0.011120
0.000000
0.000000
0.000000
0.006475
0.000000
0.000000
0.000000
0.008233
0.00000
0.00000
0.00000
Ghiara, J.B.
Wilson, I.A.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.00
90.00
90.00
89.930
154.430
121.460
C4 H9 N O2
103.120
n
ALPHA-AMINOISOBUTYRIC ACID
L-peptide linking
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
UK
J.Mol.Biol.
JMOBAK
0070
0022-2836
266
31
39
10.1006/jmbi.1996.0768
9054968
Structure-based design of a constrained peptide mimic of the HIV-1 V3 loop neutralization site.
1997
10.2210/pdb1ai1/pdb
pdb_00001ai1
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
287
1
IMAGE PLATE
1995-08
MARRESEARCH
M
x-ray
1
1.5418
1.0
1.5418
23675.107
IGG1-KAPPA 59.1 FAB (LIGHT CHAIN)
1
nat
polymer
24208.383
IGG1-KAPPA 59.1 FAB (HEAVY CHAIN)
1
nat
polymer
THE PEPTIDE IS NUMBERED ACCORDING TO THE BH10 ISOLATE
2828.366
AIB142
1
man
polymer
no
no
DIVMTQSPASLVVSLGQRATISCRASESVDSYGKSFMHWYQQKPGQPPKVLIYIASNLESGVPARFSGSGSRTDFTLTID
PVEADDAATYYCQQNNEDPPTFGAGTKLEMRRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQ
NGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNR
DIVMTQSPASLVVSLGQRATISCRASESVDSYGKSFMHWYQQKPGQPPKVLIYIASNLESGVPARFSGSGSRTDFTLTID
PVEADDAATYYCQQNNEDPPTFGAGTKLEMRRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQ
NGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNR
L
polypeptide(L)
no
no
QVKLQESGPAVIKPSQSLSLTCIVSGFSITRTNYCWHWIRQAPGKGLEWMGRICYEGSIYYSPSIKSRSTISRDTSLNKF
FIQLISVTNEDTAMYYCSRENHMYETYFDVWGQGTTVTVSSAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTV
TWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSPRPSETVTCNVAHPASSTKVDKKIVPR
QVKLQESGPAVIKPSQSLSLTCIVSGFSITRTNYCWHWIRQAPGKGLEWMGRICYEGSIYYSPSIKSRSTISRDTSLNKF
FIQLISVTNEDTAMYYCSRENHMYETYFDVWGQGTTVTVSSAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTV
TWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSPRPSETVTCNVAHPASSTKVDKKIVPR
H
polypeptide(L)
no
yes
YNKRKRIHIGPGR(AIB)FYTTKNIIGC
YNKRKRIHIGPGRAFYTTKNIIGC
P
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
house mouse
Mus
sample
10090
Mus musculus
BALB/C
house mouse
Mus
sample
10090
Mus musculus
BALB/C
1
4.16
70.40
6.5
pH 6.5
database_2
pdbx_initial_refinement_model
struct_conn
struct_ref_seq_dif
repository
Initial release
Version format compliance
Version format compliance
Database references
Derived calculations
Refinement description
1
0
1997-05-15
1
1
2008-03-24
1
2
2011-07-13
1
3
2023-08-02
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_ref_seq_dif.details
Y
BNL
1996-11-06
REL
REL
THE PEPTIDE IS NUMBERED ACCORDING TO THE BH10 ISOLATE
SEQUENCE (L.RATNER ET AL., NATURE 313:277-284 (1985)).
