1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 Feng, B. Stone, M.P. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 1 90.00 90.00 90.00 1.000 1.000 1.000 C10 H14 N5 O6 P 331.222 y 2'-DEOXYADENOSINE-5'-MONOPHOSPHATE DNA linking C9 H14 N3 O7 P 307.197 y 2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE DNA linking C10 H14 N5 O7 P 347.221 y 2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE DNA linking C10 H15 N2 O8 P 322.208 y THYMIDINE-5'-MONOPHOSPHATE DNA linking US Chem.Res.Toxicol. CRTOEC 2140 0893-228X 8 821 832 10.1021/tx00048a002 7492731 Solution structure of an oligodeoxynucleotide containing the human n-ras codon 61 sequence refined from 1H NMR using molecular dynamics restrained by nuclear Overhauser effects. 1995 10.2210/pdb1agh/pdb pdb_00001agh 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 HUMAN N-RAS PROTOONCOGENE 3416.263 DNA (5'-D(*CP*GP*GP*AP*CP*AP*AP*GP*AP*AP*G)-3') 1 syn polymer HUMAN N-RAS PROTOONCOGENE 3291.145 DNA (5'-D(*CP*TP*TP*CP*TP*TP*GP*TP*CP*CP*G)-3') 1 syn polymer no no (DC)(DG)(DG)(DA)(DC)(DA)(DA)(DG)(DA)(DA)(DG) CGGACAAGAAG A polydeoxyribonucleotide no no (DC)(DT)(DT)(DC)(DT)(DT)(DG)(DT)(DC)(DC)(DG) CTTCTTGTCCG B polydeoxyribonucleotide n n n n n n n n n n n n n n n n n n n n n n -19.530 1 19 A 1 B 22 -0.095 A_DC1:DG22_B 1 5.556 0.756 0.477 -0.329 3.594 1 19 A 2 B 21 -0.945 A_DG2:DC21_B 2 -6.030 -0.662 0.188 -0.343 4.570 1 19 A 3 B 20 -2.137 A_DG3:DC20_B 3 -13.583 -0.541 -0.011 -0.353 0.975 1 20 A 4 B 19 -3.889 A_DA4:DT19_B 4 -17.529 0.355 -0.162 -0.052 3.464 1 19 A 5 B 18 -0.449 A_DC5:DG18_B 5 -16.068 0.688 -0.242 -0.402 -6.292 1 20 A 6 B 17 3.044 A_DA6:DT17_B 6 -15.656 0.207 -0.190 -0.128 8.021 1 20 A 7 B 16 -4.972 A_DA7:DT16_B 7 -12.160 0.612 -0.031 -0.129 6.910 1 19 A 8 B 15 -1.315 A_DG8:DC15_B 8 -12.156 -0.639 -0.018 -0.373 10.548 1 20 A 9 B 14 -4.868 A_DA9:DT14_B 9 -22.684 0.358 -0.176 -0.157 10.112 1 20 A 10 B 13 0.632 A_DA10:DT13_B 10 -12.932 0.318 -0.079 -0.163 27.069 1 19 A 11 B 12 -2.478 A_DG11:DC12_B 11 -0.369 -0.648 0.616 -0.222 2.635 30.269 A A 1 2 -5.949 B B 22 21 2.665 -3.095 -0.147 -0.140 AA_DC1DG2:DC21DG22_BB 1 3.295 -6.333 29.937 0.242 0.825 3.293 35.307 A A 2 3 0.598 B B 21 20 3.292 0.363 -0.126 0.062 AA_DG2DG3:DC20DC21_BB 2 0.076 -0.125 35.305 0.049 0.218 3.413 42.730 A A 3 4 -4.055 B B 20 19 3.437 -2.952 0.014 0.258 AA_DG3DA4:DT19DC20_BB 3 0.042 -0.058 42.632 0.664 -0.015 3.176 37.621 A A 4 5 -8.561 B B 19 18 3.207 -5.500 0.253 0.052 AA_DA4DC5:DG18DT19_BB 