0.014304 0.000000 0.002597 0.000000 0.014047 0.000000 0.000000 0.000000 0.014138 0.00000 0.00000 0.00000 Skordalakes, E. Dodson, G. Elgendy, S. Goodwin, C.A. Green, D. Tyrrel, R. Scully, M.F. Freyssinet, J. Kakkar, V.V. Deadman, J. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 4 90.00 100.29 90.00 69.910 71.191 71.889 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C32 H34 B N3 O6 567.440 PHENYLMETHYLENECARBOXY-(METHYLENEAMINO-FORMYL-DIPHENYLMETHYL)METHY-PRO-BOROVAL peptide-like C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C9 H11 N O6 S 261.252 n O-SULFO-L-TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking US Protein Sci. PRCIEI 0795 0961-8368 1 426 471 1304349 The refined 1.9-A X-ray crystal structure of D-Phe-Pro-Arg chloromethylketone-inhibited human alpha-thrombin: structure analysis, overall structure, electrostatic properties, detailed active-site geometry, and structure-function relationships. 1992 US J.Biol.Chem. JBCHA3 0071 0021-9258 266 20085 Crystallographic Analysis at 3.0-A Resolution of the Binding to Human Thrombin of Four Active Site-Directed Inhibitors 1991 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 100 1 MIRRORS IMAGE PLATE 1996-10-15 RIGAKU RAXIS II CU FILTER M x-ray 1 1.5418 1.0 1.5418 ROTATING ANODE RIGAKU RUH2R 4096.534 ALPHA-THROMBIN (SMALL SUBUNIT) 3.4.21.5 1 nat polymer 29780.219 ALPHA-THROMBIN (LARGE SUBUNIT) 3.4.21.5 1 nat polymer 1606.616 HIRUGEN RESIDUES 55 - 64 1 nat polymer 567.440 PHENYLMETHYLENECARBOXY-(METHYLENEAMINO-FORMYL-DIPHENYLMETHYL)METHY-PRO-BOROVAL 1 syn non-polymer 18.015 water 298 nat water no no TFGSGEADCGLRPLFEKKSLEDKTERELLESYIDGR TFGSGEADCGLRPLFEKKSLEDKTERELLESYIDGR L polypeptide(L) no no IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISM LEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVL QVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFY THVFRLKKWIQKVIDQFGE IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISM LEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVL QVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFY THVFRLKKWIQKVIDQFGE H polypeptide(L) no yes NEDFEEIPEE(TYS)L NEDFEEIPEEYL I polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n human Homo sample 9606 Homo sapiens PLASMA human Homo sample 9606 Homo sapiens PLASMA medicinal leech Hirudo sample 6421 Hirudo medicinalis 1 2.48 44.5 7.2 PROTEIN WAS CRYSTALLIZED FROM 25% PEG 8000, 0.05M SODIUM PHOSPHATE, PH 7.2, TEMPERATURE 4 DEGREES CELSIUS, temperature 277K 277 repository Initial release Version format compliance Atomic model Database references Derived calculations Non-polymer description Structure summary Version format compliance Non-polymer description Other Other 1 0 1997-10-15 1 1 2008-03-03 1 2 2011-07-13 1 3 2012-04-11 1 4 2012-12-12 1 5 2013-03-13 Y BNL 1997-04-30 REL T19 PHENYLMETHYLENECARBOXY-(METHYLENEAMINO-FORMYL-DIPHENYLMETHYL)METHY-PRO-BOROVAL HOH water T19 3 4 T19 T19 3 H HOH 17 5 HOH HOH 17 L HOH 27 5 HOH HOH 27 L HOH 44 5 HOH HOH 44 L HOH 51 5 HOH HOH 51 L HOH 