1ACY
PDB
experimental model
ASP
1
n
1
ASP
1
L
ILE
2
n
2
ILE
2
L
VAL
3
n
3
VAL
3
L
MET
4
n
4
MET
4
L
THR
5
n
5
THR
5
L
GLN
6
n
6
GLN
6
L
SER
7
n
7
SER
7
L
PRO
8
n
8
PRO
8
L
ALA
9
n
9
ALA
9
L
SER
10
n
10
SER
10
L
LEU
11
n
11
LEU
11
L
VAL
12
n
12
VAL
12
L
VAL
13
n
13
VAL
13
L
SER
14
n
14
SER
14
L
LEU
15
n
15
LEU
15
L
GLY
16
n
16
GLY
16
L
GLN
17
n
17
GLN
17
L
ARG
18
n
18
ARG
18
L
ALA
19
n
19
ALA
19
L
THR
20
n
20
THR
20
L
ILE
21
n
21
ILE
21
L
SER
22
n
22
SER
22
L
CYS
23
n
23
CYS
23
L
ARG
24
n
24
ARG
24
L
ALA
25
n
25
ALA
25
L
SER
26
n
26
SER
26
L
GLU
27
n
27
GLU
27
L
SER
27
n
28
A
SER
27
L
VAL
27
n
29
B
VAL
27
L
ASP
27
n
30
C
ASP
27
L
SER
27
n
31
D
SER
27
L
TYR
28
n
32
TYR
28
L
GLY
29
n
33
GLY
29
L
LYS
30
n
34
LYS
30
L
SER
31
n
35
SER
31
L
PHE
32
n
36
PHE
32
L
MET
33
n
37
MET
33
L
HIS
34
n
38
HIS
34
L
TRP
35
n
39
TRP
35
L
TYR
36
n
40
TYR
36
L
GLN
37
n
41
GLN
37
L
GLN
38
n
42
GLN
38
L
LYS
39
n
43
LYS
39
L
PRO
40
n
44
PRO
40
L
GLY
41
n
45
GLY
41
L
GLN
42
n
46
GLN
42
L
PRO
43
n
47
PRO
43
L
PRO
44
n
48
PRO
44
L
LYS
45
n
49
LYS
45
L
VAL
46
n
50
VAL
46
L
LEU
47
n
51
LEU
47
L
ILE
48
n
52
ILE
48
L
TYR
49
n
53
TYR
49
L
ILE
50
n
54
ILE
50
L
ALA
51
n
55
ALA
51
L
SER
52
n
56
SER
52
L
ASN
53
n
57
ASN
53
L
LEU
54
n
58
LEU
54
L
GLU
55
n
59
GLU
55
L
SER
56
n
60
SER
56
L
GLY
57
n
61
GLY
57
L
VAL
58
n
62
VAL
58
L
PRO
59
n
63
PRO
59
L
ALA
60
n
64
ALA
60
L
ARG
61
n
65
ARG
61
L
PHE
62
n
66
PHE
62
L
SER
63
n
67
SER
63
L
GLY
64
n
68
GLY
64
L
SER
65
n
69
SER
65
L
GLY
66
n
70
GLY
66
L
SER
67
n
71
SER
67
L
ARG
68
n
72
ARG
68
L
THR
69
n
73
THR
69
L
ASP
70
n
74
ASP
70
L
PHE
71
n
75
PHE
71
L
THR
72
n
76
THR
72
L
LEU
73
n
77
LEU
73
L
THR
74
n
78
THR
74
L
ILE
75
n
79
ILE
75
L
ASP
76
n
80
ASP
76
L
PRO
77
n
81
PRO
77
L
VAL
78
n
82
VAL
78
L
GLU
79
n
83
GLU
79
L
ALA
80
n
84
ALA
80
L
ASP
81
n
85
ASP
81
L
ASP
82
n
86
ASP
82
L
ALA
83
n
87
ALA
83
L
ALA
84
n
88
ALA
84
L
THR
85
n
89
THR
85
L
TYR
86
n
90
TYR
86
L
TYR
87
n
91
TYR
87
L
CYS
88
n
92
CYS
88
L
GLN
89
n
93
GLN
89
L
GLN
90
n
94
GLN
90
L
ASN
91
n
95
ASN
91
L
ASN
92
n
96
ASN
92
L
GLU
93
n
97
GLU
93
L
ASP
94
n
98
ASP
94
L
PRO
95
n
99
PRO
95
L
PRO
96
n
100
PRO
96
L
THR
97
n
101
THR
97
L
PHE
98
n
102
PHE
98
L
GLY
99
n
103
GLY
99
L
ALA
100
n
104
ALA
100
L
GLY
101
n
105
GLY
101
L
THR
102
n
106
THR
102
L
LYS
103
n
107
LYS
103
L
LEU
104
n
108
LEU
104
L
GLU
105
n
109
GLU
105
L
MET
106
n
110
MET
106
L
ARG
107
n
111
ARG
107
L
ARG
108
n
112
ARG
108
L
ALA
109
n
113
ALA
109
L
ASP
110
n
114
ASP
110
L
ALA
111
n
115
ALA
111
L
ALA
112
n
116
ALA
112
L
PRO
113
n
117
PRO
113
L
THR
114
n
118
THR
114
