0.025316 0.000000 0.000000 0.000000 0.020956 0.000000 0.000000 0.000000 0.008740 0.00000 0.00000 0.00000 Weston, S.A. Tunnicliffe, A. Pauptit, R.A. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 4 90.00 90.00 90.00 39.500 47.720 114.410 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C31 H36 N2 O11 612.624 NOVOBIOCIN 4-Hydroxy-3-[4-hydroxy-3-(3-methylbut-2-enyl)benzamido]-8-methylcoumarin-7-yl 3-O-carbamoyl-5,5-di-C-methyl-alpha-l-lyxofuranoside non-polymer C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N N N 75 R C N 76 N C N 77 N O N 78 N C N 79 N S N 80 N O N 81 N H N 82 N H N 83 N H N 84 N H N 85 N H N 86 N H N 87 N H N 88 N N N 89 S C N 90 N C N 91 N O N 92 N C N 93 N C N 94 N C N 95 N O N 96 N N N 97 N O N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N N N 109 S C N 110 N C N 111 N O N 112 N C N 113 N C N 114 N C N 115 N O N 116 N O N 117 N O N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N H N 124 N H N 125 N H N 126 N H N 127 N N N 128 N C N 129 N C N 130 N O N 131 N O N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N N N 138 S C N 139 N C N 140 N O N 141 N C Y 142 N C Y 143 N N Y 144 N C Y 145 N C Y 146 N N N 147 N O N 148 N H N 149 N H N 150 N H N 151 N H N 152 N H N 153 N H N 154 N H N 155 N H N 156 N H N 157 N H N 158 N O N 159 N H N 160 N H N 161 N N N 162 S C N 163 N C N 164 N O N 165 S C N 166 N C N 167 N C N 168 N C N 169 N O N 170 N H N 171 N H N 172 N H N 173 N H N 174 N H N 175 N H N 176 N H N 177 N H N 178 N H N 179 N H N 180 N H N 181 N H N 182 N H N 183 N N N 184 S C N 185 N C N 186 N O N 187 N C N 188 N C N 189 N C N 190 N C N 191 N O N 192 N H N 193 N H N 194 N H N 195 N H N 196 N H N 197 N H N 198 N H N 199 N H N 200 N H N 201 N H N 202 N H N 203 N H N 204 N H N 205 N N N 206 S C N 207 N C N 208 N O N 209 N C N 210 N C N 211 N C N 212 N C N 213 N N N 214 N O N 215 N H N 216 N H N 217 N H N 218 N H N 219 N H N 220 N H N 221 N H N 222 N H N 223 N H N 224 N H N 225 N H N 226 N H N 227 N H N 228 N H N 229 N H N 230 N N N 231 S C N 232 N C N 233 N O N 234 N C N 235 N C N 236 N S N 237 N C N 238 N O N 239 N H N 240 N H N 241 N H N 242 N H N 243 N H N 244 N H N 245 N H N 246 N H N 247 N H N 248 N H N 249 N H N 250 N C N 251 N O N 252 N N N 253 N C N 254 N O N 255 N O N 256 R C N 257 S C N 258 R C N 259 N O N 260 R C N 261 N O N 262 N C N 263 N C N 264 N C N 265 N O Y 266 N C Y 267 N C N 268 N C Y 269 N C Y 270 N C Y 271 N C Y 272 N C N 273 N O N 274 N C N 275 N O N 276 N C N 277 N C N 278 N O N 279 N N N 280 N C N 281 N O Y 282 N C Y 283 N C Y 284 N C Y 285 N C N 286 N O Y 287 N C Y 288 N C N 289 N C N 290 N C N 291 N C N 292 N C N 293 N C N 294 N H N 295 N H N 296 N H N 297 N H N 298 N H N 299 N H N 300 N H N 301 N H N 302 N H N 303 N H N 304 N H N 305 N H N 306 N H N 307 N H N 308 N H N 309 N H N 310 N H N 311 N H N 312 N H N 313 N H N 314 N