4 1.944 -3.025 37.182 0.783 -0.144 3.562 39.449 A A 5 6 12.752 B B 18 17 3.564 8.545 0.230 0.372 AA_DC5DA6:DT17DG18_BB 5 -0.147 0.219 38.548 -0.561 -0.360 2.867 37.100 A A 6 7 -3.672 B B 17 16 2.875 -2.335 -0.678 0.392 AA_DA6DA7:DT16DT17_BB 6 -1.273 2.002 37.008 0.890 0.916 3.279 31.506 A A 7 8 1.346 B B 16 15 3.294 0.731 0.246 -0.144 AA_DA7DG8:DC15DT16_BB 7 -1.124 2.071 31.478 -0.402 -0.664 3.076 43.073 A A 8 9 0.448 B B 15 14 3.096 0.329 -0.402 0.339 AA_DG8DA9:DT14DC15_BB 8 2.177 -2.966 43.020 0.431 0.750 3.098 33.389 A A 9 10 6.085 B B 14 13 3.128 3.489 0.370 0.029 AA_DA9DA10:DT13DT14_BB 9 -1.294 2.257 33.187 -0.501 -0.848 2.794 34.381 A A 10 11 8.400 B B 13 12 2.687 4.916 -0.902 0.061 AA_DA10DG11:DC12DT13_BB 10 -6.989 11.941 33.333 -0.551 0.596 database_2 pdbx_database_status pdbx_nmr_software pdbx_struct_assembly pdbx_struct_oper_list repository Initial release Version format compliance Version format compliance Data collection Database references Derived calculations Other 1 0 1997-09-17 1 1 2008-03-24 1 2 2011-07-13 1 3 2022-02-16 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_database_status.process_site _pdbx_nmr_software.name Y BNL 1997-03-25 REL THIS STRUCTURE PROVIDED THE BEST-FIT FOR THE NOE DATA BASED ON THE RELAXATION MATRIX ANALYSIS USING CORMA. 1 1 NOESY 2QF-COSY TOCSY 6.9 293 K REFINEMENT DETAILS CAN BE FOUND IN THE JRNL CITATION ABOVE. NOE-RESTRAINED MOLECULAR DYNAMICS/SIMULATED ANNEALING BRUNGER refinement X-PLOR 3.1 structure solution Felix structure solution X-PLOR structure solution MARDIGRAS structure solution CORMA 500 Bruker AMX500 C 1 n 1 DC 1 A G 2 n 2 DG 2 A G 3 n 3 DG 3 A A 4 n 4 DA 4 A C 5 n 5 DC 5 A A 6 n 6 DA 6 A A 7 n 7 DA 7 A G 8 n 8 DG 8 A A 9 n 9 DA 9 A A 10 n 10 DA 10 A G 11 n 11 DG 11 A C 12 n 1 DC 12 B T 13 n 2 DT 13 B T 14 n 3 DT 14 B C 15 n 4 DC 15 B T 16 n 5 DT 16 B T 17 n 6 DT 17 B G 18 n 7 DG 18 B T 19 n 8 DT 19 B C 20 n 9 DC 20 B C 21 n 10 DC 21 B G 22 n 11 DG 22 B author_defined_assembly 2 dimeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 1 2.87 0.30 108.30 111.17 A A A O4' C1' N1 DC DC DC 1 1 1 N 1 2.36 0.30 108.30 110.66 A A A O4' C1' N9 DG DG DG 2 2 2 N 1 4.55 0.50 113.10 117.65 A A A N7 C8 N9 DG DG DG 2 2 2 N 1 -3.59 0.40 106.40 102.81 A A A C8 N9 C4 DG DG DG 2 2 2 N 1 4.30 0.50 113.10 117.40 A A A N7 C8 N9 DG DG DG 3 3 3 N 1 -2.46 0.40 106.40 103.94 A A A C8 N9 C4 DG DG DG 3 3 3 N 1 2.85 0.30 108.30 111.15 A A A O4' C1' N9 DA DA DA 4 4 4 N 1 3.62 0.50 