1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 Brodsky, A.S. Williamson, J.R. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 1 90.00 90.00 90.00 1.000 1.000 1.000 C10 H14 N5 O7 P 347.221 y ADENOSINE-5'-MONOPHOSPHATE RNA linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C9 H14 N3 O8 P 323.197 y CYTIDINE-5'-MONOPHOSPHATE RNA linking C10 H14 N5 O8 P 363.221 y GUANOSINE-5'-MONOPHOSPHATE RNA linking C9 H13 N2 O9 P 324.181 y URIDINE-5'-MONOPHOSPHATE RNA linking UK J.Mol.Biol. JMOBAK 0070 0022-2836 267 624 639 10.1006/jmbi.1996.0879 9126842 Solution structure of the HIV-2 TAR-argininamide complex. 1997 US J.Am.Chem.Soc. JACSAT 0004 0002-7863 118 519 Geometric Parameters in Nucleic Acids: Sugar and Phosphate Constituents 1996 UK J.Mol.Biol. JMOBAK 0070 0022-2836 253 313 The Structure of the Human Immunodeficiency Virus Type-1 Tar RNA Reveals Principles of RNA Recognition by Tat Protein 1995 US Proc.Natl.Acad.Sci.USA PNASA6 0040 0027-8424 90 3680 Role of RNA Structure in Arginine Recognition of Tar RNA 1993 US Science SCIEAS 0038 0036-8075 257 76 Conformation of the Tar RNA-Arginine Complex by NMR Spectroscopy 1992 10.2210/pdb1akx/pdb pdb_00001akx 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 9652.761 TAR RNA 1 syn polymer 175.209 ARGININE 1 syn non-polymer TAR no no GGCCAGAUUGAGCCUGGGAGCUCUCUGGCC GGCCAGAUUGAGCCUGGGAGCUCUCUGGCC A polyribonucleotide n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n -27.968 1 19 A 16 A 46 2.084 A_G16:C46_A 1 -19.553 -0.968 -0.500 -0.155 -10.747 1 19 A 17 A 45 1.532 A_G17:C45_A 2 -13.020 -0.109 0.306 -0.095 -0.040 1 19 A 18 A 44 -0.764 A_C18:G44_A 3 -14.641 -0.393 0.357 -0.073 2.523 1 19 A 19 A 43 -1.218 A_C19:G43_A 4 -16.093 -0.389 0.494 -0.084 0.732 1 20 A 20 A 42 0.750 A_A20:U42_A 5 -14.127 0.066 0.839 -0.291 -1.954 1 19 A 21 A 41 1.886 A_G21:C41_A 6 -20.319 0.100 0.473 -0.156 -7.025 1 20 A 22 A 40 -12.391 A_A22:U40_A 7 -25.893 0.275 0.782 -0.291 -15.655 1 19 A 26 A 39 -4.695 A_G26:C39_A 8 -21.388 -0.887 0.201 -0.332 -2.690 1 20 A 27 A 38 -4.816 A_A27:U38_A 9 -6.248 -0.181 0.500 -0.171 14.424 1 19 A 28 A 37 -2.587 A_G28:C37_A 10 -9.949 -0.083 0.781 -0.145 14.752 1 19 A 29 A 36 -2.367 A_C29:G36_A 11 -20.906 1.213 0.037 -0.426 -39.643 A 32 A 33 -4.402 A_G32:G33_A 12 -21.089 -6.437 2.155 0.602 2.617 33.130 A A 16 17 4.535 A A 46 45 2.766 2.574 0.224 -1.057 AA_G16G17:C45C46_AA 1 -4.901 8.633 32.677 -2.212 -1.077 2.860 33.510 A A 17 18 -2.629 A A 45 44 2.787 -1.515 -0.146 -1.911 