0.021692
0.000000
0.005731
0.000000
0.016420
0.000000
0.000000
0.000000
0.014149
0.00000
0.00000
0.00000
Wedemayer, G.J.
Wang, L.H.
Patten, P.A.
Schultz, P.G.
Stevens, R.C.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
2
90.00
104.80
90.00
46.100
60.900
73.100
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C11 H13 N O7 P -1
302.197
5-(PARA-NITROPHENYL PHOSPHONATE)-PENTANOIC ACID
non-polymer
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
US
Science
SCIEAS
0038
0036-8075
276
1665
1669
10.1126/science.276.5319.1665
9180069
Structural insights into the evolution of an antibody combining site.
1997
UK
J.Mol.Biol.
JMOBAK
0070
0022-2836
268
390
Crystal Structures of the Free and Liganded Form of an Esterolytic Catalytic Antibody
1997
US
Science
SCIEAS
0038
0036-8075
271
1086
The Immunological Evolution of Catalysis
1996
US
Proc.Natl.Acad.Sci.USA
PNASA6
0040
0027-8424
90
1160
A Genetic Approach to the Generation of Antibodies with Enhanced Catalytic Activities
1993
10.2210/pdb1aj7/pdb
pdb_00001aj7
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
IMAGE PLATE
1996-05
MARRESEARCH
M
x-ray
1
1.08
1.0
BL7-1
SSRL
1.08
SYNCHROTRON
SSRL BEAMLINE BL7-1
23464.988
IMMUNOGLOBULIN 48G7 FAB (LIGHT CHAIN)
VARIABLE DOMAINS OF LIGHT AND HEAVY CHAINS AND CONSTANT DOMAINS OF LIGHT AND HEAVY CHAINS
1
man
polymer
23062.750
IMMUNOGLOBULIN 48G7 FAB (HEAVY CHAIN)
VARIABLE DOMAINS OF LIGHT AND HEAVY CHAINS AND CONSTANT DOMAINS OF LIGHT AND HEAVY CHAINS
1
man
polymer
302.197
5-(PARA-NITROPHENYL PHOSPHONATE)-PENTANOIC ACID
1
syn
non-polymer
no
no
DIQMTQSPSSLSASLGERVSLTCRASQEISGYLSWLQQKPDGTIKRLIYAASTLDSGVPKRFSGSRSGSDYSLTISSLES
EDFADYYCLQYASYPRTFGGGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQ
ESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC
DIQMTQSPSSLSASLGERVSLTCRASQEISGYLSWLQQKPDGTIKRLIYAASTLDSGVPKRFSGSRSGSDYSLTISSLES
EDFADYYCLQYASYPRTFGGGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQ
ESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC
L
polypeptide(L)
no
no
QVQLQQSGAELVKPGASVKLSCTASGFNIKDTYMHWVKQRPEQGLEWIGRIDPANGNTKYDPKFQGKATITADTSSNTAY
LQLSSLTSEDTAVYYCASYYGIYWGQGTTLTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGAL
TSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSC
QVQLQQSGAELVKPGASVKLSCTASGFNIKDTYMHWVKQRPEQGLEWIGRIDPANGNTKYDPKFQGKATITADTSSNTAY
LQLSSLTSEDTAVYYCASYYGIYWGQGTTLTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGAL
TSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSC
H
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
house mouse
Mus
Escherichia
Escherichia coli
sample
EACH CHAIN IS A FUSION POLYPEPTIDE WHICH IS PART HUMAN AND PART MOUSE
48G7
CONSTANT DOMAINS OF LIGHT AND HEAVY CHAINS
10090
Mus musculus
511693
Escherichia coli BL21
BL21
PSAL143
human
Homo
Escherichia
Escherichia coli
sample
EACH CHAIN IS A FUSION POLYPEPTIDE WHICH IS PART HUMAN AND PART MOUSE
48G7
CONSTANT DOMAINS OF LIGHT AND HEAVY CHAINS
9606
Homo sapiens
511693
Escherichia coli BL21
BL21
PSAL143
1
2.13
42.29
8.0
10-15 MG/ML FAB IN 100MM NACL, 10MM TRIS PH 8.0, 1MM METHIONINE, 1MM SODIUM AZIDE, 0.5 MM EDTA.