L
VAL
115
n
119
VAL
115
L
SER
116
n
120
SER
116
L
ILE
117
n
121
ILE
117
L
PHE
118
n
122
PHE
118
L
PRO
119
n
123
PRO
119
L
PRO
120
n
124
PRO
120
L
SER
121
n
125
SER
121
L
SER
122
n
126
SER
122
L
GLU
123
n
127
GLU
123
L
GLN
124
n
128
GLN
124
L
LEU
125
n
129
LEU
125
L
THR
126
n
130
THR
126
L
SER
127
n
131
SER
127
L
GLY
128
n
132
GLY
128
L
GLY
129
n
133
GLY
129
L
ALA
130
n
134
ALA
130
L
SER
131
n
135
SER
131
L
VAL
132
n
136
VAL
132
L
VAL
133
n
137
VAL
133
L
CYS
134
n
138
CYS
134
L
PHE
135
n
139
PHE
135
L
LEU
136
n
140
LEU
136
L
ASN
137
n
141
ASN
137
L
ASN
138
n
142
ASN
138
L
PHE
139
n
143
PHE
139
L
TYR
140
n
144
TYR
140
L
PRO
141
n
145
PRO
141
L
LYS
142
n
146
LYS
142
L
ASP
143
n
147
ASP
143
L
ILE
144
n
148
ILE
144
L
ASN
145
n
149
ASN
145
L
VAL
146
n
150
VAL
146
L
LYS
147
n
151
LYS
147
L
TRP
148
n
152
TRP
148
L
LYS
149
n
153
LYS
149
L
ILE
150
n
154
ILE
150
L
ASP
151
n
155
ASP
151
L
GLY
152
n
156
GLY
152
L
SER
153
n
157
SER
153
L
GLU
154
n
158
GLU
154
L
ARG
155
n
159
ARG
155
L
GLN
156
n
160
GLN
156
L
ASN
157
n
161
ASN
157
L
GLY
158
n
162
GLY
158
L
VAL
159
n
163
VAL
159
L
LEU
160
n
164
LEU
160
L
ASN
161
n
165
ASN
161
L
SER
162
n
166
SER
162
L
TRP
163
n
167
TRP
163
L
THR
164
n
168
THR
164
L
ASP
165
n
169
ASP
165
L
GLN
166
n
170
GLN
166
L
ASP
167
n
171
ASP
167
L
SER
168
n
172
SER
168
L
LYS
169
n
173
LYS
169
L
ASP
170
n
174
ASP
170
L
SER
171
n
175
SER
171
L
THR
172
n
176
THR
172
L
TYR
173
n
177
TYR
173
L
SER
174
n
178
SER
174
L
MET
175
n
179
MET
175
L
SER
176
n
180
SER
176
L
SER
177
n
181
SER
177
L
THR
178
n
182
THR
178
L
LEU
179
n
183
LEU
179
L
THR
180
n
184
THR
180
L
LEU
181
n
185
LEU
181
L
THR
182
n
186
THR
182
L
LYS
183
n
187
LYS
183
L
ASP
184
n
188
ASP
184
L
GLU
185
n
189
GLU
185
L
TYR
186
n
190
TYR
186
L
GLU
187
n
191
GLU
187
L
ARG
188
n
192
ARG
188
L
HIS
189
n
193
HIS
189
L
ASN
190
n
194
ASN
190
L
SER
191
n
195
SER
191
L
TYR
192
n
196
TYR
192
L
THR
193
n
197
THR
193
L
CYS
194
n
198
CYS
194
L
GLU
195
n
199
GLU
195
L
ALA
196
n
200
ALA
196
L
THR
197
n
201
THR
197
L
HIS
198
n
202
HIS
198
L
LYS
199
n
203
LYS
199
L
THR
200
n
204
THR
200
L
SER
201
n
205
SER
201
L
THR
202
n
206
THR
202
L
SER
203
n
207
SER
203
L
PRO
204
n
208
PRO
204
L
ILE
205
n
209
ILE
205
L
VAL
206
n
210
VAL
206
L
LYS
207
n
211
LYS
207
L
SER
208
n
212
SER
208
L
PHE
209
n
213
PHE
209
L
ASN
210
n
214
ASN
210
L
ARG
211
n
215
ARG
211
L
GLN
1
n
1
GLN
1
H
VAL
2
n
2
VAL
2
H
LYS
3
n
3
LYS
3
H
LEU
4
n
4
LEU
4
H
GLN
5
n
5
GLN
5
H
GLU
6
n
6
GLU
6
H
SER
7
n
7
SER
7
H
GLY
8
n
8
GLY
8
H
PRO
9
n
9
PRO
9
H
ALA
10
n
10
ALA
10
H
VAL
11
n
11
VAL
11
