0.020202 0.011664 0.000000 0.000000 0.023327 0.000000 0.000000 0.000000 0.018083 0.00000 0.00000 0.00000 Chan, D.C. Fass, D. Berger, J.M. Kim, P.S. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 6 90.00 90.00 120.00 49.500 49.500 55.300 C2 H4 O 44.053 ACETYL GROUP non-polymer C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking US Cell(Cambridge,Mass.) CELLB5 0998 0092-8674 89 263 273 10.1016/S0092-8674(00)80205-6 9108481 Core structure of gp41 from the HIV envelope glycoprotein. 1997 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 100 1 MIRRORS IMAGE PLATE 1997-03 RIGAKU RAXIS IIC M x-ray 1 1.5418 1.0 1.5418 ROTATING ANODE RIGAKU RUH2R N36 AND C34 ARE SYNTHETIC PEPTIDES 4152.843 HIV-1 GP41 GLYCOPROTEIN PROTEASE-RESISTANT CORE 1 man polymer N36 AND C34 ARE SYNTHETIC PEPTIDES 4277.615 HIV-1 GP41 GLYCOPROTEIN PROTEASE-RESISTANT CORE 1 man polymer 18.015 water 43 nat water no yes (ACE)SGIVQQQNNLLRAIEAQQHLLQLTVWGIKQLQARIL XSGIVQQQNNLLRAIEAQQHLLQLTVWGIKQLQARIL N polypeptide(L) no yes (ACE)WMEWDREINNYTSLIHSLIEESQNQQEKNEQELL XWMEWDREINNYTSLIHSLIEESQNQQEKNEQELL C polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Lentivirus Human immunodeficiency virus 1 HXB2 Escherichia sample VIRAL MEMBRANE GP41 11706 HIV-1 M:B_HXB2R GP41 562 Escherichia coli Lentivirus Human immunodeficiency virus 1 HXB2 Escherichia sample VIRAL MEMBRANE GP41 11706 HIV-1 M:B_HXB2R GP41 562 Escherichia coli 1 2.32 46. DATA AT NSLS USED MAD METHODS. DATA COLLECTED ON AN OSMIUM-SOAK CRYSTAL AT WAVELENGTHS 1.1398, 1.1396, 1.1344, AND 1.1406 ANGSTROMS. VAPOR DIFFUSION, SITTING DROP 6.0 A 10 MG/ML STOCK WAS DILUTED 1:1 IN A SITTING DROP WITH 80 MM NH4CL, 20% PEG200, AND 50% ISOPROPANOL, AND THEN ALLOWED TO EQUILIBRATE AGAINST 80 MM NH4CL, 20% PEG200, AND 30% ISOPROPANOL., pH 6.0, vapor diffusion - sitting drop repository Initial release Version format compliance Derived calculations Version format compliance 1 0 1997-06-16 1 1 2008-03-24 1 2 2011-07-13 Y 1997-04-20 REL HOH water HOH 13 3 HOH HOH 13 N HOH 17 3 HOH HOH 17 N HOH 20 3 HOH HOH 20 N HOH 21 3 HOH HOH 21 N HOH 22 3 HOH HOH 22 N HOH 29 3 HOH HOH 29 N HOH 30 3 HOH HOH 30 N HOH 31 3 HOH HOH 31 N HOH 32 3 HOH HOH 32 N HOH 33 3 HOH HOH 33 N HOH 34 3 HOH HOH 34 N HOH 35 3 HOH HOH 35 N HOH 36 3 HOH HOH 36 N HOH 37 3 HOH HOH 37 N HOH 38 3 HOH HOH 38 N HOH 40 3 HOH HOH 40 N HOH 1 3 HOH HOH 1 C HOH 2 3 HOH HOH 2 C HOH 3 3 HOH HOH 3 C HOH 4 3 HOH HOH 4 C HOH 5 3 HOH HOH 5 C HOH 6 3 HOH HOH 6 C HOH 7 3 HOH HOH 7 C HOH 8 3 HOH HOH 8 C HOH 9 3 HOH HOH 9 C HOH 10 3 HOH HOH 10 C HOH 11 3 HOH HOH 11 C HOH 12 3 HOH HOH 12 C HOH 14 3 HOH HOH 14 C HOH 15 3 HOH HOH 15 C HOH 16 3 HOH HOH 16 C HOH 18 3 HOH HOH 18 C HOH 19 3 HOH HOH 19 C HOH 23 3 HOH HOH 23 C HOH 24 3 HOH HOH 24 C HOH 25 3 HOH HOH 25 C HOH 26 3 HOH HOH 26 C HOH 27 3 HOH HOH 27 C HOH 