0.020202
0.011664
0.000000
0.000000
0.023327
0.000000
0.000000
0.000000
0.018083
0.00000
0.00000
0.00000
Chan, D.C.
Fass, D.
Berger, J.M.
Kim, P.S.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
6
90.00
90.00
120.00
49.500
49.500
55.300
C2 H4 O
44.053
ACETYL GROUP
non-polymer
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
US
Cell(Cambridge,Mass.)
CELLB5
0998
0092-8674
89
263
273
10.1016/S0092-8674(00)80205-6
9108481
Core structure of gp41 from the HIV envelope glycoprotein.
1997
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
MIRRORS
IMAGE PLATE
1997-03
RIGAKU RAXIS IIC
M
x-ray
1
1.5418
1.0
1.5418
ROTATING ANODE
RIGAKU RUH2R
N36 AND C34 ARE SYNTHETIC PEPTIDES
4152.843
HIV-1 GP41 GLYCOPROTEIN
PROTEASE-RESISTANT CORE
1
man
polymer
N36 AND C34 ARE SYNTHETIC PEPTIDES
4277.615
HIV-1 GP41 GLYCOPROTEIN
PROTEASE-RESISTANT CORE
1
man
polymer
18.015
water
43
nat
water
no
yes
(ACE)SGIVQQQNNLLRAIEAQQHLLQLTVWGIKQLQARIL
XSGIVQQQNNLLRAIEAQQHLLQLTVWGIKQLQARIL
N
polypeptide(L)
no
yes
(ACE)WMEWDREINNYTSLIHSLIEESQNQQEKNEQELL
XWMEWDREINNYTSLIHSLIEESQNQQEKNEQELL
C
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Lentivirus
Human immunodeficiency virus 1
HXB2
Escherichia
sample
VIRAL MEMBRANE
GP41
11706
HIV-1 M:B_HXB2R
GP41
562
Escherichia coli
Lentivirus
Human immunodeficiency virus 1
HXB2
Escherichia
sample
VIRAL MEMBRANE
GP41
11706
HIV-1 M:B_HXB2R
GP41
562
Escherichia coli
1
2.32
46.
DATA AT NSLS USED MAD METHODS. DATA COLLECTED ON AN OSMIUM-SOAK CRYSTAL AT WAVELENGTHS 1.1398, 1.1396, 1.1344, AND 1.1406 ANGSTROMS.
VAPOR DIFFUSION, SITTING DROP
6.0
A 10 MG/ML STOCK WAS DILUTED 1:1 IN A SITTING DROP WITH 80 MM NH4CL, 20% PEG200, AND 50% ISOPROPANOL, AND THEN ALLOWED TO EQUILIBRATE AGAINST 80 MM NH4CL, 20% PEG200, AND 30% ISOPROPANOL., pH 6.0, vapor diffusion - sitting drop
repository
Initial release
Version format compliance
Derived calculations
Version format compliance
1
0
1997-06-16
1
1
2008-03-24
1
2
2011-07-13
Y
1997-04-20
REL
HOH
water
HOH
13
3
HOH
HOH
13
N
HOH
17
3
HOH
HOH
17
N
HOH
20
3
HOH
HOH
20
N
HOH
21
3
HOH
HOH
21
N
HOH
22
3
HOH
HOH
22
N
HOH
29
3
HOH
HOH
29
