0.018709
0.010802
0.000000
0.000000
0.021603
0.000000
0.000000
0.000000
0.037369
0.00000
0.00000
0.00000
Fass, D.
Blacklow, S.C.
Kim, P.S.
Berger, J.M.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
9
90.00
90.00
120.00
53.450
53.450
26.760
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
Ca 2
40.078
CALCIUM ION
non-polymer
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
O4 S -2
96.063
SULFATE ION
non-polymer
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
UK
Nature
NATUAS
0006
0028-0836
388
691
693
10.1038/41798
9262405
Molecular basis of familial hypercholesterolaemia from structure of LDL receptor module.
1997
US
Nat.Struct.Biol.
NSBIEW
2024
1072-8368
3
758
Protein Folding and Calcium Binding Defects Arising from Familial Hypercholesterolemia Mutations of the Ldl Receptor
1996
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
93
1
MIRRORS
IMAGE PLATE
1996-11
RIGAKU
NI FILTER
M
x-ray
1
1.5418
1.0
1.5418
ROTATING ANODE
RIGAKU RUH2R
4069.431
LOW-DENSITY LIPOPROTEIN RECEPTOR
LIGAND-BINDING DOMAIN, FIFTH REPEAT
1
man
polymer
96.063
SULFATE ION
1
syn
non-polymer
40.078
CALCIUM ION
1
syn
non-polymer
18.015
water
30
nat
water
LR5
no
no
PCSAFEFHCLSGECIHSSWRCDGGPDCKDKSDEENCA
PCSAFEFHCLSGECIHSSWRCDGGPDCKDKSDEENCA
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
human
Homo
Escherichia
Escherichia coli
sample
9606
Homo sapiens
511693
Escherichia coli BL21
BL21
PMM-LR5
1
1.81
28.
5.0
PROTEIN WAS CRYSTALLIZED FROM 2.1 M AMMONIUM SULFATE, PH 5.0, 25% SUCROSE
repository
Initial release
Version format compliance
Version format compliance
1
0
1997-07-07
1
1
2008-03-24
1
2
2011-07-13
Y
BNL
1997-05-04
REL
SO4
SULFATE ION
CA
CALCIUM ION
HOH
water
SO4
72
2
SO4
SO4
72
A
CA
73
3
CA
CA
73
A
HOH
42
4
HOH
HOH
42
A
HOH
43
4
HOH
HOH
43
A
HOH
44
4
HOH
HOH
44
A
HOH
45
4
HOH
HOH
45
A
HOH
46
4
HOH
HOH
46
A
HOH
47
4
HOH
HOH
47
A
HOH
48
4
HOH
HOH
48
A
HOH
49
4
HOH
HOH
49
A
HOH
50
4
HOH
HOH
50
A
HOH
51
4
HOH
HOH
51
A
HOH
52
4
HOH
HOH
52
A
HOH
53
4
HOH
HOH
53
A
HOH
54
4
HOH
HOH
54
A
HOH
55
4
HOH
HOH
55
A
HOH
56
4
HOH
HOH
56
A
HOH
57
4
HOH
HOH
57
A
HOH
58
4
HOH
HOH
58
A
HOH
59
4
HOH
HOH
59
A
HOH
60
4
HOH
HOH
60
A
HOH
61
4
HOH
HOH
61
A
HOH
62
4
HOH
HOH
62
A
HOH
63
4
HOH
HOH
63
A
HOH
64
4
HOH
HOH
64
A
HOH
65
4
HOH
HOH
65
A
HOH
66
4
HOH
HOH
66
A
HOH
67
4
HOH
HOH
67
A
HOH
68
4
HOH
HOH
68
A
HOH
69
4
HOH
HOH
69
A
HOH
70
4
HOH
HOH
70
A
HOH
71
4
HOH
HOH
71
A
PRO
4
n
1
PRO
4
A
CYS
5
n
2
CYS
5
A
SER