52 5 HOH HOH 52 L HOH 62 5 HOH HOH 62 L HOH 65 5 HOH HOH 65 L HOH 66 5 HOH HOH 66 L HOH 68 5 HOH HOH 68 L HOH 93 5 HOH HOH 93 L HOH 95 5 HOH HOH 95 L HOH 104 5 HOH HOH 104 L HOH 109 5 HOH HOH 109 L HOH 113 5 HOH HOH 113 L HOH 130 5 HOH HOH 130 L HOH 131 5 HOH HOH 131 L HOH 133 5 HOH HOH 133 L HOH 138 5 HOH HOH 138 L HOH 164 5 HOH HOH 164 L HOH 168 5 HOH HOH 168 L HOH 184 5 HOH HOH 184 L HOH 193 5 HOH HOH 193 L HOH 195 5 HOH HOH 195 L HOH 197 5 HOH HOH 197 L HOH 204 5 HOH HOH 204 L HOH 208 5 HOH HOH 208 L HOH 210 5 HOH HOH 210 L HOH 217 5 HOH HOH 217 L HOH 231 5 HOH HOH 231 L HOH 239 5 HOH HOH 239 L HOH 240 5 HOH HOH 240 L HOH 255 5 HOH HOH 255 L HOH 258 5 HOH HOH 258 L HOH 262 5 HOH HOH 262 L HOH 276 5 HOH HOH 276 L HOH 286 5 HOH HOH 286 L HOH 288 5 HOH HOH 288 L HOH 304 5 HOH HOH 304 L HOH 307 5 HOH HOH 307 L HOH 317 5 HOH HOH 317 L HOH 1 5 HOH HOH 248 H HOH 2 5 HOH HOH 249 H HOH 3 5 HOH HOH 250 H HOH 4 5 HOH HOH 251 H HOH 6 5 HOH HOH 252 H HOH 7 5 HOH HOH 253 H HOH 8 5 HOH HOH 254 H HOH 9 5 HOH HOH 255 H HOH 10 5 HOH HOH 256 H HOH 11 5 HOH HOH 257 H HOH 12 5 HOH HOH 258 H HOH 13 5 HOH HOH 259 H HOH 14 5 HOH HOH 260 H HOH 15 5 HOH HOH 261 H HOH 16 5 HOH HOH 262 H HOH 18 5 HOH HOH 263 H HOH 19 5 HOH HOH 264 H HOH 20 5 HOH HOH 265 H HOH 21 5 HOH HOH 266 H HOH 22 5 HOH HOH 267 H HOH 23 5 HOH HOH 268 H HOH 24 5 HOH HOH 269 H HOH 25 5 HOH HOH 270 H HOH 26 5 HOH HOH 271 H HOH 29 5 HOH HOH 272 H HOH 30 5 HOH HOH 273 H HOH 32 5 HOH HOH 274 H HOH 33 5 HOH HOH 275 H HOH 35 5 HOH HOH 276 H HOH 36 5 HOH HOH 277 H HOH 37 5 HOH HOH 278 H HOH 38 5 HOH HOH 279 H HOH 39 5 HOH HOH 280 H HOH 40 5 HOH HOH 281 H HOH 41 5 HOH HOH 282 H HOH 42 5 HOH HOH 283 H HOH 43 5 HOH HOH 284 H HOH 45 5 HOH HOH 285 H HOH 46 5 HOH HOH 286 H HOH 47 5 HOH HOH 287 H HOH 48 5 HOH HOH 288 H HOH 49 5 HOH HOH 289 H HOH 50 5 HOH HOH 290 H HOH 53 5 HOH HOH 291 H HOH 54 5 HOH HOH 292 H HOH 55 5 HOH HOH 293 H HOH 56 5 HOH HOH 294 H HOH 57 5 HOH HOH 295 H HOH 58 5 HOH HOH 296 H HOH 59 5 HOH HOH 297 H HOH 60 5 HOH HOH 298 H HOH 61 5 HOH HOH 299 H HOH 63 5 HOH HOH 300 H HOH 64 5 HOH HOH 301 H HOH 67 5 HOH HOH 302 H HOH 69 5 HOH HOH 303 H HOH 70 5 HOH HOH 304 H HOH 71 5 HOH HOH 305 H HOH 72 5 HOH HOH 306 H HOH 73 5 HOH HOH 307 H HOH 74 5 HOH HOH 308 H HOH 75 5 HOH HOH 309 H HOH 76 5 HOH HOH 310 H HOH 77 5 HOH HOH 311 H HOH 78 5 HOH HOH 312 H HOH 79 5 HOH HOH 313 H HOH 80 5 HOH HOH 314 H HOH 81 5 HOH HOH 315 H HOH 82 5 HOH HOH 316 H HOH 83 5 HOH HOH 317 H HOH 84 5 HOH HOH 318 H HOH 85 5 HOH HOH 319 H HOH 86 5 HOH HOH 320 H HOH 87 5 HOH HOH 321 H HOH 88 5 HOH HOH 322 H HOH 89 5 HOH HOH 323 H HOH 90 5 HOH HOH 324 H HOH 91 5 HOH HOH 325 H HOH 92 5 HOH HOH 326 H HOH 94 5 HOH HOH 327 H HOH 96 5 HOH HOH 328 H HOH 97 5 HOH HOH 329 H HOH 98 5 HOH HOH 330 H HOH 99 5 HOH HOH 331 H HOH 100 5 HOH HOH 332 H HOH 101 5 HOH HOH 333 H HOH 102 5 HOH HOH 334 H HOH 103 5 HOH HOH 335 H HOH 105 5 HOH HOH 336 H HOH 106 5 HOH HOH 337 H HOH 107 5 HOH HOH 338 H HOH 108 5 HOH HOH 339 H HOH 110 5 HOH HOH 340 H HOH 111 5 HOH HOH 341 H HOH 114 