28 3 HOH HOH 28 C HOH 39 3 HOH HOH 39 C HOH 41 3 HOH HOH 41 C HOH 42 3 HOH HOH 42 C HOH 43 3 HOH HOH 43 C ACE 0 n 1 ACE 545 N SER 546 n 2 SER 546 N GLY 547 n 3 GLY 547 N ILE 548 n 4 ILE 548 N VAL 549 n 5 VAL 549 N GLN 550 n 6 GLN 550 N GLN 551 n 7 GLN 551 N GLN 552 n 8 GLN 552 N ASN 553 n 9 ASN 553 N ASN 554 n 10 ASN 554 N LEU 555 n 11 LEU 555 N LEU 556 n 12 LEU 556 N ARG 557 n 13 ARG 557 N ALA 558 n 14 ALA 558 N ILE 559 n 15 ILE 559 N GLU 560 n 16 GLU 560 N ALA 561 n 17 ALA 561 N GLN 562 n 18 GLN 562 N GLN 563 n 19 GLN 563 N HIS 564 n 20 HIS 564 N LEU 565 n 21 LEU 565 N LEU 566 n 22 LEU 566 N GLN 567 n 23 GLN 567 N LEU 568 n 24 LEU 568 N THR 569 n 25 THR 569 N VAL 570 n 26 VAL 570 N TRP 571 n 27 TRP 571 N GLY 572 n 28 GLY 572 N ILE 573 n 29 ILE 573 N LYS 574 n 30 LYS 574 N GLN 575 n 31 GLN 575 N LEU 576 n 32 LEU 576 N GLN 577 n 33 GLN 577 N ALA 578 n 34 ALA 578 N ARG 579 n 35 ARG 579 N ILE 580 n 36 ILE 580 N LEU 581 n 37 LEU 581 N ACE 0 n 1 ACE 627 C TRP 628 n 2 TRP 628 C MET 629 n 3 MET 629 C GLU 630 n 4 GLU 630 C TRP 631 n 5 TRP 631 C ASP 632 n 6 ASP 632 C ARG 633 n 7 ARG 633 C GLU 634 n 8 GLU 634 C ILE 635 n 9 ILE 635 C ASN 636 n 10 ASN 636 C ASN 637 n 11 ASN 637 C TYR 638 n 12 TYR 638 C THR 639 n 13 THR 639 C SER 640 n 14 SER 640 C LEU 641 n 15 LEU 641 C ILE 642 n 16 ILE 642 C HIS 643 n 17 HIS 643 C SER 644 n 18 SER 644 C LEU 645 n 19 LEU 645 C ILE 646 n 20 ILE 646 C GLU 647 n 21 GLU 647 C GLU 648 n 22 GLU 648 C SER 649 n 23 SER 649 C GLN 650 n 24 GLN 650 C ASN 651 n 25 ASN 651 C GLN 652 n 26 GLN 652 C GLN 653 n 27 GLN 653 C GLU 654 n 28 GLU 654 C LYS 655 n 29 LYS 655 C ASN 656 n 30 ASN 656 C GLU 657 n 31 GLU 657 C GLN 658 n 32 GLN 658 C GLU 659 n 33 GLU 659 C LEU 660 n 34 LEU 660 C LEU 661 n 35 LEU 661 C author_and_software_defined_assembly PISA,PQS 6 hexameric 12190 -98 10400 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 -0.5000000000 -0.8660254038 0.0000000000 0.8660254038 -0.5000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 2_655 -y+1,x-y,z crystal symmetry operation 49.5000000000 0.0000000000 0.0000000000 -0.5000000000 0.8660254038 0.0000000000 -0.8660254038 -0.5000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 3_665 -x+y+1,-x+1,z crystal symmetry operation 24.7500000000 42.8682574873 0.0000000000 1 5.84 0.80 106.30 112.14 N N N CD1 CG CD2 TRP TRP TRP 571 571 571 N 1 -5.83 0.80 107.30 101.47 N N N CE2 CD2 CG TRP TRP TRP 571 571 571 N 1 6.04 0.90 133.90 139.94 N N N CG CD2 CE3 TRP TRP TRP 571 571 571 N 1 3.54 0.50 120.30 123.84 N N N NE CZ NH2 ARG ARG ARG 579 579 579 N 1 6.83 0.80 106.30 113.13 C C C CD1 CG CD2 TRP TRP TRP 628 628 628 N 1 -5.67 0.80 107.30 101.63 C C C CE2 CD2 CG TRP TRP TRP 628 628 628 N 1 7.40 0.80 106.30 113.70 C C C CD1 CG CD2 TRP TRP TRP 631 631 631 N 1 -6.12 1.00 110.10 103.98 C C C CG CD1 NE1 TRP TRP TRP 631 631 631 N 1 -5.82 0.80 107.30 101.48 C C C CE2 CD2 CG TRP TRP TRP 631 631 631 N 1 N N NE2 CD2 HIS HIS 564 564 -0.082 0.011 1.373 1.291 N 1 C C NE2 CD2 HIS HIS 643 643 -0.085 0.011 1.373 1.288 N 1 C C CB OG SER SER 644 644 0.083 0.013 1.418 1.501 N 0.2660000 0.2380000 0.2380000 2.0 12.0 371 5683 7.12 96.5 RANDOM 100000000. 