H N 315 N H N 316 N H N 317 N H N 318 N H N 319 N H N 320 N H N 321 N H N 322 N H N 323 N H N 324 N H N 325 N H N 326 N H N 327 N H N 328 N H N 329 N H N 330 N N N 331 S C N 332 N C N 333 N O N 334 N C Y 335 N C Y 336 N C Y 337 N C Y 338 N C Y 339 N C Y 340 N C N 341 N O N 342 N H N 343 N H N 344 N H N 345 N H N 346 N H N 347 N H N 348 N H N 349 N H N 350 N H N 351 N H N 352 N H N 353 N N N 354 S C N 355 N C N 356 N O N 357 N C N 358 N C N 359 N C N 360 N O N 361 N H N 362 N H N 363 N H N 364 N H N 365 N H N 366 N H N 367 N H N 368 N H N 369 N H N 370 N N N 371 S C N 372 N C N 373 N O N 374 N C N 375 N O N 376 N O N 377 N H N 378 N H N 379 N H N 380 N H N 381 N H N 382 N H N 383 N H N 384 N N N 385 S C N 386 N C N 387 N O N 388 R C N 389 N O N 390 N C N 391 N O N 392 N H N 393 N H N 394 N H N 395 N H N 396 N H N 397 N H N 398 N H N 399 N H N 400 N H N 401 N N N 402 S C N 403 N C N 404 N O N 405 N C Y 406 N C Y 407 N C Y 408 N C Y 409 N N Y 410 N C Y 411 N C Y 412 N C Y 413 N C Y 414 N C N 415 N O N 416 N H N 417 N H N 418 N H N 419 N H N 420 N H N 421 N H N 422 N H N 423 N H N 424 N H N 425 N H N 426 N H N 427 N H N 428 N N N 429 S C N 430 N C N 431 N O N 432 N C Y 433 N C Y 434 N C Y 435 N C Y 436 N C Y 437 N C Y 438 N C N 439 N O N 440 N O N 441 N H N 442 N H N 443 N H N 444 N H N 445 N H N 446 N H N 447 N H N 448 N H N 449 N H N 450 N H N 451 N H N 452 N N N 453 S C N 454 N C N 455 N O N 456 N C N 457 N C N 458 N C N 459 N O N 460 N H N 461 N H N 462 N H N 463 N H N 464 N H N 465 N H N 466 N H N 467 N H N 468 N H N 469 N H N 470 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N doub N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N doub N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N doub N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N doub N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N doub N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N doub N 136 N sing N 137 N sing N 138 N sing N 139 N sing Y 140 N sing Y 141 N doub Y 142 N doub N 143 N sing Y 144 N sing N 145 N sing Y 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N doub N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N doub N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N doub N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N doub N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N sing N 244 N sing N 245 N doub N 246 N sing N 247 N sing N 248 N sing N 249 N sing N 250 N sing N 251 N sing N 252 N sing N 253 N sing N 254 N sing N 255 N sing N 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N sing N 267 N sing N 268 N sing N 269 N sing Y 270 N doub Y 271 N sing N 272 N sing Y 273 N sing N 274 N sing N 275 N sing N 276 N sing Y 277 N doub N 278 N sing Y 279 N sing N 280 N sing Y 281 N doub N 282 N sing N 283 N sing N 284 N sing N 285 N doub N 286 N sing N 287 N doub