N
HOH
30
3
HOH
HOH
30
N
HOH
31
3
HOH
HOH
31
N
HOH
32
3
HOH
HOH
32
N
HOH
33
3
HOH
HOH
33
N
HOH
34
3
HOH
HOH
34
N
HOH
35
3
HOH
HOH
35
N
HOH
36
3
HOH
HOH
36
N
HOH
37
3
HOH
HOH
37
N
HOH
38
3
HOH
HOH
38
N
HOH
40
3
HOH
HOH
40
N
HOH
1
3
HOH
HOH
1
C
HOH
2
3
HOH
HOH
2
C
HOH
3
3
HOH
HOH
3
C
HOH
4
3
HOH
HOH
4
C
HOH
5
3
HOH
HOH
5
C
HOH
6
3
HOH
HOH
6
C
HOH
7
3
HOH
HOH
7
C
HOH
8
3
HOH
HOH
8
C
HOH
9
3
HOH
HOH
9
C
HOH
10
3
HOH
HOH
10
C
HOH
11
3
HOH
HOH
11
C
HOH
12
3
HOH
HOH
12
C
HOH
14
3
HOH
HOH
14
C
HOH
15
3
HOH
HOH
15
C
HOH
16
3
HOH
HOH
16
C
HOH
18
3
HOH
HOH
18
C
HOH
19
3
HOH
HOH
19
C
HOH
23
3
HOH
HOH
23
C
HOH
24
3
HOH
HOH
24
C
HOH
25
3
HOH
HOH
25
C
HOH
26
3
HOH
HOH
26
C
HOH
27
3
HOH
HOH
27
C
HOH
28
3
HOH
HOH
28
C
HOH
39
3
HOH
HOH
39
C
HOH
41
3
HOH
HOH
41
C
HOH
42
3
HOH
HOH
42
C
HOH
43
3
HOH
HOH
43
C
ACE
0
n
1
ACE
545
N
SER
546
n
2
SER
546
N
GLY
547
n
3
GLY
547
N
ILE
548
n
4
ILE
548
N
VAL
549
n
5
VAL
549
N
GLN
550
n
6
GLN
550
N
GLN
551
n
7
GLN
551
N
GLN
552
n
8
GLN
552
N
ASN
553
n
9
ASN
553
N
ASN
554
n
10
ASN
554
N
LEU
555
n
11
LEU
555
N
LEU
556
n
12
LEU
556
N
ARG
557
n
13
ARG
557
N
ALA
558
n
14
ALA
558
N
ILE
559
n
15
ILE
559
N
GLU
560
n
16
GLU
560
N
ALA
561
n
17
ALA
561
N
GLN
562
n
18
GLN
562
N
GLN
563
n
19
GLN
563
N
HIS
564
n
20
HIS
564
N
LEU
565
n
21
LEU
565
N
LEU
566
n
22
LEU
566
N
GLN
567
n
23
GLN
567
N
LEU
568
n
24
LEU
568
N
THR
569
n
25
THR
569
N
VAL
570
n
26
VAL
570
N
TRP
571
n
27
TRP
571
N
GLY
572
n
28
GLY
572
N
ILE
573
n
29
ILE
573
N
LYS
574
n
30
LYS
574
N
GLN
575
n
31
GLN
575
N
LEU
576
n
32
LEU
576
N
GLN
577
n
33
GLN
577
N
ALA
578
n
34
ALA
578
N
ARG
579
n
35
ARG
579
N
ILE
580
n
36
ILE
580
N
LEU
581
n
37
LEU
581
N
ACE
0
n
1
ACE
627
C
TRP
628
n
2
TRP
628
C
MET
629
n
3
MET
629
C
GLU
630
n
4
GLU
630
C
TRP
631
n
5
TRP
631
C
ASP
632
n
6
ASP
632
C
ARG
633
n
7
ARG
633
C
GLU
634
n
8
GLU
634
C
ILE
635
n
9
ILE
635
C
ASN
636
n
10
ASN
636
C
ASN
637
n
11
ASN
637
C
TYR
638
n
12
TYR
638
C
THR
639
n
13
THR
639
C
SER
640
n
14
SER
640
C
LEU
641
n
15
LEU
641
C
ILE
642
n
16
ILE
642
C
HIS
643
n
17
HIS
643
C
SER
644
n
18
SER
644
C
LEU
645
n
19
LEU
645
C
ILE
646
n
20
ILE
646
C
GLU
647
n
21
GLU
