0.011120 0.000000 0.000000 0.000000 0.006475 0.000000 0.000000 0.000000 0.008233 0.00000 0.00000 0.00000 Ghiara, J.B. Wilson, I.A. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 8 90.00 90.00 90.00 89.930 154.430 121.460 C4 H9 N O2 103.120 n ALPHA-AMINOISOBUTYRIC ACID L-peptide linking C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking UK J.Mol.Biol. JMOBAK 0070 0022-2836 266 31 39 10.1006/jmbi.1996.0768 9054968 Structure-based design of a constrained peptide mimic of the HIV-1 V3 loop neutralization site. 1997 10.2210/pdb1ai1/pdb pdb_00001ai1 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 287 1 IMAGE PLATE 1995-08 MARRESEARCH M x-ray 1 1.5418 1.0 1.5418 23675.107 IGG1-KAPPA 59.1 FAB (LIGHT CHAIN) 1 nat polymer 24208.383 IGG1-KAPPA 59.1 FAB (HEAVY CHAIN) 1 nat polymer THE PEPTIDE IS NUMBERED ACCORDING TO THE BH10 ISOLATE 2828.366 AIB142 1 man polymer no no DIVMTQSPASLVVSLGQRATISCRASESVDSYGKSFMHWYQQKPGQPPKVLIYIASNLESGVPARFSGSGSRTDFTLTID PVEADDAATYYCQQNNEDPPTFGAGTKLEMRRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQ NGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNR DIVMTQSPASLVVSLGQRATISCRASESVDSYGKSFMHWYQQKPGQPPKVLIYIASNLESGVPARFSGSGSRTDFTLTID PVEADDAATYYCQQNNEDPPTFGAGTKLEMRRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQ NGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNR L polypeptide(L) no no QVKLQESGPAVIKPSQSLSLTCIVSGFSITRTNYCWHWIRQAPGKGLEWMGRICYEGSIYYSPSIKSRSTISRDTSLNKF FIQLISVTNEDTAMYYCSRENHMYETYFDVWGQGTTVTVSSAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTV TWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSPRPSETVTCNVAHPASSTKVDKKIVPR QVKLQESGPAVIKPSQSLSLTCIVSGFSITRTNYCWHWIRQAPGKGLEWMGRICYEGSIYYSPSIKSRSTISRDTSLNKF FIQLISVTNEDTAMYYCSRENHMYETYFDVWGQGTTVTVSSAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTV TWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSPRPSETVTCNVAHPASSTKVDKKIVPR H polypeptide(L) no yes YNKRKRIHIGPGR(AIB)FYTTKNIIGC YNKRKRIHIGPGRAFYTTKNIIGC P polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n house mouse Mus sample 10090 Mus musculus BALB/C house mouse Mus sample 10090 Mus musculus BALB/C 1 4.16 70.40 6.5 pH 6.5 database_2 pdbx_initial_refinement_model struct_conn struct_ref_seq_dif repository Initial release Version format compliance Version format compliance Database references Derived calculations Refinement description 1 0 1997-05-15 1 1 2008-03-24 1 2 2011-07-13 1 3 2023-08-02 _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_conn.pdbx_leaving_atom_flag _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_ref_seq_dif.details Y BNL 1996-11-06 REL REL THE PEPTIDE IS NUMBERED ACCORDING TO THE BH10 ISOLATE SEQUENCE (L.RATNER ET AL., NATURE 313:277-284 (1985)). 