1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Walters, K.J.
Dayie, K.T.
Reece, R.J.
Ptashne, M.
Wagner, G.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
1
90.00
90.00
90.00
1.000
1.000
1.000
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
Zn 2
65.409
ZINC ION
non-polymer
US
Nat.Struct.Biol.
NSBIEW
2024
1072-8368
4
744
750
10.1038/nsb0997-744
9303003
Structure and mobility of the PUT3 dimer.
1997
10.2210/pdb1ajy/pdb
pdb_00001ajy
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
8094.525
PUT3
DNA-BINDING DOMAIN, RESIDUES 31 - 100
2
nat
polymer
65.409
ZINC ION
4
syn
non-polymer
no
no
MSVACLSCRKRHIKCPGGNPCQKCVTSNAICEYLEPSKKIVVSTKYLQQLQKDLNDKTEENNRLKALLLER
MSVACLSCRKRHIKCPGGNPCQKCVTSNAICEYLEPSKKIVVSTKYLQQLQKDLNDKTEENNRLKALLLER
A,B
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
baker's yeast
EXPRESSED IN ESCHERICHIA COLI
Saccharomyces
sample
4932
Saccharomyces cerevisiae
database_2
pdbx_database_status
pdbx_struct_assembly
pdbx_struct_conn_angle
pdbx_struct_oper_list
struct_conn
struct_site
repository
Initial release
Version format compliance
Version format compliance
Database references
Derived calculations
Other
1
0
1997-09-17
1
1
2008-03-24
1
2
2011-07-13
1
3
2022-02-16
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_database_status.process_site
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr1_label_seq_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_label_seq_id
_pdbx_struct_conn_angle.value
_struct_conn.pdbx_dist_value
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
Y
BNL
1997-05-12
REL
REL
ZN
ZINC ION
NO VIOLATION ABOVE 0.5 ANGSTROMS AND 5 DEGREE DIHEDRAL ANGLE
50
13
NOESY (1H
13C
15N)
TOCSY
HNHA
HNHB
P.COSY
6.5
303
K
PROGRAMS WRITTEN BY MICHAEL NILGES FOR SYMMETRIC DIMERS WERE USED (NILGES, M. PROTEINS 17, 297-309 (1993)). STRUCTURES WERE STARTED FROM AN EXTENDED MONOMER CONFORMATION AND RANDOM ROTATIONS WERE MADE AROUND THE PHI-PSI ANGLES. THE MONOMER WAS THEN DUPLICATED AND MOLECULAR DYNAMICS WAS PERFORMED USING NMR DISTANCE RESTRAINTS AND GENERATED SYMMETRY DISTANCE RESTRAINTS. RMSD CALCULATED BY SUPERIMPOSING STRUCTURES ON LOWEST ENERGY STRUCTURE FOR RESIDUES 33-62 OF EACH MONOMER AND 68-98 OF EACH DIMER. RMSD (ANGSTROMS): ATOMS FOR RESIDUES 33-62: 0.55 ATOMS FOR RESIDUES 33-62: 1.1 BACKBONE ATOMS FOR RESIDUES 68-98: 0.7 HEAVY ATOMS FOR RESIDUES 68-98: 1.5
molecular dynamics
BRUNGER
refinement
X-PLOR
3.851
structure solution
X-PLOR
3.851
750
Varian
UP750
600
Bruker
AMX600
ZN
101
2
ZN
ZN
101
A
ZN
102
2
ZN
ZN
102
A
ZN
101
2
ZN
ZN
101
B
ZN
102
2
ZN
ZN
102
B
MET
30
n
1
MET
30
A
SER
31
n
2
SER
31
A
VAL
32
n
3
VAL
32
A
ALA
33
n
4
ALA
33
A
CYS
34
n
5
CYS
34
A
LEU
35
n
6
LEU
35