database_2
pdbx_initial_refinement_model
struct_ref_seq_dif
struct_site
repository
Initial release
Version format compliance
Version format compliance
Database references
Derived calculations
Refinement description
1
0
1997-11-12
1
1
2008-03-24
1
2
2011-07-13
1
3
2023-08-02
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_ref_seq_dif.details
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
Y
BNL
1997-05-15
REL
REL
NPE
5-(PARA-NITROPHENYL PHOSPHONATE)-PENTANOIC ACID
1GAF
PDB ENTRY 1GAF
PDB
experimental model
NPE
1
3
NPE
NPE
217
H
ASP
1
n
1
ASP
1
L
ILE
2
n
2
ILE
2
L
GLN
3
n
3
GLN
3
L
MET
4
n
4
MET
4
L
THR
5
n
5
THR
5
L
GLN
6
n
6
GLN
6
L
SER
7
n
7
SER
7
L
PRO
8
n
8
PRO
8
L
SER
9
n
9
SER
9
L
SER
10
n
10
SER
10
L
LEU
11
n
11
LEU
11
L
SER
12
n
12
SER
12
L
ALA
13
n
13
ALA
13
L
SER
14
n
14
SER
14
L
LEU
15
n
15
LEU
15
L
GLY
16
n
16
GLY
16
L
GLU
17
n
17
GLU
17
L
ARG
18
n
18
ARG
18
L
VAL
19
n
19
VAL
19
L
SER
20
n
20
SER
20
L
LEU
21
n
21
LEU
21
L
THR
22
n
22
THR
22
L
CYS
23
n
23
CYS
23
L
ARG
24
n
24
ARG
24
L
ALA
25
n
25
ALA
25
L
SER
26
n
26
SER
26
L
GLN
27
n
27
GLN
27
L
GLU
28
n
28
GLU
28
L
ILE
29
n
29
ILE
29
L
SER
30
n
30
SER
30
L
GLY
31
n
31
GLY
31
L
TYR
32
n
32
TYR
32
L
LEU
33
n
33
LEU
33
L
SER
34
n
34
SER
34
L
TRP
35
n
35
TRP
35
L
LEU
36
n
36
LEU
36
L
GLN
37
n
37
GLN
37
L
GLN
38
n
38
GLN
38
L
LYS
39
n
39
LYS
39
L
PRO
40
n
40
PRO
40
L
ASP
41
n
41
ASP
41
L
GLY
42
n
42
GLY
42
L
THR
43
n
43
THR
43
L
ILE
44
n
44
ILE
44
L
LYS
45
n
45
LYS
45
L
ARG
46
n
46
ARG
46
L
LEU
47
n
47
LEU
47
L
ILE
48
n
48
ILE
48
L
TYR
49
n
49
TYR
49
L
ALA
50
n
50
ALA
50
L
ALA
51
n
51
ALA
51
L
SER
52
n
52
SER
52
L
THR
53
n
53
THR
53
L
LEU
54
n
54
LEU
54
L
ASP
55
n
55
ASP
55
L
SER
56
n
56
SER
56
L
GLY
57
n
57
GLY
57
L
VAL
58
n
58
VAL
58
L
PRO
59
n
59
PRO
59
L
LYS
60
n
60
LYS
60
L
ARG
61
n
61
ARG
61
L
PHE
62
n
62
PHE
62
L
SER
63
n
63
SER
63
L
GLY
64
n
64
GLY
64
L
SER
65
n
65
SER
65
L
ARG
66
n
66
ARG
66
L
SER
67
n
67
SER
67
L
GLY
68
n
68
GLY
68
L
SER
69
n
69
SER
69
L
ASP
70
n
70
ASP
70
L
TYR
71
n
71
TYR
71
L
SER
72
n
72
SER
72
L
LEU
73
n
73
LEU
73
L
THR
74
n
74
THR
74
L
ILE
75
n
75
ILE
75
L
SER
76
n
76
SER
76
L
SER
77
n
77
SER
77
L
LEU
78
n
78
LEU
78
L
GLU
79
n
79
GLU
79
L
SER
80
n
80
SER
80
L
GLU
81
n
81
GLU
81
L
ASP
82
n
82
ASP
82
L
PHE
83
n
83
PHE
83
L
ALA
84
n
84
ALA
84
L
ASP
85
n
85
ASP
85
L
TYR
86
n
86
TYR
86
L
TYR
87
n
87
TYR
87
L
CYS
88
n
88
CYS
88
L
LEU
89
n
89
LEU
89
L
GLN
90
n
90
GLN
90
L
TYR
