0.007561 0.004366 0.000000 0.000000 0.008731 0.000000 0.000000 0.000000 0.022099 0.00000 0.00000 0.00000 Li, T. Jin, Y. Vershon, A.K. Wolberger, C. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 6 90.00 90.00 120.00 132.250 132.250 45.250 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C10 H14 N5 O6 P 331.222 y 2'-DEOXYADENOSINE-5'-MONOPHOSPHATE DNA linking C9 H14 N3 O7 P 307.197 y 2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE DNA linking C10 H14 N5 O7 P 347.221 y 2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE DNA linking C10 H15 N2 O8 P 322.208 y THYMIDINE-5'-MONOPHOSPHATE DNA linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking UK Nucleic Acids Res. NARHAD 0389 0305-1048 26 5707 5718 10.1093/nar/26.24.5707 9838003 Crystal structure of the MATa1/MATalpha2 homeodomain heterodimer in complex with DNA containing an A-tract. 1998 US Proteins PSFGEY 0867 0887-3585 21 161 Crystallization and Preliminary X-Ray Diffraction Studies of an A1/Alpha 2/DNA Ternary Complex 1995 US Science SCIEAS 0038 0036-8075 270 262 Crystal Structure of the MATa1/MAT Alpha 2 Homeodomain Heterodimer Bound to DNA 1995 US Science SCIEAS 0038 0036-8075 270 1105 Erratum. Crystal Structure of the MATa1/MAT Alpha 2 Homeodomain Heterodimer Bound to DNA 1995 10.2210/pdb1akh/pdb pdb_00001akh 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 94.00 1 IMAGE PLATE 1995-05 RIGAKU SILICON CRYSTAL SINGLE WAVELENGTH M x-ray 1 1.0 ROTATING ANODE RIGAKU RU200 6413.210 DNA (5'-D(*TP*AP*CP*AP*TP*GP*TP*AP*AP*AP*AP*AP*TP*TP*TP*AP*C P*AP*TP*CP*A)-3') 1 syn polymer 6466.217 DNA (5'-D(*TP*AP*TP*GP*AP*TP*GP*TP*AP*AP*AP*TP*TP*TP*TP*TP*A P*CP*AP*TP*G)-3') 1 syn polymer 7165.479 PROTEIN (MATING-TYPE PROTEIN A-1) 1 man polymer 9773.306 PROTEIN (MATING-TYPE PROTEIN ALPHA-2) 1 man polymer 18.015 water 51 nat water no no (DT)(DA)(DC)(DA)(DT)(DG)(DT)(DA)(DA)(DA)(DA)(DA)(DT)(DT)(DT)(DA)(DC)(DA)(DT)(DC) (DA) TACATGTAAAAATTTACATCA C polydeoxyribonucleotide no no (DT)(DA)(DT)(DG)(DA)(DT)(DG)(DT)(DA)(DA)(DA)(DT)(DT)(DT)(DT)(DT)(DA)(DC)(DA)(DT) (DG) TATGATGTAAATTTTTACATG D polydeoxyribonucleotide no no KKEKSPKGKSSISPQARAFLEEVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK KKEKSPKGKSSISPQARAFLEEVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK A polypeptide(L) no no TKPYRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEKTITIAPELADLLSGEPLAK