7
A
G
8
n
8
DG
8
A
A
9
n
9
DA
9
A
A
10
n
10
DA
10
A
G
11
n
11
DG
11
A
C
12
n
1
DC
12
B
T
13
n
2
DT
13
B
T
14
n
3
DT
14
B
C
15
n
4
DC
15
B
T
16
n
5
DT
16
B
T
17
n
6
DT
17
B
G
18
n
7
DG
18
B
T
19
n
8
DT
19
B
C
20
n
9
DC
20
B
C
21
n
10
DC
21
B
G
22
n
11
DG
22
B
author_defined_assembly
2
dimeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1
2.87
0.30
108.30
111.17
A
A
A
O4'
C1'
N1
DC
DC
DC
1
1
1
N
1
2.36
0.30
108.30
110.66
A
A
A
O4'
C1'
N9
DG
DG
DG
2
2
2
N
1
4.55
0.50
113.10
117.65
A
A
A
N7
C8
N9
DG
DG
DG
2
2
2
N
1
-3.59
0.40
106.40
102.81
A
A
A
C8
N9
C4
DG
DG
DG
2
2
2
N
1
4.30
0.50
113.10
117.40
A
A
A
N7
C8
N9
DG
DG
DG
3
3
3
N
1
-2.46
0.40
106.40
103.94
A
A
A
C8
N9
C4
DG
DG
DG
3
3
3
N
1
2.85
0.30
108.30
111.15
A
A
A
O4'
C1'
N9
DA
DA
DA
4
4
4
N
1
3.62
0.50
113.80
117.42
A
A
A
N7
C8
N9
DA
DA
DA
4
4
4
N
1
2.57
0.30
108.30
110.87
A
A
A
O4'
C1'
N1
DC
DC
DC
5
5
5
N
1
2.76
0.30
108.30
111.06
A
A
A
O4'
C1'
N9
DA
DA
DA
6
6
6
N
1
3.71
0.50
113.80
117.51
A
A
A
N7
C8
N9
DA
DA
DA
6
6
6
N
1
2.87
0.30
108.30
111.17
A
A
A
O4'
C1'
N9
DA
DA
DA
7
7
7
N
1
3.55
0.50
113.80
117.35
A
A
A
N7
C8
N9
DA
DA
DA
7
7
7
N
1
3.84
0.30
108.30
112.14
A
A
A
O4'
C1'
N9
DG
DG
DG
8
8
8
N
1
4.50
0.50
113.10
117.60
A
A
A
N7
C8
N9
DG
DG
DG
8
8
8
N
1
-2.85
0.40
106.40
103.55
A
A
A
C8
N9
C4
DG
DG
DG
8
8
8
N
1
-37.02
1.90
104.00
66.98
A
A
A
O3'
P
O5'
DG
DA
DA
8
9
9
Y
1
-28.43
2.20
105.20
76.77
A
A
A
O3'
P
OP2
DG
DA
DA
8
9
9
Y
1
18.40
1.10
110.50
128.90
A
A
A
O3'
P
OP1
DG
DA
DA
8
9
9
Y
1
-22.27
1.50
119.60
97.33
A
A
A
OP1
P
OP2
DA
DA
DA
9
9
9
N
1
-22.45
0.90
105.70
83.25
A
A
A
O5'
P
OP1
DA
DA
DA
9
9
9
N
1
21.59
1.20
110.70
132.29
A
A
A
O5'
P
OP2
DA
DA
DA
9
9
9
N
1
2.00
0.30
108.30
110.30
A
A
A
O4'
C1'
N9
DA
DA
DA
9
9
9
N
1
3.88
0.50
113.80
117.68
A
A
A
N7
C8
N9
DA
DA
DA
9
9
9
N
1
2.92
0.30
108.30
111.22
A
A
A
O4'
C1'
N9
DA
DA
DA
10
10
10
N
1
3.82
0.50
113.80
117.62
A
A
A
N7
C8
N9
DA
DA
DA
10
10
10
N
1
-2.47
0.40