91
n
91
TYR
91
L
ALA
92
n
92
ALA
92
L
SER
93
n
93
SER
93
L
TYR
94
n
94
TYR
94
L
PRO
95
n
95
PRO
95
L
ARG
96
n
96
ARG
96
L
THR
97
n
97
THR
97
L
PHE
98
n
98
PHE
98
L
GLY
99
n
99
GLY
99
L
GLY
100
n
100
GLY
100
L
GLY
101
n
101
GLY
101
L
THR
102
n
102
THR
102
L
LYS
103
n
103
LYS
103
L
VAL
104
n
104
VAL
104
L
GLU
105
n
105
GLU
105
L
ILE
106
n
106
ILE
106
L
LYS
107
n
107
LYS
107
L
ARG
108
n
108
ARG
108
L
THR
109
n
109
THR
109
L
VAL
110
n
110
VAL
110
L
ALA
111
n
111
ALA
111
L
ALA
112
n
112
ALA
112
L
PRO
113
n
113
PRO
113
L
SER
114
n
114
SER
114
L
VAL
115
n
115
VAL
115
L
PHE
116
n
116
PHE
116
L
ILE
117
n
117
ILE
117
L
PHE
118
n
118
PHE
118
L
PRO
119
n
119
PRO
119
L
PRO
120
n
120
PRO
120
L
SER
121
n
121
SER
121
L
ASP
122
n
122
ASP
122
L
GLU
123
n
123
GLU
123
L
GLN
124
n
124
GLN
124
L
LEU
125
n
125
LEU
125
L
LYS
126
n
126
LYS
126
L
SER
127
n
127
SER
127
L
GLY
128
n
128
GLY
128
L
THR
129
n
129
THR
129
L
ALA
130
n
130
ALA
130
L
SER
131
n
131
SER
131
L
VAL
132
n
132
VAL
132
L
VAL
133
n
133
VAL
133
L
CYS
134
n
134
CYS
134
L
LEU
135
n
135
LEU
135
L
LEU
136
n
136
LEU
136
L
ASN
137
n
137
ASN
137
L
ASN
138
n
138
ASN
138
L
PHE
139
n
139
PHE
139
L
TYR
140
n
140
TYR
140
L
PRO
141
n
141
PRO
141
L
ARG
142
n
142
ARG
142
L
GLU
143
n
143
GLU
143
L
ALA
144
n
144
ALA
144
L
LYS
145
n
145
LYS
145
L
VAL
146
n
146
VAL
146
L
GLN
147
n
147
GLN
147
L
TRP
148
n
148
TRP
148
L
LYS
149
n
149
LYS
149
L
VAL
150
n
150
VAL
150
L
ASP
151
n
151
ASP
151
L
ASN
152
n
152
ASN
152
L
ALA
153
n
153
ALA
153
L
LEU
154
n
154
LEU
154
L
GLN
155
n
155
GLN
155
L
SER
156
n
156
SER
156
L
GLY
157
n
157
GLY
157
L
ASN
158
n
158
ASN
158
L
SER
159
n
159
SER
159
L
GLN
160
n
160
GLN
160
L
GLU
161
n
161
GLU
161
L
SER
162
n
162
SER
162
L
VAL
163
n
163
VAL
163
L
THR
164
n
164
THR
164
L
GLU
165
n
165
GLU
165
L
GLN
166
n
166
GLN
166
L
ASP
167
n
167
ASP
167
L
SER
168
n
168
SER
168
L
LYS
169
n
169
LYS
169
L
ASP
170
n
170
ASP
170
L
SER
171
n
171
SER
171
L
THR
172
n
172
THR
172
L
TYR
173
n
173
TYR
173
L
SER
174
n
174
SER
174
L
LEU
175
n
175
LEU
175
L
SER
176
n
176
SER
176
L
SER
177
n
177
SER
177
L
THR
178
n
178
THR
178
L
LEU
179
n
179
LEU
179
L
THR
180
n
180
THR
180
L
LEU
181
n
181
LEU
181
L
SER
182
n
182
SER
182
L
LYS
183
n
183
LYS
183
L
ALA
184
n
184
ALA
184
L
ASP
185
n
185
ASP
185
L
TYR
186
n
186
TYR
186
L
GLU
187
n
187
GLU
187
L
LYS
188
n
188
LYS
188
L
HIS
189
n
189
HIS
189
L
LYS
190
n
190
LYS
190
L
VAL
191
n
191
VAL
191
L
TYR
192
n
192
TYR