5 HOH HOH 342 H HOH 115 5 HOH HOH 343 H HOH 116 5 HOH HOH 344 H HOH 117 5 HOH HOH 345 H HOH 118 5 HOH HOH 346 H HOH 119 5 HOH HOH 347 H HOH 120 5 HOH HOH 348 H HOH 121 5 HOH HOH 349 H HOH 122 5 HOH HOH 350 H HOH 123 5 HOH HOH 351 H HOH 124 5 HOH HOH 352 H HOH 126 5 HOH HOH 353 H HOH 127 5 HOH HOH 354 H HOH 128 5 HOH HOH 355 H HOH 129 5 HOH HOH 356 H HOH 132 5 HOH HOH 357 H HOH 134 5 HOH HOH 358 H HOH 135 5 HOH HOH 359 H HOH 136 5 HOH HOH 360 H HOH 137 5 HOH HOH 361 H HOH 140 5 HOH HOH 362 H HOH 141 5 HOH HOH 363 H HOH 142 5 HOH HOH 364 H HOH 143 5 HOH HOH 365 H HOH 144 5 HOH HOH 366 H HOH 146 5 HOH HOH 367 H HOH 147 5 HOH HOH 368 H HOH 149 5 HOH HOH 369 H HOH 150 5 HOH HOH 370 H HOH 151 5 HOH HOH 371 H HOH 152 5 HOH HOH 372 H HOH 153 5 HOH HOH 373 H HOH 154 5 HOH HOH 374 H HOH 155 5 HOH HOH 375 H HOH 156 5 HOH HOH 376 H HOH 157 5 HOH HOH 377 H HOH 158 5 HOH HOH 378 H HOH 159 5 HOH HOH 379 H HOH 160 5 HOH HOH 380 H HOH 161 5 HOH HOH 381 H HOH 163 5 HOH HOH 382 H HOH 165 5 HOH HOH 383 H HOH 166 5 HOH HOH 384 H HOH 169 5 HOH HOH 385 H HOH 170 5 HOH HOH 386 H HOH 171 5 HOH HOH 387 H HOH 172 5 HOH HOH 388 H HOH 173 5 HOH HOH 389 H HOH 174 5 HOH HOH 390 H HOH 175 5 HOH HOH 391 H HOH 176 5 HOH HOH 392 H HOH 177 5 HOH HOH 393 H HOH 178 5 HOH HOH 394 H HOH 180 5 HOH HOH 395 H HOH 181 5 HOH HOH 396 H HOH 182 5 HOH HOH 397 H HOH 183 5 HOH HOH 398 H HOH 185 5 HOH HOH 399 H HOH 186 5 HOH HOH 400 H HOH 187 5 HOH HOH 401 H HOH 188 5 HOH HOH 402 H HOH 189 5 HOH HOH 403 H HOH 190 5 HOH HOH 404 H HOH 191 5 HOH HOH 405 H HOH 192 5 HOH HOH 406 H HOH 196 5 HOH HOH 407 H HOH 198 5 HOH HOH 408 H HOH 202 5 HOH HOH 409 H HOH 203 5 HOH HOH 410 H HOH 205 5 HOH HOH 411 H HOH 206 5 HOH HOH 412 H HOH 209 5 HOH HOH 413 H HOH 212 5 HOH HOH 414 H HOH 214 5 HOH HOH 415 H HOH 215 5 HOH HOH 416 H HOH 218 5 HOH HOH 417 H HOH 219 5 HOH HOH 418 H HOH 221 5 HOH HOH 419 H HOH 222 5 HOH HOH 420 H HOH 223 5 HOH HOH 421 H HOH 225 5 HOH HOH 422 H HOH 226 5 HOH HOH 423 H HOH 227 5 HOH HOH 424 H HOH 228 5 HOH HOH 425 H HOH 229 5 HOH HOH 426 H HOH 234 5 HOH HOH 427 H HOH 235 5 HOH HOH 428 H HOH 236 5 HOH HOH 429 H HOH 238 5 HOH HOH 430 H HOH 241 5 HOH HOH 431 H HOH 242 5 HOH HOH 432 H HOH 243 5 HOH HOH 433 H HOH 245 5 HOH HOH 434 H HOH 247 5 HOH HOH 435 H HOH 248 5 HOH HOH 436 H HOH 249 5 HOH HOH 437 H HOH 251 5 HOH HOH 438 H HOH 252 5 HOH HOH 439 H HOH 254 5 HOH HOH 440 H HOH 256 5 HOH HOH 441 H HOH 257 5 HOH HOH 442 H HOH 259 5 HOH HOH 443 H HOH 260 5 HOH HOH 444 H HOH 261 5 HOH HOH 445 H HOH 263 5 HOH HOH 446 H HOH 264 5 HOH HOH 447 H HOH 265 5 HOH HOH 448 H HOH 267 5 HOH HOH 449 H HOH 268 5 HOH HOH 450 H HOH 269 5 HOH HOH 451 H HOH 270 5 HOH HOH 452 H HOH 273 5 HOH HOH 453 H HOH 275 5 HOH HOH 454 H HOH 278 5 HOH HOH 455 H HOH 281 5 HOH HOH 456 H HOH 282 5 HOH HOH 457 H HOH 287 5 HOH HOH 458 H HOH 289 5 HOH HOH 459 H HOH 290 5 HOH HOH 460 H HOH 291 5 HOH HOH 461 H HOH 292 5 HOH HOH 462 H HOH 293 5 HOH HOH 463 H HOH 295 5 HOH HOH 464 H HOH 296 5 HOH HOH 465 H HOH 297 5 HOH HOH 466 H HOH 300 5 HOH HOH 467 H HOH 