1ACY PDB experimental model ASP 1 n 1 ASP 1 L ILE 2 n 2 ILE 2 L VAL 3 n 3 VAL 3 L MET 4 n 4 MET 4 L THR 5 n 5 THR 5 L GLN 6 n 6 GLN 6 L SER 7 n 7 SER 7 L PRO 8 n 8 PRO 8 L ALA 9 n 9 ALA 9 L SER 10 n 10 SER 10 L LEU 11 n 11 LEU 11 L VAL 12 n 12 VAL 12 L VAL 13 n 13 VAL 13 L SER 14 n 14 SER 14 L LEU 15 n 15 LEU 15 L GLY 16 n 16 GLY 16 L GLN 17 n 17 GLN 17 L ARG 18 n 18 ARG 18 L ALA 19 n 19 ALA 19 L THR 20 n 20 THR 20 L ILE 21 n 21 ILE 21 L SER 22 n 22 SER 22 L CYS 23 n 23 CYS 23 L ARG 24 n 24 ARG 24 L ALA 25 n 25 ALA 25 L SER 26 n 26 SER 26 L GLU 27 n 27 GLU 27 L SER 27 n 28 A SER 27 L VAL 27 n 29 B VAL 27 L ASP 27 n 30 C ASP 27 L SER 27 n 31 D SER 27 L TYR 28 n 32 TYR 28 L GLY 29 n 33 GLY 29 L LYS 30 n 34 LYS 30 L SER 31 n 35 SER 31 L PHE 32 n 36 PHE 32 L MET 33 n 37 MET 33 L HIS 34 n 38 HIS 34 L TRP 35 n 39 TRP 35 L TYR 36 n 40 TYR 36 L GLN 37 n 41 GLN 37 L GLN 38 n 42 GLN 38 L LYS 39 n 43 LYS 39 L PRO 40 n 44 PRO 40 L GLY 41 n 45 GLY 41 L GLN 42 n 46 GLN 42 L PRO 43 n 47 PRO 43 L PRO 44 n 48 PRO 44 L LYS 45 n 49 LYS 45 L VAL 46 n 50 VAL 46 L LEU 47 n 51 LEU 47 L ILE 48 n 52 ILE 48 L TYR 49 n 53 TYR 49 L ILE 50 n 54 ILE 50 L ALA 51 n 55 ALA 51 L SER 52 n 56 SER 52 L ASN 53 n 57 ASN 53 L LEU 54 n 58 LEU 54 L GLU 55 n 59 GLU 55 L SER 56 n 60 SER 56 L GLY 57 n 61 GLY 57 L VAL 58 n 62 VAL 58 L PRO 59 n 63 PRO 59 L ALA 60 n 64 ALA 60 L ARG 61 n 65 ARG 61 L PHE 62 n 66 PHE 62 L SER 63 n 67 SER 63 L GLY 64 n 68 GLY 64 L SER 65 n 69 SER 65 L GLY 66 n 70 GLY 66 L SER 67 n 71 SER 67 L ARG 68 n 72 ARG 68 L THR 69 n 73 THR 69 L ASP 70 n 74 ASP 70 L PHE 71 n 75 PHE 71 L THR 72 n 76 THR 72 L LEU 73 n 77 LEU 73 L THR 74 n 78 THR 74 L ILE 75 n 79 ILE 75 L ASP 76 n 80 ASP 76 L PRO 77 n 81 PRO 77 L VAL 78 n 82 VAL 78 L GLU 79 n 83 GLU 79 L ALA 80 n 84 ALA 80 L ASP 81 n 85 ASP 81 L ASP 82 n 86 ASP 82 L ALA 83 n 87 ALA 83 L ALA 84 n 88 ALA 84 L THR 85 n 89 THR 85 L TYR 86 n 90 TYR 86 L TYR 87 n 91 TYR 87 L CYS 88 n 92 CYS 88 L GLN 89 n 93 GLN 89 L GLN 90 n 94 GLN 90 L ASN 91 n 95 ASN 91 L ASN 92 n 96 ASN 92 L GLU 93 n 97 GLU 93 L ASP 94 n 98 ASP 94 L PRO 95 n 99 PRO 95 L PRO 96 n 100 PRO 96 L THR 97 n 101 THR 97 L PHE 98 n 102 PHE 98 L GLY 99 n 103 GLY 99 L ALA 100 n 104 ALA 100 L GLY 101 n 105 GLY 101 L THR 102 n 106 THR 102 L LYS 103 n 107 LYS 103 L LEU 104 n 108 LEU 104 L GLU 105 n 109 GLU 105 L MET 106 n 110 MET 106 L ARG 107 n 111 ARG 107 L ARG 108 n 112 ARG 108 