N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N sing N 293 N doub N 294 N sing Y 295 N doub Y 296 N sing Y 297 N sing N 298 N sing Y 299 N doub N 300 N sing N 301 N sing Y 302 N sing N 303 N sing Y 304 N doub N 305 N sing N 306 N sing N 307 N sing N 308 N sing N 309 N sing N 310 N doub N 311 N sing N 312 N sing N 313 N sing N 314 N sing N 315 N sing N 316 N sing N 317 N sing N 318 N sing N 319 N sing N 320 N sing N 321 N sing N 322 N sing N 323 N sing N 324 N sing N 325 N sing N 326 N doub N 327 N sing N 328 N sing N 329 N sing N 330 N sing Y 331 N doub Y 332 N sing Y 333 N sing N 334 N sing Y 335 N doub N 336 N sing Y 337 N doub N 338 N sing Y 339 N sing N 340 N sing N 341 N sing N 342 N sing N 343 N sing N 344 N sing N 345 N sing N 346 N sing N 347 N sing N 348 N sing N 349 N doub N 350 N sing N 351 N sing N 352 N sing N 353 N sing N 354 N sing N 355 N sing N 356 N sing N 357 N sing N 358 N sing N 359 N sing N 360 N sing N 361 N sing N 362 N sing N 363 N sing N 364 N sing N 365 N sing N 366 N doub N 367 N sing N 368 N sing N 369 N sing N 370 N sing N 371 N sing N 372 N sing N 373 N sing N 374 N sing N 375 N sing N 376 N sing N 377 N sing N 378 N sing N 379 N doub N 380 N sing N 381 N sing N 382 N sing N 383 N sing N 384 N sing N 385 N sing N 386 N sing N 387 N sing N 388 N sing N 389 N sing N 390 N sing N 391 N sing N 392 N sing N 393 N sing N 394 N sing N 395 N doub N 396 N sing N 397 N sing N 398 N sing N 399 N sing Y 400 N doub Y 401 N sing Y 402 N sing N 403 N sing Y 404 N doub Y 405 N sing Y 406 N sing N 407 N sing Y 408 N sing Y 409 N doub N 410 N sing Y 411 N doub N 412 N sing Y 413 N sing N 414 N sing N 415 N sing N 416 N sing N 417 N sing N 418 N sing N 419 N sing N 420 N sing N 421 N sing N 422 N sing N 423 N doub N 424 N sing N 425 N sing N 426 N sing N 427 N sing Y 428 N doub Y 429 N sing Y 430 N sing N 431 N sing Y 432 N doub N 433 N sing Y 434 N doub N 435 N sing Y 436 N sing N 437 N sing N 438 N sing N 439 N sing N 440 N sing N 441 N sing N 442 N sing N 443 N sing N 444 N sing N 445 N sing N 446 N sing N 447 N doub N 448 N sing N 449 N sing N 450 N sing N 451 N sing N 452 N sing N 453 N sing N 454 N sing N 455 N sing N 456 N sing N 457 N sing N 458 N sing US Biochemistry BICHAW 0033 0006-2960 36 9663 9673 10.1021/bi970294+ 9245398 The entropic penalty of ordered water accounts for weaker binding of the antibiotic novobiocin to a resistant mutant of DNA gyrase: a thermodynamic and crystallographic study. 