105.80
103.33
A
A
A
C8
N9
C4
DA
DA
DA
10
10
10
N
1
2.36
0.30
108.30
110.66
A
A
A
O4'
C1'
N9
DG
DG
DG
11
11
11
N
1
4.53
0.50
113.10
117.63
A
A
A
N7
C8
N9
DG
DG
DG
11
11
11
N
1
-2.69
0.40
106.40
103.71
A
A
A
C8
N9
C4
DG
DG
DG
11
11
11
N
1
2.38
0.30
108.30
110.68
B
B
B
O4'
C1'
N1
DC
DC
DC
12
12
12
N
1
2.69
0.30
108.30
110.99
B
B
B
O4'
C1'
N1
DT
DT
DT
13
13
13
N
1
3.07
0.30
108.30
111.37
B
B
B
O4'
C1'
N1
DT
DT
DT
14
14
14
N
1
3.38
0.30
108.30
111.68
B
B
B
O4'
C1'
N1
DC
DC
DC
15
15
15
N
1
-35.03
1.90
104.00
68.97
B
B
B
O3'
P
O5'
DC
DT
DT
15
16
16
Y
1
-29.09
2.20
105.20
76.11
B
B
B
O3'
P
OP2
DC
DT
DT
15
16
16
Y
1
7.13
1.10
110.50
117.63
B
B
B
O3'
P
OP1
DC
DT
DT
15
16
16
Y
1
26.28
1.20
110.70
136.98
B
B
B
O5'
P
OP2
DT
DT
DT
16
16
16
N
1
-13.75
1.60
120.90
107.15
B
B
B
P
O5'
C5'
DT
DT
DT
16
16
16
N
1
2.77
0.30
108.30
111.07
B
B
B
O4'
C1'
N1
DT
DT
DT
17
17
17
N
1
-3.72
0.60
122.90
119.18
B
B
B
C6
C5
C7
DT
DT
DT
17
17
17
N
1
2.26
0.30
108.30
110.56
B
B
B
O4'
C1'
N9
DG
DG
DG
18
18
18
N
1
4.60
0.50
113.10
117.70
B
B
B
N7
C8
N9
DG
DG
DG
18
18
18
N
1
-2.96
0.40
106.40
103.44
B
B
B
C8
N9
C4
DG
DG
DG
18
18
18
N
1
2.92
0.30
108.30
111.22
B
B
B
O4'
C1'
N1
DT
DT
DT
19
19
19
N
1
2.32
0.30
108.30
110.62
B
B
B
O4'
C1'
N1
DC
DC
DC
20
20
20
N
1
2.53
0.30
108.30
110.83
B
B
B
O4'
C1'
N1
DC
DC
DC
21
21
21
N
1
2.70
0.30
108.30
111.00
B
B
B
O4'
C1'
N9
DG
DG
DG
22
22
22
N
1
4.40
0.50
113.10
117.50
B
B
B
N7
C8
N9
DG
DG
DG
22
22
22
N
1
-2.61
0.40
106.40
103.79
B
B
B
C8
N9
C4
DG
DG
DG
22
22
22
N
model building
X-PLOR
3.1
refinement
X-PLOR
3.1
phasing
X-PLOR
3.1
THE SOLUTION STRUCTURE OF AN 11 BASE-PAIR OLIGONUCLEOTIDE DUPLEX CODING FOR AMINO ACIDS 60-62 OF THE PRODUCT OF THE N-RAS PROTOONCOGENE, NMR, MINIMIZED AVERAGE STRUCTURE
1
N
N
2
N
N
hydrog
WATSON-CRICK
A
DC
1
A
N3
DC
1
1_555
B
DG
22
B
N1
DG
11
1_555
hydrog
WATSON-CRICK
A
DC
1
A
N4
DC
1
1_555
B
DG
22
B
O6
DG
11
1_555
hydrog
WATSON-CRICK
A
DC
1
A
O2
DC