KKE TKPYRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEKTITIAPELADLLSGEPLAK KKE B polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n baker's yeast Saccharomyces Escherichia sample MAT A1 RESIDUES 66 - 126 4932 Saccharomyces cerevisiae MAT A1 RESIDUES 66 - 126 562 Escherichia coli T7 PROMOTOR PMS-K66 baker's yeast Saccharomyces Escherichia sample MAT ALPHA2 RESIDUES 128 - 210 4932 Saccharomyces cerevisiae MAT ALPHA2 RESIDUES 128 - 210 562 Escherichia coli TAC PROMOTER PAV105 3 3.78 67.6000 VAPOR DIFFUSION, HANGING DROP 7.0 100MM HEPES PH 7.0, 20MM CACL2, 5MM [CO(NH3)6]CL3., VAPOR DIFFUSION, HANGING DROP, temperature 295.00K 295.00 WATER 1 HEPES BUFFER 1 CACL2 1 COBALT HEXAMINE 1 WATER 2 HEPES BUFFER 2 CACL2 2 -9.891 1 19 C 3 D 42 2.528 C_DC3:DG42_D 1 -9.893 0.827 0.281 -0.095 12.742 1 20 C 4 D 41 -0.637 C_DA4:DT41_D 2 -9.389 0.907 0.324 -0.152 8.835 1 20 C 5 D 40 4.006 C_DT5:DA40_D 3 -7.058 0.066 -0.261 -0.326 -8.564 1 19 C 6 D 39 0.749 C_DG6:DC39_D 4 -7.158 0.128 -0.370 -0.474 -8.615 1 20 C 7 D 38 -0.170 C_DT7:DA38_D 5 -10.627 0.006 0.361 -0.138 -8.761 1 20 C 8 D 37 -2.588 C_DA8:DT37_D 6 -5.498 0.652 -0.433 -0.193 -5.870 1 20 C 9 D 36 3.105 C_DA9:DT36_D 7 -21.495 0.390 -0.285 -0.115 -6.359 1 20 C 10 D 35 4.674 C_DA10:DT35_D 8 -19.696 0.515 -0.089 -0.134 4.503 1 20 C 11 D 34 -1.876 C_DA11:DT34_D 9 -13.132 0.222 0.058 -0.423 -6.328 1 20 C 12 D 33 -10.508 C_DA12:DT33_D 10 -18.465 0.493 -0.336 -0.448 -5.066 1 20 C 13 D 32 -3.937 C_DT13:DA32_D 11 -18.140 -0.178 0.267 -0.467 -3.561 1 20 C 14 D 31 1.076 C_DT14:DA31_D 12 -15.994 -0.224 0.099 -0.107 -2.858 1 20 C 15 D 30 -0.435 C_DT15:DA30_D 13 -14.741 0.922 -0.226 -0.478 5.012 1 20 C 16 D 29 -0.856 C_DA16:DT29_D 14 -12.052 0.309 -0.019 -0.269 -0.263 1 19 C 17 D 28 0.666 C_DC17:DG28_D 15 -10.902 -0.426 -0.058 -0.564 4.402 1 20 C 18 D 27 7.364 C_DA18:DT27_D 16 -14.473 -0.572 0.373 -0.525 1.044 1 20 C 19 D 26 5.578 C_DT19:DA26_D 17 -14.490 -0.317 0.129 -0.196 -4.992 1 19 C 20 D 25 -6.204 C_DC20:DG25_D 18 -11.402 0.031 0.346 -0.384 6.571 1 20 C 21 D 24 -9.735 C_DA21:DT24_D 19 -4.639 0.837 0.298 -0.130 2.845 35.742 C C 3 4 9.740 D D 42 41 2.792 5.952 -0.384 0.509 CC_DC3DA4:DT41DG42_DD 1 -0.824 1.348 35.250 0.084 0.523 3.521 27.013 C C 4 5 -0.251 D D 41 40 3.459 -0.117 0.645 -0.611 CC_DA4DT5:DA40DT41_DD 2 4.932 -10.616 26.567 -1.277 -0.031 3.244 42.233 C C 5 6 13.747 D D 40 39 3.508 9.821 -0.059 -0.792 CC_DT5DG6:DC39DA40_DD 3 -1.228 1.719 41.108 -2.156 -0.050 3.235 28.697 C C 6 7 5.310 D D 39 38 3.316 2.624 -0.166 -0.743 CC_DG6DT7:DA38DC39_DD 4 -3.085 6.243 28.415 -2.094 -0.364 3.088 39.705 C C 7 8 10.412 D D 38 37 3.272 7.035 -0.790 -0.553 CC_DT7DA8:DT37DA38_DD 5 2.013 -2.979 39.052 -1.618 1.394 3.244 31.399 C C 8 9 6.447 D D 37 36 3.234 3.481 0.225 0.376 CC_DA8DA9:DT36DT37_DD 6 -1.239 2.294 31.187 0.046 -0.647 3.289 32.433 C C 9 10 3.305 D D 36 35 3.302 1.845 -0.085 -0.132 CC_DA9DA10:DT35DT36_DD 7 0.397 -0.711 32.379 -0.564 0.223 3.037 31.490 C C 10 11 -6.990 D D 35 34 3.028 -3.785 0.107 -0.246 CC_DA10DA11:DT34DT35_DD 8 0.338 -0.625 31.265 0.204 -0.138 3.457 44.889 C C 11 12 -6.542 D D 34 33 3.498 -4.986 -0.857 0.051 CC_DA11DA12:DT33DT34_DD 9 0.846 -1.110 44.618 0.548 1.204 3.223 32.225 C C 12 13 -9.680 D D 33 32 3.139 -5.333 0.018 -0.968 CC_DA12DT13:DA32DT33_DD 10 -4.431 8.043 31.489 -0.809 -0.809 3.253 40.598 C C 13 14 -7.183 D D 32 31 3.205 -4.970 0.343 -0.472 CC_DT13DT14:DA31DA32_DD 11 2.347 -3.393 40.240 -0.132 -0.235 3.193 41.947 C C 14 15 4.692 D D 31 30 3.185 3.351 0.096 0.274 CC_DT14DT15:DA30DA31_DD 12 3.767 -5.273 41.656 0.042 0.249 3.392 27.858 C C 15 16 23.395 D D 30 29 3.165 10.964 0.026 1.241 CC_DT15DA16:DT29DA30_DD 13 -1.534 3.274 25.604 -0.167 -0.438 2.911 27.787 C C 16 17 17.161 D D 29 28 3.314 8.119 0.848 -1.097 CC_DA16DC17:DG28DT29_DD 14 2.007 -4.242 26.522 -4.186 -1.295 3.268 36.237 C C 17 18 16.389 D D 28 27 3.216 10.065 0.475 0.729 CC_DC17DA18:DT27DG28_DD 15 -1.687 2.747 34.817 -0.258 -1.004 3.238 34.950 C C 18 19 8.224 D D 27 26 3.353 4.917 0.561 -0.888 CC_DA18DT19:DA26DT27_DD 16 3.280 -5.485 34.462 -2.232 -0.432 3.329 35.444 C C 19 20 7.786 D D 26 25 3.414 4.725 -0.585 -0.644 CC_DT19DC20:DG25DA26_DD 17 -1.926 3.174 35.086 -1.776 0.669 2.994 36.313 C C 20 21 9.189 D D 25 24 3.019 5.705 -0.318 0.109 CC_DC20DA21:DT24DG25_DD 18 0.697 -1.123 35.871 -0.563 0.600 database_2 pdbx_initial_refinement_model struct_ref_seq_dif repository Initial release Version format compliance Version format compliance Database references Refinement description 1 0 1998-05-20 1 1 2008-05-22 1 2 2011-07-13 1 3 2023-08-02 _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_ref_seq_dif.details BNL Y NDB 1997-05-19 REL HOH