1997 To be Published 0353 Antibacterial Design Based on the Structures of Gyrase-Inhibitor Complexes US Proteins PSFGEY 0867 0887-3585 28 41 The High-Resolution Crystal Structure of a 24-kDa Gyrase B Fragment from E. Coli Complexed with One of the Most Potent Coumarin Inhibitors, Clorobiocin 1997 UK Embo J. EMJODG 0897 0261-4189 15 1412 The Nature of Inhibition of DNA Gyrase by the Coumarins and the Cyclothialidines Revealed by X-Ray Crystallography 1996 10.2210/pdb1aj6/pdb pdb_00001aj6 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 100 1 VERTICALLY FOCUSSED PT-COATED MIRROR IMAGE PLATE 1996-06 MARRESEARCH SI(111) M x-ray 1 0.87 1.0 PX9.6 SRS 0.87 SYNCHROTRON SRS BEAMLINE PX9.6 24040.936 GYRASE 5.99.1.3 N-TERMINAL 24 KDA R136H 1 man polymer 612.624 NOVOBIOCIN 1 syn non-polymer 18.015 water 89 nat water no no SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIVTIHADNSVSVQDDGRGIPTG IHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSQKLELVIQHEGKIHRQIYEHGVPQAPLAVTGETE KTGTMVRFWPSLETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKEDHFHYEG SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIVTIHADNSVSVQDDGRGIPTG IHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSQKLELVIQHEGKIHRQIYEHGVPQAPLAVTGETE KTGTMVRFWPSLETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKEDHFHYEG A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Escherichia Escherichia sample PLASMID PTB382 ENCODING MUTANT DERIVED FROM PAM24 WHICH ENCODES 24 KDA SUBDOMAIN (SUPPLIED BY A. MAXWELL, LEICESTER), WHICH IN TURN WAS DERIVED FROM PAG111 PLASMID WHICH ENCODES FOR GYRB CYTOPLASM GYRB 562 Escherichia coli CYTOPLASM 562 Escherichia coli MM294 1 2.2 45. VAPOR DIFFUSION, HANGING DROP 6.2 HANGING DROP VAPOR DIFFUSION; 12MGS/ML PROTEIN/NOVOBIOCIN MIXED WITH EQUAL VOLUME OF RESERVOIR SOLUTION (12% V/V PEG200, 100MM MES PH6.2), vapor diffusion - hanging drop database_2 pdbx_database_status struct_ref_seq_dif struct_site chem_comp_atom chem_comp_bond pdbx_initial_refinement_model repository Initial release Version format compliance Non-polymer description Version format compliance Database references Derived calculations Other Data collection Refinement description 1 0 1998-05-20 1 1 2008-03-03 1 2 2011-07-13 1 3 2021-11-03 1 4 2024-02-07 1 5 2024-04-03 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_database_status.process_site _struct_ref_seq_dif.details _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id Y BNL 1997-05-15 REL REL NOV NOVOBIOCIN HOH water THE MUTATED RESIDUE HIS 136 HAS AN UNUSUAL ECLIPSED SIDE CHAIN CONFORMATION WHICH IS STABILISED BY HYDROGEN BONDS. wild-type AA3 to be deposited shortly. Other experimental model NOV 1 2 NOV NOV 1 A HOH 1 3 HOH HOH 221 A HOH 2 3 HOH HOH 222 A HOH 3 3 HOH HOH 223 A HOH 4 3 HOH HOH 224 A HOH 5 3 HOH HOH 225 A HOH 6 3 HOH HOH 226 A HOH 7 3 HOH HOH 227 A HOH 8 3 HOH HOH 228 A HOH 10 3 HOH HOH 229 A HOH 11 3 HOH HOH 230 A HOH 12 3 HOH HOH 231 A HOH 13 3 HOH HOH 232 A HOH 14 3 HOH HOH 233 A HOH 15 3 HOH HOH 234 A HOH 16 3 HOH HOH 235 A HOH 17 3 HOH HOH 236 A HOH 18 3 HOH HOH 237 A HOH 19 3 HOH HOH 238 A HOH 20 3 HOH HOH 239 A HOH 21 3 HOH HOH 240 A HOH 23 3 HOH HOH 241 A HOH 24 3 HOH HOH 242 A HOH 25 3 HOH HOH 243 A HOH 26 3 