301 5 HOH HOH 468 H HOH 302 5 HOH HOH 469 H HOH 306 5 HOH HOH 470 H HOH 308 5 HOH HOH 471 H HOH 309 5 HOH HOH 472 H HOH 310 5 HOH HOH 473 H HOH 313 5 HOH HOH 474 H HOH 316 5 HOH HOH 475 H HOH 321 5 HOH HOH 476 H HOH 322 5 HOH HOH 477 H HOH 330 5 HOH HOH 478 H HOH 333 5 HOH HOH 479 H HOH 336 5 HOH HOH 480 H HOH 337 5 HOH HOH 481 H HOH 341 5 HOH HOH 482 H HOH 348 5 HOH HOH 483 H HOH 349 5 HOH HOH 484 H HOH 353 5 HOH HOH 485 H HOH 354 5 HOH HOH 486 H HOH 356 5 HOH HOH 487 H HOH 357 5 HOH HOH 488 H HOH 381 5 HOH HOH 489 H HOH 390 5 HOH HOH 490 H HOH 402 5 HOH HOH 491 H HOH 417 5 HOH HOH 492 H HOH 418 5 HOH HOH 493 H HOH 450 5 HOH HOH 494 H HOH 462 5 HOH HOH 495 H HOH 463 5 HOH HOH 496 H HOH 491 5 HOH HOH 497 H HOH 112 5 HOH HOH 112 I HOH 145 5 HOH HOH 145 I HOH 148 5 HOH HOH 148 I HOH 162 5 HOH HOH 162 I HOH 179 5 HOH HOH 179 I HOH 246 5 HOH HOH 246 I HOH 351 5 HOH HOH 351 I HOH 352 5 HOH HOH 352 I n 1 H 1 L n 2 G 1 L n 3 F 1 L n 4 E 1 L n 5 D 1 L n 6 C 1 L ALA 1 n 7 B ALA 1 L ASP 1 n 8 A ASP 1 L CYS 1 n 9 CYS 1 L GLY 2 n 10 GLY 2 L LEU 3 n 11 LEU 3 L ARG 4 n 12 ARG 4 L PRO 5 n 13 PRO 5 L LEU 6 n 14 LEU 6 L PHE 7 n 15 PHE 7 L GLU 8 n 16 GLU 8 L LYS 9 n 17 LYS 9 L LYS 10 n 18 LYS 10 L SER 11 n 19 SER 11 L LEU 12 n 20 LEU 12 L GLU 13 n 21 GLU 13 L ASP 14 n 22 ASP 14 L LYS 14 n 23 A LYS 14 L THR 14 n 24 B THR 14 L GLU 14 n 25 C GLU 14 L ARG 14 n 26 D ARG 14 L GLU 14 n 27 E GLU 14 L LEU 14 n 28 F LEU 14 L LEU 14 n 29 G LEU 14 L GLU 14 n 30 H GLU 14 L SER 14 n 31 I SER 14 L TYR 14 n 32 J TYR 14 L ILE 14 n 33 K ILE 14 L n 34 L 14 L n 35 M 14 L n 36 N 14 L ILE 16 n 1 ILE 16 H VAL 17 n 2 VAL 17 H GLU 18 n 3 GLU 18 H GLY 19 n 4 GLY 19 H SER 20 n 5 SER 20 H ASP 21 n 6 ASP 21 H ALA 22 n 7 ALA 22 H GLU 23 n 8 GLU 23 H ILE 24 n 9 ILE 24 H GLY 25 n 10 GLY 25 H MET 26 n 11 MET 26 H SER 27 n 12 SER 27 H PRO 28 n 13 PRO 28 H TRP 29 n 14 TRP 29 H GLN 30 n 15 GLN 30 H VAL 31 n 16 VAL 31 H MET 32 n 17 MET 32 H LEU 33 n 18 LEU 33 H PHE 34 n 19 PHE 34 H ARG 35 n 20 ARG 35 H LYS 36 n 21 LYS 36 H SER 37 n 22 SER 37 H PRO 37 n 23 A PRO 37 H GLN 38 n 24 GLN 38 H GLU 39 n 25 GLU 39 H LEU 40 n 26 LEU 40 H LEU 41 n 27 LEU 41 H CYS 42 n 28 CYS 42 H GLY 43 n 29 GLY 43 H ALA 44 n 30 ALA 44 H SER 45 n 31 SER 45 H LEU 46 n 32 LEU 46 H ILE 47 n 33 ILE 47 H SER 48 n 34 SER 48 H ASP 49 n 35 ASP 49 H ARG 50 n 36 ARG 50 H TRP 51 n 37 TRP 51 H VAL 52 n 38 VAL 52 H LEU 53 n 39 LEU 53 H THR 54 n 40 THR 54 H ALA 55 n 41 ALA 55 H ALA 56 n 42 ALA 56 H HIS 57 n 43 HIS 57 H CYS 58 n 44 CYS 58 H LEU 59 n 45 LEU 59 H LEU 60 n 46 LEU 60 H TYR 60 n 47 A TYR 60 H PRO 60 n 48 B PRO 60 H PRO 60 n 49 C PRO 60 H TRP 60 n 50 D TRP 60 H ASP 60 n 51 E ASP 60 H LYS 60 n 52 F LYS 60 H ASN 60 n 53 G ASN 60 H PHE 60 n 54 H PHE 60 H THR 60 n 55 I THR 60 H GLU 61 n 56 GLU 61 H ASN 62 n 57 ASN 62 H ASP 63 n 58 ASP 63 H LEU 64 n 59 LEU 64 H LEU 65 n 60 LEU 65 H VAL 66 n 61 VAL 66 H ARG 67 n 62 ARG 67 H ILE 68 n 63 ILE 68 H GLY 69 n 64 GLY 69 H LYS 70 n 65 LYS 70 H HIS 71 n 66 HIS 71 H SER 72 n 67 SER 72 H ARG 73 n 68 ARG 73 H THR 