192
L
ALA
193
n
193
ALA
193
L
CYS
194
n
194
CYS
194
L
GLU
195
n
195
GLU
195
L
VAL
196
n
196
VAL
196
L
THR
197
n
197
THR
197
L
HIS
198
n
198
HIS
198
L
GLN
199
n
199
GLN
199
L
GLY
200
n
200
GLY
200
L
LEU
201
n
201
LEU
201
L
SER
202
n
202
SER
202
L
SER
203
n
203
SER
203
L
PRO
204
n
204
PRO
204
L
VAL
205
n
205
VAL
205
L
THR
206
n
206
THR
206
L
LYS
207
n
207
LYS
207
L
SER
208
n
208
SER
208
L
PHE
209
n
209
PHE
209
L
ASN
210
n
210
ASN
210
L
ARG
211
n
211
ARG
211
L
GLY
212
n
212
GLY
212
L
GLU
213
n
213
GLU
213
L
CYS
214
n
214
CYS
214
L
GLN
1
n
1
GLN
1
H
VAL
2
n
2
VAL
2
H
GLN
3
n
3
GLN
3
H
LEU
4
n
4
LEU
4
H
GLN
5
n
5
GLN
5
H
GLN
6
n
6
GLN
6
H
SER
7
n
7
SER
7
H
GLY
8
n
8
GLY
8
H
ALA
9
n
9
ALA
9
H
GLU
10
n
10
GLU
10
H
LEU
11
n
11
LEU
11
H
VAL
12
n
12
VAL
12
H
LYS
13
n
13
LYS
13
H
PRO
14
n
14
PRO
14
H
GLY
15
n
15
GLY
15
H
ALA
16
n
16
ALA
16
H
SER
17
n
17
SER
17
H
VAL
18
n
18
VAL
18
H
LYS
19
n
19
LYS
19
H
LEU
20
n
20
LEU
20
H
SER
21
n
21
SER
21
H
CYS
22
n
22
CYS
22
H
THR
23
n
23
THR
23
H
ALA
24
n
24
ALA
24
H
SER
25
n
25
SER
25
H
GLY
26
n
26
GLY
26
H
PHE
27
n
27
PHE
27
H
ASN
28
n
28
ASN
28
H
ILE
29
n
29
ILE
29
H
LYS
30
n
30
LYS
30
H
ASP
31
n
31
ASP
31
H
THR
32
n
32
THR
32
H
TYR
33
n
33
TYR
33
H
MET
34
n
34
MET
34
H
HIS
35
n
35
HIS
35
H
TRP
36
n
36
TRP
36
H
VAL
37
n
37
VAL
37
H
LYS
38
n
38
LYS
38
H
GLN
39
n
39
GLN
39
H
ARG
40
n
40
ARG
40
H
PRO
41
n
41
PRO
41
H
GLU
42
n
42
GLU
42
H
GLN
43
n
43
GLN
43
H
GLY
44
n
44
GLY
44
H
LEU
45
n
45
LEU
45
H
GLU
46
n
46
GLU
46
H
TRP
47
n
47
TRP
47
H
ILE
48
n
48
ILE
48
H
GLY
49
n
49
GLY
49
H
ARG
50
n
50
ARG
50
H
ILE
51
n
51
ILE
51
H
ASP
52
n
52
ASP
52
H
PRO
52
n
53
A
PRO
52
H
ALA
53
n
54
ALA
53
H
ASN
54
n
55
ASN
54
H
GLY
55
n
56
GLY
55
H
ASN
56
n
57
ASN
56
H
THR
57
n
58
THR
57
H
LYS
58
n
59
LYS
58
H
TYR
59
n
60
TYR
59
H
ASP
60
n
61
ASP
60
H
PRO
61
n
62
PRO
61
H
LYS
62
n
63
LYS
62
H
PHE
63
n
64
PHE
63
H
GLN
64
n
65
GLN
64
H
GLY
65
n
66
GLY
65
H
LYS
66
n
67
LYS
66
H
ALA
67
n
68
ALA
67
H
THR
68
n
69
THR
68
H
ILE
69
n
70
ILE
69
H
THR
70
n
71
THR
70
H
ALA
71
n
72
ALA
71
H
ASP
72
n
73
ASP
72
H
THR
73
n
74
THR
73
H
SER
74
n
75
SER
74
H
SER
75
n
76
SER
75
H
ASN
76
n
77
ASN
76
H
THR
77
n
78
THR
77
H
ALA
78
n
79
ALA
78
H
TYR
79
n
80
TYR
79
H
LEU
80
n
81
LEU
80
H
GLN
81
n
82
GLN
81
H
LEU
82
n
83
LEU
82
H
SER
83
n
84
SER
83
H
SER
84
n
85
SER
84
H
LEU
85
n
86
LEU
85
H
THR
86
n
87
THR
86
H
SER
87
n
88
SER
87
H
GLU
88
n
89
GLU
88
H
ASP
89
n
90
ASP
89
H
THR
90
n
91