HOH HOH 244 A HOH 28 3 HOH HOH 245 A HOH 29 3 HOH HOH 246 A HOH 31 3 HOH HOH 247 A HOH 32 3 HOH HOH 248 A HOH 33 3 HOH HOH 249 A HOH 34 3 HOH HOH 250 A HOH 35 3 HOH HOH 251 A HOH 36 3 HOH HOH 252 A HOH 37 3 HOH HOH 253 A HOH 38 3 HOH HOH 254 A HOH 39 3 HOH HOH 255 A HOH 41 3 HOH HOH 256 A HOH 42 3 HOH HOH 257 A HOH 44 3 HOH HOH 258 A HOH 45 3 HOH HOH 259 A HOH 46 3 HOH HOH 260 A HOH 47 3 HOH HOH 261 A HOH 48 3 HOH HOH 262 A HOH 49 3 HOH HOH 263 A HOH 52 3 HOH HOH 264 A HOH 53 3 HOH HOH 265 A HOH 54 3 HOH HOH 266 A HOH 55 3 HOH HOH 267 A HOH 56 3 HOH HOH 268 A HOH 58 3 HOH HOH 269 A HOH 59 3 HOH HOH 270 A HOH 61 3 HOH HOH 271 A HOH 62 3 HOH HOH 272 A HOH 63 3 HOH HOH 273 A HOH 64 3 HOH HOH 274 A HOH 65 3 HOH HOH 275 A HOH 66 3 HOH HOH 276 A HOH 68 3 HOH HOH 277 A HOH 70 3 HOH HOH 278 A HOH 71 3 HOH HOH 279 A HOH 72 3 HOH HOH 280 A HOH 73 3 HOH HOH 281 A HOH 74 3 HOH HOH 282 A HOH 75 3 HOH HOH 283 A HOH 76 3 HOH HOH 284 A HOH 77 3 HOH HOH 285 A HOH 78 3 HOH HOH 286 A HOH 79 3 HOH HOH 287 A HOH 80 3 HOH HOH 288 A HOH 81 3 HOH HOH 289 A HOH 82 3 HOH HOH 290 A HOH 83 3 HOH HOH 291 A HOH 84 3 HOH HOH 292 A HOH 85 3 HOH HOH 293 A HOH 86 3 HOH HOH 294 A HOH 88 3 HOH HOH 295 A HOH 89 3 HOH HOH 296 A HOH 90 3 HOH HOH 297 A HOH 92 3 HOH HOH 298 A HOH 93 3 HOH HOH 299 A HOH 94 3 HOH HOH 300 A HOH 95 3 HOH HOH 301 A HOH 96 3 HOH HOH 302 A HOH 97 3 HOH HOH 303 A HOH 98 3 HOH HOH 304 A HOH 99 3 HOH HOH 305 A HOH 100 3 HOH HOH 306 A HOH 101 3 HOH HOH 307 A HOH 102 3 HOH HOH 308 A HOH 103 3 HOH HOH 309 A n 1 2 A n 2 3 A n 3 4 A n 4 5 A n 5 6 A n 6 7 A n 7 8 A n 8 9 A n 9 10 A n 10 11 A VAL 12 n 11 VAL 12 A LEU 13 n 12 LEU 13 A LYS 14 n 13 LYS 14 A GLY 15 n 14 GLY 15 A LEU 16 n 15 LEU 16 A ASP 17 n 16 ASP 17 A ALA 18 n 17 ALA 18 A VAL 19 n 18 VAL 19 A ARG 20 n 19 ARG 20 A LYS 21 n 20 LYS 21 A ARG 22 n 21 ARG 22 A PRO 23 n 22 PRO 23 A GLY 24 n 23 GLY 24 A MET 25 n 24 MET 25 A TYR 26 n 25 TYR 26 A ILE 27 n 26 ILE 27 A GLY 28 n 27 GLY 28 A ASP 29 n 28 ASP 29 A THR 30 n 29 THR 30 A ASP 31 n 30 ASP 31 A ASP 32 n 31 ASP 32 A GLY 33 n 32 GLY 33 A THR 34 n 33 THR 34 A GLY 35 n 34 GLY 35 A LEU 36 n 35 LEU 36 A HIS 37 n 36 HIS 37 A HIS 38 n 37 HIS 38 A MET 39 n 38 MET 39 A VAL 40 n 39 VAL 40 A PHE 41 n 40 PHE 41 A GLU 42 n 41 GLU 42 A VAL 43 n 42 VAL 43 A VAL 44 n 43 VAL 44 A ASP 45 n 44 ASP 45 A ASN 46 n 45 ASN 46 A ALA 47 n 46 ALA 47 A ILE 48 n 47 ILE 48 A ASP 49 n 48 ASP 49 A GLU 50 n 49 GLU 50 A ALA 51 n 50 ALA 51 A LEU 52 n 51 LEU 52 A ALA 53 n 52 ALA 53 A GLY 54 n 53 GLY 54 A HIS 55 n 54 HIS 55 A CYS 56 n 55 CYS 56 A LYS 57 n 56 LYS 57 A GLU 58 n 57 GLU 58 A ILE 59 n 58 ILE 59 A ILE 60 n 59 ILE 60 A VAL 61 n 60 VAL 61 A THR 62 n 61 THR 62 A ILE 63 n 62 ILE 63 A HIS 64 n 63 HIS 64 A ALA 65 n 64 ALA 65 A ASP 66 n 65 ASP 66 A ASN 67 n 66 ASN 67 A SER 68 n 67 SER 68 A VAL 69 n 68 VAL 69 A SER 70 n 69 SER 70 A VAL 71 n 70 VAL 