H
ILE
12
n
12
ILE
12
H
LYS
13
n
13
LYS
13
H
PRO
14
n
14
PRO
14
H
SER
15
n
15
SER
15
H
GLN
16
n
16
GLN
16
H
SER
17
n
17
SER
17
H
LEU
18
n
18
LEU
18
H
SER
19
n
19
SER
19
H
LEU
20
n
20
LEU
20
H
THR
21
n
21
THR
21
H
CYS
22
n
22
CYS
22
H
ILE
23
n
23
ILE
23
H
VAL
24
n
24
VAL
24
H
SER
25
n
25
SER
25
H
GLY
26
n
26
GLY
26
H
PHE
27
n
27
PHE
27
H
SER
28
n
28
SER
28
H
ILE
29
n
29
ILE
29
H
THR
30
n
30
THR
30
H
ARG
31
n
31
ARG
31
H
THR
32
n
32
THR
32
H
ASN
33
n
33
ASN
33
H
TYR
34
n
34
TYR
34
H
CYS
35
n
35
CYS
35
H
TRP
35
n
36
A
TRP
35
H
HIS
35
n
37
B
HIS
35
H
TRP
36
n
38
TRP
36
H
ILE
37
n
39
ILE
37
H
ARG
38
n
40
ARG
38
H
GLN
39
n
41
GLN
39
H
ALA
40
n
42
ALA
40
H
PRO
41
n
43
PRO
41
H
GLY
42
n
44
GLY
42
H
LYS
43
n
45
LYS
43
H
GLY
44
n
46
GLY
44
H
LEU
45
n
47
LEU
45
H
GLU
46
n
48
GLU
46
H
TRP
47
n
49
TRP
47
H
MET
48
n
50
MET
48
H
GLY
49
n
51
GLY
49
H
ARG
50
n
52
ARG
50
H
ILE
51
n
53
ILE
51
H
CYS
52
n
54
CYS
52
H
TYR
53
n
55
TYR
53
H
GLU
54
n
56
GLU
54
H
GLY
55
n
57
GLY
55
H
SER
56
n
58
SER
56
H
ILE
57
n
59
ILE
57
H
TYR
58
n
60
TYR
58
H
TYR
59
n
61
TYR
59
H
SER
60
n
62
SER
60
H
PRO
61
n
63
PRO
61
H
SER
62
n
64
SER
62
H
ILE
63
n
65
ILE
63
H
LYS
64
n
66
LYS
64
H
SER
65
n
67
SER
65
H
ARG
66
n
68
ARG
66
H
SER
67
n
69
SER
67
H
THR
68
n
70
THR
68
H
ILE
69
n
71
ILE
69
H
SER
70
n
72
SER
70
H
ARG
71
n
73
ARG
71
H
ASP
72
n
74
ASP
72
H
THR
73
n
75
THR
73
H
SER
74
n
76
SER
74
H
LEU
75
n
77
LEU
75
H
ASN
76
n
78
ASN
76
H
LYS
77
n
79
LYS
77
H
PHE
78
n
80
PHE
78
H
PHE
79
n
81
PHE
79
H
ILE
80
n
82
ILE
80
H
GLN
81
n
83
GLN
81
H
LEU
82
n
84
LEU
82
H
ILE
82
n
85
A
ILE
82
H
SER
82
n
86
B
SER
82
H
VAL
82
n
87
C
VAL
82
H
THR
83
n
88
THR
83
H
ASN
84
n
89
ASN
84
H
GLU
85
n
90
GLU
85
H
ASP
86
n
91
ASP
86
H
THR
87
n
92
THR
87
H
ALA
88
n
93
ALA
88
H
MET
89
n
94
MET
89
H
TYR
90
n
95
TYR
90
H
TYR
91
n
96
TYR
91
H
CYS
92
n
97
CYS
92
H
SER
93
n
98
SER
93
H
ARG
94
n
99
ARG
94
H
GLU
95
n
100
GLU
95
H
ASN
96
n
101
ASN
96
H
HIS
97
n
102
HIS
97
H
MET
98
n
103
MET
98
H
TYR
99
n
104
TYR
99
H
GLU
100
n
105
GLU
100
H
THR
100
n
106
A
THR
100
H
TYR
100
n
107
B
TYR
100
H
PHE
100
n
108
C
PHE
100
H
ASP
101
n
109
ASP
101
H
VAL
102
n
110
VAL
102
H
TRP
103
n
111
TRP
103
H
GLY
104
n
112
GLY
104
H
GLN
105
n
113
GLN
105
H
GLY
106
n
114
GLY
106
H
THR
107
n
115
THR
107
H
THR
108
n
116
THR
108
H
VAL
109
n
117
VAL
109
H
THR
110
n
118
THR
110
H
VAL
111
n
119
VAL
111
H
SER
112
n
120
SER
112
H
SER
113
n
121
SER
113
H
ALA
114
n
122
ALA
114
H
LYS
115
n
123
LYS
115
H
THR
116
n
124
THR
116
H
THR
117
n
125
THR
117
H
PRO
118
n
126
PRO
118
H
PRO
119
n
127
PRO
119
H
SER