A
SER
36
n
7
SER
36
A
CYS
37
n
8
CYS
37
A
ARG
38
n
9
ARG
38
A
LYS
39
n
10
LYS
39
A
ARG
40
n
11
ARG
40
A
HIS
41
n
12
HIS
41
A
ILE
42
n
13
ILE
42
A
LYS
43
n
14
LYS
43
A
CYS
44
n
15
CYS
44
A
PRO
45
n
16
PRO
45
A
GLY
46
n
17
GLY
46
A
GLY
47
n
18
GLY
47
A
ASN
48
n
19
ASN
48
A
PRO
49
n
20
PRO
49
A
CYS
50
n
21
CYS
50
A
GLN
51
n
22
GLN
51
A
LYS
52
n
23
LYS
52
A
CYS
53
n
24
CYS
53
A
VAL
54
n
25
VAL
54
A
THR
55
n
26
THR
55
A
SER
56
n
27
SER
56
A
ASN
57
n
28
ASN
57
A
ALA
58
n
29
ALA
58
A
ILE
59
n
30
ILE
59
A
CYS
60
n
31
CYS
60
A
GLU
61
n
32
GLU
61
A
TYR
62
n
33
TYR
62
A
LEU
63
n
34
LEU
63
A
GLU
64
n
35
GLU
64
A
PRO
65
n
36
PRO
65
A
SER
66
n
37
SER
66
A
LYS
67
n
38
LYS
67
A
LYS
68
n
39
LYS
68
A
ILE
69
n
40
ILE
69
A
VAL
70
n
41
VAL
70
A
VAL
71
n
42
VAL
71
A
SER
72
n
43
SER
72
A
THR
73
n
44
THR
73
A
LYS
74
n
45
LYS
74
A
TYR
75
n
46
TYR
75
A
LEU
76
n
47
LEU
76
A
GLN
77
n
48
GLN
77
A
GLN
78
n
49
GLN
78
A
LEU
79
n
50
LEU
79
A
GLN
80
n
51
GLN
80
A
LYS
81
n
52
LYS
81
A
ASP
82
n
53
ASP
82
A
LEU
83
n
54
LEU
83
A
ASN
84
n
55
ASN
84
A
ASP
85
n
56
ASP
85
A
LYS
86
n
57
LYS
86
A
THR
87
n
58
THR
87
A
GLU
88
n
59
GLU
88
A
GLU
89
n
60
GLU
89
A
ASN
90
n
61
ASN
90
A
ASN
91
n
62
ASN
91
A
ARG
92
n
63
ARG
92
A
LEU
93
n
64
LEU
93
A
LYS
94
n
65
LYS
94
A
ALA
95
n
66
ALA
95
A
LEU
96
n
67
LEU
96
A
LEU
97
n
68
LEU
97
A
LEU
98
n
69
LEU
98
A
GLU
99
n
70
GLU
99
A
ARG
100
n
71
ARG
100
A
MET
30
n
1
MET
30
B
SER
31
n
2
SER
31
B
VAL
32
n
3
VAL
32
B
ALA
33
n
4
ALA
33
B
CYS
34
n
5
CYS
34
B
LEU
35
n
6
LEU
35
B
SER
36
n
7
SER
36
B
CYS
37
n
8
CYS
37
B
ARG
38
n
9
ARG
38
B
LYS
39
n
10
LYS
39
B
ARG
40
n
11
ARG
40
B
HIS
41
n
12
HIS
41
B
ILE
42
n
13
ILE
42
B
LYS
43
n
14
LYS
43
B
CYS
44
n
15
CYS
44
B
PRO
45
n
16
PRO
45
B
GLY
46
n
17
GLY
46
B
GLY
47
n
18
GLY
47
B
ASN
48
n
19
ASN
48
B
PRO
49
n
20
PRO
49
B
CYS
50
n
21
CYS
50
B
GLN
51
n
22
GLN
51
B
LYS
52
n
23
LYS
52
B
CYS
53
n
24
CYS
53
B
VAL
54
n
25
VAL
54
B
THR
55
n
26
THR
55
B
SER
56
n
27
SER
56
B
ASN
57
n
28
ASN
57
B
ALA
58
n
29
ALA
58
B
ILE
59
n
30
ILE
59
B
CYS
60
n
31
CYS
60
B
GLU
61
n
32
GLU
61
B
TYR
62
n
33
TYR
62
B
LEU
63
n
34
LEU
63
B
GLU
64
n
35
GLU
64
B
PRO
65
n
36
PRO
65
B
SER
66
n
37
SER
66
B
LYS
67
n
38
LYS
67
B
LYS
68
n
39
LYS
68
B
ILE
69
n
40
ILE
69
B
VAL
70
n
41
VAL
70
B
VAL
71
n
42
VAL
71
B
SER
72
n
43
SER
72
B
THR
73
n
44
THR
73
B
LYS
74
n
45
LYS
74
B
TYR
75
n
46
TYR
75
B
LEU
76
n
47
LEU
76
B
GLN
77
n
48
GLN
77
B
GLN
78
n
49
GLN
78
B
LEU
79
n
50
LEU
79
B
GLN
80
n
51
GLN
80
B
LYS
81
n
52
LYS
81
B
ASP
82
n
53
ASP
82
B
LEU
83
n
54
LEU
83
B
ASN
84
n
55
ASN
84
B
ASP
85
n
56
ASP
85
B
LYS
86
n
57
LYS
86
B
THR
87
n
58
THR
87
B
GLU
88
n
59
GLU
88
B
GLU
89
n
60
GLU
89
B
ASN
90
n
61
ASN
90
B
ASN
91
n
62
ASN
91
B
ARG
92
n
63
ARG
92
B