AA_G17C18:G44C45_AA 2 1.484 -2.575 33.444 -3.099 0.464 2.488 29.344 A A 18 19 9.254 A A 44 43 2.862 4.668 0.287 -2.106 AA_C18C19:G43G44_AA 3 -1.019 2.021 28.961 -4.984 -0.747 2.979 36.162 A A 19 20 -0.956 A A 43 42 2.974 -0.592 0.048 -1.776 AA_C19A20:U42G43_AA 4 -4.034 6.512 35.939 -2.785 -0.597 3.905 36.965 A A 20 21 -17.725 A A 42 41 3.552 -11.057 0.367 -1.680 AA_A20G21:C41U42_AA 5 3.927 -6.296 35.116 -0.904 0.041 3.578 36.662 A A 21 22 -13.828 A A 41 40 3.267 -8.620 -0.498 -1.826 AA_G21A22:U40C41_AA 6 1.286 -2.064 35.646 -1.648 0.979 2.996 46.340 A A 22 26 -1.022 A A 40 39 2.756 -0.803 -2.250 -1.555 AA_A22G26:C39U40_AA 7 -5.001 6.366 46.077 -1.916 2.485 3.058 29.281 A A 26 27 -9.493 A A 39 38 2.772 -4.778 0.099 -2.035 AA_G26A27:U38C39_AA 8 -0.695 1.380 28.889 -3.099 -0.330 2.979 32.167 A A 27 28 -11.684 A A 38 37 2.731 -6.423 0.101 -1.652 AA_A27G28:C37U38_AA 9 -3.079 5.602 31.388 -1.966 -0.669 3.224 40.593 A A 28 29 -3.572 A A 37 36 3.125 -2.472 0.315 -1.508 AA_G28C29:G36C37_AA 10 4.288 -6.194 40.303 -1.905 0.011 database_2 pdbx_database_status pdbx_struct_assembly pdbx_struct_oper_list struct_site repository Initial release Version format compliance Version format compliance Database references Derived calculations Other 1 0 1997-11-19 1 1 2008-03-24 1 2 2011-07-13 1 3 2022-02-16 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_database_status.process_site _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id ENSEMBLE OF 20 STRUCTURES Y BNL 1997-05-27 REL REL ARG ARGININE LEAST RESTRAINTS AND LOWEST ENERGY 20 1 SEE PAPER 6.4 298 K RANDOM COORDINATES AND SIMULATED ANNEALING BRUNGER refinement X-PLOR 3.1 structure solution X-PLOR 3.1 500 Varian VXR500 591 Varian UNITYPLUS 750 HOME MADE HOME-MADE ARG 47 2 ARG ARG 47 A G 16 n 1 G 16 A G 17 n 2 G 17 A C 18 n 3 C 18 A C 19 n 4 C 19 A A 20 n 5 A 20 A G 21 n 6 G 21 A A 22 n 7 A 22 A U 23 n 8 U 23 A U 25 n 9 U 25 A G 26 n 10 G 26 A A 27 n 11 A 27 A G 28 n 12 G 28 A C 29 n 13 C 29 A C 30 n 14 C 30 A U 31 n 15 U 31 A G 32 n 16 G 32 A G 33 n 17 G 33 A G 34 n 18 G 34 A A 35 n 19 A 35 A G 36 n 20 G 36 A C 37 n 21 C 37 A U 38 n 22 U 38 A C 39 n 23 C 39 A U 40 n 24 U 40 A C 41 n 25 C 41 A U 42 n 26 U 42 A G 43 n 27 G 43 A G 44 n 28 G 44 A C 45 n 29 C 45 A C 46 n 30 C 46 A author_defined_assembly 1 monomeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 1 A OXT ARG 47 B OXT ARG 1 1 N 1 A ARG 47 0.209 SIDE CHAIN model building X-PLOR 3.1 refinement X-PLOR 3.1 phasing X-PLOR 3.1 