120
n
128
SER
120
H
VAL
121
n
129
VAL
121
H
TYR
122
n
130
TYR
122
H
PRO
123
n
131
PRO
123
H
LEU
124
n
132
LEU
124
H
ALA
125
n
133
ALA
125
H
PRO
126
n
134
PRO
126
H
GLY
127
n
135
GLY
127
H
SER
128
n
136
SER
128
H
ALA
129
n
137
ALA
129
H
ALA
130
n
138
ALA
130
H
GLN
133
n
139
GLN
133
H
THR
134
n
140
THR
134
H
ASN
135
n
141
ASN
135
H
SER
136
n
142
SER
136
H
MET
137
n
143
MET
137
H
VAL
138
n
144
VAL
138
H
THR
139
n
145
THR
139
H
LEU
140
n
146
LEU
140
H
GLY
141
n
147
GLY
141
H
CYS
142
n
148
CYS
142
H
LEU
143
n
149
LEU
143
H
VAL
144
n
150
VAL
144
H
LYS
145
n
151
LYS
145
H
GLY
146
n
152
GLY
146
H
TYR
147
n
153
TYR
147
H
PHE
148
n
154
PHE
148
H
PRO
149
n
155
PRO
149
H
GLU
150
n
156
GLU
150
H
PRO
151
n
157
PRO
151
H
VAL
152
n
158
VAL
152
H
THR
153
n
159
THR
153
H
VAL
154
n
160
VAL
154
H
THR
156
n
161
THR
156
H
TRP
157
n
162
TRP
157
H
ASN
162
n
163
ASN
162
H
SER
163
n
164
SER
163
H
GLY
164
n
165
GLY
164
H
SER
165
n
166
SER
165
H
LEU
166
n
167
LEU
166
H
SER
167
n
168
SER
167
H
SER
168
n
169
SER
168
H
GLY
169
n
170
GLY
169
H
VAL
171
n
171
VAL
171
H
HIS
172
n
172
HIS
172
H
THR
173
n
173
THR
173
H
PHE
174
n
174
PHE
174
H
PRO
175
n
175
PRO
175
H
ALA
176
n
176
ALA
176
H
VAL
177
n
177
VAL
177
H
LEU
178
n
178
LEU
178
H
GLN
179
n
179
GLN
179
H
SER
180
n
180
SER
180
H
ASP
183
n
181
ASP
183
H
LEU
184
n
182
LEU
184
H
TYR
185
n
183
TYR
185
H
THR
186
n
184
THR
186
H
LEU
187
n
185
LEU
187
H
SER
188
n
186
SER
188
H
SER
189
n
187
SER
189
H
SER
190
n
188
SER
190
H
VAL
191
n
189
VAL
191
H
THR
192
n
190
THR
192
H
VAL
193
n
191
VAL
193
H
PRO
194
n
192
PRO
194
H
SER
195
n
193
SER
195
H
SER
196
n
194
SER
196
H
PRO
198
n
195
PRO
198
H
ARG
199
n
196
ARG
199
H
PRO
200
n
197
PRO
200
H
SER
202
n
198
SER
202
H
GLU
203
n
199
GLU
203
H
THR
204
n
200
THR
204
H
VAL
205
n
201
VAL
205
H
THR
206
n
202
THR
206
H
CYS
208
n
203
CYS
208
H
ASN
209
n
204
ASN
209
H
VAL
210
n
205
VAL
210
H
ALA
211
n
206
ALA
211
H
HIS
212
n
207
HIS
212
H
PRO
213
n
208
PRO
213
H
ALA
214
n
209
ALA
214
H
SER
215
n
210
SER
215
H
SER
216
n
211
SER
216
H
THR
217
n
212
THR
217
H
LYS
218
n
213
LYS
218
H
VAL
219
n
214
VAL
219
H
ASP
220
n
215
ASP
220
H
LYS
221
n
216
LYS
221
H
LYS
222
n
217
LYS
222
H
ILE
223
n
218
ILE
223
H
VAL
224
n
219
VAL
224
H
PRO
225
n
220
PRO
225
H
ARG
226
n
221
ARG
226
H
n
1
308
P
n
2
309
P
n
3
310
P
n
4
311
P
n
5
312
P
n
6
313
P
n
7
314
P
HIS
315
n
8
HIS
315
P
ILE
316
n
9
ILE
316
P
GLY
319
n
10
GLY
319
P
PRO
320
n
11
PRO
320
P
GLY
321
n
12
GLY
321
P
ARG
322
n
13
ARG
322
P
AIB
323
n
14
AIB
323
P
PHE
324
n
15
PHE
324
P
TYR
325
n
16
TYR
325
P
THR