74 n 69 THR 74 H ARG 75 n 70 ARG 75 H TYR 76 n 71 TYR 76 H GLU 77 n 72 GLU 77 H ARG 77 n 73 A ARG 77 H ASN 78 n 74 ASN 78 H ILE 79 n 75 ILE 79 H GLU 80 n 76 GLU 80 H LYS 81 n 77 LYS 81 H ILE 82 n 78 ILE 82 H SER 83 n 79 SER 83 H MET 84 n 80 MET 84 H LEU 85 n 81 LEU 85 H GLU 86 n 82 GLU 86 H LYS 87 n 83 LYS 87 H ILE 88 n 84 ILE 88 H TYR 89 n 85 TYR 89 H ILE 90 n 86 ILE 90 H HIS 91 n 87 HIS 91 H PRO 92 n 88 PRO 92 H ARG 93 n 89 ARG 93 H TYR 94 n 90 TYR 94 H ASN 95 n 91 ASN 95 H TRP 96 n 92 TRP 96 H ARG 97 n 93 ARG 97 H GLU 97 n 94 A GLU 97 H ASN 98 n 95 ASN 98 H LEU 99 n 96 LEU 99 H ASP 100 n 97 ASP 100 H ARG 101 n 98 ARG 101 H ASP 102 n 99 ASP 102 H ILE 103 n 100 ILE 103 H ALA 104 n 101 ALA 104 H LEU 105 n 102 LEU 105 H MET 106 n 103 MET 106 H LYS 107 n 104 LYS 107 H LEU 108 n 105 LEU 108 H LYS 109 n 106 LYS 109 H LYS 110 n 107 LYS 110 H PRO 111 n 108 PRO 111 H VAL 112 n 109 VAL 112 H ALA 113 n 110 ALA 113 H PHE 114 n 111 PHE 114 H SER 115 n 112 SER 115 H ASP 116 n 113 ASP 116 H TYR 117 n 114 TYR 117 H ILE 118 n 115 ILE 118 H HIS 119 n 116 HIS 119 H PRO 120 n 117 PRO 120 H VAL 121 n 118 VAL 121 H CYS 122 n 119 CYS 122 H LEU 123 n 120 LEU 123 H PRO 124 n 121 PRO 124 H ASP 125 n 122 ASP 125 H ARG 126 n 123 ARG 126 H GLU 127 n 124 GLU 127 H THR 128 n 125 THR 128 H ALA 129 n 126 ALA 129 H ALA 129 n 127 A ALA 129 H SER 129 n 128 B SER 129 H LEU 129 n 129 C LEU 129 H LEU 130 n 130 LEU 130 H GLN 131 n 131 GLN 131 H ALA 132 n 132 ALA 132 H GLY 133 n 133 GLY 133 H TYR 134 n 134 TYR 134 H LYS 135 n 135 LYS 135 H GLY 136 n 136 GLY 136 H ARG 137 n 137 ARG 137 H VAL 138 n 138 VAL 138 H THR 139 n 139 THR 139 H GLY 140 n 140 GLY 140 H TRP 141 n 141 TRP 141 H GLY 142 n 142 GLY 142 H ASN 143 n 143 ASN 143 H LEU 144 n 144 LEU 144 H LYS 145 n 145 LYS 145 H GLU 146 n 146 GLU 146 H THR 147 n 147 THR 147 H n 148 A 147 H n 149 B 147 H n 150 C 147 H n 151 D 147 H n 152 E 147 H n 153 F 147 H LYS 149 n 154 E LYS 149 H GLY 150 n 155 GLY 150 H GLN 151 n 156 GLN 151 H PRO 152 n 157 PRO 152 H SER 153 n 158 SER 153 H VAL 154 n 159 VAL 154 H LEU 155 n 160 LEU 155 H GLN 156 n 161 GLN 156 H VAL 157 n 162 VAL 157 H VAL 158 n 163 VAL 158 H ASN 159 n 164 ASN 159 H LEU 160 n 165 LEU 160 H PRO 161 n 166 PRO 161 H ILE 162 n 167 ILE 162 H VAL 163 n 168 VAL 163 H GLU 164 n 169 GLU 164 H ARG 165 n 170 ARG 165 H PRO 166 n 171 PRO 166 H VAL 167 n 172 VAL 167 H CYS 168 n 173 CYS 168 H LYS 169 n 174 LYS 169 H ASP 170 n 175 ASP 170 H SER 171 n 176 SER 171 H THR 172 n 177 THR 172 H ARG 173 n 178 ARG 173 H ILE 174 n 179 ILE 174 H ARG 175 n 180 ARG 175 H ILE 176 n 181 ILE 176 H THR 177 n 182 THR 177 H ASP 178 n 183 ASP 178 H ASN 179 n 184 ASN 179 H MET 180 n 185 MET 180 H PHE 181 n 186 PHE 181 H CYS 182 n 187 CYS 182 H ALA 183 n 188 ALA 183 H GLY 184 n 189 A GLY 184 H TYR 184 n 190 TYR 184 H LYS 185 n 191 LYS 185 H PRO 186 n 192 PRO 186 H ASP 186 n 193 A ASP 186 H GLU 186 n 194 B GLU 186 H GLY 186 n 195 C GLY 186 H LYS 186 n 196 D LYS 186 H ARG 187 n 197 ARG 187 H GLY 188 n 198 GLY 188 H ASP 189 n 199 ASP 189 H ALA 