LEU
93
n
64
LEU
93
B
LYS
94
n
65
LYS
94
B
ALA
95
n
66
ALA
95
B
LEU
96
n
67
LEU
96
B
LEU
97
n
68
LEU
97
B
LEU
98
n
69
LEU
98
B
GLU
99
n
70
GLU
99
B
ARG
100
n
71
ARG
100
B
author_defined_assembly
2
dimeric
A
CYS
34
A
SG
CYS
5
1_555
A
ZN
101
C
ZN
ZN
1_555
A
CYS
37
A
SG
CYS
8
1_555
110.0
A
CYS
34
A
SG
CYS
5
1_555
A
ZN
101
C
ZN
ZN
1_555
A
CYS
44
A
SG
CYS
15
1_555
94.8
A
CYS
37
A
SG
CYS
8
1_555
A
ZN
101
C
ZN
ZN
1_555
A
CYS
44
A
SG
CYS
15
1_555
123.9
A
CYS
34
A
SG
CYS
5
1_555
A
ZN
101
C
ZN
ZN
1_555
A
CYS
50
A
SG
CYS
21
1_555
74.6
A
CYS
37
A
SG
CYS
8
1_555
A
ZN
101
C
ZN
ZN
1_555
A
CYS
50
A
SG
CYS
21
1_555
127.1
A
CYS
44
A
SG
CYS
15
1_555
A
ZN
101
C
ZN
ZN
1_555
A
CYS
50
A
SG
CYS
21
1_555
107.4
A
CYS
34
A
SG
CYS
5
1_555
A
ZN
102
D
ZN
ZN
1_555
A
CYS
50
A
SG
CYS
21
1_555
81.3
A
CYS
34
A
SG
CYS
5
1_555
A
ZN
102
D
ZN
ZN
1_555
A
CYS
53
A
SG
CYS
24
1_555
132.6
A
CYS
50
A
SG
CYS
21
1_555
A
ZN
102
D
ZN
ZN
1_555
A
CYS
53
A
SG
CYS
24
1_555
98.1
A
CYS
34
A
SG
CYS
5
1_555
A
ZN
102
D
ZN
ZN
1_555
A
CYS
60
A
SG
CYS
31
1_555
122.2
A
CYS
50
A
SG
CYS
21
1_555
A
ZN
102
D
ZN
ZN
1_555
A
CYS
60
A
SG
CYS
31
1_555
75.3
A
CYS
53
A
SG
CYS
24
1_555
A
ZN
102
D
ZN
ZN
1_555
A
CYS
60
A
SG
CYS
31
1_555
102.9
B
CYS
34
B
SG
CYS
5
1_555
B
ZN
101
E
ZN
ZN
1_555
B
CYS
37
B
SG
CYS
8
1_555
107.0
B
CYS
34
B
SG
CYS
5
1_555
B
ZN
101
E
ZN
ZN
1_555
B
CYS
44
B
SG
CYS
15
1_555
106.8
B
CYS
37
B
SG
CYS
8
1_555
B
ZN
101
E
ZN
ZN
1_555
B
CYS
44
B
SG
CYS
15
1_555
128.7
B
CYS
34
B
SG
CYS
5
1_555
B
ZN
101
E
ZN
ZN
1_555
B
CYS
50
B
SG
CYS
21
1_555
75.6
B
CYS
37
B
SG
CYS
8
1_555
B
ZN
101
E
ZN
ZN
1_555
B
CYS
50
B
SG
CYS
21
1_555
120.3
B
CYS
44
B
SG
CYS
15
1_555
B
ZN
101
E
ZN
ZN
1_555
B
CYS
50
B
SG
CYS
21
1_555
104.8
B
CYS
34
B
SG
CYS
5
1_555
B
ZN
102
F
ZN
ZN
1_555
B
CYS
50
B
SG
CYS
21
1_555
82.6
B
CYS
34
B
SG
CYS
5
1_555
B
ZN
102
F
ZN
ZN
1_555
B
CYS
53
B
SG
CYS
24
1_555
131.8
B
CYS
50
B
SG
CYS
21
1_555
B
ZN
102
F
ZN
ZN
1_555
B
CYS
53
B
SG
CYS
24
1_555
103.7
B
CYS
34
B
SG
CYS
5
1_555
B
ZN
102
F
ZN
ZN
1_555
B
CYS
60
B
SG
CYS
31
1_555
126.8
B
CYS
50
B
SG
CYS
21
1_555
B
ZN
102
F
ZN
ZN
1_555
B
CYS
60
B
SG
CYS
31
1_555
72.5
B
CYS
53
B
SG
CYS
24
1_555
B
ZN
102
F
ZN
ZN
1_555
B
CYS
60
B
SG
CYS
31
1_555
100.0
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
3
A
A
O
HH
GLY
TYR
47
62
1.56
3
B
B
O
H
CYS
ILE
37
42
1.59
10
B
B
O
H
CYS
ILE
37
42
1.59
11
B
B
O
HD21
THR
ASN
87
91
1.60
11
A
A
O
HD21
THR
ASN
87
91
1.60
12
B
B
O
H
CYS
ILE
37
42
1.59
1
A
ARG
38
0.260
SIDE CHAIN
1
A
ARG
40
0.291
SIDE CHAIN
1
A
ARG
92
0.225
SIDE CHAIN
1
A
ARG
100
0.318
SIDE CHAIN
1
B
ARG
38
0.315
SIDE CHAIN
1
B
ARG
40
0.295
SIDE CHAIN
1
B
ARG
92
0.224
SIDE CHAIN
1
B
ARG
100
0.317
SIDE CHAIN
2
A
ARG
38
0.308
SIDE CHAIN
2
A
ARG
40
0.316