647
C
GLU
648
n
22
GLU
648
C
SER
649
n
23
SER
649
C
GLN
650
n
24
GLN
650
C
ASN
651
n
25
ASN
651
C
GLN
652
n
26
GLN
652
C
GLN
653
n
27
GLN
653
C
GLU
654
n
28
GLU
654
C
LYS
655
n
29
LYS
655
C
ASN
656
n
30
ASN
656
C
GLU
657
n
31
GLU
657
C
GLN
658
n
32
GLN
658
C
GLU
659
n
33
GLU
659
C
LEU
660
n
34
LEU
660
C
LEU
661
n
35
LEU
661
C
author_and_software_defined_assembly
PISA,PQS
6
hexameric
12190
-98
10400
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
-0.5000000000
-0.8660254038
0.0000000000
0.8660254038
-0.5000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
2_655
-y+1,x-y,z
crystal symmetry operation
49.5000000000
0.0000000000
0.0000000000
-0.5000000000
0.8660254038
0.0000000000
-0.8660254038
-0.5000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
3_665
-x+y+1,-x+1,z
crystal symmetry operation
24.7500000000
42.8682574873
0.0000000000
1
5.84
0.80
106.30
112.14
N
N
N
CD1
CG
CD2
TRP
TRP
TRP
571
571
571
N
1
-5.83
0.80
107.30
101.47
N
N
N
CE2
CD2
CG
TRP
TRP
TRP
571
571
571
N
1
6.04
0.90
133.90
139.94
N
N
N
CG
CD2
CE3
TRP
TRP
TRP
571
571
571
N
1
3.54
0.50
120.30
123.84
N
N
N
NE
CZ
NH2
ARG
ARG
ARG
579
579
579
N
1
6.83
0.80
106.30
113.13
C
C
C
CD1
CG
CD2
TRP
TRP
TRP
628
628
628
N
1
-5.67
0.80
107.30
101.63
C
C
C
CE2
CD2
CG
TRP
TRP
TRP
628
628
628
N
1
7.40
0.80
106.30
113.70
C
C
C
CD1
CG
CD2
TRP
TRP
TRP
631
631
631
N
1
-6.12
1.00
110.10
103.98
C
C
C
CG
CD1
NE1
TRP
TRP
TRP
631
631
631
N
1
-5.82
0.80
107.30
101.48
C
C
C
CE2
CD2
CG
TRP
TRP
TRP
631
631
631
N
1
N
N
NE2
CD2
HIS
HIS
564
564
-0.082
0.011
1.373
1.291
N
1
C
C
NE2
CD2
HIS
HIS
643
643
-0.085
0.011
1.373
1.288
N
1
C
C
CB
OG
SER
SER
644
644
0.083
0.013
1.418
1.501
N
0.2660000
0.2380000
0.2380000
2.0
12.0
371
5683
7.12
96.5
RANDOM
100000000.
1
THROUGHOUT
2.0
MAD
2.0
12.0
43
637
0
0
594
0.014
2.742
2.0
20.0
1AIK
5287
1.5
0.0540000
1
18.4
96.5
2.00
2.07
5.4
0.2630000
1
98.9
model building
X-PLOR
3.851
refinement
X-PLOR
3.851
data reduction
DENZO
data scaling
SCALEPACK
phasing
X-PLOR
3.851
HIV-1 GP41 GLYCOPROTEIN
HIV GP41 CORE STRUCTURE
1
N
N
2
N
N
3
N
N
3
N
N
N
GLY
547
A
GLY
3
HELX_P
N
ALA
578
A
ALA
34
1
1
32
C
MET
629