1 THROUGHOUT 2.0 MAD 2.0 12.0 43 637 0 0 594 0.014 2.742 2.0 20.0 1AIK 5287 1.5 0.0540000 1 18.4 96.5 2.00 2.07 5.4 0.2630000 1 98.9 model building X-PLOR 3.851 refinement X-PLOR 3.851 data reduction DENZO data scaling SCALEPACK phasing X-PLOR 3.851 HIV-1 GP41 GLYCOPROTEIN HIV GP41 CORE STRUCTURE 1 N N 2 N N 3 N N 3 N N N GLY 547 A GLY 3 HELX_P N ALA 578 A ALA 34 1 1 32 C MET 629 B MET 3 HELX_P C GLU 659 B GLU 33 1 2 31 covale 1.330 N ACE 545 A C ACE 1 1_555 N SER 546 A N SER 2 1_555 covale 1.328 C ACE 627 B C ACE 1 1_555 C TRP 628 B N TRP 2 1_555 VIRAL PROTEIN HIV, GP41, ENVELOPE GLYCOPROTEIN, RETROVIRUS, Viral protein ENV_HV1H2 UNP 1 1 P04578 MRVKEKYQHLWRWGWKWGIMLLGILMICSATENLWVTVYYGVPVWKEATTTLFCASDAKAYDTEVHNVCATHACVPTDPN PQEVILVNVTENFDMWKNDMVEQMHEDIISLWDQSLKPCVKLTPLCVNLKCTDLKNDTNTNSSNGRMIMEKGEIKNCSFN ISTSIRNKVQKEYAFFYKLDIRPIDNTTYRLISCNTSVITQACPKVSFEPIPIHYCAPAGFAILKCNDKTFNGTGPCTNV STVQCTHGIRPVVSTQLLLNGSLAEEEGVIRSANFTDNAKTIIVQLNTSVEINCTRPNNNTRKSIRIQRGPGRAFVTIGK IGNMRQAHCNISRAKWMSTLKQIASKLREQFGNNKTVIFKQSSGGDPEIVTHSFNCGGEFFYCNSTQLFNSTWFNSTWST EGSNNTEGSDTITLPCRIKQFINMWQEVGKAMYAPPISGQIRCSSNITGLLLTRDGGKNTNESEVFRPGGGDMRDNWRSE LYKYKVVKIETLGVAPTKAKRRVVQREKRAVGIGALFLGFLGAAGSTMGAASMTLTVQARQLLSGIVQQQNNLLRAIEAQ QHLLQLTVWGIKQLQARILAVERYLKDQQLLGIWGCSGKLICTTAVPWNASWSNKSLEQFWNNMTWMEWDREINNYTSLI HSLIDESQNQQEKNEQELLELDKWASLWNWFNITNWLWYIKIFIMIVGGLVGLRIVFAVLSIVNRVRQGYSPLSFQTHLP NRGGPDRPEGIEEEGGERDRDRSVRLVNGSLALIWDDLRSLCLFSYHRLRDLLLIVTRIVELLGRRGWEALKYWWNLLQY WSQELKNSAVSLLNATAIAVAEGTDRVIEVVQGAYRAIRHIPRRIRQGLERIL ENV_HV1H2 UNP 2 1 P04578 MRVKEKYQHLWRWGWRWGTMLLGMLMICSATEKLWVTVYFGVPVWKEATTTLFCASDAKAYDTEVHNVWATHACVPTDPN PQEVVLVNVTENFNMWKNDMVEQMHEDIISLWDQSLKPCVKLTPLCVSLKCTDLKNDTNTNSSSGRMIMEKGEIKNCSFN ISTSKRGKVQKEYAFFYKLDIIPIDNDTTSYTLTSCNTSVITQACPKVSFEPIPIHYCAPAGFAILKCNNKTFNGTGPCT NVSTVQCTHGIRPVVSTQLLLNGSLAEEEVVIRSVNFTDNAKTIIVQLDTSVEINCTRPNNNTRKKIRIQRGPGRAFVTI GKIGNMRQAHCNISRAKWNATLKQIDSKLREQFGNNKTIIFKQSSGGDPEIVTHSFNCGGEFFYCNSTQLFNSTWSTKGS NNTEGSDTITLPCRIKQIINMWQEVGKAMYAPPISGQIRCSSNITGLLLTRDGGNSNNESEIFRPGGGDMRDNWRSELYK YKVVKIEPLGVAPTKAKRRVVQREKRAVGIGALFLGFLGAAGSTMGAASMTLTVQARQLLSGIVQQQNNLLRAIEGQQHL LQLTVWGIKQLQARILAVERYLKDQQLLGIWGCSGKLICTTAVPWNASWSNKSLEQIWNNMTWMEWDREINNYTSLIHSL IEESQNQQEKNEQELLELDKWASLWNWFNITNWLWYIKLFIMIVGGLVGLRIVFAVLSIVNRVRQGYSPLSFQTHLPNPR GPDRPEGIEEEGGERDRDRSIRLVNGSLALIWDDLRSLCLFSYHRLRDLLLIVTRIVELLGRRGWEALKYWWNLLQYWSQ ELKNSAVNLLNATAIAVAEGTDRVIELVQAAYRAIRHIPRRIRQGLERILL 544 579 1AIK 546 581 P04578 N 1 2 37 623 656 1AIK 628 661 P04578 C 2 2 35 150 P 3 2 1