0.030832
0.000000
0.000000
0.000000
0.030806
0.000000
0.000000
0.000000
0.041411
0.00000
0.00000
0.00000
Burkhart, B.M.
Gassman, R.M.
Pangborn, W.A.
Duax, W.L.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.00
90.00
90.00
32.434
32.461
24.148
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H13 N O2
131.173
D-LEUCINE
D-peptide linking
C5 H11 N O2
117.146
D-VALINE
D-peptide linking
C2 H7 N O
61.083
ETHANOLAMINE
L-peptide COOH carboxy terminus
C6 H11 N O3
145.156
n
N-formyl-L-valine
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C3 H8 O
60.095
N-PROPANOL
1-PROPONOL
non-polymer
C7 H13 N O3
159.183
n
N-formyl-L-isoleucine
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
R
C
N
16
N
C
N
17
N
C
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
O
N
22
N
O
N
23
N
H
N
24
N
H
N
25
N
H
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
N
N
37
R
C
N
38
N
C
N
39
N
C
N
40
N
C
N
41
N
C
N
42
N
O
N
43
N
O
N
44
N
H
N
45
N
H
N
46
N
H
N
47
N
H
N
48
N
H
N
49
N
H
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
C
N
56
N
N
N
57
N
C
N
58
N
O
N
59
N
H
N
60
N
H
N
61
N
H
N
62
N
H
N
63
N
H
N
64
N
H
N
65
N
H
N
66
N
C
N
67
N
N
N
68
N
O
N
69
S
C
N
70
N
C
N
71
N
C
N
72
N
C
N
73
N
H
N
74
N
H
N
75
N
H
N
76
N
H
N
77
N
H
N
78
N
H
N
79
N
H
N
80
N
H
N
81
N
H
N
82
N
O
N
83
N
C
N
84
N
H
N
85
N
O
N
86
N
H
N
87
N
N
N
88
N
C
N
89
N
C
N
90
N
O
N
91
N
O
N
92
N
H
N
93
N
H
N
94
N
H
N
95
N
H
N
96
N
H
N
97
N
O
N
98
N
C
N
99
N
C
N
100
N
C
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
C
N
110
N
N
N
111
N
O
N
112
S
C
N
113
S
C
N
114
N
C
N
115
N
C
N
116
N
C
N
117
N
C
N
118
N
O
N
119
N
O
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
H
N
128
N
H
N
129
N
H
N
130
N
H
N
131
N
H
N
132
N
H
N
133
N
N
N
134
S
C
N
135
N
C
N
136
N
O
N
137
N
C
Y
138
N
C
Y
139
N
C
Y
140
N
C
Y
141
N
N
Y
142
N
C
Y
143
N
C
Y
144
N
C
Y
145
N
C
Y
146
N
C
N
147
N
O
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
H
N
159
N
H
N
160
N
N
N
161
S
C
N
162
N
C
N
163
N
O
N
164
N
C
N
165
N
C
N
166
N
C
N
167
N
O
N
168
N
H
N
169
N
H
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
sing
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
doub
N
32
N
sing
N
33
N
sing
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
sing
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
doub
N
50
N
sing
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
sing
N
62
N
doub
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
sing
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
sing
N
77
N
sing
N
78
N
doub
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
doub
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
doub
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
doub
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
doub
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
Y
136
N
doub
Y
137
N
sing
Y
138
N
sing
N
139
N
sing
Y
140
N
doub
Y
141
N
sing
Y
142
N
sing
N
143
N
sing
Y
144
N
sing
Y
145
N
doub
N
146
N
sing
Y
147
N
doub
N
148
N
sing
Y
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
doub
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
US
Biophys.J.