SIDE CHAIN
2
A
ARG
92
0.250
SIDE CHAIN
2
A
ARG
100
0.246
SIDE CHAIN
2
B
ARG
38
0.280
SIDE CHAIN
2
B
ARG
40
0.146
SIDE CHAIN
2
B
ARG
92
0.249
SIDE CHAIN
2
B
ARG
100
0.246
SIDE CHAIN
3
A
ARG
38
0.290
SIDE CHAIN
3
A
ARG
40
0.267
SIDE CHAIN
3
A
ARG
92
0.297
SIDE CHAIN
3
A
ARG
100
0.293
SIDE CHAIN
3
B
ARG
38
0.302
SIDE CHAIN
3
B
ARG
40
0.301
SIDE CHAIN
3
B
ARG
92
0.297
SIDE CHAIN
3
B
ARG
100
0.293
SIDE CHAIN
4
A
ARG
38
0.165
SIDE CHAIN
4
A
ARG
40
0.270
SIDE CHAIN
4
A
ARG
92
0.318
SIDE CHAIN
4
A
ARG
100
0.305
SIDE CHAIN
4
B
ARG
38
0.312
SIDE CHAIN
4
B
ARG
40
0.302
SIDE CHAIN
4
B
ARG
92
0.317
SIDE CHAIN
4
B
ARG
100
0.305
SIDE CHAIN
5
A
ARG
38
0.258
SIDE CHAIN
5
A
ARG
40
0.315
SIDE CHAIN
5
A
ARG
92
0.267
SIDE CHAIN
5
A
ARG
100
0.269
SIDE CHAIN
5
B
ARG
38
0.189
SIDE CHAIN
5
B
ARG
40
0.317
SIDE CHAIN
5
B
ARG
92
0.267
SIDE CHAIN
5
B
ARG
100
0.268
SIDE CHAIN
6
A
ARG
38
0.304
SIDE CHAIN
6
A
ARG
40
0.296
SIDE CHAIN
6
A
ARG
92
0.292
SIDE CHAIN
6
A
ARG
100
0.290
SIDE CHAIN
6
B
ARG
38
0.262
SIDE CHAIN
6
B
ARG
40
0.312
SIDE CHAIN
6
B
ARG
92
0.291
SIDE CHAIN
6
B
ARG
100
0.290
SIDE CHAIN
7
A
ARG
38
0.187
SIDE CHAIN
7
A
ARG
40
0.318
SIDE CHAIN
7
A
ARG
92
0.315
SIDE CHAIN
7
A
ARG
100
0.318
SIDE CHAIN
7
B
ARG
38
0.296
SIDE CHAIN
7
B
ARG
40
0.164
SIDE CHAIN
7
B
ARG
92
0.316
SIDE CHAIN
7
B
ARG
100
0.318
SIDE CHAIN
8
A
ARG
38
0.303
SIDE CHAIN
8
A
ARG
40
0.285
SIDE CHAIN
8
A
ARG
92
0.294
SIDE CHAIN
8
A
ARG
100
0.223
SIDE CHAIN
8
B
ARG
38
0.228
SIDE CHAIN
8
B
ARG
40
0.253
SIDE CHAIN
8
B
ARG
92
0.293
SIDE CHAIN
8
B
ARG
100
0.222
SIDE CHAIN
9
A
ARG
38
0.242
SIDE CHAIN
9
A
ARG
40
0.223
SIDE CHAIN
9
A
ARG
92
0.314
SIDE CHAIN
9
A
ARG
100
0.315
SIDE CHAIN
9
B
ARG
38
0.160
SIDE CHAIN
9
B
ARG
40
0.167
SIDE CHAIN
9
B
ARG
92
0.314
SIDE CHAIN
9
B
ARG
100
0.315
SIDE CHAIN
10
A
ARG
38
0.283
SIDE CHAIN
10
A
ARG
40
0.303
SIDE CHAIN
10
A
ARG
92
0.257
SIDE CHAIN
10
A
ARG
100
0.313
SIDE CHAIN
10
B
ARG
38
0.197
SIDE CHAIN
10
B
ARG
40
0.307
SIDE CHAIN
10
B
ARG
92
0.257
SIDE CHAIN
10
B
ARG
100
0.313
SIDE CHAIN
11
A
ARG
38
0.304
SIDE CHAIN
11
A
ARG
40
0.316
SIDE CHAIN
11
A
ARG
92
0.267
SIDE CHAIN
11
A
ARG
100
0.266
SIDE CHAIN
11
B
ARG
38
0.293
SIDE CHAIN
11
B
ARG
40
0.318
SIDE CHAIN
11
B
ARG
92
0.267
SIDE CHAIN
11
B
ARG
100
0.268
SIDE CHAIN
12
A
ARG
38
0.305
SIDE CHAIN
12
A
ARG
40
0.266
SIDE CHAIN
12
A
ARG
92
0.159
SIDE CHAIN
12
A
ARG
100
0.256
SIDE CHAIN
12
B
ARG
38
0.305
SIDE CHAIN
12
B
ARG
40
0.311
SIDE CHAIN
12
B
ARG
92
0.159
SIDE CHAIN
12
B
ARG
100
0.256
SIDE CHAIN
13
A
ARG
38
0.295
SIDE CHAIN
13
A
ARG
40
0.147
SIDE CHAIN
13
A
ARG
92
0.268
SIDE CHAIN
13
A
ARG
100
0.312
SIDE CHAIN
13
B
ARG
38
0.317
SIDE CHAIN
13
B
ARG
40
0.224
SIDE CHAIN
13
B
ARG
92
0.268
SIDE CHAIN
13
B
ARG