113.80 117.42 A A A N7 C8 N9 DA DA DA 4 4 4 N 1 2.57 0.30 108.30 110.87 A A A O4' C1' N1 DC DC DC 5 5 5 N 1 2.76 0.30 108.30 111.06 A A A O4' C1' N9 DA DA DA 6 6 6 N 1 3.71 0.50 113.80 117.51 A A A N7 C8 N9 DA DA DA 6 6 6 N 1 2.87 0.30 108.30 111.17 A A A O4' C1' N9 DA DA DA 7 7 7 N 1 3.55 0.50 113.80 117.35 A A A N7 C8 N9 DA DA DA 7 7 7 N 1 3.84 0.30 108.30 112.14 A A A O4' C1' N9 DG DG DG 8 8 8 N 1 4.50 0.50 113.10 117.60 A A A N7 C8 N9 DG DG DG 8 8 8 N 1 -2.85 0.40 106.40 103.55 A A A C8 N9 C4 DG DG DG 8 8 8 N 1 -37.02 1.90 104.00 66.98 A A A O3' P O5' DG DA DA 8 9 9 Y 1 -28.43 2.20 105.20 76.77 A A A O3' P OP2 DG DA DA 8 9 9 Y 1 18.40 1.10 110.50 128.90 A A A O3' P OP1 DG DA DA 8 9 9 Y 1 -22.27 1.50 119.60 97.33 A A A OP1 P OP2 DA DA DA 9 9 9 N 1 -22.45 0.90 105.70 83.25 A A A O5' P OP1 DA DA DA 9 9 9 N 1 21.59 1.20 110.70 132.29 A A A O5' P OP2 DA DA DA 9 9 9 N 1 2.00 0.30 108.30 110.30 A A A O4' C1' N9 DA DA DA 9 9 9 N 1 3.88 0.50 113.80 117.68 A A A N7 C8 N9 DA DA DA 9 9 9 N 1 2.92 0.30 108.30 111.22 A A A O4' C1' N9 DA DA DA 10 10 10 N 1 3.82 0.50 113.80 117.62 A A A N7 C8 N9 DA DA DA 10 10 10 N 1 -2.47 0.40 105.80 103.33 A A A C8 N9 C4 DA DA DA 10 10 10 N 1 2.36 0.30 108.30 110.66 A A A O4' C1' N9 DG DG DG 11 11 11 N 1 4.53 0.50 113.10 117.63 A A A N7 C8 N9 DG DG DG 11 11 11 N 1 -2.69 0.40 106.40 103.71 A A A C8 N9 C4 DG DG DG 11 11 11 N 1 2.38 0.30 108.30 110.68 B B B O4' C1' N1 DC DC DC 12 12 12 N 1 2.69 0.30 108.30 110.99 B B B O4' C1' N1 DT DT DT 13 13 13 N 1 3.07 0.30 108.30 111.37 B B B O4' C1' N1 DT DT DT 14 14 14 N 1 3.38 0.30 108.30 111.68 B B B O4' C1' N1 DC DC DC 15 15 15 N 1 -35.03 1.90 104.00 68.97 B B B O3' P O5' DC DT DT 15 16 16 Y 1 -29.09 2.20 105.20 76.11 B B B O3' P OP2 DC DT DT 15 16 16 Y 1 7.13 1.10 110.50 117.63 B B B O3' P OP1 DC DT DT 15 16 16 Y 1 26.28 1.20 110.70 136.98 B B B O5' P OP2 DT DT DT 16 16 16 N 1 -13.75 1.60 120.90 107.15 B B B P O5' C5' DT DT DT 16 16 16 N 1 2.77 0.30 108.30 111.07 B B B O4' C1' N1 DT DT DT 17 17 17 N 1 -3.72 0.60 122.90 119.18 B B B C6 C5 C7 DT DT DT 17 17 17 N 1 2.26 0.30 108.30 110.56 B B B O4' C1' N9 DG DG DG 18 18 18 N 1 4.60 0.50 113.10 117.70 B B B N7 C8 N9 DG DG DG 18 18 18 N 1 -2.96 0.40 106.40 103.44 B B B C8 N9 C4 DG DG DG 18 18 18 N 1 2.92 0.30 108.30 111.22 B B B O4' C1' N1 DT DT DT 19 19 19 N 1 2.32 0.30 108.30 110.62 B B B O4' C1' N1 DC DC DC 20 20 20 N 1 2.53 0.30 108.30 110.83 B B B O4' C1' N1 DC DC DC 21 21 21 N 1 2.70 0.30 108.30 111.00 B B B O4' C1' N9 