6
n
3
SER
6
A
ALA
7
n
4
ALA
7
A
PHE
8
n
5
PHE
8
A
GLU
9
n
6
GLU
9
A
PHE
10
n
7
PHE
10
A
HIS
11
n
8
HIS
11
A
CYS
12
n
9
CYS
12
A
LEU
13
n
10
LEU
13
A
SER
14
n
11
SER
14
A
GLY
15
n
12
GLY
15
A
GLU
16
n
13
GLU
16
A
CYS
17
n
14
CYS
17
A
ILE
18
n
15
ILE
18
A
HIS
19
n
16
HIS
19
A
SER
20
n
17
SER
20
A
SER
21
n
18
SER
21
A
TRP
22
n
19
TRP
22
A
ARG
23
n
20
ARG
23
A
CYS
24
n
21
CYS
24
A
ASP
25
n
22
ASP
25
A
GLY
26
n
23
GLY
26
A
GLY
27
n
24
GLY
27
A
PRO
28
n
25
PRO
28
A
ASP
29
n
26
ASP
29
A
CYS
30
n
27
CYS
30
A
LYS
31
n
28
LYS
31
A
ASP
32
n
29
ASP
32
A
LYS
33
n
30
LYS
33
A
SER
34
n
31
SER
34
A
ASP
35
n
32
ASP
35
A
GLU
36
n
33
GLU
36
A
GLU
37
n
34
GLU
37
A
ASN
38
n
35
ASN
38
A
CYS
39
n
36
CYS
39
A
ALA
40
n
37
ALA
40
A
author_defined_assembly
1
monomeric
A
TRP
22
A
O
TRP
19
1_555
A
CA
73
C
CA
CA
1_555
A
GLY
27
A
O
GLY
24
1_555
170.3
A
TRP
22
A
O
TRP
19
1_555
A
CA
73
C
CA
CA
1_555
A
ASP
35
A
OD2
ASP
32
1_555
98.2
A
GLY
27
A
O
GLY
24
1_555
A
CA
73
C
CA
CA
1_555
A
ASP
35
A
OD2
ASP
32
1_555
91.3
A
TRP
22
A
O
TRP
19
1_555
A
CA
73
C
CA
CA
1_555
A
ASP
25
A
OD1
ASP
22
1_555
89.7
A
GLY
27
A
O
GLY
24
1_555
A
CA
73
C
CA
CA
1_555
A
ASP
25
A
OD1
ASP
22
1_555
80.6
A
ASP
35
A
OD2
ASP
32
1_555
A
CA
73
C
CA
CA
1_555
A
ASP
25
A
OD1
ASP
22
1_555
168.6
A
TRP
22
A
O
TRP
19
1_555
A
CA
73
C
CA
CA
1_555
A
ASP
29
A
OD2
ASP
26
1_555
94.9
A
GLY
27
A
O
GLY
24
1_555
A
CA
73
C
CA
CA
1_555
A
ASP
29
A
OD2
ASP
26
1_555
87.2
A
ASP
35
A
OD2
ASP
32
1_555
A
CA
73
C
CA
CA
1_555
A
ASP
29
A
OD2
ASP
26
1_555
87.6
A
ASP
25
A
OD1
ASP
22
1_555
A
CA
73
C
CA
CA
1_555
A
ASP
29
A
OD2
ASP
26
1_555
100.1
A
TRP
22
A
O
TRP
19
1_555
A
CA
73
C
CA
CA
1_555
A
GLU
36
A
OE2
GLU
33
1_555
88.9
A
GLY
27
A
O
GLY
24
1_555
A
CA
73
C
CA
CA
1_555
A
GLU
36
A
OE2
GLU
33
1_555
88.7
A
ASP
35
A
OD2
ASP
32
1_555
A
CA
73
C
CA
CA
1_555
A
GLU
36
A
OE2
GLU
33
1_555
93.7
A
ASP
25
A
OD1
ASP
22
1_555
A
CA
73
C
CA
CA
1_555
A
GLU
36
A
OE2
GLU
33
1_555
78.1
A
ASP
29
A
OD2
ASP
26
1_555
A
CA
73
C
CA
CA
1_555
A
GLU
36
A
OE2
GLU
33
1_555
175.8
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
O
PHE
10
A
O
PHE
7
A
N
ILE
18
A
N
ILE
15
1
5.47
0.80
106.30
111.77
A
A
A
CD1
CG
CD2
TRP
TRP
TRP
22
22
22
N
1
A
A
C
O
ALA
ALA
40
40
-0.311
0.019
1.229
0.918
N
1
A
A
O
O
HOH
HOH
49
69
2.17
1_555
9_554
1
A
PHE
8
78.12
-21.18
0.24
0.209
0.209
1.7
15.0
227
2959
7.7
94.3
RANDOM
1
THROUGHOUT
MIR
1.7
15.0
30
315
6
0
279
0.013
2.498
1.7
15.0
1AJJ
2959
1.5
0.054
1
20.
4.5
94.3
1.70
1.76
7.
0.169
3.
