1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 Zegar, I.S. Stone, M.P. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 1 90.00 90.00 90.00 1.000 1.000 1.000 C10 H14 N5 O6 P 331.222 y 2'-DEOXYADENOSINE-5'-MONOPHOSPHATE DNA linking C9 H14 N3 O7 P 307.197 y 2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE DNA linking C10 H14 N5 O7 P 347.221 y 2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE DNA linking C10 H15 N2 O8 P 322.208 y THYMIDINE-5'-MONOPHOSPHATE DNA linking C30 H28 N5 O9 P 633.545 n N-((-)-(7S,8R,9S,10R)[7,8,9-TRIHYDROXY-7,8,9,10-TETRA HYDROBENZO[A]PYREN-10-YL])-2'-DEOXY-ADENOSINE-5'-MONOPHOSPHATE DNA linking US Biochemistry BICHAW 0033 0006-2960 35 6212 6224 10.1021/bi9524732 8639561 Adduction of the human N-ras codon 61 sequence with (-)-(7S,8R,9R,10S)-7,8-dihydroxy-9,10-epoxy-7,8,9,10-tetrahydrobenzo[a] pyrene: structural refinement of the intercalated SRSR(61,2) (-)-(7S,8R,9S,1 0R)-N6-[10-(7,8,9,10- tetrahydrobenzo[a]pyrenyl)]-2'-deoxyadenosyl adduct from 1H NMR 1996 US Chem.Res.Toxicol. CRTOEC 2140 0893-228X 8 821 Solution Structure of an Oligodeoxynucleotide Containing the Human N-Ras Codon 61 Sequence Refined from 1H NMR Using Molecular Dynamics Restrained by Nuclear Overhauser Effects 1995 10.2210/pdb1agu/pdb pdb_00001agu 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 C10R-BPDE-N6-ADENINE ADDUCT 3718.586 DNA (5'-D(*CP*GP*GP*AP*CP*EP*AP*GP*AP*AP*G)-3') 1 syn polymer C10R-BPDE-N6-ADENINE ADDUCT 3291.145 DNA (5'-D(*CP*TP*TP*CP*TP*TP*GP*TP*CP*CP*G)-3') 1 syn polymer no yes (DC)(DG)(DG)(DA)(DC)(E)(DA)(DG)(DA)(DA)(DG) CGGACAAGAAG A polydeoxyribonucleotide no no (DC)(DT)(DT)(DC)(DT)(DT)(DG)(DT)(DC)(DC)(DG) CTTCTTGTCCG B polydeoxyribonucleotide n n n n n n n n n n n n n n n n n n n n n n 7.334 1 19 A 1 B 22 -0.411 A_DC1:DG22_B 1 -8.328 0.622 -0.228 -0.361 4.345 1 19 A 2 B 21 -3.417 A_DG2:DC21_B 2 -4.462 -0.237 -0.021 -0.158 0.000 1 19 A 3 B 20 2.017 A_DG3:DC20_B 3 -9.831 -0.704 -0.168 -0.206 12.594 1 20 A 4 B 19 8.541 A_DA4:DT19_B 4 -10.155 0.132 -0.250 -0.236 29.395 1 19 A 5 B 18 24.528 A_DC5:DG18_B 5 -32.978 1.338 -1.025 -0.370 -26.377 1 20 A 6 B 17 -0.756 A_E6:DT17_B 6 -1.028 -1.189 -0.988 -0.318 14.852 1 20 A 7 B 16 -11.179 A_DA7:DT16_B 7 -1.846 0.480 -0.207 0.036 9.185 1 19 A 8 B 15 0.119 A_DG8:DC15_B 8 -2.221 -0.560 -0.037 -0.216 11.139 1 20 A 9 B 14 -3.737 A_DA9:DT14_B 9 -14.126 0.097 -0.142 -0.170 15.400 1 20 A 10 B 13 -5.693 A_DA10:DT13_B 10 -19.278 0.342 -0.187 -0.057 11.725 1 19 A 11 B 12 0.848 A_DG11:DC12_B 11 -5.314 -0.649 0.254 -0.316 2.174 29.907 A A 1 2 31.126 B B 22 21 3.081 15.329 -0.722 -1.000 