B
MET
3
HELX_P
C
GLU
659
B
GLU
33
1
2
31
covale
1.330
N
ACE
545
A
C
ACE
1
1_555
N
SER
546
A
N
SER
2
1_555
covale
1.328
C
ACE
627
B
C
ACE
1
1_555
C
TRP
628
B
N
TRP
2
1_555
VIRAL PROTEIN
HIV, GP41, ENVELOPE GLYCOPROTEIN, RETROVIRUS, Viral protein
ENV_HV1H2
UNP
1
1
P04578
MRVKEKYQHLWRWGWKWGIMLLGILMICSATENLWVTVYYGVPVWKEATTTLFCASDAKAYDTEVHNVCATHACVPTDPN
PQEVILVNVTENFDMWKNDMVEQMHEDIISLWDQSLKPCVKLTPLCVNLKCTDLKNDTNTNSSNGRMIMEKGEIKNCSFN
ISTSIRNKVQKEYAFFYKLDIRPIDNTTYRLISCNTSVITQACPKVSFEPIPIHYCAPAGFAILKCNDKTFNGTGPCTNV
STVQCTHGIRPVVSTQLLLNGSLAEEEGVIRSANFTDNAKTIIVQLNTSVEINCTRPNNNTRKSIRIQRGPGRAFVTIGK
IGNMRQAHCNISRAKWMSTLKQIASKLREQFGNNKTVIFKQSSGGDPEIVTHSFNCGGEFFYCNSTQLFNSTWFNSTWST
EGSNNTEGSDTITLPCRIKQFINMWQEVGKAMYAPPISGQIRCSSNITGLLLTRDGGKNTNESEVFRPGGGDMRDNWRSE
LYKYKVVKIETLGVAPTKAKRRVVQREKRAVGIGALFLGFLGAAGSTMGAASMTLTVQARQLLSGIVQQQNNLLRAIEAQ
QHLLQLTVWGIKQLQARILAVERYLKDQQLLGIWGCSGKLICTTAVPWNASWSNKSLEQFWNNMTWMEWDREINNYTSLI
HSLIDESQNQQEKNEQELLELDKWASLWNWFNITNWLWYIKIFIMIVGGLVGLRIVFAVLSIVNRVRQGYSPLSFQTHLP
NRGGPDRPEGIEEEGGERDRDRSVRLVNGSLALIWDDLRSLCLFSYHRLRDLLLIVTRIVELLGRRGWEALKYWWNLLQY
WSQELKNSAVSLLNATAIAVAEGTDRVIEVVQGAYRAIRHIPRRIRQGLERIL
ENV_HV1H2
UNP
2
1
P04578
MRVKEKYQHLWRWGWRWGTMLLGMLMICSATEKLWVTVYFGVPVWKEATTTLFCASDAKAYDTEVHNVWATHACVPTDPN
PQEVVLVNVTENFNMWKNDMVEQMHEDIISLWDQSLKPCVKLTPLCVSLKCTDLKNDTNTNSSSGRMIMEKGEIKNCSFN
ISTSKRGKVQKEYAFFYKLDIIPIDNDTTSYTLTSCNTSVITQACPKVSFEPIPIHYCAPAGFAILKCNNKTFNGTGPCT
NVSTVQCTHGIRPVVSTQLLLNGSLAEEEVVIRSVNFTDNAKTIIVQLDTSVEINCTRPNNNTRKKIRIQRGPGRAFVTI
GKIGNMRQAHCNISRAKWNATLKQIDSKLREQFGNNKTIIFKQSSGGDPEIVTHSFNCGGEFFYCNSTQLFNSTWSTKGS
NNTEGSDTITLPCRIKQIINMWQEVGKAMYAPPISGQIRCSSNITGLLLTRDGGNSNNESEIFRPGGGDMRDNWRSELYK
YKVVKIEPLGVAPTKAKRRVVQREKRAVGIGALFLGFLGAAGSTMGAASMTLTVQARQLLSGIVQQQNNLLRAIEGQQHL
LQLTVWGIKQLQARILAVERYLKDQQLLGIWGCSGKLICTTAVPWNASWSNKSLEQIWNNMTWMEWDREINNYTSLIHSL
IEESQNQQEKNEQELLELDKWASLWNWFNITNWLWYIKLFIMIVGGLVGLRIVFAVLSIVNRVRQGYSPLSFQTHLPNPR
GPDRPEGIEEEGGERDRDRSIRLVNGSLALIWDDLRSLCLFSYHRLRDLLLIVTRIVELLGRRGWEALKYWWNLLQYWSQ
ELKNSAVNLLNATAIAVAEGTDRVIELVQAAYRAIRHIPRRIRQGLERILL
544
579
1AIK
546
581
P04578
N
1
2
37
623
656
1AIK
628
661
P04578
C
2
2
35
150
P 3 2 1