100
0.312
SIDE CHAIN
1
A
SER
31
-167.09
85.10
1
A
CYS
34
-68.50
-179.59
1
A
CYS
50
-90.31
-136.15
1
A
GLN
51
-136.94
-37.36
1
A
ASN
57
39.00
62.15
1
A
GLU
64
-157.52
61.48
1
A
PRO
65
-62.11
-163.53
1
A
LYS
67
59.33
-74.91
1
A
LYS
68
57.90
166.84
1
A
VAL
71
-164.02
-86.90
1
B
CYS
34
-64.63
-179.76
1
B
PRO
45
-62.47
-71.15
1
B
CYS
50
-65.07
-137.00
1
B
GLN
51
-140.60
-40.04
1
B
SER
56
-84.64
-84.62
1
B
ASN
57
172.91
39.24
1
B
SER
66
-98.06
53.65
1
B
LYS
67
-45.82
-79.40
1
B
LYS
68
55.80
169.71
1
B
VAL
71
-164.18
-87.06
2
A
CYS
50
-81.01
-139.01
2
A
GLN
51
-135.97
-39.51
2
A
SER
56
-83.69
-84.35
2
A
ASN
57
172.13
39.63
2
A
GLU
64
-154.70
68.64
2
A
SER
66
-95.26
-84.51
2
A
LYS
67
-65.07
80.64
2
A
LYS
68
-170.65
104.61
2
A
VAL
70
-166.83
107.60
2
A
VAL
71
-154.17
-114.36
2
B
SER
31
53.56
176.89
2
B
CYS
34
-64.26
-177.56
2
B
CYS
50
-86.61
-136.80
2
B
GLN
51
-138.60
-38.39
2
B
SER
56
-84.62
-84.24
2
B
ASN
57
173.12
39.92
2
B
TYR
62
-124.00
-67.84
2
B
LEU
63
-168.58
32.55
2
B
GLU
64
-170.18
84.34
2
B
PRO
65
-64.33
70.48
2
B
LYS
67
47.91
90.53
2
B
LYS
68
-170.86
107.10
2
B
VAL
70
-166.78
107.89
2
B
VAL
71
-154.38
-114.38
3
A
SER
31
-172.01
47.64
3
A
CYS
34
-55.87
-179.05
3
A
CYS
50
-90.45
-135.20
3
A
GLN
51
-138.16
-39.36
3
A
SER
56
-84.48
-83.20
3
A
ASN
57
170.80
42.10
3
A
GLU
64
-57.56
176.16
3
A
PRO
65
-59.32
171.11
3
A
VAL
71
-153.30
-89.07
3
B
SER
31
-118.98
71.50
3
B
CYS
34
-62.67
-178.30
3
B
LYS
43
-68.57
70.96
3
B
PRO
45
-63.31
-71.53
3
B
CYS
50
-69.40
-136.17
3
B
GLN
51
-137.67
-37.44
3
B
TYR
62
-130.00
-61.87
3
B
VAL
71
-153.27
-89.16
4
A
VAL
32
53.72
84.75
4
A
PRO
45
-64.17
-72.24
4
A
CYS
50
-66.82
-140.71
4
A
GLN
51
-137.39
-41.56
4
A
SER
56
-84.66
-84.38
4
A
ASN
57
172.19
40.06
4
A
LYS
67
45.83
95.47
4
A
VAL
71
-164.82
-94.85
4
B
CYS
34
-55.34
-178.38
4
B
CYS
50
-90.56
-134.80
4
B
GLN
51
-136.04
-38.43
4
B
ASN
57
39.26
61.77
4
B
LYS
67
-44.93
93.82
4
B
VAL
71
-164.82
-94.76
5
A
SER
31
-129.36
-54.66
5
A
CYS
50
-78.43
-136.43
5
A
GLN
51
-138.61
-38.04
5
A
SER
56
-83.57
-84.10
5
A
ASN
57
171.74
39.93
5
A
TYR
62
-135.46
-74.89
5
A
GLU
64
-165.66
75.55
5
A
PRO
65
-61.84
-72.32
5
A
SER
66
-171.96
142.94
5
A
LYS
67
-48.68
93.83
5
A
VAL
70
-151.23
86.57
5
B
VAL
32
53.07
98.14
5
B
CYS
34
-68.51
-178.84
5
B
CYS
50
-82.92
-134.52
5
B
GLN
51
-140.57
-38.98
5
B
SER
56
-83.80
-83.75
5
B
ASN
57
172.59
39.87
5
B
LYS
67
46.47
95.70
5
B
VAL
70
-151.71
86.61
6
A
LYS
43
-112.30
75.43
6
A
CYS
50
-65.27
-138.34
6
A
GLN
51
-138.56
-37.16
6
A
ASN
57
39.55
63.55
6
A
GLU
64
-157.03
63.69
6
A
VAL
71
-153.95
-85.18
6
B
CYS
34
-57.82
-179.92
6
B
LYS
43
-67.94
76.59
6
B
CYS
50
-64.81
-138.15
6
B
GLN
51
-137.27
-41.50
6
B
SER
56
-81.86
-84.01
6
B
ASN
57