326
n
17
THR
326
P
n
18
327
P
n
19
328
P
n
20
329
P
n
21
330
P
n
22
331
P
n
23
332
P
n
24
333
P
author_and_software_defined_assembly
PISA
3
trimeric
4490
-31
19500
P
AIB
323
ALPHA-AMINOISOBUTYRIC ACID
C
AIB
14
ALA
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
L
O
THR
5
A
O
THR
5
L
N
ARG
24
A
N
ARG
24
L
O
ALA
19
A
O
ALA
19
L
N
ILE
75
A
N
ILE
79
L
O
ASP
70
A
O
ASP
74
L
N
SER
67
A
N
SER
71
L
O
LEU
11
A
O
LEU
11
L
N
LYS
103
A
N
LYS
107
L
O
THR
102
A
O
THR
106
L
N
TYR
86
A
N
TYR
90
L
O
THR
85
A
O
THR
89
L
N
GLN
38
A
N
GLN
42
L
O
TRP
35
A
O
TRP
39
L
N
ILE
48
A
N
ILE
52
L
O
THR
114
A
O
THR
118
L
N
ASN
137
A
N
ASN
141
L
O
ALA
130
A
O
ALA
134
L
N
LEU
181
A
N
LEU
185
L
O
SER
176
A
O
SER
180
L
N
SER
162
A
N
SER
166
L
O
ASN
145
A
O
ASN
149
L
N
THR
197
A
N
THR
201
L
O
TYR
192
A
O
TYR
196
L
N
PHE
209
A
N
PHE
213
H
O
LYS
3
B
O
LYS
3
H
N
SER
25
B
N
SER
25
H
O
LEU
18
B
O
LEU
18
H
N
LEU
82
B
N
LEU
84
H
O
LYS
77
B
O
LYS
79
H
N
ASP
72
B
N
ASP
74
H
O
THR
107
B
O
THR
115
H
N
TYR
90
B
N
TYR
95
H
O
MET
89
B
O
MET
94
H
N
GLN
39
B
N
GLN
41
A
H
O
TRP
35
B
O
TRP
36
H
N
ILE
51
B
N
ILE
53
H
O
ARG
50
B
O
ARG
52
H
N
TYR
58
B
N
TYR
60
H
O
SER
120
B
O
SER
128
H
N
LYS
145
B
N
LYS
151
H
O
VAL
138
B
O
VAL
144
H
N
VAL
193
B
N
VAL
191
H
O
SER
188
B
O
SER
186
H
N
PHE
174
B
N
PHE
174
H
O
THR
153
B
O
THR
159
H
N
ALA
211
B
N
ALA
206
H
O
CYS
208
B
O
CYS
203
H
N
LYS
221
B
N
LYS
216
H
O
ARG
94
B
O
ARG
99
H
N
VAL
102
B
N
VAL
110
1
P
TYR
308
C
TYR
1
1
Y
1
P
ASN
309
C
ASN
2
1
Y
1
P
LYS
310
C
LYS
3
1
Y
1
P
ARG
311
C
ARG
4
1
Y
1
P
LYS
312
C
LYS
5
1
Y
1
P
ARG
313
C
ARG
6
1
Y
1
P
ILE
314
C
ILE
7
1
Y
1
P
THR
327
C
THR
18
1
Y
1
P
LYS
328
C
LYS
19
1
Y
1
P
ASN
329
C
ASN
20
1
Y
1
P
ILE
330
C
ILE
21
1
Y
1
P
ILE
331
C
ILE
22
1
Y
1
P
GLY
332
C
GLY
23
1
Y
1
P
CYS
333
C
CYS
24
1
Y
1
L
TYR
140
0.072
SIDE CHAIN
1
L
ALA
51
70.27
-47.30
1
L
SER
63
-171.77
128.63
1
L
ARG
68
52.73
-87.03
1
L
SER
122
-9.68
-63.10
1
L
SER
127
-79.39
33.84
1
L
ALA
130
-161.53
112.52
1
L
ASN
138
54.17
73.46
1
L
LYS
149
-171.45
134.46
1
L
SER
153
-58.97
103.06
1
L
ARG
188
-92.66
52.44
1
L
HIS
189
-162.98
-169.58
1
L
ASN
190
-155.47
-29.04
1
H
ASN
33
88.79
-46.79
1
H
GLU
54
-88.26
39.29
1
H
ASN
76
63.05
66.02
1
H
ALA
88
-176.71
-174.81
1
H
SER
128
69.32
-15.43
1
H
ASN
135
61.59
-156.72
1
H
SER
163
38.71
62.43
1
H
SER
180
54.97
80.00
1
H
PRO
198
-51.39
24.60
1
H
ARG
199
174.60
124.06
1
H
ALA
214
-62.07
18.33
1
H
SER
215
-169.07
17.14
1
H
SER
216
44.78
19.24
30.
0.22
0.22
2.8
12.0
18955
91.
1
0.0
MOLECULAR REPLACEMENT
1ACY
2.8
12.0
0
3443
0
0
3443
2.8
1AI1
19192
0.08
1
92.