71 A GLN 72 n 71 GLN 72 A ASP 73 n 72 ASP 73 A ASP 74 n 73 ASP 74 A GLY 75 n 74 GLY 75 A ARG 76 n 75 ARG 76 A GLY 77 n 76 GLY 77 A ILE 78 n 77 ILE 78 A PRO 79 n 78 PRO 79 A THR 80 n 79 THR 80 A GLY 81 n 80 GLY 81 A ILE 82 n 81 ILE 82 A n 82 83 A n 83 84 A n 84 85 A n 85 86 A n 86 87 A VAL 88 n 87 VAL 88 A SER 89 n 88 SER 89 A ALA 90 n 89 ALA 90 A ALA 91 n 90 ALA 91 A GLU 92 n 91 GLU 92 A VAL 93 n 92 VAL 93 A ILE 94 n 93 ILE 94 A MET 95 n 94 MET 95 A THR 96 n 95 THR 96 A VAL 97 n 96 VAL 97 A LEU 98 n 97 LEU 98 A HIS 99 n 98 HIS 99 A ALA 100 n 99 ALA 100 A GLY 101 n 100 GLY 101 A GLY 102 n 101 GLY 102 A LYS 103 n 102 LYS 103 A PHE 104 n 103 PHE 104 A n 104 105 A n 105 106 A n 106 107 A n 107 108 A n 108 109 A n 109 110 A n 110 111 A SER 112 n 111 SER 112 A GLY 113 n 112 GLY 113 A GLY 114 n 113 GLY 114 A LEU 115 n 114 LEU 115 A HIS 116 n 115 HIS 116 A GLY 117 n 116 GLY 117 A VAL 118 n 117 VAL 118 A GLY 119 n 118 GLY 119 A VAL 120 n 119 VAL 120 A SER 121 n 120 SER 121 A VAL 122 n 121 VAL 122 A VAL 123 n 122 VAL 123 A ASN 124 n 123 ASN 124 A ALA 125 n 124 ALA 125 A LEU 126 n 125 LEU 126 A SER 127 n 126 SER 127 A GLN 128 n 127 GLN 128 A LYS 129 n 128 LYS 129 A LEU 130 n 129 LEU 130 A GLU 131 n 130 GLU 131 A LEU 132 n 131 LEU 132 A VAL 133 n 132 VAL 133 A ILE 134 n 133 ILE 134 A GLN 135 n 134 GLN 135 A HIS 136 n 135 HIS 136 A GLU 137 n 136 GLU 137 A GLY 138 n 137 GLY 138 A LYS 139 n 138 LYS 139 A ILE 140 n 139 ILE 140 A HIS 141 n 140 HIS 141 A ARG 142 n 141 ARG 142 A GLN 143 n 142 GLN 143 A ILE 144 n 143 ILE 144 A TYR 145 n 144 TYR 145 A GLU 146 n 145 GLU 146 A HIS 147 n 146 HIS 147 A GLY 148 n 147 GLY 148 A VAL 149 n 148 VAL 149 A PRO 150 n 149 PRO 150 A GLN 151 n 150 GLN 151 A ALA 152 n 151 ALA 152 A PRO 153 n 152 PRO 153 A LEU 154 n 153 LEU 154 A ALA 155 n 154 ALA 155 A VAL 156 n 155 VAL 156 A THR 157 n 156 THR 157 A GLY 158 n 157 GLY 158 A GLU 159 n 158 GLU 159 A THR 160 n 159 THR 160 A GLU 161 n 160 GLU 161 A LYS 162 n 161 LYS 162 A THR 163 n 162 THR 163 A GLY 164 n 163 GLY 164 A THR 165 n 164 THR 165 A MET 166 n 165 MET 166 A VAL 167 n 166 VAL 167 A ARG 168 n 167 ARG 168 A PHE 169 n 168 PHE 169 A TRP 170 n 169 TRP 170 A PRO 171 n 170 PRO 171 A SER 172 n 171 SER 172 A LEU 173 n 172 LEU 173 A GLU 174 n 173 GLU 174 A THR 175 n 174 THR 175 A PHE 176 n 175 PHE 176 A THR 177 n 176 THR 177 A ASN 178 n 177 ASN 178 A VAL 179 n 178 VAL 179 A THR 180 n 179 THR 180 A GLU 181 n 180 GLU 181 A PHE 182 n 181 PHE 182 A GLU 183 n 182 GLU 183 A TYR 184 n 183 TYR 184 A GLU 185 n 184 GLU 185 A ILE 186 n 185 ILE 186 A LEU 187 n 186 LEU 187 A ALA 188 n 187 ALA 188 A LYS 189 n 188 LYS 189 A ARG 190 n 189 ARG 190 A LEU 191 n 190 LEU 191 A ARG 192 n 191 ARG 192 A GLU 193 n 192 GLU 193 A LEU 194 n 193 LEU 194 A SER 195 n 194 SER 195 A PHE 196 n 195 PHE 196 A LEU 197 n 196 LEU 197 A ASN 198 n 197 ASN 198 A SER 199 n 198 SER 