HIV-2 TRANS ACTIVATING REGION RNA COMPLEX WITH ARGININAMIDE, NMR, MINIMIZED AVERAGE STRUCTURE 1 N N 2 N N hydrog WATSON-CRICK A G 16 A N1 G 1 1_555 A C 46 A N3 C 30 1_555 hydrog WATSON-CRICK A G 16 A N2 G 1 1_555 A C 46 A O2 C 30 1_555 hydrog WATSON-CRICK A G 16 A O6 G 1 1_555 A C 46 A N4 C 30 1_555 hydrog WATSON-CRICK A G 17 A N1 G 2 1_555 A C 45 A N3 C 29 1_555 hydrog WATSON-CRICK A G 17 A N2 G 2 1_555 A C 45 A O2 C 29 1_555 hydrog WATSON-CRICK A G 17 A O6 G 2 1_555 A C 45 A N4 C 29 1_555 hydrog WATSON-CRICK A C 18 A N3 C 3 1_555 A G 44 A N1 G 28 1_555 hydrog WATSON-CRICK A C 18 A N4 C 3 1_555 A G 44 A O6 G 28 1_555 hydrog WATSON-CRICK A C 18 A O2 C 3 1_555 A G 44 A N2 G 28 1_555 hydrog WATSON-CRICK A C 19 A N3 C 4 1_555 A G 43 A N1 G 27 1_555 hydrog WATSON-CRICK A C 19 A N4 C 4 1_555 A G 43 A O6 G 27 1_555 hydrog WATSON-CRICK A C 19 A O2 C 4 1_555 A G 43 A N2 G 27 1_555 hydrog WATSON-CRICK A A 20 A N1 A 5 1_555 A U 42 A N3 U 26 1_555 hydrog WATSON-CRICK A A 20 A N6 A 5 1_555 A U 42 A O4 U 26 1_555 hydrog WATSON-CRICK A G 21 A N1 G 6 1_555 A C 41 A N3 C 25 1_555 hydrog WATSON-CRICK A G 21 A N2 G 6 1_555 A C 41 A O2 C 25 1_555 hydrog WATSON-CRICK A G 21 A O6 G 6 1_555 A C 41 A N4 C 25 1_555 hydrog A-C MISPAIR A A 22 A N1 A 7 1_555 A C 39 A N4 C 23 1_555 hydrog WATSON-CRICK A A 22 A N1 A 7 1_555 A U 40 A N3 U 24 1_555 hydrog WATSON-CRICK A A 22 A N6 A 7 1_555 A U 40 A O4 U 24 1_555 hydrog WATSON-CRICK A G 26 A N1 G 10 1_555 A C 39 A N3 C 23 1_555 hydrog WATSON-CRICK A G 26 A N2 G 10 1_555 A C 39 A O2 C 23 1_555 hydrog WATSON-CRICK A G 26 A O6 G 10 1_555 A C 39 A N4 C 23 1_555 hydrog WATSON-CRICK A A 27 A N1 A 11 1_555 A U 38 A N3 U 22 1_555 hydrog WATSON-CRICK A A 27 A N6 A 11 1_555 A U 38 A O4 U 22 1_555 hydrog WATSON-CRICK A G 28 A N1 G 12 1_555 A C 37 A N3 C 21 1_555 hydrog WATSON-CRICK A G 28 A N2 G 12 1_555 A C 37 A O2 C 21 1_555 hydrog WATSON-CRICK A G 28 A O6 G 12 1_555 A C 37 A N4 C 21 1_555 hydrog WATSON-CRICK A C 29 A N3 C 13 1_555 A G 36 A N1 G 20 1_555 hydrog WATSON-CRICK A C 29 A N4 C 13 1_555 A G 36 A O6 G 20 1_555 hydrog WATSON-CRICK A C 29 A O2 C 13 1_555 A G 36 A N2 G 20 1_555 hydrog G-G MISPAIR A G 32 A N2 G 16 1_555 A G 33 A O6 G 17 1_555 RNA TRANSCRIPTIONAL ACTIVATION, COMPLEX (RNA-LIGAND), PROTEIN-RNA INTERACTIONS, RNA 1AKX PDB 1 1AKX 16 46 1AKX 16 46 1AKX A 1 1 30 BINDING SITE FOR RESIDUE ARG A 47 A ARG 47 Software 4 A A 22 A A 7 4 1_555 A U 23 A U 8 4 1_555 A G 26 A G 10 4 1_555 A C 37 A C 21 4 1_555 1 P 1