172.96
38.47
6
B
GLU
64
-158.47
83.25
6
B
VAL
71
-153.91
-85.08
7
A
CYS
34
-63.22
-179.92
7
A
CYS
50
-89.25
-138.91
7
A
GLN
51
-134.19
-40.51
7
A
SER
56
-83.66
-83.31
7
A
ASN
57
171.05
40.78
7
A
TYR
62
-131.85
-148.24
7
A
SER
66
-92.60
42.99
7
A
VAL
70
-178.67
105.81
7
A
VAL
71
-154.39
-87.35
7
A
LEU
97
-164.57
26.91
7
B
CYS
34
-56.98
-179.77
7
B
CYS
50
-89.26
-135.40
7
B
GLN
51
-136.52
-37.79
7
B
LEU
63
-106.05
-164.80
7
B
VAL
70
-178.39
105.98
7
B
VAL
71
-154.54
-87.57
7
B
LEU
97
-164.36
26.82
8
A
CYS
34
-63.95
-173.94
8
A
CYS
50
-64.67
-140.43
8
A
GLN
51
-135.44
-40.22
8
A
SER
56
-84.13
-84.26
8
A
ASN
57
171.93
39.82
8
A
TYR
62
-124.49
-165.68
8
A
GLU
64
-163.12
71.95
8
A
PRO
65
-61.35
-174.59
8
A
LYS
68
-173.72
110.03
8
A
VAL
71
-153.53
-88.13
8
B
SER
31
46.37
88.53
8
B
CYS
34
-63.52
-178.98
8
B
CYS
50
-65.63
-137.35
8
B
GLN
51
-138.29
-38.85
8
B
GLU
64
-175.26
137.22
8
B
LYS
68
-174.37
110.22
8
B
VAL
71
-153.42
-88.08
9
A
CYS
50
-70.53
-137.60
9
A
GLN
51
-139.23
-39.71
9
A
SER
56
-85.81
-84.19
9
A
ASN
57
172.49
40.16
9
A
PRO
65
-62.94
80.32
9
A
SER
66
51.99
-167.64
9
A
LYS
67
-55.59
99.54
9
A
VAL
71
-153.72
-85.96
9
B
CYS
50
-64.44
-139.30
9
B
GLN
51
-137.45
-39.02
9
B
SER
56
-85.00
-84.72
9
B
ASN
57
172.21
39.94
9
B
SER
66
-146.58
35.01
9
B
LYS
67
-59.37
100.37
9
B
VAL
71
-153.60
-86.12
10
A
PRO
45
-63.09
-70.15
10
A
CYS
50
-72.82
-136.55
10
A
GLN
51
-140.53
-37.86
10
A
SER
56
-85.02
-84.90
10
A
ASN
57
172.80
39.88
10
A
TYR
62
-112.77
-160.47
10
A
SER
66
-177.16
114.72
10
A
LYS
67
-146.72
15.08
10
A
VAL
71
-153.51
-90.32
10
B
SER
31
-171.95
-155.73
10
B
CYS
34
-59.13
179.23
10
B
LYS
43
-69.55
88.71
10
B
CYS
50
-64.98
-137.95
10
B
GLN
51
-138.43
-40.74
10
B
SER
56
-86.01
-84.16
10
B
ASN
57
172.73
39.85
10
B
GLU
64
179.78
-58.93
10
B
SER
66
-98.57
38.14
10
B
VAL
71
-153.43
-90.31
11
A
PRO
45
-63.91
-72.73
11
A
CYS
50
-65.15
-139.33
11
A
GLN
51
-138.42
-38.03
11
A
GLU
64
-163.97
64.14
11
A
SER
66
-100.70
40.48
11
A
LYS
67
-155.19
-43.02
11
A
VAL
71
-163.30
-79.38
11
B
LYS
43
-69.09
86.91
11
B
PRO
45
-63.40
-70.63
11
B
CYS
50
-87.69
-137.98
11
B
GLN
51
-136.78
-38.45
11
B
SER
56
-84.27
-84.49
11
B
ASN
57
173.10
39.74
11
B
TYR
62
-109.18
-70.69
11
B
LEU
63
-173.09
139.91
11
B
GLU
64
-167.34
75.71
11
B
LYS
67
-152.86
-42.91
11
B
VAL
71
-163.18
-80.17
12
A
SER
31
-156.24
-151.58
12
A
CYS
50
-65.09
-139.78
12
A
GLN
51
-136.66
-38.72
12
A
SER
56
-85.13
-84.96
12
A
ASN
57
173.37
39.43
12
A
TYR
62
-123.75
-63.29
12
A
LEU
63
-143.69
-55.86
12
A
PRO
65
-62.76
-155.29
12
A
VAL
70
179.74
97.25
12
A
VAL
71
-154.40
-81.44
12
A
LEU
98
-163.08
-82.23
12
A
GLU
99
-176.63
-35.95
12
B
SER
31
-172.46
89.31
12
B
CYS
50
-89.80
-139.79
12
B
GLN
51
-133.50