199 A GLY 200 n 199 GLY 200 A VAL 201 n 200 VAL 201 A SER 202 n 201 SER 202 A ILE 203 n 202 ILE 203 A ARG 204 n 203 ARG 204 A LEU 205 n 204 LEU 205 A ARG 206 n 205 ARG 206 A ASP 207 n 206 ASP 207 A LYS 208 n 207 LYS 208 A ARG 209 n 208 ARG 209 A ASP 210 n 209 ASP 210 A GLY 211 n 210 GLY 211 A LYS 212 n 211 LYS 212 A GLU 213 n 212 GLU 213 A ASP 214 n 213 ASP 214 A HIS 215 n 214 HIS 215 A PHE 216 n 215 PHE 216 A HIS 217 n 216 HIS 217 A n 217 218 A n 218 219 A n 219 220 A 0.2060000 0.1970000 0.2990000 999 10. author_defined_assembly 1 monomeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A O ASP 214 A O ASP 213 A N LEU 205 A N LEU 204 A O ARG 204 A O ARG 203 A N ILE 59 A N ILE 58 A O ILE 60 A O ILE 59 A N GLN 72 A N GLN 71 A O VAL 69 A O VAL 68 A N PHE 169 A N PHE 168 A O GLY 164 A O GLY 163 A N GLN 135 A N GLN 134 A O LEU 130 A O LEU 129 A N TYR 145 A N TYR 144 A O ARG 142 A O ARG 141 A N ALA 155 A N ALA 154 1 A CG LYS 14 A CG LYS 13 1 Y 1 A CD LYS 14 A CD LYS 13 1 Y 1 A CE LYS 14 A CE LYS 13 1 Y 1 A NZ LYS 14 A NZ LYS 13 1 Y 1 A CG ASP 49 A CG ASP 48 1 Y 1 A OD1 ASP 49 A OD1 ASP 48 1 Y 1 A OD2 ASP 49 A OD2 ASP 48 1 Y 1 A CD LYS 57 A CD LYS 56 1 Y 1 A CE LYS 57 A CE LYS 56 1 Y 1 A NZ LYS 57 A NZ LYS 56 1 Y 1 A CG LYS 103 A CG LYS 102 1 Y 1 A CD LYS 103 A CD LYS 102 1 Y 1 A CE LYS 103 A CE LYS 102 1 Y 1 A NZ LYS 103 A NZ LYS 102 1 Y 1 A CG GLN 128 A CG GLN 127 1 Y 1 A CD GLN 128 A CD GLN 127 1 Y 1 A OE1 GLN 128 A OE1 GLN 127 1 Y 1 A NE2 GLN 128 A NE2 GLN 127 1 Y 1 A CG GLU 159 A CG GLU 158 1 Y 1 A CD GLU 159 A CD GLU 158 1 Y 1 A OE1 GLU 159 A OE1 GLU 158 1 Y 1 A OE2 GLU 159 A OE2 GLU 158 1 Y 1 A CD LYS 162 A CD LYS 161 1 Y 1 A CE LYS 162 A CE LYS 161 1 Y 1 A NZ LYS 162 A NZ LYS 161 1 Y 1 A CD GLU 181 A CD GLU 180 1 Y 1 A OE1 GLU 181 A OE1 GLU 180 1 Y 1 A OE2 GLU 181 A OE2 GLU 180 1 Y 1 A CD LYS 208 A CD LYS 207 1 Y 1 A CE LYS 208 A CE LYS 207 1 Y 1 A NZ LYS 208 A NZ LYS 207 1 Y 1 A CD GLU 213 A CD GLU 212 1 Y 1 A OE1 GLU 213 A OE1 GLU 212 1 Y 1 A OE2 GLU 213 A OE2 GLU 212 1 Y 1 A SER 2 A SER 1 1 Y 1 A ASN 3 A ASN 2 1 Y 1 A SER 4 A SER 3 1 Y 1 A TYR 5 A TYR 4 1 Y 1 A ASP 6 A ASP 5 1 Y 1 A SER 7 A SER 6 1 Y 1 A SER 8 A SER 7 1 Y 1 A SER 9 A SER 8 1 Y 1 A ILE 10 A ILE 9 1 Y 1 A LYS 11 A LYS 10 1 Y 1 A HIS 83 A HIS 82 1 Y 1 A PRO 84 A PRO 83 1 Y 1 A GLU 85 A GLU 84 1 Y 1 A GLU 86 A GLU 85 1 Y 1 A GLY 87 A GLY 86 1 Y 1 A ASP 105 A ASP 104 1 Y 1 A ASP 106 A ASP 105 1 Y 1 A ASN 107 A ASN 106 1 Y 1 A SER 108 A SER 107 1 Y 1 A TYR 109 A TYR 108 1 Y 1 A LYS 110 A LYS 109 1 Y 1 A VAL 111 A VAL 110 1 Y 1 A TYR 218 A TYR 217 1 Y 1 A GLU 219 A GLU 218 1 Y 1 A GLY 220 A GLY 219 1 Y 1 -15.99 2.10 128.40 112.41 A A A C N CD ARG PRO PRO 22 23 23 Y 1 A HIS 99 34.57 50.84 1 A HIS 136 177.56 154.97 1 A ASN 178 72.85 -83.09 1 A ASP 210 -150.19 1.32 STRAINED GEOMETRY AND DIFFERENCE DENSITY AT PRO 23 SUGGEST IT MIGHT HAVE MORE THAN ONE CONFORMATION. ASN 178 IS IN A DISALLOWED REGION OF THE RAMACHANDRAN PLOT. IT ADOPTS A CLASSICAL C-7 AXIAL CONFORMATION TYPICAL OF GLYCINE RESIDUES WITH A CO(N-1)..N(N+1) H-BOND. 0.2900000 0.1950000 0.2060000 0.2060000 2.3 19.8 999 9455 9455 10.0 95. RANDOM 1 TNT BCORREL THROUGHOUT 0.0 DIFFERENCE FOURIER WILD-TYPE 24KDA FRAGMENT/NOVOBIOCIN COMPLEX TNT PROGEO TNT 241. 