190 n 200 ALA 190 H CYS 191 n 201 CYS 191 H GLU 192 n 202 GLU 192 H GLY 193 n 203 GLY 193 H ASP 194 n 204 ASP 194 H SER 195 n 205 SER 195 H GLY 196 n 206 GLY 196 H GLY 197 n 207 GLY 197 H PRO 198 n 208 PRO 198 H PHE 199 n 209 PHE 199 H VAL 200 n 210 VAL 200 H MET 201 n 211 MET 201 H LYS 202 n 212 LYS 202 H SER 203 n 213 SER 203 H PRO 204 n 214 PRO 204 H PHE 204 n 215 A PHE 204 H ASN 204 n 216 B ASN 204 H ASN 205 n 217 ASN 205 H ARG 206 n 218 ARG 206 H TRP 207 n 219 TRP 207 H TYR 208 n 220 TYR 208 H GLN 209 n 221 GLN 209 H MET 210 n 222 MET 210 H GLY 211 n 223 GLY 211 H ILE 212 n 224 ILE 212 H VAL 213 n 225 VAL 213 H SER 214 n 226 SER 214 H TRP 215 n 227 TRP 215 H GLY 216 n 228 GLY 216 H GLU 217 n 229 GLU 217 H GLY 219 n 230 GLY 219 H CYS 220 n 231 CYS 220 H ASP 221 n 232 A ASP 221 H ARG 221 n 233 ARG 221 H ASP 222 n 234 ASP 222 H GLY 223 n 235 GLY 223 H LYS 224 n 236 LYS 224 H TYR 225 n 237 TYR 225 H GLY 226 n 238 GLY 226 H PHE 227 n 239 PHE 227 H TYR 228 n 240 TYR 228 H THR 229 n 241 THR 229 H HIS 230 n 242 HIS 230 H VAL 231 n 243 VAL 231 H PHE 232 n 244 PHE 232 H ARG 233 n 245 ARG 233 H LEU 234 n 246 LEU 234 H LYS 235 n 247 LYS 235 H LYS 236 n 248 LYS 236 H TRP 237 n 249 TRP 237 H ILE 238 n 250 ILE 238 H GLN 239 n 251 GLN 239 H LYS 240 n 252 LYS 240 H VAL 241 n 253 VAL 241 H ILE 242 n 254 ILE 242 H ASP 243 n 255 ASP 243 H GLN 244 n 256 GLN 244 H PHE 245 n 257 PHE 245 H n 258 246 H n 259 247 H n 1 53 I n 2 54 I ASP 55 n 3 ASP 55 I PHE 56 n 4 PHE 56 I GLU 57 n 5 GLU 57 I GLU 58 n 6 GLU 58 I ILE 59 n 7 ILE 59 I PRO 60 n 8 PRO 60 I GLU 61 n 9 GLU 61 I GLU 62 n 10 GLU 62 I TYS 63 n 11 TYS 63 I LEU 64 n 12 LEU 64 I author_and_software_defined_assembly PISA 3 trimeric 4290 -14 12730 I TYS 63 O-SULFO-L-TYROSINE C TYS 11 TYR 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 H O LYS 81 B O LYS 77 H N ILE 68 B N ILE 63 H O LEU 65 B O LEU 60 H N PHE 34 B N PHE 19 H O VAL 31 B O VAL 16 H N ALA 44 B N ALA 30 H O VAL 52 B O VAL 38 H N MET 106 B N MET 103 H O LEU 105 B O LEU 102 H N TYR 89 B N TYR 85 H O GLY 136 B O GLY 136 H N LEU 160 B N LEU 165 H O PHE 181 B O PHE 186 H N TYR 228 B N TYR 240 H O PHE 227 B O PHE 239 H N TRP 215 B N TRP 227 H O TYR 208 B O TYR 220 H N MET 201 B N MET 211 1 H HOH 248 F HOH 1 H HOH 302 F HOH 1 H CG ARG 75 B CG ARG 70 1 Y 1 H CD ARG 75 B CD ARG 70 1 Y 1 H NE ARG 75 B NE ARG 70 1 Y 1 H CZ ARG 75 B CZ ARG 70 1 Y 1 H NH1 ARG 75 B NH1 ARG 70 1 Y 1 H NH2 ARG 75 B NH2 ARG 70 1 Y 1 H CB THR 147 B CB THR 147 1 Y 1 H OG1 THR 147 B OG1 THR 147 1 Y 1 H CG2 THR 147 B CG2 THR 147 1 Y E 1 H CG LYS 149 B CG LYS 154 1 Y E 1 H CD LYS 149 B CD LYS 154 1 Y E 1 H CE LYS 149 B CE LYS 154 1 Y E 1 H NZ LYS 149 B NZ LYS 154 1 Y 1 H CG GLN 151 B CG GLN 156 1 Y 1 H CD GLN 151 B CD GLN 156 1 Y 1 H OE1 GLN 151 B OE1 GLN 156 1 Y 1 H NE2 GLN 151 B NE2 GLN 156 1 Y 1 I CB GLU 61 C CB GLU 9 1 Y 1 I CG GLU 61 C CG GLU 9 1 Y 1 I CD GLU 61 C CD GLU 9 1 Y 1 I OE1 GLU 61 C OE1 GLU 9 1 Y 1 I OE2 GLU 61 C OE2 GLU 9 1 Y H 1 L THR 1 A THR 1 1 Y G 1 L PHE 1 A PHE 2 1 Y F 1 L GLY 1 A