L ALA 109 n 113 ALA 109 L ASP 110 n 114 ASP 110 L ALA 111 n 115 ALA 111 L ALA 112 n 116 ALA 112 L PRO 113 n 117 PRO 113 L THR 114 n 118 THR 114 L VAL 115 n 119 VAL 115 L SER 116 n 120 SER 116 L ILE 117 n 121 ILE 117 L PHE 118 n 122 PHE 118 L PRO 119 n 123 PRO 119 L PRO 120 n 124 PRO 120 L SER 121 n 125 SER 121 L SER 122 n 126 SER 122 L GLU 123 n 127 GLU 123 L GLN 124 n 128 GLN 124 L LEU 125 n 129 LEU 125 L THR 126 n 130 THR 126 L SER 127 n 131 SER 127 L GLY 128 n 132 GLY 128 L GLY 129 n 133 GLY 129 L ALA 130 n 134 ALA 130 L SER 131 n 135 SER 131 L VAL 132 n 136 VAL 132 L VAL 133 n 137 VAL 133 L CYS 134 n 138 CYS 134 L PHE 135 n 139 PHE 135 L LEU 136 n 140 LEU 136 L ASN 137 n 141 ASN 137 L ASN 138 n 142 ASN 138 L PHE 139 n 143 PHE 139 L TYR 140 n 144 TYR 140 L PRO 141 n 145 PRO 141 L LYS 142 n 146 LYS 142 L ASP 143 n 147 ASP 143 L ILE 144 n 148 ILE 144 L ASN 145 n 149 ASN 145 L VAL 146 n 150 VAL 146 L LYS 147 n 151 LYS 147 L TRP 148 n 152 TRP 148 L LYS 149 n 153 LYS 149 L ILE 150 n 154 ILE 150 L ASP 151 n 155 ASP 151 L GLY 152 n 156 GLY 152 L SER 153 n 157 SER 153 L GLU 154 n 158 GLU 154 L ARG 155 n 159 ARG 155 L GLN 156 n 160 GLN 156 L ASN 157 n 161 ASN 157 L GLY 158 n 162 GLY 158 L VAL 159 n 163 VAL 159 L LEU 160 n 164 LEU 160 L ASN 161 n 165 ASN 161 L SER 162 n 166 SER 162 L TRP 163 n 167 TRP 163 L THR 164 n 168 THR 164 L ASP 165 n 169 ASP 165 L GLN 166 n 170 GLN 166 L ASP 167 n 171 ASP 167 L SER 168 n 172 SER 168 L LYS 169 n 173 LYS 169 L ASP 170 n 174 ASP 170 L SER 171 n 175 SER 171 L THR 172 n 176 THR 172 L TYR 173 n 177 TYR 173 L SER 174 n 178 SER 174 L MET 175 n 179 MET 175 L SER 176 n 180 SER 176 L SER 177 n 181 SER 177 L THR 178 n 182 THR 178 L LEU 179 n 183 LEU 179 L THR 180 n 184 THR 180 L LEU 181 n 185 LEU 181 L THR 182 n 186 THR 182 L LYS 183 n 187 LYS 183 L ASP 184 n 188 ASP 184 L GLU 185 n 189 GLU 185 L TYR 186 n 190 TYR 186 L GLU 187 n 191 GLU 187 L ARG 188 n 192 ARG 188 L HIS 189 n 193 HIS 189 L ASN 190 n 194 ASN 190 L SER 191 n 195 SER 191 L TYR 192 n 196 TYR 192 L THR 193 n 197 THR 193 L CYS 194 n 198 CYS 194 L GLU 195 n 199 GLU 195 L ALA 196 n 200 ALA 196 L THR 197 n 201 THR 197 L HIS 198 n 202 HIS 198 L LYS 199 n 203 LYS 199 L THR 200 n 204 THR 200 L SER 201 n 205 SER 201 L THR 202 n 206 THR 202 L SER 203 n 207 SER 203 L PRO 204 n 208 PRO 204 L ILE 205 n 209 ILE 205 L VAL 206 n 210 VAL 206 L LYS 207 n 211 LYS 207 L SER 208 n 212 SER 208 L PHE 209 n 213 PHE 209 L ASN 210 n 214 ASN 210 L ARG 211 n 215 ARG 211 L GLN 1 n 1 GLN 1 H VAL 2 n 2 VAL 2 H LYS 3 n 3 LYS 3 H LEU 4 n 4 LEU 4 H GLN 5 n 5 