1.0 2.3 19.8 89 1592 44 0 1459 0.012 1531 3.0 1.366 2076 3.0 18.9 886 0.0 0 0.010 32 5.0 0.015 228 10.0 2.10 1521 20.00 0.051 32 8.0 23.7 2.3 19.8 1AJ6 9455 0. 0.0650000 0.0650000 1 8.5 5.1 94.8 0.1310000 2.30 2.38 5.6 0.1310000 1 5.2 97. model building CCP4 refinement TNT 5D data reduction MOSFLM data scaling CCP4 phasing CCP4 NOVOBIOCIN-RESISTANT MUTANT (R136H) OF THE N-TERMINAL 24 KDA FRAGMENT OF DNA GYRASE B COMPLEXED WITH NOVOBIOCIN AT 2.3 ANGSTROMS RESOLUTION 1 N N 2 N N 3 N N A LEU 13 A LEU 12 HELX_P A LYS 21 A LYS 20 1 1 9 A PRO 23 A PRO 22 HELX_P A ILE 27 A ILE 26 1 2 5 A THR 34 A THR 33 HELX_P A LEU 52 A LEU 51 1 3 19 A ALA 90 A ALA 89 HELX_P A THR 96 A THR 95 1 4 7 A VAL 120 A VAL 119 HELX_P A ALA 125 A ALA 124 1 5 6 A TYR 184 A TYR 183 HELX_P A ASN 198 A ASN 197 1 6 15 TOPOISOMERASE TOPOISOMERASE, GYRASE, NOVOBIOCIN, ANTIBIOTIC, RESISTANT MUTANT GYRB_ECOLI UNP 1 1 P06982 SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIVTIHADNSVSVQDDGRGIPTG IHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETE KTGTMVRFWPSLETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKEDHFHYEGGIKAFVEYLNKNKTPIHPNIF YFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIA VVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLA GLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGRD EYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLYKVKKGKQEQYIKDDEAMDQYQISIAL DGATLHTNASAPALAGEALEKLVSEYNATQKMINRMERRYPKAMLKELIYQPTLTEADLSDEQTVTRWVNALVSELNDKE QHGSQWKFDVHTNAEQNLFEPIVRVRTHGVDTDYPLDHEFITGGEYRRICTLGEKLRGLLEEDAFIERGERRQPVASFEQ ALDWLVKESRRGLSIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAIAADQLFTTLMGDAVEPRRAFIEENALKAAN IDI 1 219 1AJ6 2 220 P06982 A 1 1 219 1 ARG engineered mutation HIS 136 1AJ6 A P06982 UNP 135 135 8 anti-parallel parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel A GLY 211 A GLY 210 A PHE 216 A PHE 215 A ILE 203 A ILE 202 A LYS 208 A LYS 207 A ILE 59 A ILE 58 A HIS 64 A HIS 63 A SER 68 A SER 67 A ASP 73 A ASP 72 A GLY 164 A GLY 163 A PRO 171 A PRO 170 A SER 127 A SER 126 A HIS 136 A HIS 135 A LYS 139 A LYS 138 A TYR 145 A TYR 144 A ALA 155 A ALA 154 A GLU 159 A GLU 158 BINDING SITE FOR RESIDUE NOV A 1 A NOV 1 Software 10 A ASN 46 A ASN 45 10 1_555 A GLU 50 A GLU 49 10 1_555 A ASP 73 A ASP 72 10 1_555 A ARG 76 A ARG 75 10 1_555 A ILE 78 A ILE 77 10 1_555 A PRO 79 A PRO 78 10 1_555 A HOH 227 C HOH 10 1_555 A HOH 231 C HOH 10 1_555 A HOH 265 C HOH 10 1_555 A HOH 270 C HOH 10 1_555 19 P 21 21 21