BIOJAU
0030
0006-3495
75
2135
10.1016/S0006-3495(98)77656-8
9788907
Heterodimer Formation and Crystal Nucleation of Gramicidin D
1998
10.2210/pdb1al4/pdb
pdb_00001al4
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
120
1
COLLIMATOR
IMAGE PLATE
1996-09
RIGAKU RAXIS II
GRAPHITE(002)
M
x-ray
1
1.5418
1.0
1.5418
ROTATING ANODE
RIGAKU RUH2R
1882.294
GRAMICIDIN D
2
nat
polymer
60.095
N-PROPANOL
10
syn
non-polymer
no
yes
(FVA)GA(DLE)A(DVA)V(DVA)W(DLE)W(DLE)W(DLE)W(ETA)
VGALAVVVWLWLWLWX
A,B
polypeptide(L)
y
y
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
sample
1393
BREVIBACILLUS BREVIS
1
1.69
27.15
ISOMORPHOUS TO 1ALZ
7.0
CRYSTALLIZED BY BATCH METHODS FROM A SATURATED SOLUTION OF GRAMICIDIN D IN N-PROPANOL, PH 7.0, BATCH METHOD
database_2
pdbx_database_status
pdbx_initial_refinement_model
struct_conn
struct_ref_seq_dif
struct_site
atom_site
atom_site_anisotrop
chem_comp_atom
chem_comp_bond
struct_conn
repository
Initial release
Version format compliance
Version format compliance
Atomic model
Database references
Derived calculations
Non-polymer description
Structure summary
Other
Database references
Derived calculations
Other
Refinement description
Atomic model
Data collection
Derived calculations
1
0
1998-03-04
1
1
2011-06-14
1
2
2011-07-13
1
3
2011-07-27
1
4
2012-12-12
1
5
2023-08-02
2
0
2023-11-15
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_database_status.process_site
_struct_conn.pdbx_leaving_atom_flag
_struct_ref_seq_dif.details
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
_atom_site.auth_atom_id
_atom_site.label_atom_id
_atom_site_anisotrop.pdbx_auth_atom_id
_atom_site_anisotrop.pdbx_label_atom_id
_struct_conn.pdbx_leaving_atom_flag
CRYSTAL STRUCTURE OF GRAMICIDIN S COMPLEXED WITH ALKALINE PROTEINASE SAVINASE
CRYSTAL STRUCTURE OF GRAMICIDIN A FROM CRYSTALS GROWN IN A LIPID CUBIC PHASE.
CRYSTAL STRUCTURE OF GRAMICIDIN A COMPLEXED WITH CESIUM CHLORIDE
CRYSTAL STRUCTURE OF GRAMICIDIN A FROM BACILLUS BREVIS
CRYSTAL STRUCTURE OF GRAMICIDIN A COMPLEXED WITH CESIUM CHLORIDE
CRYSTAL STRUCTURE OF GRAMICIDIN A COMPLRXED WITH POTASSIUM THIOCYANATE
SOLUTION STRUCTURE OF THE GRAMICIDIN A
SOLUTION STRUCTURE OF GRAMICIDIN A IN SODIUM DODECYL SULFATE MICELLES
SOLUTION STRUCTURE OF A LINKED SHORTENED GRAMICIDIN A IN BENZENE/ACETONE 10:1
SOLID STATE NMR STRUCTURE OF GRAMICIDIN A IN HYDRATED DMPC BILAYERS,
SOLUTION STRUCTURE OF GRAMICIDIN A IN METHANOL IN THE PRESENCE OF CACL
SOLUTION STRUCTURE OF GRAMICIDIN A (W15G) IN SODIUM DODECYL SULFATE MICELLES
SOLUTION STRUCTURE OF GRAMICIDIN A IN DODECYL PHOSPHOCHOLINE MICELLES
SOLUTION STRUCTURE OF GRAMICIDIN A IN DODECYL PHOSPHOCHOLINE MICELLES IN THE PRESENCE OF EXCESS NA+
SOLUTION STRUCTURE OF GRAMICIDIN A (V1F) IN SODIUM DODECYL SULFATE MICELLES
SOLUTION STRUCTURE OF GRAMICIDIN B IN SODIUM DODECYL SULFATE MICELLES
SOLUTION STRUCTURE OF GRAMICIDIN C IN SODIUM DODECYL SULFATE MICELLES
SOLUTION STRUCTURE OF F1-GRAMICIDIN C IN SODIUM DODECYL SULFATE MICELLES
SOLUTION STRUCTURE OF A LINKED UNSYMMETRIC GRAMICIDIN A IN A MEMBRANE-ISOELECTRICAL SOLVENTS MIXTURE, IN THE PRESENCE OF CSCL
CRYSTAL STRUCTURE OF GRAMICIDIN D IN ETHANOL
CRYSTAL STRUCTURE OF GRAMICIDIN D COMPLEX WITH KI IN METHANOL
CRYSTAL STRUCTURE OF GRAMICIDIN D COMPLEX WITH NAI
CRYSTAL STRUCTURE OF GRAMICIDIN D IN METHANOL
CRYSTAL STRUCTURE OF GRAMICIDIN D IN ETHANOL
Y
BNL
1997-06-11
REL
REL
POL
N-PROPANOL
GRAMICIDIN IS A HETEROGENEOUS MIXTURE OF SEVERAL COMPOUNDS
INCLUDING GRAMICIDIN A, B AND C WHICH ARE OBTAINED FROM
BACILLUS BREVIS AND CALLED COLLECTIVELY GRAMICIDIN D.