2.8
2.9
90.
data reduction
MOSFLM
model building
X-PLOR
3.1
refinement
X-PLOR
3.1
phasing
X-PLOR
3.1
HIV-1 V3 LOOP MIMIC
1
N
N
2
N
N
3
N
N
L
ALA
80
A
ALA
84
HELX_P
L
ASP
82
A
ASP
86
5
1
3
L
SER
122
A
SER
126
HELX_P
L
THR
126
A
THR
130
1
2
5
L
LYS
183
A
LYS
187
HELX_P
L
GLU
187
A
GLU
191
1
3
5
H
PRO
61
B
PRO
63
HELX_P
H
ARG
66
B
ARG
68
1
4
6
H
ASN
84
B
ASN
89
HELX_P
H
ASP
86
B
ASP
91
5
5
3
H
PRO
213
B
PRO
208
HELX_P
H
SER
215
B
SER
210
5
6
3
disulf
2.030
L
CYS
23
A
SG
CYS
23
1_555
L
CYS
88
A
SG
CYS
92
1_555
disulf
2.018
L
CYS
134
A
SG
CYS
138
1_555
L
CYS
194
A
SG
CYS
198
1_555
disulf
2.041
H
CYS
22
B
SG
CYS
22
1_555
H
CYS
92
B
SG
CYS
97
1_555
disulf
2.022
H
CYS
35
B
SG
CYS
35
1_555
H
CYS
52
B
SG
CYS
54
1_555
disulf
2.013
H
CYS
142
B
SG
CYS
148
1_555
H
CYS
208
B
SG
CYS
203
1_555
covale
1.329
both
P
ARG
322
C
C
ARG
13
1_555
P
AIB
323
C
N
AIB
14
1_555
covale
1.329
both
P
AIB
323
C
C
AIB
14
1_555
P
PHE
324
C
N
PHE
15
1_555
COMPLEX (ANTIBODY/PEPTIDE)
COMPLEX (ANTIBODY-PEPTIDE), ANTIBODY, CONSTRAINED HIV-1 V3 LOOP PEPTIDE, IMMUNOGLOBULIN, COMPLEX (ANTIBODY-PEPTIDE) complex
L
SER
7
A
SER
7
1
L
PRO
8
A
PRO
8
-0.44
L
ASP
76
A
ASP
80
1
L
PRO
77
A
PRO
81
0.09
L
ASP
94
A
ASP
98
1
L
PRO
95
A
PRO
99
0.11
L
TYR
140
A
TYR
144
1
L
PRO
141
A
PRO
145
-0.15
H
PHE
148
B
PHE
154
1
H
PRO
149
B
PRO
155
0.15
H
GLU
150
B
GLU
156
1
H
PRO
151
B
PRO
157
-0.31
H
ARG
199
B
ARG
196
1
H
PRO
200
B
PRO
197
-0.15
CAB75889
EMBL
1
1
AJ272393
NIVLTQSPASLAVSLGQRATISCRANESVYSYGDSFMHWYQQKPGQPPKLLIYLASNLASGVPARFSGSGSRTDFTLTID
PVEADDAATYYCQQNNEDPWTFGGGTKLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQ
NGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNEC
GC1_MOUSE
UNP
2
1
P01868
AKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSPRPSETV
TCNVAHPASSTKVDKKIVPRDCGCKPCICTVPEVSSVFIFPPKPKDVLTITLTPKVTCVVVDISKDDPEVQFSWFVDDVE
VHTAQTQPREEQFNSTFRSVSELPIMHQDWLNGKEFKCRVNSAAFPAPIEKTISKTKGRPKAPQVYTIPPPKEQMAKDKV
SLTCMITDFFPEDITVEWQWNGQPAENYKNTQPIMNTNGSYFVYSKLNVQKSNWEAGNTFTCSVLHEGLHNHHTEKSLSH
SPGK
ENV_HV1MN
UNP
3
1
P05877
MRVKGIRRNYQHWWGWGTMLLGLLMICSATEKLWVTVYYGVPVWKEATTTLFCASDAKAYDTEVHNVWATQACVPTDPNP
QEVELVNVTENFNMWKNNMVEQMHEDIISLWDQSLKPCVKLTPLCVTLNCTDLRNTTNTNNSTANNNSNSEGTIKGGEMK
NCSFNITTSIRDKMQKEYALLYKLDIVSIDNDSTSYRLISCNTSVITQACPKISFEPIPIHYCAPAGFAILKCNDKKFSG
KGSCKNVSTVQCTHGIRPVVSTQLLLNGSLAEEEVVIRSENFTDNAKTIIVHLNESVQINCTRPNYNKRKRIHIGPGRAF
YTTKNIIGTIRQAHCNISRAKWNDTLRQIVSKLKEQFKNKTIVFNQSSGGDPEIVMHSFNCGGEFFYCNTSPLFNSTWNG
NNTWNNTTGSNNNITLQCKIKQIINMWQEVGKAMYAPPIEGQIRCSSNITGLLLTRDGGKDTDTNDTEIFRPGGGDMRDN