-39.64
12
B
SER
56
-83.02
-83.47
12
B
ASN
57
170.51
40.26
12
B
TYR
62
-123.73
-146.71
12
B
SER
66
-133.29
-68.63
12
B
VAL
70
179.84
97.23
12
B
VAL
71
-154.40
-81.74
12
B
LEU
98
-163.28
-82.25
12
B
GLU
99
-176.58
-36.02
13
A
CYS
34
-54.64
-178.12
13
A
LYS
43
-67.87
72.11
13
A
PRO
45
-63.67
-73.66
13
A
CYS
50
-90.53
-137.14
13
A
GLN
51
-134.64
-38.79
13
A
SER
56
-84.72
-84.20
13
A
ASN
57
171.60
40.81
13
A
PRO
65
-63.28
-75.91
13
A
VAL
71
-151.34
-148.70
13
B
CYS
34
-65.37
-179.60
13
B
CYS
50
-65.67
-138.48
13
B
GLN
51
-138.78
-37.35
13
B
ASN
57
-163.05
66.03
13
B
ALA
58
-31.65
89.43
13
B
ILE
59
-150.72
55.39
13
B
TYR
62
-98.82
-66.69
13
B
GLU
64
-174.51
88.69
13
B
SER
66
-148.90
-73.75
13
B
VAL
71
-151.53
-149.11
model building
X-PLOR
3.851
refinement
X-PLOR
3.851
phasing
X-PLOR
3.851
STRUCTURE AND MOBILITY OF THE PUT3 DIMER: A DNA PINCER, NMR, 13 STRUCTURES
1
N
N
1
N
N
2
N
N
2
N
N
2
N
N
2
N
N
A
LEU
35
A
LEU
6
HELX_P
A
LYS
39
A
LYS
10
1
1
5
A
LYS
52
A
LYS
23
HELX_P
A
THR
55
A
THR
26
1
2
4
A
THR
73
A
THR
44
HELX_P
A
LEU
97
A
LEU
68
1
3
25
B
LEU
35
B
LEU
6
HELX_P
B
ARG
40
B
ARG
11
1
4
6
B
LYS
52
B
LYS
23
HELX_P
B
THR
55
B
THR
26
1
5
4
B
THR
73
B
THR
44
HELX_P
B
LEU
97
B
LEU
68
1
6
25
metalc
2.669
A
CYS
34
A
SG
CYS
5
1_555
A
ZN
101
C
ZN
ZN
1_555
metalc
2.321
A
CYS
34
A
SG
CYS
5
1_555
A
ZN
102
D
ZN
ZN
1_555
metalc
2.611
A
CYS
37
A
SG
CYS
8
1_555
A
ZN
101
C
ZN
ZN
1_555
metalc
2.322
A
CYS
44
A
SG
CYS
15
1_555
A
ZN
101
C
ZN
ZN
1_555
metalc
2.735
A
CYS
50
A
SG
CYS
21
1_555
A
ZN
101
C
ZN
ZN
1_555
metalc
2.689
A
CYS
50
A
SG
CYS
21
1_555
A
ZN
102
D
ZN
ZN
1_555
metalc
2.854
A
CYS
53
A
SG
CYS
24
1_555
A
ZN
102
D
ZN
ZN
1_555
metalc
2.852
A
CYS
60
A
SG
CYS
31
1_555
A
ZN
102
D
ZN
ZN
1_555
metalc
2.607
B
CYS
34
B
SG
CYS
5
1_555
B
ZN
101
E
ZN
ZN
1_555
metalc
2.280
B
CYS
34
B
SG
CYS
5
1_555
B
ZN
102
F
ZN
ZN
1_555
metalc
2.747
B
CYS
37
B
SG
CYS
8
1_555
B
ZN
101
E
ZN
ZN
1_555
metalc
2.357
B
CYS
44
B
SG
CYS
15
1_555
B
ZN
101
E
ZN
ZN
1_555
metalc
2.740
B
CYS
50
B
SG
CYS
21
1_555
B
ZN
101
E
ZN
ZN
1_555
metalc
2.667
B
CYS
50
B
SG
CYS
21
1_555
B
ZN
102
F
ZN
ZN
1_555
metalc
2.893
B
CYS
53
B
SG
CYS
24
1_555
B
ZN
102
F
ZN
ZN
1_555
metalc
2.857
B
CYS
60
B
SG
CYS
31
1_555
B
ZN
102
F
ZN
ZN
1_555
TRANSCRIPTION REGULATION
TRANSCRIPTION REGULATION, PUT3
A
ASN
48
A
ASN
19
1
A
PRO
49
A
PRO
20
-0.79
B
ASN
48
B
ASN
19
1
B
PRO
49
B
PRO
20
-0.75
A
ASN
48
A
ASN
19
2
A
PRO
49
A
PRO
20
-0.81
B
ASN
48
B
ASN
19
2
B
PRO
49
B
PRO
20
-0.55
A
ASN
48
A
ASN
19
3
A
PRO
49
A
PRO
20
-0.77
B
ASN
48
B
ASN
19
3
B
PRO
49
B
PRO
20
-1.07
A
ASN
48
A
ASN
19
4
A
PRO
49
A
PRO
20
-0.74
B
ASN
48
B
ASN
19
4
B
PRO
49
B
PRO
20
-1.05
A
ASN
48
A
ASN
19
5
A
PRO
49
A
PRO
20
-0.74
B
ASN
48
B
ASN
19
5
B