THR
90
H
ALA
91
n
92
ALA
91
H
VAL
92
n
93
VAL
92
H
TYR
93
n
94
TYR
93
H
TYR
94
n
95
TYR
94
H
CYS
95
n
96
CYS
95
H
ALA
96
n
97
ALA
96
H
SER
97
n
98
SER
97
H
TYR
98
n
99
TYR
98
H
TYR
99
n
100
TYR
99
H
GLY
100
n
101
GLY
100
H
ILE
101
n
102
ILE
101
H
TYR
102
n
103
TYR
102
H
TRP
103
n
104
TRP
103
H
GLY
104
n
105
GLY
104
H
GLN
105
n
106
GLN
105
H
GLY
106
n
107
GLY
106
H
THR
107
n
108
THR
107
H
THR
108
n
109
THR
108
H
LEU
109
n
110
LEU
109
H
THR
110
n
111
THR
110
H
VAL
111
n
112
VAL
111
H
SER
112
n
113
SER
112
H
SER
113
n
114
SER
113
H
ALA
114
n
115
ALA
114
H
SER
115
n
116
SER
115
H
THR
116
n
117
THR
116
H
LYS
117
n
118
LYS
117
H
GLY
118
n
119
GLY
118
H
PRO
119
n
120
PRO
119
H
SER
120
n
121
SER
120
H
VAL
121
n
122
VAL
121
H
PHE
122
n
123
PHE
122
H
PRO
123
n
124
PRO
123
H
LEU
124
n
125
LEU
124
H
ALA
125
n
126
ALA
125
H
PRO
126
n
127
PRO
126
H
SER
127
n
128
SER
127
H
SER
128
n
129
SER
128
H
LYS
129
n
130
LYS
129
H
SER
130
n
131
SER
130
H
THR
131
n
132
THR
131
H
SER
132
n
133
SER
132
H
GLY
133
n
134
GLY
133
H
GLY
134
n
135
GLY
134
H
THR
135
n
136
THR
135
H
ALA
136
n
137
ALA
136
H
ALA
137
n
138
ALA
137
H
LEU
138
n
139
LEU
138
H
GLY
139
n
140
GLY
139
H
CYS
140
n
141
CYS
140
H
LEU
141
n
142
LEU
141
H
VAL
142
n
143
VAL
142
H
LYS
143
n
144
LYS
143
H
ASP
144
n
145
ASP
144
H
TYR
145
n
146
TYR
145
H
PHE
146
n
147
PHE
146
H
PRO
147
n
148
PRO
147
H
GLU
148
n
149
GLU
148
H
PRO
149
n
150
PRO
149
H
VAL
150
n
151
VAL
150
H
THR
151
n
152
THR
151
H
VAL
152
n
153
VAL
152
H
SER
153
n
154
SER
153
H
TRP
154
n
155
TRP
154
H
ASN
155
n
156
ASN
155
H
SER
156
n
157
SER
156
H
GLY
157
n
158
GLY
157
H
ALA
158
n
159
ALA
158
H
LEU
159
n
160
LEU
159
H
THR
160
n
161
THR
160
H
SER
161
n
162
SER
161
H
GLY
162
n
163
GLY
162
H
VAL
163
n
164
VAL
163
H
HIS
164
n
165
HIS
164
H
THR
165
n
166
THR
165
H
PHE
166
n
167
PHE
166
H
PRO
167
n
168
PRO
167
H
ALA
168
n
169
ALA
168
H
VAL
169
n
170
VAL
169
H
LEU
170
n
171
LEU
170
H
GLN
171
n
172
GLN
171
H
SER
172
n
173
SER
172
H
SER
173
n
174
SER
173
H
GLY
174
n
175
GLY
174
H
LEU
175
n
176
LEU
175
H
TYR
176
n
177
TYR
176
H
SER
177
n
178
SER
177
H
LEU
178
n
179
LEU
178
H
SER
179
n
180
SER
179
H
SER
180
n
181
SER
180
H
VAL
181
n
182
VAL
181
H
VAL
182
n
183
VAL
182
H
THR
183
n
184
THR
183
H
VAL
184
n
185
VAL
184
H
PRO
185
n
186
PRO
185
H
SER
186
n
187
SER
186
H
SER
187
n
188
SER
187
H
SER
188
n
189
SER
188
H
LEU
189
n
190
LEU
189
H
GLY
190
n
191
GLY
190
H
THR
191
n
192
THR
191
H
GLN
192