water 1YRN PDB ENTRY 1YRN PDB experimental model HOH 600 5 HOH HOH 600 C HOH 602 5 HOH HOH 602 C HOH 603 5 HOH HOH 603 C HOH 606 5 HOH HOH 606 C HOH 608 5 HOH HOH 608 C HOH 610 5 HOH HOH 610 C HOH 615 5 HOH HOH 615 C HOH 617 5 HOH HOH 617 C HOH 625 5 HOH HOH 625 C HOH 631 5 HOH HOH 631 C HOH 632 5 HOH HOH 632 C HOH 634 5 HOH HOH 634 C HOH 635 5 HOH HOH 635 C HOH 636 5 HOH HOH 636 C HOH 643 5 HOH HOH 643 C HOH 650 5 HOH HOH 650 C HOH 609 5 HOH HOH 609 D HOH 612 5 HOH HOH 612 D HOH 613 5 HOH HOH 613 D HOH 614 5 HOH HOH 614 D HOH 616 5 HOH HOH 616 D HOH 619 5 HOH HOH 619 D HOH 621 5 HOH HOH 621 D HOH 622 5 HOH HOH 622 D HOH 630 5 HOH HOH 630 D HOH 637 5 HOH HOH 637 D HOH 638 5 HOH HOH 638 D HOH 644 5 HOH HOH 644 D HOH 645 5 HOH HOH 645 D HOH 646 5 HOH HOH 646 D HOH 647 5 HOH HOH 647 D HOH 629 5 HOH HOH 629 A HOH 639 5 HOH HOH 639 A HOH 640 5 HOH HOH 640 A HOH 641 5 HOH HOH 641 A HOH 642 5 HOH HOH 642 A HOH 648 5 HOH HOH 648 A HOH 601 5 HOH HOH 601 B HOH 604 5 HOH HOH 604 B HOH 605 5 HOH HOH 605 B HOH 607 5 HOH HOH 607 B HOH 611 5 HOH HOH 611 B HOH 618 5 HOH HOH 618 B HOH 620 5 HOH HOH 620 B HOH 623 5 HOH HOH 623 B HOH 624 5 HOH HOH 624 B HOH 626 5 HOH HOH 626 B HOH 627 5 HOH HOH 627 B HOH 628 5 HOH HOH 628 B HOH 633 5 HOH HOH 633 B HOH 649 5 HOH HOH 649 B T 1 n 1 DT 1 C A 2 n 2 DA 2 C C 3 n 3 DC 3 C A 4 n 4 DA 4 C T 5 n 5 DT 5 C G 6 n 6 DG 6 C T 7 n 7 DT 7 C A 8 n 8 DA 8 C A 9 n 9 DA 9 C A 10 n 10 DA 10 C A 11 n 11 DA 11 C A 12 n 12 DA 12 C T 13 n 13 DT 13 C T 14 n 14 DT 14 C T 15 n 15 DT 15 C A 16 n 16 DA 16 C C 17 n 17 DC 17 C A 18 n 18 DA 18 C T 19 n 19 DT 19 C C 20 n 20 DC 20 C A 21 n 21 DA 21 C T 22 n 1 DT 22 D A 23 n 2 DA 23 D T 24 n 3 DT 24 D G 25 n 4 DG 25 D A 26 n 5 DA 26 D T 27 n 6 DT 27 D G 28 n 7 DG 28 D T 29 n 8 DT 29 D A 30 n 9 DA 30 D A 31 n 10 DA 31 D A 32 n 11 DA 32 D T 33 n 12 DT 33 D T 34 n 13 DT 34 D T 35 n 14 DT 35 D T 36 n 15 DT 36 D T 37 n 16 DT 37 D A 38 n 17 DA 38 D C 39 n 18 DC 39 D A 40 n 19 DA 40 D T 41 n 20 DT 41 D G 42 n 21 DG 42 D n 1 66 A n 2 67 A n 3 68 A n 4 69 A n 5 70 A n 6 71 A n 7 72 A n 8 73 A n 9 74 A n 10 75 A n 11 76 A ILE 77 n 12 ILE 77 A SER 78 n 13 SER 78 A PRO 79 n 14 PRO 79 A GLN 80 n 15 GLN 80 A ALA 81 n 16 ALA 81 A ARG 82 n 17 ARG 82 A ALA 83 n 18 ALA 83 A PHE 84 n 19 PHE 84 A LEU 85 n 20 LEU 85 A GLU 86 n 21 GLU 86 A GLU 87 n 22 GLU 87 A VAL 88 n 23 VAL 88 