PRO
49
B
PRO
20
-0.48
A
ASN
48
A
ASN
19
6
A
PRO
49
A
PRO
20
-0.97
B
ASN
48
B
ASN
19
6
B
PRO
49
B
PRO
20
-0.95
A
ASN
48
A
ASN
19
7
A
PRO
49
A
PRO
20
-0.67
B
ASN
48
B
ASN
19
7
B
PRO
49
B
PRO
20
-0.52
A
ASN
48
A
ASN
19
8
A
PRO
49
A
PRO
20
-0.72
B
ASN
48
B
ASN
19
8
B
PRO
49
B
PRO
20
-0.97
A
ASN
48
A
ASN
19
9
A
PRO
49
A
PRO
20
-0.64
B
ASN
48
B
ASN
19
9
B
PRO
49
B
PRO
20
-0.84
A
ASN
48
A
ASN
19
10
A
PRO
49
A
PRO
20
-0.84
B
ASN
48
B
ASN
19
10
B
PRO
49
B
PRO
20
-0.77
A
ASN
48
A
ASN
19
11
A
PRO
49
A
PRO
20
-0.79
B
ASN
48
B
ASN
19
11
B
PRO
49
B
PRO
20
-0.79
A
ASN
48
A
ASN
19
12
A
PRO
49
A
PRO
20
-0.83
B
ASN
48
B
ASN
19
12
B
PRO
49
B
PRO
20
-0.90
A
ASN
48
A
ASN
19
13
A
PRO
49
A
PRO
20
-0.76
B
ASN
48
B
ASN
19
13
B
PRO
49
B
PRO
20
-0.68
PUT3_YEAST
UNP
1
1
P25502
MVTDQGSRHSIQSKQPAYVNKQPQKRQQRSSVACLSCRKRHIKCPGGNPCQKCVTSNAICEYLEPSKKIVVSTKYLQQLQ
KDLNDKTEENNRLKALLLERPVSVRGKDNSDDDERHINNAPSSDTLEVSSAPAAPIFDLMSNSNTASDNDNDDDNSNRIT
NNRSYDHSLEKYYKKAISIFKQPANANGENGNGANGHEDDDEDDEEISTNFAQRSGRLIESHNGFHYFVGSSSMTLFGLE
IQSLVTKYISVKNFRPLPINTKNKILNSNLNPAISSFINSNNYLFSSYNFLNPISTIVNLNSINDNLSPLMFKIILKSDT
DGSSGQEEVIQFQLPSYNYTKLLIDCFINYNDGCFYFFNEGLVKCGINKLYLENKWLYYDNTKKALDNENDPILQAVWFC
KILLILAVGEMYLGSINNEMLKNYSNQPKLPGSKFFQMGSKIFNCLFSSERLENVTKKGGIEVLLLYAFFLQVADYTLAS
YFYFGQALRTCLILGLHVDSQSDTLSRYEIEHHRRLWWTVYMFERMLSSKAGLPLSFTDYTISTALPADIDDETIEEKNS
HYVFRKAELISNCVTIVKINAQILSKLYQRQPETNIIITLKVVIKQLLEWRNNLSDSLQVDFTQKDEDFKISRLSTNMFT
EYFQGINLAVRPLLFHFASIQLKRFKTSNTFVNLQNYSATISSLLTCSLHASVNTIRSLWSLLQNSMLAMFSYMDREYLF
TSSCTLLLFNTAFGIHEQTLYHLDHSLEIFTQMRNLGNIPAGLRRAQLLTLMANLDFHGIMNDLITKYNDILKFDSMNCE
NDNIVEDSNEPKRETEKCKPHKDGDRIDPSIIDCDKSNTNTNMIKNESISNIVSILPEGAKPTLTDYSNGNNDVNDINVN
NSEPSTFFDIITASLENSYQTTLTEKGSQVMEKNMDQLDSVHNLNDDDLQQLLEDLGNIDHSDEKLWKEITDQAMWLGNT
MDPTAAAGSEIDFTDYLGP
31
100
1AJY
31
100
P25502
A
1
2
71
31
100
1AJY
31
100
P25502
B
1
2
71
2
anti-parallel
A
ILE
69
A
ILE
40
A
THR
73
A
THR
44
B
ILE
69
B
ILE
40
B
THR
73
B
THR
44
BINDING SITE FOR RESIDUE ZN A 101
A
ZN
101
Software
5
BINDING SITE FOR RESIDUE ZN A 102
A
ZN
102
Software
6
BINDING SITE FOR RESIDUE ZN B 101
B
ZN
101
Software
5
BINDING SITE FOR RESIDUE ZN B 102
B
ZN
102
Software
6
A
CYS
34
A
CYS
5
5
1_555
A
CYS
37
A
CYS
8
5
1_555
A
CYS
44
A
CYS
15
5
1_555
A
CYS
50
A
CYS
21
5
1_555
A
ZN
102
D
ZN
5
1_555
A
CYS
34
A
CYS
5
6
1_555
A
CYS
50
A
CYS
21
6
1_555
A
CYS
53
A
CYS
24
6
1_555
A
ILE
59
A
ILE
30
6
1_555
A
CYS
60
A
CYS
31
6
1_555
A
ZN
101
C
ZN
6
1_555
B
CYS
34
B
CYS
5
5
1_555
B
CYS
37
B
CYS
8
5
1_555
B
CYS
44
B
CYS
15
5
1_555
B
CYS
50
B
CYS
21
5
1_555
B
ZN
102
F
ZN
5
1_555
B
CYS
34
B
CYS
5
6
1_555
B
CYS
50
B
CYS
21
6
1_555
B
CYS
53
B
CYS
24
6
1_555
B
ILE
59
B
ILE
30
6
1_555
B
CYS
60
B
CYS
31
6
1_555
B
ZN
101
E
ZN
6
1_555
1
P 1