GLY 3 1 Y E 1 L SER 1 A SER 4 1 Y D 1 L GLY 1 A GLY 5 1 Y C 1 L GLU 1 A GLU 6 1 Y L 1 L ASP 14 A ASP 34 1 Y M 1 L GLY 14 A GLY 35 1 Y N 1 L ARG 14 A ARG 36 1 Y A 1 H TRP 147 B TRP 148 1 Y B 1 H THR 147 B THR 149 1 Y C 1 H ALA 147 B ALA 150 1 Y D 1 H ASN 147 B ASN 151 1 Y E 1 H VAL 147 B VAL 152 1 Y F 1 H GLY 147 B GLY 153 1 Y 1 H GLY 246 B GLY 258 1 Y 1 H GLU 247 B GLU 259 1 Y 1 I ASN 53 C ASN 1 1 Y 1 I GLU 54 C GLU 2 1 Y 1 H H O O HOH HOH 250 272 1.95 1 H H O O HOH HOH 371 477 2.06 1 H H O O HOH HOH 378 480 2.12 1 L L OE1 O GLU HOH 13 286 2.12 1 I I O O HOH HOH 145 351 2.15 1 L L O O HOH HOH 168 286 2.16 1 H H O O HOH HOH 292 382 2.16 H 1 L L OE2 O GLU HOH 14 138 2.17 E 1 H H OD2 O ASP HOH 60 425 2.17 1 L ARG 4 -11.33 B 1 H PRO 60 -10.76 1 H GLU 77 11.95 1 3.68 0.50 120.30 123.98 L L L NE CZ NH2 ARG ARG ARG 4 4 4 N 1 9.79 1.60 100.20 109.99 H H H CG SD CE MET MET MET 26 26 26 N 1 9.79 1.60 100.20 109.99 H H H CG SD CE MET MET MET 32 32 32 N 1 3.43 0.50 120.30 123.73 H H H NE CZ NH2 ARG ARG ARG 35 35 35 N 1 3.48 0.50 120.30 123.78 H H H NE CZ NH2 ARG ARG ARG 50 50 50 N 1 -3.65 0.50 120.30 116.65 H H H NE CZ NH2 ARG ARG ARG 67 67 67 N 1 4.50 0.50 120.30 124.80 H H H NE CZ NH1 ARG ARG ARG 93 93 93 N 1 -6.33 0.60 121.00 114.67 H H H CB CG CD2 TYR TYR TYR 94 94 94 N 1 5.19 0.60 121.00 126.19 H H H CB CG CD1 TYR TYR TYR 94 94 94 N 1 4.35 0.50 120.30 124.65 H H H NE CZ NH1 ARG ARG ARG 97 97 97 N 1 -6.91 0.50 120.30 113.39 H H H NE CZ NH2 ARG ARG ARG 97 97 97 N 1 6.49 0.50 120.30 126.79 H H H NE CZ NH1 ARG ARG ARG 101 101 101 N 1 -5.03 0.50 120.30 115.27 H H H NE CZ NH2 ARG ARG ARG 101 101 101 N 1 3.72 0.50 120.30 124.02 H H H NE CZ NH2 ARG ARG ARG 126 126 126 N 1 3.71 0.50 120.30 124.01 H H H NE CZ NH2 ARG ARG ARG 137 137 137 N 1 3.66 0.50 120.30 123.96 H H H NE CZ NH2 ARG ARG ARG 165 165 165 N 1 3.40 0.50 120.30 123.70 H H H NE CZ NH2 ARG ARG ARG 175 175 175 N 1 3.21 0.50 120.30 123.51 H H H NE CZ NH2 ARG ARG ARG 187 187 187 N 1 9.77 1.60 100.20 109.97 H H H CG SD CE MET MET MET 201 201 201 N 1 3.40 0.50 120.30 123.70 H H H NE CZ NH2 ARG ARG ARG 206 206 206 N 1 3.39 0.50 120.30 123.69 H H H NE CZ NH2 ARG ARG ARG 221 221 221 N 1 3.39 0.50 120.30 123.69 H H H NE CZ NH2 ARG ARG ARG 233 233 233 N 1 11.67 1.60 122.70 134.37 I I I O C N GLU GLU GLU 61 61 62 Y 1 H H O O HOH HOH 393 393 2.17 1_555 2_556 1 L PHE 7 -130.66 -87.59 1 H CYS 42 179.41 179.40 1 H ARG 50 -145.43 12.52 A 1 H TYR 60 -155.76 86.34 G 1 H ASN 60 -150.09 68.16 1 H HIS 71 -135.71 -56.30 1 H ASN 78 73.51 -3.84 1 H ILE 79 -120.12 -58.12 A 1 H GLU 97 -123.16 -60.63 1 H GLU 192 -39.27 113.74 1 I GLU 62 -159.91 -21.24 0.23 0.17 2.1 20. 20222 5. 99.5 1 2. MOLECULAR REPLACEMENT 2.1 20. 298 2668 42 0 2328 2.10 20.0 1AIX 20222 0.0 0.063 0.056 1 18. 