n
193
GLN
192
H
THR
193
n
194
THR
193
H
TYR
194
n
195
TYR
194
H
ILE
195
n
196
ILE
195
H
CYS
196
n
197
CYS
196
H
ASN
197
n
198
ASN
197
H
VAL
198
n
199
VAL
198
H
ASN
199
n
200
ASN
199
H
HIS
200
n
201
HIS
200
H
LYS
201
n
202
LYS
201
H
PRO
202
n
203
PRO
202
H
SER
203
n
204
SER
203
H
ASN
204
n
205
ASN
204
H
THR
205
n
206
THR
205
H
LYS
206
n
207
LYS
206
H
VAL
207
n
208
VAL
207
H
ASP
208
n
209
ASP
208
H
LYS
209
n
210
LYS
209
H
LYS
210
n
211
LYS
210
H
VAL
211
n
212
VAL
211
H
GLU
212
n
213
GLU
212
H
PRO
213
n
214
PRO
213
H
LYS
214
n
215
LYS
214
H
SER
215
n
216
SER
215
H
CYS
216
n
217
CYS
216
H
author_and_software_defined_assembly
PISA
2
dimeric
4310
-22
19270
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
L
O
THR
5
A
O
THR
5
L
N
ARG
24
A
N
ARG
24
L
O
VAL
19
A
O
VAL
19
L
N
ILE
75
A
N
ILE
75
L
O
ASP
70
A
O
ASP
70
L
N
SER
67
A
N
SER
67
L
O
LEU
11
A
O
LEU
11
L
N
LYS
103
A
N
LYS
103
L
O
THR
102
A
O
THR
102
L
N
TYR
86
A
N
TYR
86
L
O
ASP
85
A
O
ASP
85
L
N
GLN
38
A
N
GLN
38
L
O
TRP
35
A
O
TRP
35
L
N
ILE
48
A
N
ILE
48
L
O
SER
114
A
O
SER
114
L
N
ASN
137
A
N
ASN
137
L
O
ALA
130
A
O
ALA
130
L
N
LEU
181
A
N
LEU
181
L
O
SER
176
A
O
SER
176
L
N
SER
162
A
N
SER
162
L
O
LYS
145
A
O
LYS
145
L
N
THR
197
A
N
THR
197
L
O
TYR
192
A
O
TYR
192
L
N
PHE
209
A
N
PHE
209
H
O
GLN
3
B
O
GLN
3
H
N
SER
25
B
N
SER
25
H
O
VAL
18
B
O
VAL
18
H
N
LEU
82
B
N
LEU
83
H
O
THR
77
B
O
THR
78
H
N
ASP
72
B
N
ASP
73
H
O
GLU
10
B
O
GLU
10
H
N
THR
110
B
N
THR
111
H
O
THR
107
B
O
THR
108
H
N
TYR
93
B
N
TYR
94
H
O
VAL
92
B
O
VAL
93
H
N
GLN
39
B
N
GLN
39
H
O
MET
34
B
O
MET
34
H
N
ILE
51
B
N
ILE
51
H
O
ARG
50
B
O
ARG
50
H
N
LYS
58
B
N
LYS
59
H
O
SER
120
B
O
SER
121
H
N
LYS
143
B
N
LYS
144
H
O
ALA
136
B
O
ALA
137
H
N
VAL
184
B
N
VAL
185
H
O
VAL
181
B
O
VAL
182
H
N
HIS
164
B
N
HIS
165
H
O
THR
151
B
O
THR
152
H
N
ASN
199
B
N
ASN
200
H
O
CYS
196
B
O
CYS
197
H
N
LYS
209
B
N
LYS
210
1
H
H
OE2
CG
GLU
PRO
42
213
1.60
1_555
2_645
1
H
H
OE1
CB
GLU
PRO
42
213
1.93
1_555
2_645
1
L
ALA
51
71.99
-41.17
1
L
ASN
152
73.60
-6.89
1
L
ARG
211
-68.20
93.77
1
H
ILE
29
-37.00
-37.48
1
H
THR
32
69.74
161.09
1
H
TYR
33
62.78
104.21
1
H
LYS
66
-131.78
-36.45
1
H
ALA
91
-171.08
-175.17
1
H
TYR
99
69.33
-3.04
1
H
SER
128
-21.67
-72.16
1
H
PRO
147
-94.29
-155.95
0.258
0.217
0.217
2.1
20.
23005
10.
99.5
1
2.0
MOLECULAR REPLACEMENT
PDB ENTRY 1GAF
2.1
20.
0
4067
32
0
4035
0.008
1.542
0.286
0.233
2.11
35
339
60
10.
2.1
20.
1AJ7
23005
0.069
0.069
1
15.