GLN 5 H GLU 6 n 6 GLU 6 H SER 7 n 7 SER 7 H GLY 8 n 8 GLY 8 H PRO 9 n 9 PRO 9 H ALA 10 n 10 ALA 10 H VAL 11 n 11 VAL 11 H ILE 12 n 12 ILE 12 H LYS 13 n 13 LYS 13 H PRO 14 n 14 PRO 14 H SER 15 n 15 SER 15 H GLN 16 n 16 GLN 16 H SER 17 n 17 SER 17 H LEU 18 n 18 LEU 18 H SER 19 n 19 SER 19 H LEU 20 n 20 LEU 20 H THR 21 n 21 THR 21 H CYS 22 n 22 CYS 22 H ILE 23 n 23 ILE 23 H VAL 24 n 24 VAL 24 H SER 25 n 25 SER 25 H GLY 26 n 26 GLY 26 H PHE 27 n 27 PHE 27 H SER 28 n 28 SER 28 H ILE 29 n 29 ILE 29 H THR 30 n 30 THR 30 H ARG 31 n 31 ARG 31 H THR 32 n 32 THR 32 H ASN 33 n 33 ASN 33 H TYR 34 n 34 TYR 34 H CYS 35 n 35 CYS 35 H TRP 35 n 36 A TRP 35 H HIS 35 n 37 B HIS 35 H TRP 36 n 38 TRP 36 H ILE 37 n 39 ILE 37 H ARG 38 n 40 ARG 38 H GLN 39 n 41 GLN 39 H ALA 40 n 42 ALA 40 H PRO 41 n 43 PRO 41 H GLY 42 n 44 GLY 42 H LYS 43 n 45 LYS 43 H GLY 44 n 46 GLY 44 H LEU 45 n 47 LEU 45 H GLU 46 n 48 GLU 46 H TRP 47 n 49 TRP 47 H MET 48 n 50 MET 48 H GLY 49 n 51 GLY 49 H ARG 50 n 52 ARG 50 H ILE 51 n 53 ILE 51 H CYS 52 n 54 CYS 52 H TYR 53 n 55 TYR 53 H GLU 54 n 56 GLU 54 H GLY 55 n 57 GLY 55 H SER 56 n 58 SER 56 H ILE 57 n 59 ILE 57 H TYR 58 n 60 TYR 58 H TYR 59 n 61 TYR 59 H SER 60 n 62 SER 60 H PRO 61 n 63 PRO 61 H SER 62 n 64 SER 62 H ILE 63 n 65 ILE 63 H LYS 64 n 66 LYS 64 H SER 65 n 67 SER 65 H ARG 66 n 68 ARG 66 H SER 67 n 69 SER 67 H THR 68 n 70 THR 68 H ILE 69 n 71 ILE 69 H SER 70 n 72 SER 70 H ARG 71 n 73 ARG 71 H ASP 72 n 74 ASP 72 H THR 73 n 75 THR 73 H SER 74 n 76 SER 74 H LEU 75 n 77 LEU 75 H ASN 76 n 78 ASN 76 H LYS 77 n 79 LYS 77 H PHE 78 n 80 PHE 78 H PHE 79 n 81 PHE 79 H ILE 80 n 82 ILE 80 H GLN 81 n 83 GLN 81 H LEU 82 n 84 LEU 82 H ILE 82 n 85 A ILE 82 H SER 82 n 86 B SER 82 H VAL 82 n 87 C VAL 82 H THR 83 n 88 THR 83 H ASN 84 n 89 ASN 84 H GLU 85 n 90 GLU 85 H ASP 86 n 91 ASP 86 H THR 87 n 92 THR 87 H ALA 88 n 93 ALA 88 H MET 89 n 94 MET 89 H TYR 90 n 95 TYR 90 H TYR 91 n 96 TYR 91 H CYS 92 n 97 CYS 92 H SER 93 n 98 SER 93 H ARG 94 n 99 ARG 94 H GLU 95 n 100 GLU 95 H ASN 96 n 101 ASN 96 H HIS 97 n 102 HIS 97 H MET 98 n 103 MET 98 H TYR 99 n 104 TYR 99 H GLU 100 n 105 GLU 100 H THR 100 n 106 A THR 100 H TYR 100 n 107 B TYR 100 H PHE 100 n 108 C PHE 100 H ASP 101 n 109 ASP 101 H VAL 102 n 110 VAL 102 H TRP 103 n 111 TRP 103 H GLY 104 n 112 GLY 104 H GLN 105 n 113 GLN 105 H GLY 106 n 114 GLY 106 H THR 107 n 115 THR 107 H THR 108 n 116 THR 108 H VAL 109 n 117 VAL 109 H THR 110 n 118 THR 110 H VAL 111 n 119 VAL 111 H SER 112 n 120 SER 112 H SER 113 n 121 SER 113 H ALA 114 n 122 ALA 114 H LYS 115 n 123 LYS 115 H