A PHE 89 n 24 PHE 89 A ARG 90 n 25 ARG 90 A ARG 91 n 26 ARG 91 A LYS 92 n 27 LYS 92 A GLN 93 n 28 GLN 93 A SER 94 n 29 SER 94 A LEU 95 n 30 LEU 95 A ASN 96 n 31 ASN 96 A SER 97 n 32 SER 97 A LYS 98 n 33 LYS 98 A GLU 99 n 34 GLU 99 A LYS 100 n 35 LYS 100 A GLU 101 n 36 GLU 101 A GLU 102 n 37 GLU 102 A VAL 103 n 38 VAL 103 A ALA 104 n 39 ALA 104 A LYS 105 n 40 LYS 105 A LYS 106 n 41 LYS 106 A CYS 107 n 42 CYS 107 A GLY 108 n 43 GLY 108 A ILE 109 n 44 ILE 109 A THR 110 n 45 THR 110 A PRO 111 n 46 PRO 111 A LEU 112 n 47 LEU 112 A GLN 113 n 48 GLN 113 A VAL 114 n 49 VAL 114 A ARG 115 n 50 ARG 115 A VAL 116 n 51 VAL 116 A TRP 117 n 52 TRP 117 A PHE 118 n 53 PHE 118 A ILE 119 n 54 ILE 119 A ASN 120 n 55 ASN 120 A LYS 121 n 56 LYS 121 A ARG 122 n 57 ARG 122 A MET 123 n 58 MET 123 A ARG 124 n 59 ARG 124 A SER 125 n 60 SER 125 A n 61 126 A THR 128 n 1 THR 128 B LYS 129 n 2 LYS 129 B PRO 130 n 3 PRO 130 B TYR 131 n 4 TYR 131 B ARG 132 n 5 ARG 132 B GLY 133 n 6 GLY 133 B HIS 134 n 7 HIS 134 B ARG 135 n 8 ARG 135 B PHE 136 n 9 PHE 136 B THR 137 n 10 THR 137 B LYS 138 n 11 LYS 138 B GLU 139 n 12 GLU 139 B ASN 140 n 13 ASN 140 B VAL 141 n 14 VAL 141 B ARG 142 n 15 ARG 142 B ILE 143 n 16 ILE 143 B LEU 144 n 17 LEU 144 B GLU 145 n 18 GLU 145 B SER 146 n 19 SER 146 B TRP 147 n 20 TRP 147 B PHE 148 n 21 PHE 148 B ALA 149 n 22 ALA 149 B LYS 150 n 23 LYS 150 B ASN 151 n 24 ASN 151 B ILE 152 n 25 ILE 152 B GLU 153 n 26 GLU 153 B ASN 154 n 27 ASN 154 B PRO 155 n 28 PRO 155 B TYR 156 n 29 TYR 156 B LEU 157 n 30 LEU 157 B ASP 158 n 31 ASP 158 B THR 159 n 32 THR 159 B LYS 160 n 33 LYS 160 B GLY 161 n 34 GLY 161 B LEU 162 n 35 LEU 162 B GLU 163 n 36 GLU 163 B ASN 164 n 37 ASN 164 B LEU 165 n 38 LEU 165 B MET 166 n 39 MET 166 B LYS 167 n 40 LYS 167 B ASN 168 n 41 ASN 168 B THR 169 n 42 THR 169 B SER 170 n 43 SER 170 B LEU 171 n 44 LEU 171 B SER 172 n 45 SER 172 B ARG 173 n 46 ARG 173 B ILE 174 n 47 ILE 174 B GLN 175 n 48 GLN 175 B ILE 176 n 49 ILE 176 B LYS 177 n 50 LYS 177 B ASN 178 n 51 ASN 178 B TRP 179 n 52 TRP 179 B VAL 180 n 53 VAL 180 B SER 181 n 54 SER 181 B ASN 182 n 55 ASN 182 B ARG 183 n 56 ARG 183 B ARG 184 n 57 ARG 184 B ARG 185 n 58 ARG 185 B LYS 186 n 59 LYS 186 B GLU 187 n 60 GLU 187 B LYS 188 n 61 LYS 188 B THR 189 n 62 THR 189 B ILE 190 n 63 ILE 190 B THR 191 n 64 THR 191 B ILE 192 n 65 ILE 192 B ALA 193 n 66 