87.7
data reduction
DENZO
data scaling
SCALEPACK
model building
X-PLOR
3.851
refinement
X-PLOR
3.851
phasing
X-PLOR
3.851
LOW-DENSITY LIPOPROTEIN RECEPTOR
LDL RECEPTOR LIGAND-BINDING MODULE 5, CALCIUM-COORDINATING
1
N
N
2
N
N
3
N
N
4
N
N
A
SER
20
A
SER
17
HELX_P
A
TRP
22
A
TRP
19
5
1
3
A
SER
34
A
SER
31
HELX_P
A
GLU
36
A
GLU
33
5
2
3
disulf
1.997
A
CYS
5
A
SG
CYS
2
1_555
A
CYS
17
A
SG
CYS
14
1_555
disulf
1.974
A
CYS
12
A
SG
CYS
9
1_555
A
CYS
30
A
SG
CYS
27
1_555
disulf
1.987
A
CYS
24
A
SG
CYS
21
1_555
A
CYS
39
A
SG
CYS
36
1_555
metalc
2.289
A
CA
73
C
CA
CA
1_555
A
TRP
22
A
O
TRP
19
1_555
metalc
2.317
A
CA
73
C
CA
CA
1_555
A
GLY
27
A
O
GLY
24
1_555
metalc
2.431
A
CA
73
C
CA
CA
1_555
A
ASP
35
A
OD2
ASP
32
1_555
metalc
2.440
A
CA
73
C
CA
CA
1_555
A
ASP
25
A
OD1
ASP
22
1_555
metalc
2.475
A
CA
73
C
CA
CA
1_555
A
ASP
29
A
OD2
ASP
26
1_555
metalc
2.501
A
CA
73
C
CA
CA
1_555
A
GLU
36
A
OE2
GLU
33
1_555
RECEPTOR
RECEPTOR, LDL RECEPTOR, CYSTEINE-RICH MODULE, CALCIUM
LDLR_HUMAN
UNP
1
1
P01130
MGPWGWKLRWTVALLLAAAGTAVGDRCERNEFQCQDGKCISYKWVCDGSAECQDGSDESQETCLSVTCKSGDFSCGGRVN
RCIPQFWRCDGQVDCDNGSDEQGCPPKTCSQDEFRCHDGKCISRQFVCDSDRDCLDGSDEASCPVLTCGPASFQCNSSTC
IPQLWACDNDPDCEDGSDEWPQRCRGLYVFQGDSSPCSAFEFHCLSGECIHSSWRCDGGPDCKDKSDEENCAVATCRPDE
FQCSDGNCIHGSRQCDREYDCKDMSDEVGCVNVTLCEGPNKFKCHSGECITLDKVCNMARDCRDWSDEPIKECGTNECLD
NNGGCSHVCNDLKIGYECLCPDGFQLVAQRRCEDIDECQDPDTCSQLCVNLEGGYKCQCEEGFQLDPHTKACKAVGSIAY
LFFTNRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLA
VDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENI
QWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVN
LLAENLLSPEDMVLFHNLTQPRGVNWCERTTLSNGGCQYLCLPAPQINPHSPKFTCACPDGMLLARDMRSCLTEAEAAVA
TQETSTVRLKVSSTAVRTQHTTTRPVPDTSRLPGATPGLTTVEIVTMSHQALGDVAGRGNEKKPSSVRALSIVLPIVLLV
FLCLGVFLLWKNWRLKNINSINFDNPVYQKTTEDEVHICHNQDGYSYPSRQMVSLEDDVA
196
232
1AJJ
4
40
P01130
A
1
1
37
2
anti-parallel
A
PHE
10
A
PHE
7
A
HIS
11
A
HIS
8
A
CYS
17
A
CYS
14
A
ILE
18
A
ILE
15
BINDING SITE FOR RESIDUE SO4 A 72
Software
6
BINDING SITE FOR RESIDUE CA A 73
Software
6
A
GLU
9
A
GLU
6
6
1_555
A
HIS
19
A
HIS
16
6
1_555
A
SER
20
A
SER
17
6
1_555
A
HOH
43
D
HOH
6
5_555
A
HOH
47
D
HOH
6
5_555
A
HOH
70
D
HOH
6
1_555
A
TRP
22
A
TRP
19
6
1_555
A
ASP
25
A
ASP
22
6
1_555
A
GLY
27
A
GLY
24
6
1_555
A
ASP
29
A
ASP
26
6
1_555
A
ASP
35
A
ASP
32
6
1_555
A
GLU
36
A
GLU
33
6
1_555
146
H 3