THR 116 n 124 THR 116 H THR 117 n 125 THR 117 H PRO 118 n 126 PRO 118 H PRO 119 n 127 PRO 119 H SER 120 n 128 SER 120 H VAL 121 n 129 VAL 121 H TYR 122 n 130 TYR 122 H PRO 123 n 131 PRO 123 H LEU 124 n 132 LEU 124 H ALA 125 n 133 ALA 125 H PRO 126 n 134 PRO 126 H GLY 127 n 135 GLY 127 H SER 128 n 136 SER 128 H ALA 129 n 137 ALA 129 H ALA 130 n 138 ALA 130 H GLN 133 n 139 GLN 133 H THR 134 n 140 THR 134 H ASN 135 n 141 ASN 135 H SER 136 n 142 SER 136 H MET 137 n 143 MET 137 H VAL 138 n 144 VAL 138 H THR 139 n 145 THR 139 H LEU 140 n 146 LEU 140 H GLY 141 n 147 GLY 141 H CYS 142 n 148 CYS 142 H LEU 143 n 149 LEU 143 H VAL 144 n 150 VAL 144 H LYS 145 n 151 LYS 145 H GLY 146 n 152 GLY 146 H TYR 147 n 153 TYR 147 H PHE 148 n 154 PHE 148 H PRO 149 n 155 PRO 149 H GLU 150 n 156 GLU 150 H PRO 151 n 157 PRO 151 H VAL 152 n 158 VAL 152 H THR 153 n 159 THR 153 H VAL 154 n 160 VAL 154 H THR 156 n 161 THR 156 H TRP 157 n 162 TRP 157 H ASN 162 n 163 ASN 162 H SER 163 n 164 SER 163 H GLY 164 n 165 GLY 164 H SER 165 n 166 SER 165 H LEU 166 n 167 LEU 166 H SER 167 n 168 SER 167 H SER 168 n 169 SER 168 H GLY 169 n 170 GLY 169 H VAL 171 n 171 VAL 171 H HIS 172 n 172 HIS 172 H THR 173 n 173 THR 173 H PHE 174 n 174 PHE 174 H PRO 175 n 175 PRO 175 H ALA 176 n 176 ALA 176 H VAL 177 n 177 VAL 177 H LEU 178 n 178 LEU 178 H GLN 179 n 179 GLN 179 H SER 180 n 180 SER 180 H ASP 183 n 181 ASP 183 H LEU 184 n 182 LEU 184 H TYR 185 n 183 TYR 185 H THR 186 n 184 THR 186 H LEU 187 n 185 LEU 187 H SER 188 n 186 SER 188 H SER 189 n 187 SER 189 H SER 190 n 188 SER 190 H VAL 191 n 189 VAL 191 H THR 192 n 190 THR 192 H VAL 193 n 191 VAL 193 H PRO 194 n 192 PRO 194 H SER 195 n 193 SER 195 H SER 196 n 194 SER 196 H PRO 198 n 195 PRO 198 H ARG 199 n 196 ARG 199 H PRO 200 n 197 PRO 200 H SER 202 n 198 SER 202 H GLU 203 n 199 GLU 203 H THR 204 n 200 THR 204 H VAL 205 n 201 VAL 205 H THR 206 n 202 THR 206 H CYS 208 n 203 CYS 208 H ASN 209 n 204 ASN 209 H VAL 210 n 205 VAL 210 H ALA 211 n 206 ALA 211 H HIS 212 n 207 HIS 212 H PRO 213 n 208 PRO 213 H ALA 214 n 209 ALA 214 H SER 215 n 210 SER 215 H SER 216 n 211 SER 216 H THR 217 n 212 THR 217 H LYS 218 n 213 LYS 218 H VAL 219 n 214 VAL 219 H ASP 220 n 215 ASP 220 H LYS 221 n 216 LYS 221 H LYS 222 n 217 LYS 222 H ILE 223 n 218 ILE 223 H VAL 224 n 219 VAL 224 H PRO 225 n 220 PRO 225 H ARG 226 n 221 ARG 226 H n 1 308 P n 2 309 P n 3 310 P n 4 311 P n 5 312 P n 6 313 P n 7 314 P HIS 315 n 8 HIS 315 P ILE 316 n 9 ILE 316 P GLY 319 n 10 GLY 319 P PRO 320 n 11 PRO 320 P GLY 321 n 12 GLY 321 P ARG 322 n 13 ARG 322 