3.5
99.5
0.204
2.1
2.17
5.2
0.204
3.5
98.1
data reduction
DENZO
data scaling
SCALEPACK
phasing
AMoRE
refinement
X-PLOR
3.8
IMMUNOGLOBULIN 48G7 GERMLINE FAB ANTIBODY COMPLEXED WITH HAPTEN 5-(PARA-NITROPHENYL PHOSPHONATE)-PENTANOIC ACID. AFFINITY MATURATION OF AN ESTEROLYTIC ANTIBODY
1
N
N
2
N
N
3
N
N
L
SER
80
A
SER
80
HELX_P
L
ASP
82
A
ASP
82
5
1
3
L
ASP
122
A
ASP
122
HELX_P
L
SER
127
A
SER
127
1
2
6
L
LYS
183
A
LYS
183
HELX_P
L
GLU
187
A
GLU
187
1
3
5
H
ILE
29
B
ILE
29
HELX_P
H
ASP
31
B
ASP
31
5
4
3
H
PRO
61
B
PRO
62
HELX_P
H
PHE
63
B
PHE
64
5
5
3
H
SER
87
B
SER
88
HELX_P
H
ASP
89
B
ASP
90
5
6
3
H
TYR
98
B
TYR
99
HELX_P
H
GLY
100
B
GLY
101
5
7
3
H
ASN
155
B
ASN
156
HELX_P
H
GLY
157
B
GLY
158
5
8
3
H
LYS
201
B
LYS
202
HELX_P
H
SER
203
B
SER
204
5
9
3
disulf
2.030
L
CYS
23
A
SG
CYS
23
1_555
L
CYS
88
A
SG
CYS
88
1_555
disulf
2.029
L
CYS
134
A
SG
CYS
134
1_555
L
CYS
194
A
SG
CYS
194
1_555
disulf
2.031
L
CYS
214
A
SG
CYS
214
1_555
H
CYS
216
B
SG
CYS
217
1_555
disulf
2.031
H
CYS
22
B
SG
CYS
22
1_555
H
CYS
95
B
SG
CYS
96
1_555
disulf
2.031
H
CYS
140
B
SG
CYS
141
1_555
H
CYS
196
B
SG
CYS
197
1_555
IMMUNOGLOBULIN
GERMLINE ANTIBODY, FAB, CATALYTIC ANTIBODY, AFFINITY MATURATION, IMMUNOGLOBULIN
L
SER
7
A
SER
7
1
L
PRO
8
A
PRO
8
-0.72
L
TYR
94
A
TYR
94
1
L
PRO
95
A
PRO
95
0.05
L
TYR
140
A
TYR
140
1
L
PRO
141
A
PRO
141
-0.30
H
PHE
146
B
PHE
147
1
H
PRO
147
B
PRO
148
-1.16
H
GLU
148
B
GLU
149
1
H
PRO
149
B
PRO
150
-0.32
AAD29608
GB
1
1
4768677
MDMRVSAQLLGLLLLWLSGARCDIQMTQSPSSLSASVGDRVTITCQASQDINNYLNWYQQKPGKTPKLLIYGASNLETGV
PSRFSGSGSGTDFIFTISSLQPEDIATYYCQQYDNLPLTFGGGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNN
FYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSNTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC
IGHG1_HUMAN
UNP
2
1
P01857
ASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQT
YICNVNHKPSNTKVDKKVEPKSCDKTHTCPPCPAPELLGGPSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPEVKFNW
YVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKALPAPIEKTISKAKGQPREPQVYTLPPSRDE
LTKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDSDGSFFLYSKLTVDKSRWQQGNVFSCSVMHEALHNHYT
QKSLSLSPGK
23
236
1AJ7
1
214
4768677
L
1
1
214
1
103
1AJ7
114
216
P01857
H
2
115
217
1
VAL
conflict
LEU
15
1AJ7
L
4768677
GB
37
15
1
ASP
conflict
GLU
17
1AJ7
L
4768677
GB
39
17
1
THR
conflict
SER
20
1AJ7
L
4768677
GB
42
20
1
ILE
conflict
LEU
21
1AJ7
L
4768677
GB
43
21
1
GLN
conflict
ARG
24
1AJ7
L
4768677
GB
46
24
1
ASP
conflict
GLU
28
1AJ7
L
4768677
GB
50
28
1
ASN
conflict
SER
30
1AJ7
L
4768677
GB
52
30
1
ASN
conflict
GLY
31
1AJ7
L
4768677
GB
53
31
1
ASN
conflict
SER
34
1AJ7
L
4768677
GB
56
34
1
TYR
conflict
LEU
36
1AJ7
L
4768677
GB
58
36
1
GLY
conflict
ASP
41
1AJ7
L
4768677
GB
63
41
1
LYS
conflict
GLY
42
1AJ7
L
4768677
GB
64
42
1
PRO
conflict
ILE