ALA 193 B PRO 194 n 67 PRO 194 B GLU 195 n 68 GLU 195 B LEU 196 n 69 LEU 196 B ALA 197 n 70 ALA 197 B ASP 198 n 71 ASP 198 B LEU 199 n 72 LEU 199 B LEU 200 n 73 LEU 200 B SER 201 n 74 SER 201 B GLY 202 n 75 GLY 202 B GLU 203 n 76 GLU 203 B PRO 204 n 77 PRO 204 B LEU 205 n 78 LEU 205 B n 79 206 B n 80 207 B n 81 208 B n 82 209 B n 83 210 B author_defined_assembly 4 tetrameric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 1 A CG GLU 87 C CG GLU 22 1 Y 1 A CD GLU 87 C CD GLU 22 1 Y 1 A OE1 GLU 87 C OE1 GLU 22 1 Y 1 A OE2 GLU 87 C OE2 GLU 22 1 Y 1 A CG ARG 90 C CG ARG 25 1 Y 1 A CD ARG 90 C CD ARG 25 1 Y 1 A NE ARG 90 C NE ARG 25 1 Y 1 A CZ ARG 90 C CZ ARG 25 1 Y 1 A NH1 ARG 90 C NH1 ARG 25 1 Y 1 A NH2 ARG 90 C NH2 ARG 25 1 Y 1 A CG GLU 101 C CG GLU 36 1 Y 1 A CD GLU 101 C CD GLU 36 1 Y 1 A OE1 GLU 101 C OE1 GLU 36 1 Y 1 A OE2 GLU 101 C OE2 GLU 36 1 Y 1 A OG SER 125 C OG SER 60 1 Y 1 B CG GLU 139 D CG GLU 12 1 Y 1 B CD GLU 139 D CD GLU 12 1 Y 1 B OE1 GLU 139 D OE1 GLU 12 1 Y 1 B OE2 GLU 139 D OE2 GLU 12 1 Y 1 B CG LYS 150 D CG LYS 23 1 Y 1 B CD LYS 150 D CD LYS 23 1 Y 1 B CE LYS 150 D CE LYS 23 1 Y 1 B NZ LYS 150 D NZ LYS 23 1 Y 1 B CG GLU 153 D CG GLU 26 1 Y 1 B CD GLU 153 D CD GLU 26 1 Y 1 B OE1 GLU 153 D OE1 GLU 26 1 Y 1 B OE2 GLU 153 D OE2 GLU 26 1 Y 1 B CG LYS 160 D CG LYS 33 1 Y 1 B CD LYS 160 D CD LYS 33 1 Y 1 B CE LYS 160 D CE LYS 33 1 Y 1 B NZ LYS 160 D NZ LYS 33 1 Y 1 B CG GLU 163 D CG GLU 36 1 Y 1 B CD GLU 163 D CD GLU 36 1 Y 1 B OE1 GLU 163 D OE1 GLU 36 1 Y 1 B OE2 GLU 163 D OE2 GLU 36 1 Y 1 B CG ASN 164 D CG ASN 37 1 Y 1 B OD1 ASN 164 D OD1 ASN 37 1 Y 1 B ND2 ASN 164 D ND2 ASN 37 1 Y 1 B CG LYS 167 D CG LYS 40 1 Y 1 B CD LYS 167 D CD LYS 40 1 Y 1 B CE LYS 167 D CE LYS 40 1 Y 1 B NZ LYS 167 D NZ LYS 40 1 Y 1 B CG1 ILE 190 D CG1 ILE 63 1 Y 1 B CG2 ILE 190 D CG2 ILE 63 1 Y 1 B CD1 ILE 190 D CD1 ILE 63 1 Y 1 B CG ASP 198 D CG ASP 71 1 Y 1 B OD1 ASP 198 D OD1 ASP 71 1 Y 1 B OD2 ASP 198 D OD2 ASP 71 1 Y 1 B OG SER 201 D OG SER 74 1 Y 1 B CG GLU 203 D CG GLU 76 1 Y 1 B CD GLU 203 D CD GLU 76 1 Y 1 B OE1 GLU 203 D OE1 GLU 76 1 Y 1 B OE2 GLU 203 D OE2 GLU 76 1 Y 1 B CG LEU 205 D CG LEU 78 1 Y 1 B CD1 LEU 205 D CD1 LEU 78 1 Y 1 B CD2 LEU 205 D CD2 LEU 78 1 Y 1 A LYS 66 C LYS 1 1 Y 1 A LYS 67 C LYS 2 1 Y 1 A GLU 68 C GLU 3 1 Y 1 A LYS 69 C LYS 4 1 Y 1 A SER 70 C SER 5 1 Y 1 A PRO 71 C PRO 6 1 Y 1 A