P AIB 323 n 14 AIB 323 P PHE 324 n 15 PHE 324 P TYR 325 n 16 TYR 325 P THR 326 n 17 THR 326 P n 18 327 P n 19 328 P n 20 329 P n 21 330 P n 22 331 P n 23 332 P n 24 333 P author_and_software_defined_assembly PISA 3 trimeric 4490 -31 19500 P AIB 323 ALPHA-AMINOISOBUTYRIC ACID C AIB 14 ALA 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 L O THR 5 A O THR 5 L N ARG 24 A N ARG 24 L O ALA 19 A O ALA 19 L N ILE 75 A N ILE 79 L O ASP 70 A O ASP 74 L N SER 67 A N SER 71 L O LEU 11 A O LEU 11 L N LYS 103 A N LYS 107 L O THR 102 A O THR 106 L N TYR 86 A N TYR 90 L O THR 85 A O THR 89 L N GLN 38 A N GLN 42 L O TRP 35 A O TRP 39 L N ILE 48 A N ILE 52 L O THR 114 A O THR 118 L N ASN 137 A N ASN 141 L O ALA 130 A O ALA 134 L N LEU 181 A N LEU 185 L O SER 176 A O SER 180 L N SER 162 A N SER 166 L O ASN 145 A O ASN 149 L N THR 197 A N THR 201 L O TYR 192 A O TYR 196 L N PHE 209 A N PHE 213 H O LYS 3 B O LYS 3 H N SER 25 B N SER 25 H O LEU 18 B O LEU 18 H N LEU 82 B N LEU 84 H O LYS 77 B O LYS 79 H N ASP 72 B N ASP 74 H O THR 107 B O THR 115 H N TYR 90 B N TYR 95 H O MET 89 B O MET 94 H N GLN 39 B N GLN 41 A H O TRP 35 B O TRP 36 H N ILE 51 B N ILE 53 H O ARG 50 B O ARG 52 H N TYR 58 B N TYR 60 H O SER 120 B O SER 128 H N LYS 145 B N LYS 151 H O VAL 138 B O VAL 144 H N VAL 193 B N VAL 191 H O SER 188 B O SER 186 H N PHE 174 B N PHE 174 H O THR 153 B O THR 159 H N ALA 211 B N ALA 206 H O CYS 208 B O CYS 203 H N LYS 221 B N LYS 216 H O ARG 94 B O ARG 99 H N VAL 102 B N VAL 110 1 P TYR 308 C TYR 1 1 Y 1 P ASN 309 C ASN 2 1 Y 1 P LYS 310 C LYS 3 1 Y 1 P ARG 311 C ARG 4 1 Y 1 P LYS 312 C LYS 5 1 Y 1 P ARG 313 C ARG 6 1 Y 1 P ILE 314 C ILE 7 1 Y 1 P THR 327 C THR 18 1 Y 1 P LYS 328 C LYS 19 1 Y 1 P ASN 329 C ASN 20 1 Y 1 P ILE 330 C ILE 21 1 Y 1 P ILE 331 C ILE 22 1 Y 1 P GLY 332 C GLY 23 1 Y 1 P CYS 333 C CYS 24 1 Y 1 L TYR 140 0.072 SIDE CHAIN 1 L ALA 51 70.27 -47.30 1 L SER 63 -171.77 128.63 1 L ARG 68 52.73 -87.03 1 L SER 122 -9.68 -63.10 1 L SER 127 -79.39 33.84 1 L ALA 130 -161.53 112.52 1 L ASN 138 54.17 73.46 1 L LYS 149 -171.45 134.46 1 L SER 153 -58.97 103.06 1 L ARG 188 -92.66 52.44 1 L HIS 189 -162.98 -169.58 1 L ASN 190 -155.47 -29.04 1 H ASN 33 88.79 -46.79 1 H GLU 54 -88.26 39.29 1 H ASN 76 63.05 66.02 1 H ALA 88 -176.71 -174.81 1 H SER 128 69.32 -15.43 1 H ASN 135 61.59 -156.72 1 H SER 163 38.71 62.43 1 H SER 180 54.97 80.00 1 H PRO 198 -51.39 24.60 1 H ARG 199 174.60 124.06 1 H ALA 214 -62.07 18.33 1 H SER 215 -169.07 17.14 1 H SER 216 44.78 19.24 30. 0.22 0.22 2.8 12.0 18955 91. 