1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 Luebke, K.J. Landry, S.M. Tinoco Junior, I. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 1 90.00 90.00 90.00 1.000 1.000 1.000 C10 H14 N5 O7 P 347.221 y ADENOSINE-5'-MONOPHOSPHATE RNA linking C9 H14 N3 O8 P 323.197 y CYTIDINE-5'-MONOPHOSPHATE RNA linking C10 H14 N5 O8 P 363.221 y GUANOSINE-5'-MONOPHOSPHATE RNA linking C9 H13 N2 O9 P 324.181 y URIDINE-5'-MONOPHOSPHATE RNA linking Berkeley : University of California, Berkeley (Thesis) US Biochemistry BICHAW 0033 0006-2960 36 10246 10255 10.1021/bi9701540 9254623 Solution conformation of a five-nucleotide RNA bulge loop from a group I intron. 1997 10.2210/pdb1ajt/pdb pdb_00001ajt 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 3836.344 RNA (5'-R(*GP*GP*UP*AP*AP*UP*AP*AP*GP*CP*UP*C)-3') 1 syn polymer 2220.395 RNA (5'-R(*GP*AP*GP*UP*AP*CP*C)-3') 1 syn polymer no no GGUAAUAAGCUC GGUAAUAAGCUC A polyribonucleotide no no GAGUACC GAGUACC B polyribonucleotide n n n n n n n n n n n n n n n n n n n 25.736 1 19 A 2 B 24 8.013 A_G2:C24_B 1 -22.649 -0.578 -0.097 -0.463 -2.209 1 19 A 3 B 23 6.016 A_G3:C23_B 2 -26.603 -0.635 -0.635 -0.505 5.285 A 4 B 22 0.263 A_U4:A22_B 3 -16.998 4.459 0.025 -0.995 36.199 1 28 A 10 B 21 6.087 A_G10:U21_B 4 8.297 -2.407 -0.449 -0.426 42.663 1 19 A 11 B 20 -4.727 A_C11:G20_B 5 -23.155 0.234 -0.536 -0.172 20.394 1 20 A 12 B 19 -9.375 A_U12:A19_B 6 -10.528 -0.021 -0.443 -0.049 22.605 1 19 A 13 B 18 -2.922 A_C13:G18_B 7 -20.115 0.513 -0.444 -0.329 3.273 45.877 A A 2 3 44.409 B B 24 23 4.107 31.653 -1.329 0.310 AA_G2G3:C23C24_BB 1 -0.569 0.799 33.639 -3.241 1.640 2.915 54.172 A A 3 4 8.337 B B 23 22 2.964 7.569 0.991 0.072 AA_G3U4:A22C23_BB 2 -1.913 2.107 53.649 -0.341 -1.194 2.897 43.472 A A 10 11 26.279 B B 21 20 3.420 18.861 -1.877 -0.204 AA_G10C11:G20U21_BB 3 2.859 -3.983 39.247 -2.140 2.817 2.364 42.256 A A 11 12 40.925 B B 20 19 3.920 27.311 -1.243 -1.138 AA_C11U12:A19G20_BB 4 -1.175 1.760 32.535 -4.663 1.591 2.792 40.954 A A 12 13 18.948 B B 19 18 3.046 13.027 1.414 -0.722 AA_U12C13:G18A19_BB 5 3.790 -5.513 38.733 -2.342 -1.639 database_2 pdbx_database_status pdbx_struct_assembly pdbx_struct_oper_list repository Initial release Version format compliance Version format compliance Database references Derived calculations Other 1 0 1997-08-20 1 1 2008-03-24 1 2 2011-07-13 1 3 2022-02-16 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_database_status.process_site 1 STRUCTURE Y BNL 1997-05-08 REL REL LEAST RESTRAINT VIOLATION 20 1 NOESY DQF-COSY HMQC TOCSY TOCSY-NOESY H-P CORRELATED 6.7 298 K RESTRAINED MOLECULAR DYNAMICS BRUNGER refinement X-PLOR 2.2 structure solution FELIX230 structure solution X-PLOR2.2 300 Bruker AMX300 500 Bruker AMX600 500 GE GN500 G 2 n 1 G 2 A G 3 n 2 G 3 A U 4 n 3 U 4 A A 5 n 4 A 5 A A 6 n 5 A 6 A U 7 n 6 U 7 A A 8 n 7 A 8 A A 9 n 8 A 9 A G 10 n 9 G 10 A C 11 n 10 C 11 A U 12 n 11 U 12 A C 13 n 12 C 13 A G 18 n 1 G 18 B A 19 n 2 A 19 B G 20 n 3 G 20 B U 21 n 4 U 21 B A 22 n 5 A 22 B C 23 n 6 C 23 B C 24 n 7 C 24 B author_defined_assembly 2 dimeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 1 A B O2 H61 U A 4 22 1.54 1 A A HO2' OP2 A G 9 10 1.56 1 A B H41 O6 C G 11 20 1.59 model building X-PLOR refinement X-PLOR phasing X-PLOR FIVE-NUCLEOTIDE BULGE LOOP FROM TETRAHYMENA THERMOPHILA GROUP I INTRON, NMR, 1 STRUCTURE 1 N N 2 N N hydrog WATSON-CRICK A G 2 A N1 G 1 1_555 B C 24 B N3 C 7 1_555 hydrog WATSON-CRICK A G 2 A N2 G 1 1_555 B C 24 B O2 C 7 1_555 hydrog WATSON-CRICK A G 2 A O6 G 1 1_555 B C 24 B N4 C 7 1_555 hydrog WATSON-CRICK A G 3 A N1 G 2 1_555 B C 23 B N3 C 6 1_555 hydrog WATSON-CRICK A G 3 A N2 G 2 1_555 B C 23 B O2 C 6 1_555 hydrog WATSON-CRICK A G 3 A O6 G 2 1_555 B C 23 B N4 C 6 1_555 hydrog U-A PAIR A U 4 A O2 U 3 1_555 B A 22 B N6 A 5 1_555 hydrog TYPE_28_PAIR A G 10 A N1 G 9 1_555 B U 21 B O2 U 4 1_555 hydrog TYPE_28_PAIR A G 10 A O6 G 9 1_555 B U 21 B N3 U 4 1_555 hydrog WATSON-CRICK A C 11 A N3 C 10 1_555 B G 20 B N1 G 3 1_555 hydrog WATSON-CRICK A C 11 A N4 C 10 1_555 B G 20 B O6 G 3 1_555 hydrog WATSON-CRICK A C 11 A O2 C 10 1_555 B G 20 B N2 G 3 1_555 hydrog WATSON-CRICK A U 12 A N3 U 11 1_555 B A 19 B N1 A 2 1_555 hydrog WATSON-CRICK A U 12 A O4 U 11 1_555 B A 19 B N6 A 2 1_555 hydrog WATSON-CRICK A C 13 A N3 C 12 1_555 B G 18 B N1 G 1 1_555 hydrog WATSON-CRICK A C 13 A N4 C 12 1_555 B G 18 B O6 G 1 1_555 hydrog WATSON-CRICK A C 13 A O2 C 12 1_555 B G 18 B N2 G 1 1_555 RNA RNA BULGE LOOP, GROUP I INTRON, RIBONUCLEIC ACID, RNA 1AJT PDB 1 1AJT 1AJT PDB 2 1AJT 2 13 1AJT 2 13 1AJT A 1 1 12 18 24 1AJT 18 24 1AJT B 2 1 7 1 P 1