LYS 72 C LYS 7 1 Y 1 A GLY 73 C GLY 8 1 Y 1 A LYS 74 C LYS 9 1 Y 1 A SER 75 C SER 10 1 Y 1 A SER 76 C SER 11 1 Y 1 A LYS 126 C LYS 61 1 Y 1 B ALA 206 D ALA 79 1 Y 1 B LYS 207 D LYS 80 1 Y 1 B LYS 208 D LYS 81 1 Y 1 B LYS 209 D LYS 82 1 Y 1 B GLU 210 D GLU 83 1 Y 1 7.39 1.20 110.70 118.09 D D D O5' P OP2 DT DT DT 24 24 24 N 1 B TYR 131 177.14 169.35 1 B PRO 155 -62.48 43.88 1 B THR 169 -176.66 -27.01 1 B PRO 204 -8.62 89.07 PARHCSDX.PRO TOPHCSDX.PRO RNA-DNA.PARM TOPH19.PEP PARAM11.INT RNA-DNA.TOP 34.70 0.3020000 0.008 0.2010000 2.500 6.000 12913 10.000 RANDOM 1 ISOTROPIC THROUGHOUT 2.000 MOLECULAR REPLACEMENT PDB ENTRY 1YRN 0.30 6.00 2.500 6.000 51 1907 0 855 1001 0.014 1.87 0.3890000 0.04 0.3240000 2.58 1 935 10 10.00 2.400 20.000 1AKH 15656 1.000 0.0540000 7.4000000 1 2.000 83.600 2.400 2.480 67.00 model building X-PLOR 3.0 refinement X-PLOR 3.0 data reduction R-AXIS data scaling R-AXIS phasing X-PLOR 3.0 MAT A1/ALPHA2/DNA TERNARY COMPLEX 1 N N 2 N N 3 N N 4 N N 5 N N 5 N N 5 N N 5 N N A SER 78 C SER 13 HELX_P A LYS 92 C LYS 27 1 1 15 A ASN 96 C ASN 31 HELX_P A GLY 108 C GLY 43 1 2 13 A THR 110 C THR 45 HELX_P A SER 125 C SER 60 1 3 16 B THR 137 D THR 10 HELX_P B ASN 151 D ASN 24 1 4 15 B ASP 158 D ASP 31 HELX_P B ASN 168 D ASN 41 1 5 11 B SER 172 D SER 45 HELX_P B ILE 190 D ILE 63 1 6 19 B ALA 193 D ALA 66 HELX_P B GLY 202 D GLY 75 1 7 10 hydrog WATSON-CRICK C DC 3 A N3 DC 3 1_555 D DG 42 B N1 DG 21 1_555 hydrog WATSON-CRICK C DC 3 A N4 DC 3 1_555 D DG 42 B O6 DG 21 1_555 hydrog WATSON-CRICK C DC 3 A O2 DC 3 1_555 D DG 42 B N2 DG 21 1_555 hydrog WATSON-CRICK C DA 4 A N1 DA 4 1_555 D DT 41 B N3 DT 20 1_555 hydrog WATSON-CRICK C DA 4 A N6 DA 4 1_555 D DT 41 B O4 DT 20 1_555 hydrog WATSON-CRICK C DT 5 A N3 DT 5 1_555 D DA 40 B N1 DA 19 1_555 hydrog WATSON-CRICK C DT 5 A O4 DT 5 1_555 D DA 40 B N6 DA 19 1_555 hydrog WATSON-CRICK C DG 6 A N1 DG 6 1_555 D DC 39 B N3 DC 18 1_555 hydrog WATSON-CRICK C DG 6 A N2 DG 6 1_555 D DC 39 B O2 DC 18 1_555 hydrog WATSON-CRICK C DG 6 A O6 DG 6 1_555 D DC 39 B N4 DC 18 1_555 hydrog WATSON-CRICK C DT 7 A N3 DT 7 1_555 D DA 38 B N1 DA 17 1_555 hydrog WATSON-CRICK C DT 7 A O4 DT 7 1_555 D DA 38 B N6 DA 17 1_555 hydrog WATSON-CRICK C DA 8 A N1 DA 8 1_555 D DT 37 B N3 DT 16 1_555 hydrog WATSON-CRICK C DA 8 A N6 DA 8 1_555 D DT 37 B O4 DT 16 1_555 hydrog WATSON-CRICK C DA 9 A