1 0.0 MOLECULAR REPLACEMENT 1ACY 2.8 12.0 0 3443 0 0 3443 2.8 1AI1 19192 0.08 1 92. 2.8 2.9 90. data reduction MOSFLM model building X-PLOR 3.1 refinement X-PLOR 3.1 phasing X-PLOR 3.1 HIV-1 V3 LOOP MIMIC 1 N N 2 N N 3 N N L ALA 80 A ALA 84 HELX_P L ASP 82 A ASP 86 5 1 3 L SER 122 A SER 126 HELX_P L THR 126 A THR 130 1 2 5 L LYS 183 A LYS 187 HELX_P L GLU 187 A GLU 191 1 3 5 H PRO 61 B PRO 63 HELX_P H ARG 66 B ARG 68 1 4 6 H ASN 84 B ASN 89 HELX_P H ASP 86 B ASP 91 5 5 3 H PRO 213 B PRO 208 HELX_P H SER 215 B SER 210 5 6 3 disulf 2.030 L CYS 23 A SG CYS 23 1_555 L CYS 88 A SG CYS 92 1_555 disulf 2.018 L CYS 134 A SG CYS 138 1_555 L CYS 194 A SG CYS 198 1_555 disulf 2.041 H CYS 22 B SG CYS 22 1_555 H CYS 92 B SG CYS 97 1_555 disulf 2.022 H CYS 35 B SG CYS 35 1_555 H CYS 52 B SG CYS 54 1_555 disulf 2.013 H CYS 142 B SG CYS 148 1_555 H CYS 208 B SG CYS 203 1_555 covale 1.329 both P ARG 322 C C ARG 13 1_555 P AIB 323 C N AIB 14 1_555 covale 1.329 both P AIB 323 C C AIB 14 1_555 P PHE 324 C N PHE 15 1_555 COMPLEX (ANTIBODY/PEPTIDE) COMPLEX (ANTIBODY-PEPTIDE), ANTIBODY, CONSTRAINED HIV-1 V3 LOOP PEPTIDE, IMMUNOGLOBULIN, COMPLEX (ANTIBODY-PEPTIDE) complex L SER 7 A SER 7 1 L PRO 8 A PRO 8 -0.44 L ASP 76 A ASP 80 1 L PRO 77 A PRO 81 0.09 L ASP 94 A ASP 98 1 L PRO 95 A PRO 99 0.11 L TYR 140 A TYR 144 1 L PRO 141 A PRO 145 -0.15 H PHE 148 B PHE 154 1 H PRO 149 B PRO 155 0.15 H GLU 150 B GLU 156 1 H PRO 151 B PRO 157 -0.31 H ARG 199 B ARG 196 1 H PRO 200 B PRO 197 -0.15 CAB75889 EMBL 1 1 AJ272393 NIVLTQSPASLAVSLGQRATISCRANESVYSYGDSFMHWYQQKPGQPPKLLIYLASNLASGVPARFSGSGSRTDFTLTID PVEADDAATYYCQQNNEDPWTFGGGTKLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQ NGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNEC GC1_MOUSE UNP 2 1 P01868 AKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSPRPSETV TCNVAHPASSTKVDKKIVPRDCGCKPCICTVPEVSSVFIFPPKPKDVLTITLTPKVTCVVVDISKDDPEVQFSWFVDDVE VHTAQTQPREEQFNSTFRSVSELPIMHQDWLNGKEFKCRVNSAAFPAPIEKTISKTKGRPKAPQVYTIPPPKEQMAKDKV SLTCMITDFFPEDITVEWQWNGQPAENYKNTQPIMNTNGSYFVYSKLNVQKSNWEAGNTFTCSVLHEGLHNHHTEKSLSH SPGK ENV_HV1MN UNP 3 1 P05877 MRVKGIRRNYQHWWGWGTMLLGLLMICSATEKLWVTVYYGVPVWKEATTTLFCASDAKAYDTEVHNVWATQACVPTDPNP QEVELVNVTENFNMWKNNMVEQMHEDIISLWDQSLKPCVKLTPLCVTLNCTDLRNTTNTNNSTANNNSNSEGTIKGGEMK NCSFNITTSIRDKMQKEYALLYKLDIVSIDNDSTSYRLISCNTSVITQACPKISFEPIPIHYCAPAGFAILKCNDKKFSG KGSCKNVSTVQCTHGIRPVVSTQLLLNGSLAEEEVVIRSENFTDNAKTIIVHLNESVQINCTRPNYNKRKRIHIGPGRAF YTTKNIIGTIRQAHCNISRAKWNDTLRQIVSKLKEQFKNKTIVFNQSSGGDPEIVMHSFNCGGEFFYCNTSPLFNSTWNG NNTWNNTTGSNNNITLQCKIKQIINMWQEVGKAMYAPPIEGQIRCSSNITGLLLTRDGGKDTDTNDTEIFRPGGGDMRDN