44
1AJ7
L
4768677
GB
66
44
1
LEU
conflict
ARG
46
1AJ7
L
4768677
GB
68
46
1
GLY
conflict
ALA
50
1AJ7
L
4768677
GB
72
50
1
ASN
conflict
THR
53
1AJ7
L
4768677
GB
75
53
1
GLU
conflict
ASP
55
1AJ7
L
4768677
GB
77
55
1
THR
conflict
SER
56
1AJ7
L
4768677
GB
78
56
1
SER
conflict
LYS
60
1AJ7
L
4768677
GB
82
60
1
GLY
conflict
ARG
66
1AJ7
L
4768677
GB
88
66
1
THR
conflict
SER
69
1AJ7
L
4768677
GB
91
69
1
PHE
conflict
TYR
71
1AJ7
L
4768677
GB
93
71
1
ILE
conflict
SER
72
1AJ7
L
4768677
GB
94
72
1
PHE
conflict
LEU
73
1AJ7
L
4768677
GB
95
73
1
GLN
conflict
GLU
79
1AJ7
L
4768677
GB
101
79
1
PRO
conflict
SER
80
1AJ7
L
4768677
GB
102
80
1
ILE
conflict
PHE
83
1AJ7
L
4768677
GB
105
83
1
THR
conflict
ASP
85
1AJ7
L
4768677
GB
107
85
1
GLN
conflict
LEU
89
1AJ7
L
4768677
GB
111
89
1
ASP
conflict
ALA
92
1AJ7
L
4768677
GB
114
92
1
ASN
conflict
SER
93
1AJ7
L
4768677
GB
115
93
1
LEU
conflict
TYR
94
1AJ7
L
4768677
GB
116
94
1
LEU
conflict
ARG
96
1AJ7
L
4768677
GB
118
96
1
ASN
conflict
SER
177
1AJ7
L
4768677
GB
199
177
4
5
4
3
4
6
4
3
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
L
MET
4
A
MET
4
L
SER
7
A
SER
7
L
VAL
19
A
VAL
19
L
ALA
25
A
ALA
25
L
ASP
70
A
ASP
70
L
ILE
75
A
ILE
75
L
PHE
62
A
PHE
62
L
SER
67
A
SER
67
L
SER
10
A
SER
10
L
SER
14
A
SER
14
L
THR
102
A
THR
102
L
LYS
107
A
LYS
107
L
ALA
84
A
ALA
84
L
GLN
90
A
GLN
90
L
LEU
33
A
LEU
33
L
GLN
38
A
GLN
38
L
ILE
44
A
ILE
44
L
ILE
48
A
ILE
48
L
SER
114
A
SER
114
L
PHE
118
A
PHE
118
L
THR
129
A
THR
129
L
ASN
137
A
ASN
137
L
LEU
175
A
LEU
175
L
SER
182
A
SER
182
L
SER
159
A
SER
159
L
VAL
163
A
VAL
163
L
LYS
145
A
LYS
145
L
VAL
150
A
VAL
150
L
VAL
191
A
VAL
191
L
THR
197
A
THR
197
L
VAL
205
A
VAL
205
L
ASN
210
A
ASN
210
H
GLN
3
B
GLN
3
H
GLN
6
B
GLN
6
H
VAL
18
B
VAL
18
H
SER
25
B
SER
25
H
THR
77
B
THR
78
H
LEU
82
B
LEU
83
H
ALA
67
B
ALA
68
H
ASP
72
B
ASP
73
H
GLU
10
B
GLU
10
H
VAL
12
B
VAL
12
H
THR
107
B
THR
108
H
VAL
111
B
VAL
112
H
ALA
91
B
ALA
92
H
ALA
96
B
ALA
97
H
MET
34
B
MET
34
H
GLN
39
B
GLN
39
H
LEU
45
B
LEU
45
H
ASP
52
B
ASP
52
H
ASN
56
B
ASN
57
H
TYR
59
B
TYR
60
H
SER
120
B
SER
121
H
LEU
124
B
LEU
125
H
THR
135
B
THR
136
H
TYR
145
B
TYR
146
H
TYR
176
B
TYR
177
H
PRO
185
B
PRO
186
H
VAL
163
B
VAL
164
H
THR
165
B
THR
166
H
THR
151
B
THR
152
H
TRP
154
B
TRP
155
H
ILE
195
B
ILE
196
H
HIS
200
B
HIS
201
H
THR
205
B
THR
206
H
LYS
210
B
LYS
211
BINDING SITE FOR RESIDUE NPE H 217
H
NPE
217
Software
14
H
TYR
33
B
TYR
33
14
1_555
H
HIS
35
B
HIS
35
14
1_555
H
TRP
47
B
TRP
47
14
1_555
H
ALA
96
B
ALA
97
14
1_555
H
TYR
98
B
TYR
99
14
1_555
H
TYR
99
B
TYR
100
14
1_555
H
GLY
100
B
GLY
101
14
1_555
H
TRP
103
B
TRP
104
14
1_555
L
LEU
89
A
LEU
89
14
1_555
L
TYR
94
A
TYR
94
14
1_555
L
ARG
96
A
ARG
96
14
1_555
L
PHE
98
A
PHE
98
14
1_555
L
ARG
211
A
ARG
211
14
1_556
L
GLU
213
A
GLU
213
14
1_556
4
P 1 21 1