AA_DC1DG2:DC21DG22_BB 1 -0.705 1.433 25.747 -4.691 1.272 3.148 33.484 A A 2 3 16.991 B B 21 20 3.334 9.656 0.533 -0.239 AA_DG2DG3:DC20DC21_BB 2 1.114 -1.961 32.081 -2.027 -0.739 3.021 40.972 A A 3 4 -9.618 B B 20 19 3.112 -6.704 0.301 0.279 AA_DG3DA4:DT19DC20_BB 3 -1.106 1.586 40.428 1.089 -0.544 2.826 39.743 A A 4 5 2.821 B B 19 18 2.837 1.894 0.350 0.045 AA_DA4DC5:DG18DT19_BB 4 11.039 -16.443 38.193 -0.129 0.620 2.300 34.761 A A 6 7 -8.842 B B 17 16 2.304 -5.263 -0.725 -0.284 AA_E6DA7:DT16DT17_BB 5 1.013 -1.702 34.358 0.093 1.322 3.298 27.233 A A 7 8 5.327 B B 16 15 3.400 2.504 0.953 -0.633 AA_DA7DG8:DC15DT16_BB 6 -0.858 1.824 27.107 -1.988 -2.244 3.403 43.257 A A 8 9 -11.483 B B 15 14 3.433 -8.416 -0.146 -0.163 AA_DG8DA9:DT14DC15_BB 7 0.224 -0.305 42.469 0.646 0.221 3.179 37.474 A A 9 10 -17.120 B B 14 13 3.346 -10.822 -0.414 -0.162 AA_DA9DA10:DT13DT14_BB 8 4.854 -7.678 35.612 1.202 1.297 2.882 30.274 A A 10 11 25.857 B B 13 12 3.256 13.026 0.158 -0.014 AA_DA10DG11:DC12DT13_BB 9 -4.576 9.083 27.008 -2.646 -1.223 database_2 entity_poly pdbx_database_status pdbx_nmr_software pdbx_struct_assembly pdbx_struct_oper_list struct_conn repository Initial release Version format compliance Version format compliance Data collection Database references Derived calculations Other Polymer sequence 1 0 1997-08-20 1 1 2008-03-24 1 2 2011-07-13 2 0 2022-02-16 _database_2.pdbx_DOI _database_2.pdbx_database_accession _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _pdbx_database_status.process_site _pdbx_nmr_software.name _struct_conn.pdbx_leaving_atom_flag _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id Y BNL 1997-03-25 REL THIS STRUCTURE PROVIDED THE BEST-FIT FOR THE NOE DATA BASED ON THE RELAXATION MATRIX ANALYSIS USING CORMA. 1 1 NOESY 2QF-COSY AND TOCSY : NOESY 2QF-COSY AND H 6.9 293 K REFINEMENT DETAILS CAN BE FOUND IN THE JRNL CITATION ABOVE. NOE-RESTRAINED MOLECULAR DYNAMICS/SIMULATED ANNEALING BRUNGER refinement X-PLOR 3.1 structure solution Felix structure solution X-PLOR structure solution MARDIGRAS structure solution CORMA 500 Bruker AMX500 C 1 n 1 DC 1 A G 2 n 2 DG 2 A G 3 n 3 DG 3 A A 4 n 4 DA 4 A C 5 n 5 DC 5 A E 6 n 6 E 6 A A 7 n 7 DA 7 A G 8 n 8 DG 8 A A 9 n 9 DA 9 A A 10 n 10 DA 10 A G 11 n 11 DG 11 A C 12 n 1 DC 12 B T 13 n 2 DT 13 B T 14 n 3 DT 14 B C 15 n 4 DC 15 B T 16 n 5 DT 16 B T 17 n 6 DT 17 B G 18 n 7 DG 18 B T 19 n 8 DT 19 B C 20 n 9 DC 20 B C 21 n 10 DC 21 B G 22 n 11 DG 22 B author_defined_assembly 2 dimeric A E 6 A E 6 DA 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 1 B B O3' P DT DG 17 18 1.30 1 2.97 0.30 108.30 111.27 A A A O4' C1' N1 