WRSELYKYKVVTIEPLGVAPTKAKRRVVQREKRAAIGALFLGFLGAAGSTMGAASVTLTVQARLLLSGIVQQQNNLLRAI
EAQQHMLQLTVWGIKQLQARVLAVERYLKDQQLLGFWGCSGKLICTTTVPWNASWSNKSLDDIWNNMTWMQWEREIDNYT
SLIYSLLEKSQTQQEKNEQELLELDKWASLWNWFDITNWLWYIKIFIMIVGGLVGLRIVFAVLSIVNRVRQGYSPLSLQT
RPPVPRGPDRPEGIEEEGGERDRDTSGRLVHGFLAIIWVDLRSLFLFSYHHRDLLLIAARIVELLGRRGWEVLKYWWNLL
QYWSQELKSSAVSLLNATAIAVAEGTDRVIEVLQRAGRAILHIPTRIRQGLERALL
2
215
1AI1
2
211
AJ272393
L
1
2
215
1
100
1AI1
114
226
P01868
H
2
122
221
306
328
1AI1
308
332
P05877
P
3
1
23
1
LEU
conflict
MET
4
1AI1
L
AJ272393
EMBL
4
4
1
ALA
conflict
VAL
12
1AI1
L
AJ272393
EMBL
12
12
1
ASN
conflict
SER
26
1AI1
L
AJ272393
EMBL
26
26
1
TYR
conflict
ASP
27
1AI1
C
L
AJ272393
EMBL
30
30
1
ASP
conflict
LYS
30
1AI1
L
AJ272393
EMBL
34
34
1
LEU
conflict
VAL
46
1AI1
L
AJ272393
EMBL
50
50
1
LEU
conflict
ILE
50
1AI1
L
AJ272393
EMBL
54
54
1
ALA
conflict
GLU
55
1AI1
L
AJ272393
EMBL
59
59
1
TRP
conflict
PRO
96
1AI1
L
AJ272393
EMBL
100
100
1
GLY
conflict
ALA
100
1AI1
L
AJ272393
EMBL
104
104
1
ILE
conflict
MET
106
1AI1
L
AJ272393
EMBL
110
110
1
LYS
conflict
ARG
107
1AI1
L
AJ272393
EMBL
111
111
3
ALA
conflict
AIB
323
1AI1
P
P05877
UNP
319
14
4
5
4
3
4
5
4
3
2
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
L
MET
4
A
MET
4
L
SER
7
A
SER
7
L
ALA
19
A
ALA
19
L
ALA
25
A
ALA
25
L
ASP
70
A
ASP
74
L
ILE
75
A
ILE
79
L
PHE
62
A
PHE
66
L
SER
67
A
SER
71
L
SER
10
A
SER
10
L
SER
14
A
SER
14
L
THR
102
A
THR
106
L
ARG
107
A
ARG
111
L
ALA
84
A
ALA
88
L
GLN
90
A
GLN
94
L
MET
33
A
MET
37
L
GLN
38
A
GLN
42
L
LYS
45
A
LYS
49
L
ILE
48
A
ILE
52
L
THR
114
A
THR
118
L
PHE
118
A
PHE
122
L
ALA
130
A
ALA
134
L
ASN
137
A
ASN
141
L
MET
175
A
MET
179
L
LEU
181
A
LEU
185
L
VAL
159
A
VAL
163
L
TRP
163
A
TRP
167
L
ASN
145
A
ASN
149
L
ILE
150
A
ILE
154
L
SER
191
A
SER
195
L
THR
197
A
THR
201
L
ILE
205
A
ILE
209
L
ASN
210
A
ASN
214
H
LYS
3
B
LYS
3
H
SER
7
B
SER
7
H
LEU
18
B
LEU
18
H
SER
25
B
SER
25
H
LYS
77
B
LYS
79
H
LEU
82
B
LEU
84
H
SER
67
B
SER
69
H
ASP
72
B
ASP
74
H
THR
107
B
THR
115
H
VAL
109
B
VAL
117
H
ALA
88
B
ALA
93
H
ASN
96
B
ASN
101
H
TYR
34
B
TYR
34
H
ALA
40
B
ALA
42
H
LEU
45
B
LEU
47
H
CYS
52
B
CYS
54
H
ILE
57
B
ILE
59
H
TYR
59
B
TYR
61
H
SER
120
B
SER
128
H
LEU
124
B
LEU
132
H
MET
137
B
MET
143
H
TYR
147
B
TYR
153
H
TYR
185
B
TYR
183
H
PRO
194
B
PRO
192
H
VAL
171
B
VAL
171
H
PHE
174
B
PHE
174
H
THR
153
B
THR
159
H
TRP
157
B
TRP
162
H
THR
206
B
THR
202
H
HIS
212
B
HIS
207
H
THR
217
B
THR
212
H
LYS
222
B
LYS
217
H
SER
93
B
SER
98
H
GLU
95
B
GLU
100
H
PHE
100
B
PHE
108
H
TRP
103
B
TRP
111
C
20
C 2 2 21