3.6 99.5 0.243 2.1 2.17 4.7 0.227 1 2.5 97.5 data reduction DENZO data scaling SCALEPACK phasing AMoRE refinement REFMAC ALPHA-THROMBIN, HIRUGEN, PHENYLMETHYLENECARBOXY-(METHYLENEAMINO-FORMYL-DIPHENYLMETHYL)METHY-PRO-BOROVAL HUMAN ALPHA-THROMBIN TERNARY COMPLEX WITH EXOSITE INHIBITOR HIRUGEN AND ACTIVE SITE INHIBITOR PHCH2OCO-D-DPA-PRO-BOROVAL 1 N N 2 N N 3 N N 4 N N 5 N N 5 N N 5 N N L GLU 8 A GLU 16 HELX_P L LYS 10 A LYS 18 5 1 3 L GLU 14 A GLU 25 HELX_P L SER 14 A SER 31 1 2 7 C I H ALA 56 B ALA 42 HELX_P H CYS 58 B CYS 44 5 3 3 H PRO 60 B PRO 48 HELX_P H TRP 60 B TRP 50 5 4 3 B D H GLU 61 B GLU 56 HELX_P H ASP 63 B ASP 58 5 5 3 H ARG 126 B ARG 123 HELX_P H LEU 129 B LEU 129 1 6 7 C H ARG 165 B ARG 170 HELX_P H SER 171 B SER 176 1 7 7 H PRO 186 B PRO 192 HELX_P H GLU 186 B GLU 194 5 8 3 B H PHE 232 B PHE 244 HELX_P H ASP 243 B ASP 255 5 9 12 disulf 1.929 L CYS 1 A SG CYS 9 1_555 H CYS 122 B SG CYS 119 1_555 disulf 2.235 H CYS 42 B SG CYS 28 1_555 H CYS 58 B SG CYS 44 1_555 disulf 2.035 H CYS 168 B SG CYS 173 1_555 H CYS 182 B SG CYS 187 1_555 disulf 2.151 H CYS 191 B SG CYS 201 1_555 H CYS 220 B SG CYS 231 1_555 covale 1.316 I TYS 63 C N TYS 11 1_555 I GLU 62 C C GLU 10 1_555 covale 1.328 I TYS 63 C C TYS 11 1_555 I LEU 64 C N LEU 12 1_555 BLOOD COAGULATION/HYDROLASE INHIBITOR SERINE PROTEINASE, BLOOD COAGULATION, HYDROLASE-HYDROLASE INHIBITOR COMPLEX, BLOOD COAGULATION-HYDROLASE INHIBITOR complex H SER 37 B SER 22 A 1 H PRO 37 B PRO 23 -11.72 THRB_HUMAN UNP 1 328 P00734 THRB_HUMAN UNP 2 364 P00734 ITHJ_HIRME UNP 3 55 P28510 328 363 1AIX 1 14 P00734 H N L 1 1 36 364 622 1AIX 16 247 P00734 H 2 1 259 55 64 1AIX 53 64 P28510 I 3 1 12 3 GLY CONFLICT GLU 54 1AIX I P28510 UNP 61 2 4 3 2 4 anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel H LYS 81 B LYS 77 H MET 84 B MET 80 H LEU 64 B LEU 59 H ILE 68 B ILE 63 H GLN 30 B GLN 15 H ARG 35 B ARG 20 H GLU 39 B GLU 25 H SER 45 B SER 31 H TRP 51 B TRP 37 H THR 54 B THR 40 H ALA 104 B ALA 101 H LEU 108 B LEU 105 H LEU 85 B LEU 81 H ILE 90 B ILE 86 H LYS 135 B LYS 135 H GLY 140 B GLY 140 H GLN 156 B GLN 161 H PRO 161 B PRO 166 H MET 180 B MET 185 H ALA 183 B ALA 188 H GLY 226 B GLY 238 H HIS 230 B HIS 242 H TRP 207 B TRP 219 H TRP 215 B TRP 227 H PRO 198 B PRO 208 H LYS 202 B LYS 212 BINDING SITE FOR RESIDUE T19 H 3 Software 15 BINDING SITE FOR CHAIN I OF HIRUGEN Software 19 H HIS 57 B HIS 43 15 1_555 H TYR 60 B TYR 47 A 15 1_555 H GLU 97 B GLU 94 A 15 1_555 H ASN 98 B ASN 95 15 1_555 H CYS 191 B CYS 201 15 1_555 H GLU 192 B GLU 202 15 1_555 H SER 195 B SER 205 15 1_555 H SER 214 B SER 226 15 1_555 H TRP 215 B TRP 227 15 1_555 H GLY 216 B GLY 228 15 1_555 H GLU 217 B GLU 229 15 1_555 H GLY 219 B GLY 230 15 1_555 H HOH 275 F HOH 15 1_555 H HOH 336 F HOH 15 1_555 H HOH 353 F HOH 15 1_555 H PHE 34 B PHE 19 19 1_555 H GLN 38 B GLN 24 19 1_555 H LEU 65 B LEU 60 19 1_555 H ARG 67 B ARG 62 19 1_555 H ARG 73 B ARG 68 19 1_555 H THR 74 B THR 69 19 1_555 H ARG 75 B ARG 70 19 1_555 H TYR 76 B TYR 71 19 1_555 H GLU 80 B GLU 76 19 1_555 H LYS 81 B LYS 77 19 1_555 H ILE 82 B ILE 78 19 1_555 H MET 84 B MET 80 19 1_555 H HOH 267 F HOH 19 1_555 I HOH 145 G HOH 19 1_555 I HOH 148 G HOH 19 1_555 I HOH 162 G HOH 19 1_555 I HOH 179 G HOH 19 1_555 I HOH 351 G HOH 19 1_555 I HOH 352 G HOH 19 1_555 5 C 1 2 1