DC DC DC 1 1 1 N 1 3.28 0.30 108.30 111.58 A A A O4' C1' N9 DG DG DG 2 2 2 N 1 4.55 0.50 113.10 117.65 A A A N7 C8 N9 DG DG DG 2 2 2 N 1 -2.56 0.40 106.40 103.84 A A A C8 N9 C4 DG DG DG 2 2 2 N 1 2.78 0.30 108.30 111.08 A A A O4' C1' N9 DG DG DG 3 3 3 N 1 4.51 0.50 113.10 117.61 A A A N7 C8 N9 DG DG DG 3 3 3 N 1 -2.64 0.40 106.40 103.76 A A A C8 N9 C4 DG DG DG 3 3 3 N 1 2.27 0.30 108.30 110.57 A A A O4' C1' N9 DA DA DA 4 4 4 N 1 3.80 0.50 113.80 117.60 A A A N7 C8 N9 DA DA DA 4 4 4 N 1 2.02 0.30 108.30 110.32 A A A O4' C1' N1 DC DC DC 5 5 5 N 1 3.14 0.30 108.30 111.44 A A A O4' C1' N9 DA DA DA 7 7 7 N 1 3.81 0.50 113.80 117.61 A A A N7 C8 N9 DA DA DA 7 7 7 N 1 3.37 0.30 108.30 111.67 A A A O4' C1' N9 DG DG DG 8 8 8 N 1 4.46 0.50 113.10 117.56 A A A N7 C8 N9 DG DG DG 8 8 8 N 1 -2.66 0.40 106.40 103.74 A A A C8 N9 C4 DG DG DG 8 8 8 N 1 2.20 0.30 108.30 110.50 A A A O4' C1' N9 DA DA DA 9 9 9 N 1 3.86 0.50 113.80 117.66 A A A N7 C8 N9 DA DA DA 9 9 9 N 1 2.49 0.30 108.30 110.79 A A A O4' C1' N9 DA DA DA 10 10 10 N 1 3.58 0.50 113.80 117.38 A A A N7 C8 N9 DA DA DA 10 10 10 N 1 2.77 0.30 108.30 111.07 A A A O4' C1' N9 DG DG DG 11 11 11 N 1 3.97 0.50 113.10 117.07 A A A N7 C8 N9 DG DG DG 11 11 11 N 1 2.44 0.30 108.30 110.74 B B B O4' C1' N1 DC DC DC 12 12 12 N 1 2.82 0.30 108.30 111.12 B B B O4' C1' N1 DT DT DT 13 13 13 N 1 3.66 0.30 108.30 111.96 B B B O4' C1' N1 DT DT DT 14 14 14 N 1 2.04 0.30 108.30 110.34 B B B O4' C1' N1 DC DC DC 15 15 15 N 1 3.61 0.30 108.30 111.91 B B B O4' C1' N1 DT DT DT 16 16 16 N 1 3.80 0.30 108.30 112.10 B B B O4' C1' N1 DT DT DT 17 17 17 N 1 11.91 1.20 119.70 131.61 B B B C3' O3' P DT DT DG 17 17 18 Y 1 14.49 1.90 104.00 118.49 B B B O3' P O5' DT DG DG 17 18 18 Y 1 3.38 0.30 108.30 111.68 B B B O4' C1' N9 DG DG DG 18 18 18 N 1 4.41 0.50 113.10 117.51 B B B N7 C8 N9 DG DG DG 18 18 18 N 1 16.12 2.50 111.00 127.12 B B B O5' C5' C4' DT DT DT 19 19 19 N 1 2.71 0.30 108.30 111.01 B B B O4' C1' N1 DT DT DT 19 19 19 N 1 2.65 0.30 108.30 110.95 B B B O4' C1' N1 DC DC DC 20 20 20 N 1 2.93 0.30 108.30 111.23 B B B O4' C1' N1 DC DC DC 21 21 21 N 1 3.91 0.30 108.30 112.21 B B B O4' C1' N9 DG DG DG 22 22 22 N 1 3.94 0.50 113.10 117.04 B B B N7 C8 N9 DG DG DG 22 22 22 N 1 A A O5' C5' DG DG 2 2 -0.207 0.025 1.418 1.211 N 1 A A N7 C8 DG DG 11 11 -0.039 0.006 1.305 1.266 N 1 B B O3' P DT DG 17 18 -0.306 0.012 1.607 1.301 Y 1 B B P OP1 DG DG 18 18 -0.445 0.017 1.485 1.040 N 1 B B P OP2 DG DG 18 18 -0.431 0.017 1.485 1.054 N 1 B B O5' C5' DT DT 19 19 -0.219 0.025 1.418 1.199 N 1 B B N7 C8 DG DG 22 22 -0.041 0.006 1.305 1.264 N model building X-PLOR 3.1 