WRSELYKYKVVTIEPLGVAPTKAKRRVVQREKRAAIGALFLGFLGAAGSTMGAASVTLTVQARLLLSGIVQQQNNLLRAI EAQQHMLQLTVWGIKQLQARVLAVERYLKDQQLLGFWGCSGKLICTTTVPWNASWSNKSLDDIWNNMTWMQWEREIDNYT SLIYSLLEKSQTQQEKNEQELLELDKWASLWNWFDITNWLWYIKIFIMIVGGLVGLRIVFAVLSIVNRVRQGYSPLSLQT RPPVPRGPDRPEGIEEEGGERDRDTSGRLVHGFLAIIWVDLRSLFLFSYHHRDLLLIAARIVELLGRRGWEVLKYWWNLL QYWSQELKSSAVSLLNATAIAVAEGTDRVIEVLQRAGRAILHIPTRIRQGLERALL 2 215 1AI1 2 211 AJ272393 L 1 2 215 1 100 1AI1 114 226 P01868 H 2 122 221 306 328 1AI1 308 332 P05877 P 3 1 23 1 LEU conflict MET 4 1AI1 L AJ272393 EMBL 4 4 1 ALA conflict VAL 12 1AI1 L AJ272393 EMBL 12 12 1 ASN conflict SER 26 1AI1 L AJ272393 EMBL 26 26 1 TYR conflict ASP 27 1AI1 C L AJ272393 EMBL 30 30 1 ASP conflict LYS 30 1AI1 L AJ272393 EMBL 34 34 1 LEU conflict VAL 46 1AI1 L AJ272393 EMBL 50 50 1 LEU conflict ILE 50 1AI1 L AJ272393 EMBL 54 54 1 ALA conflict GLU 55 1AI1 L AJ272393 EMBL 59 59 1 TRP conflict PRO 96 1AI1 L AJ272393 EMBL 100 100 1 GLY conflict ALA 100 1AI1 L AJ272393 EMBL 104 104 1 ILE conflict MET 106 1AI1 L AJ272393 EMBL 110 110 1 LYS conflict ARG 107 1AI1 L AJ272393 EMBL 111 111 3 ALA conflict AIB 323 1AI1 P P05877 UNP 319 14 4 5 4 3 4 5 4 3 2 anti-parallel anti-parallel anti-parallel parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel L MET 4 A MET 4 L SER 7 A SER 7 L ALA 19 A ALA 19 L ALA 25 A ALA 25 L ASP 70 A ASP 74 L ILE 75 A ILE 79 L PHE 62 A PHE 66 L SER 67 A SER 71 L SER 10 A SER 10 L SER 14 A SER 14 L THR 102 A THR 106 L ARG 107 A ARG 111 L ALA 84 A ALA 88 L GLN 90 A GLN 94 L MET 33 A MET 37 L GLN 38 A GLN 42 L LYS 45 A LYS 49 L ILE 48 A ILE 52 L THR 114 A THR 118 L PHE 118 A PHE 122 L ALA 130 A ALA 134 L ASN 137 A ASN 141 L MET 175 A MET 179 L LEU 181 A LEU 185 L VAL 159 A VAL 163 L TRP 163 A TRP 167 L ASN 145 A ASN 149 L ILE 150 A ILE 154 L SER 191 A SER 195 L THR 197 A THR 201 L ILE 205 A ILE 209 L ASN 210 A ASN 214 H LYS 3 B LYS 3 H SER 7 B SER 7 H LEU 18 B LEU 18 H SER 25 B SER 25 H LYS 77 B LYS 79 H LEU 82 B LEU 84 H SER 67 B SER 69 H ASP 72 B ASP 74 H THR 107 B THR 115 H VAL 109 B VAL 117 H ALA 88 B ALA 93 H ASN 96 B ASN 101 H TYR 34 B TYR 34 H ALA 40 B ALA 42 H LEU 45 B LEU 47 H CYS 52 B CYS 54 H ILE 57 B ILE 59 H TYR 59 B TYR 61 H SER 120 B SER 128 H LEU 124 B LEU 132 H MET 137 B MET 143 H TYR 147 B TYR 153 H TYR 185 B TYR 183 H PRO 194 B PRO 192 H VAL 171 B VAL 171 H PHE 174 B PHE 174 H THR 153 B THR 159 H TRP 157 B TRP 162 H THR 206 B THR 202 H HIS 212 B HIS 207 H THR 217 B THR 212 H LYS 222 B LYS 217 H SER 93 B SER 98 H GLU 95 B GLU 100 H PHE 100 B PHE 108 H TRP 103 B TRP 111 C 20 C 2 2 21