1
1_555
B
DG
22
B
N2
DG
11
1_555
hydrog
WATSON-CRICK
A
DG
2
A
N1
DG
2
1_555
B
DC
21
B
N3
DC
10
1_555
hydrog
WATSON-CRICK
A
DG
2
A
N2
DG
2
1_555
B
DC
21
B
O2
DC
10
1_555
hydrog
WATSON-CRICK
A
DG
2
A
O6
DG
2
1_555
B
DC
21
B
N4
DC
10
1_555
hydrog
WATSON-CRICK
A
DG
3
A
N1
DG
3
1_555
B
DC
20
B
N3
DC
9
1_555
hydrog
WATSON-CRICK
A
DG
3
A
N2
DG
3
1_555
B
DC
20
B
O2
DC
9
1_555
hydrog
WATSON-CRICK
A
DG
3
A
O6
DG
3
1_555
B
DC
20
B
N4
DC
9
1_555
hydrog
WATSON-CRICK
A
DA
4
A
N1
DA
4
1_555
B
DT
19
B
N3
DT
8
1_555
hydrog
WATSON-CRICK
A
DA
4
A
N6
DA
4
1_555
B
DT
19
B
O4
DT
8
1_555
hydrog
WATSON-CRICK
A
DC
5
A
N3
DC
5
1_555
B
DG
18
B
N1
DG
7
1_555
hydrog
WATSON-CRICK
A
DC
5
A
N4
DC
5
1_555
B
DG
18
B
O6
DG
7
1_555
hydrog
WATSON-CRICK
A
DC
5
A
O2
DC
5
1_555
B
DG
18
B
N2
DG
7
1_555
hydrog
WATSON-CRICK
A
DA
6
A
N1
DA
6
1_555
B
DT
17
B
N3
DT
6
1_555
hydrog
WATSON-CRICK
A
DA
6
A
N6
DA
6
1_555
B
DT
17
B
O4
DT
6
1_555
hydrog
WATSON-CRICK
A
DA
7
A
N1
DA
7
1_555
B
DT
16
B
N3
DT
5
1_555
hydrog
WATSON-CRICK
A
DA
7
A
N6
DA
7
1_555
B
DT
16
B
O4
DT
5
1_555
hydrog
WATSON-CRICK
A
DG
8
A
N1
DG
8
1_555
B
DC
15
B
N3
DC
4
1_555
hydrog
WATSON-CRICK
A
DG
8
A
N2
DG
8
1_555
B
DC
15
B
O2
DC
4
1_555
hydrog
WATSON-CRICK
A
DG
8
A
O6
DG
8
1_555
B
DC
15
B
N4
DC
4
1_555
hydrog
WATSON-CRICK
A
DA
9
A
N1
DA
9
1_555
B
DT
14
B
N3
DT
3
1_555
hydrog
WATSON-CRICK
A
DA
9
A
N6
DA
9
1_555
B
DT
14
B
O4
DT
3
1_555
hydrog
WATSON-CRICK
A
DA
10
A
N1
DA
10
1_555
B
DT
13
B
N3
DT
2
1_555
hydrog
WATSON-CRICK
A
DA
10
A
N6
DA
10
1_555
B
DT
13
B
O4
DT
2
1_555
hydrog
WATSON-CRICK
A
DG
11
A
N1
DG
11
1_555
B
DC
12
B
N3
DC
1
1_555
hydrog
WATSON-CRICK
A
DG
11
A
N2
DG
11
1_555
B
DC
12
B
O2
DC
1
1_555
hydrog
WATSON-CRICK
A
DG
11
A
O6
DG
11
1_555
B
DC
12
B
N4
DC
1
1_555
DNA
DNA DUPLEX, B-DNA, HUMAN N-RAS GENE, CODON 61 SEQUENCE, DEOXYRIBONUCLEIC ACID, DNA
1AGH
PDB
1
1AGH
1AGH
PDB
2
1AGH
1
11
1AGH
1
11
1AGH
A
1
1
11
12
22
1AGH
12
22
1AGH
B
2
1
11
1
P 1