refinement X-PLOR 3.1 phasing X-PLOR 3.1 THE SOLUTION NMR STRUCTURE OF THE C10R ADDUCT OF BENZO[A]PYRENE-DIOL-EPOXIDE AT THE N6 POSITION OF ADENINE OF AN 11 BASE-PAIR OLIGONUCLEOTIDE SEQUENCE CODING FOR AMINO ACIDS 60-62 OF THE PRODUCT OF THE N-RAS PROTOONCOGENE, MINIMIZED AVERAGE STRUCTURE 1 N N 2 N N covale 1.607 both A DC 5 A O3' DC 5 1_555 A E 6 A P E 6 1_555 covale 1.613 both A E 6 A O3' E 6 1_555 A DA 7 A P DA 7 1_555 hydrog WATSON-CRICK A DC 1 A N3 DC 1 1_555 B DG 22 B N1 DG 11 1_555 hydrog WATSON-CRICK A DC 1 A N4 DC 1 1_555 B DG 22 B O6 DG 11 1_555 hydrog WATSON-CRICK A DC 1 A O2 DC 1 1_555 B DG 22 B N2 DG 11 1_555 hydrog WATSON-CRICK A DG 2 A N1 DG 2 1_555 B DC 21 B N3 DC 10 1_555 hydrog WATSON-CRICK A DG 2 A N2 DG 2 1_555 B DC 21 B O2 DC 10 1_555 hydrog WATSON-CRICK A DG 2 A O6 DG 2 1_555 B DC 21 B N4 DC 10 1_555 hydrog WATSON-CRICK A DG 3 A N1 DG 3 1_555 B DC 20 B N3 DC 9 1_555 hydrog WATSON-CRICK A DG 3 A N2 DG 3 1_555 B DC 20 B O2 DC 9 1_555 hydrog WATSON-CRICK A DG 3 A O6 DG 3 1_555 B DC 20 B N4 DC 9 1_555 hydrog WATSON-CRICK A DA 4 A N1 DA 4 1_555 B DT 19 B N3 DT 8 1_555 hydrog WATSON-CRICK A DA 4 A N6 DA 4 1_555 B DT 19 B O4 DT 8 1_555 hydrog WATSON-CRICK A DC 5 A N3 DC 5 1_555 B DG 18 B N1 DG 7 1_555 hydrog WATSON-CRICK A DC 5 A N4 DC 5 1_555 B DG 18 B O6 DG 7 1_555 hydrog WATSON-CRICK A DC 5 A O2 DC 5 1_555 B DG 18 B N2 DG 7 1_555 hydrog WATSON-CRICK A E 6 A N1 E 6 1_555 B DT 17 B N3 DT 6 1_555 hydrog WATSON-CRICK A E 6 A N6 E 6 1_555 B DT 17 B O4 DT 6 1_555 hydrog WATSON-CRICK A DA 7 A N1 DA 7 1_555 B DT 16 B N3 DT 5 1_555 hydrog WATSON-CRICK A DA 7 A N6 DA 7 1_555 B DT 16 B O4 DT 5 1_555 hydrog DA-DT PAIR A DA 7 A N1 DA 7 1_555 B DT 17 B N3 DT 6 1_555 hydrog WATSON-CRICK A DG 8 A N1 DG 8 1_555 B DC 15 B N3 DC 4 1_555 hydrog WATSON-CRICK A DG 8 A N2 DG 8 1_555 B DC 15 B O2 DC 4 1_555 hydrog WATSON-CRICK A DG 8 A O6 DG 8 1_555 B DC 15 B N4 DC 4 1_555 hydrog WATSON-CRICK A DA 9 A N1 DA 9 1_555 B DT 14 B N3 DT 3 1_555 hydrog WATSON-CRICK A DA 9 A N6 DA 9 1_555 B DT 14 B O4 DT 3 1_555 hydrog WATSON-CRICK A DA 10 A N1 DA 10 1_555 B DT 13 B N3 DT 2 1_555 hydrog WATSON-CRICK A DA 10 A N6 DA 10 1_555 B DT 13 B O4 DT 2 1_555 hydrog WATSON-CRICK A DG 11 A N1 DG 11 1_555 B DC 12 B N3 DC 1 1_555 hydrog WATSON-CRICK A DG 11 A N2 DG 11 1_555 B DC 12 B O2 DC 1 1_555 hydrog WATSON-CRICK A DG 11 A O6 DG 11 1_555 B DC 12 B N4 DC 1 1_555 DNA DNA DUPLEX, HUMAN N-RAS GENE, CODON 61 SEQUENCE, C10R-BPDE ADDUCT, INTERCALATION, N6-ADENINE ADDUCT, DEOXYRIBONUCLEIC ACID, DNA 1AGU PDB 1 1AGU 1AGU PDB 2 1AGU 1 11 1AGU 1 11 1AGU A 1 1 11 12 22 1AGU 12 22 1AGU B 2 1 11 1 P 1