N1 DA 9 1_555 D DT 36 B N3 DT 15 1_555 hydrog WATSON-CRICK C DA 9 A N6 DA 9 1_555 D DT 36 B O4 DT 15 1_555 hydrog WATSON-CRICK C DA 10 A N1 DA 10 1_555 D DT 35 B N3 DT 14 1_555 hydrog WATSON-CRICK C DA 10 A N6 DA 10 1_555 D DT 35 B O4 DT 14 1_555 hydrog WATSON-CRICK C DA 11 A N1 DA 11 1_555 D DT 34 B N3 DT 13 1_555 hydrog WATSON-CRICK C DA 11 A N6 DA 11 1_555 D DT 34 B O4 DT 13 1_555 hydrog WATSON-CRICK C DA 12 A N1 DA 12 1_555 D DT 33 B N3 DT 12 1_555 hydrog WATSON-CRICK C DA 12 A N6 DA 12 1_555 D DT 33 B O4 DT 12 1_555 hydrog WATSON-CRICK C DT 13 A N3 DT 13 1_555 D DA 32 B N1 DA 11 1_555 hydrog WATSON-CRICK C DT 13 A O4 DT 13 1_555 D DA 32 B N6 DA 11 1_555 hydrog WATSON-CRICK C DT 14 A N3 DT 14 1_555 D DA 31 B N1 DA 10 1_555 hydrog WATSON-CRICK C DT 14 A O4 DT 14 1_555 D DA 31 B N6 DA 10 1_555 hydrog WATSON-CRICK C DT 15 A N3 DT 15 1_555 D DA 30 B N1 DA 9 1_555 hydrog WATSON-CRICK C DT 15 A O4 DT 15 1_555 D DA 30 B N6 DA 9 1_555 hydrog WATSON-CRICK C DA 16 A N1 DA 16 1_555 D DT 29 B N3 DT 8 1_555 hydrog WATSON-CRICK C DA 16 A N6 DA 16 1_555 D DT 29 B O4 DT 8 1_555 hydrog WATSON-CRICK C DC 17 A N3 DC 17 1_555 D DG 28 B N1 DG 7 1_555 hydrog WATSON-CRICK C DC 17 A N4 DC 17 1_555 D DG 28 B O6 DG 7 1_555 hydrog WATSON-CRICK C DC 17 A O2 DC 17 1_555 D DG 28 B N2 DG 7 1_555 hydrog WATSON-CRICK C DA 18 A N1 DA 18 1_555 D DT 27 B N3 DT 6 1_555 hydrog WATSON-CRICK C DA 18 A N6 DA 18 1_555 D DT 27 B O4 DT 6 1_555 hydrog WATSON-CRICK C DT 19 A N3 DT 19 1_555 D DA 26 B N1 DA 5 1_555 hydrog WATSON-CRICK C DT 19 A O4 DT 19 1_555 D DA 26 B N6 DA 5 1_555 hydrog WATSON-CRICK C DC 20 A N3 DC 20 1_555 D DG 25 B N1 DG 4 1_555 hydrog WATSON-CRICK C DC 20 A N4 DC 20 1_555 D DG 25 B O6 DG 4 1_555 hydrog WATSON-CRICK C DC 20 A O2 DC 20 1_555 D DG 25 B N2 DG 4 1_555 hydrog WATSON-CRICK C DA 21 A N1 DA 21 1_555 D DT 24 B N3 DT 3 1_555 hydrog WATSON-CRICK C DA 21 A N6 DA 21 1_555 D DT 24 B O4 DT 3 1_555 DNA BINDING PROTEIN/DNA COMPLEX (TWO DNA-BINDING PROTEINS-DNA), COMPLEX, DNA-BINDING PROTEIN, DNA, TRANSCRIPTION REGULATION, DNA BINDING PROTEIN-DNA COMPLEX MATA1_YEAST UNP 3 66 P01366 MTAL2_YEAST UNP 4 128 Q6B2C0 1AKH PDB 1 1AKH 1AKH PDB 2 1AKH 66 126 1AKH 66 126 P01366 A 1 1 61 128 210 1AKH 128 210 Q6B2C0 B 2 1 83 1 21 1AKH 1 21 1AKH C 3 1 21 22 42 1AKH 22 42 1AKH D 4 1 21 1 GLN conflict GLU 87 1AKH A P01366 UNP 87 22 169 P 61