DG DG DG 22 22 22 N 1 4.40 0.50 113.10 117.50 B B B N7 C8 N9 DG DG DG 22 22 22 N 1 -2.61 0.40 106.40 103.79 B B B C8 N9 C4 DG DG DG 22 22 22 N model building X-PLOR 3.1 refinement X-PLOR 3.1 phasing X-PLOR 3.1 THE SOLUTION STRUCTURE OF AN 11 BASE-PAIR OLIGONUCLEOTIDE DUPLEX CODING FOR AMINO ACIDS 60-62 OF THE PRODUCT OF THE N-RAS PROTOONCOGENE, NMR, MINIMIZED AVERAGE STRUCTURE 1 N N 2 N N hydrog WATSON-CRICK A DC 1 A N3 DC 1 1_555 B DG 22 B N1 DG 11 1_555 hydrog WATSON-CRICK A DC 1 A N4 DC 1 1_555 B DG 22 B O6 DG 11 1_555 hydrog WATSON-CRICK A DC 1 A O2 DC 1 1_555 B DG 22 B N2 DG 11 1_555 hydrog WATSON-CRICK A DG 2 A N1 DG 2 1_555 B DC 21 B N3 DC 10 1_555 hydrog WATSON-CRICK A DG 2 A N2 DG 2 1_555 B DC 21 B O2 DC 10 1_555 hydrog WATSON-CRICK A DG 2 A O6 DG 2 1_555 B DC 21 B N4 DC 10 1_555 hydrog WATSON-CRICK A DG 3 A N1 DG 3 1_555 B DC 20 B N3 DC 9 1_555 hydrog WATSON-CRICK A DG 3 A N2 DG 3 1_555 B DC 20 B O2 DC 9 1_555 hydrog WATSON-CRICK A DG 3 A O6 DG 3 1_555 B DC 20 B N4 DC 9 1_555 hydrog WATSON-CRICK A DA 4 A N1 DA 4 1_555 B DT 19 B N3 DT 8 1_555 hydrog WATSON-CRICK A DA 4 A N6 DA 4 1_555 B DT 19 B O4 DT 8 1_555 hydrog WATSON-CRICK A DC 5 A N3 DC 5 1_555 B DG 18 B N1 DG 7 1_555 hydrog WATSON-CRICK A DC 5 A N4 DC 5 1_555 B DG 18 B O6 DG 7 1_555 hydrog WATSON-CRICK A DC 5 A O2 DC 5 1_555 B DG 18 B N2 DG 7 1_555 hydrog WATSON-CRICK A DA 6 A N1 DA 6 1_555 B DT 17 B N3 DT 6 1_555 hydrog WATSON-CRICK A DA 6 A N6 DA 6 1_555 B DT 17 B O4 DT 6 1_555 hydrog WATSON-CRICK A DA 7 A N1 DA 7 1_555 B DT 16 B N3 DT 5 1_555 hydrog WATSON-CRICK A DA 7 A N6 DA 7 1_555 B DT 16 B O4 DT 5 1_555 hydrog WATSON-CRICK A DG 8 A N1 DG 8 1_555 B DC 15 B N3 DC 4 1_555 hydrog WATSON-CRICK A DG 8 A N2 DG 8 1_555 B DC 15 B O2 DC 4 1_555 hydrog WATSON-CRICK A DG 8 A O6 DG 8 1_555 B DC 15 B N4 DC 4 1_555 hydrog WATSON-CRICK A DA 9 A N1 DA 9 1_555 B DT 14 B N3 DT 3 1_555 hydrog WATSON-CRICK A DA 9 A N6 DA 9 1_555 B DT 14 B O4 DT 3 1_555 hydrog WATSON-CRICK A DA 10 A N1 DA 10 1_555 B DT 13 B N3 DT 2 1_555 hydrog WATSON-CRICK A DA 10 A N6 DA 10 1_555 B DT 13 B O4 DT 2 1_555 hydrog WATSON-CRICK A DG 11 A N1 DG 11 1_555 B DC 12 B N3 DC 1 1_555 hydrog WATSON-CRICK A DG 11 A N2 DG 11 1_555 B DC 12 B O2 DC 1 1_555 hydrog WATSON-CRICK A DG 11 A O6 DG 11 1_555 B DC 12 B N4 DC 1 1_555 DNA DNA DUPLEX, B-DNA, HUMAN N-RAS GENE, CODON 61 SEQUENCE, DEOXYRIBONUCLEIC ACID, DNA 1AGH PDB 1 1AGH 1AGH PDB 2 1AGH 1 11 1AGH 1 11 1AGH A 1 1 11 12 22 1AGH 12 22 1AGH B 2 1 11 1 P 1