HERE, GRAMICIDIN D IS REPRESENTED BY THE SEQUENCE (SEQRES)
1ALZ
PDB ENTRY 1ALZ
PDB
experimental model
Antibiotic
GRAMICIDIN D IS A HEXADECAMERIC HELICAL PEPTIDE
WITH ALTERNATING D,L CHARACTERISTICS.
THE N-TERM IS FORMYLATED (RESIDUE 1).
THE C-TERM IS CAPPED WITH ETHANOLAMINE (RESIDUE 16).
GRAMICIDIN D
Polypeptide
POL
502
2
POL
POL
502
A
POL
503
2
POL
POL
503
A
POL
506
2
POL
POL
506
A
POL
507
2
POL
POL
507
A
POL
508
2
POL
POL
508
A
POL
509
2
POL
POL
509
A
POL
501
2
POL
POL
501
B
POL
504
2
POL
POL
504
B
POL
505
2
POL
POL
505
B
POL
510
2
POL
POL
510
B
FVA
1
y
1
FVA
1
A
QIL
1
y
1
QIL
1
A
GLY
2
n
2
GLY
2
A
ALA
3
n
3
ALA
3
A
DLE
4
n
4
DLE
4
A
ALA
5
n
5
ALA
5
A
DVA
6
n
6
DVA
6
A
VAL
7
n
7
VAL
7
A
DVA
8
n
8
DVA
8
A
TRP
9
n
9
TRP
9
A
DLE
10
n
10
DLE
10
A
TRP
11
n
11
TRP
11
A
DLE
12
n
12
DLE
12
A
TRP
13
n
13
TRP
13
A
DLE
14
n
14
DLE
14
A
TRP
15
n
15
TRP
15
A
ETA
16
n
16
ETA
16
A
FVA
1
y
1
FVA
1
B
QIL
1
y
1
QIL
1
B
GLY
2
n
2
GLY
2
B
ALA
3
n
3
ALA
3
B
DLE
4
n
4
DLE
4
B
ALA
5
n
5
ALA
5
B
DVA
6
n
6
DVA
6
B
VAL
7
n
7
VAL
7
B
DVA
8
n
8
DVA
8
B
TRP
9
n
9
TRP
9
B
DLE
10
n
10
DLE
10
B
TRP
11
n
11
TRP
11
B
DLE
12
n
12
DLE
12
B
TRP
13
n
13
TRP
13
B
DLE
14
n
14
DLE
14
B
TRP
15
n
15
TRP
15
B
ETA
16
n
16
ETA
16
B
0.086
0.087
0.084
0.085
0.120
0.121
545
563
5.000
5.000
9165
author_and_software_defined_assembly
PISA
2
dimeric
2690
-5.0
4840
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
TRP
13
A
N
TRP
13
B
O
ALA
3
B
O
ALA
3
1
A
A
HE1
HO
TRP
POL
15
502
1.10
B
1
B
B
H
H12
DLE
POL
4
504
1.28
A
1
A
A
HE1
HO
TRP
POL
9
507
1.31
B
1
A
ALA
5
-160.27
86.90
1
A
TRP
9
-160.82
106.14
1
A
TRP
13
-157.75
86.25
1
A
TRP
15
-157.44
64.13
1
A
TRP
15
-157.44
77.52
1
B
TRP
13
-161.14
88.62
0.121
0.087
0.085
1.13
100.00
3746
563
9571
7423
5.000
95.5
5% OF REFLECTIONS IN THIN RESOLUTION SHELLS.
1
FREE R-VALUE
0.000
MOLECULAR PLACEMENT; DIFFERENCE MAPS
PDB ENTRY 1ALZ
MODIFIED ENGH AND HUBER FOR ETHANOLAMINE BASED ON SERINE
ENGH AND HUBER
MOEWS & KRETSINGER (G = 0.5373 U = 0.7755)
8
369.47
316.72
1.13
100.00
0
332
40
0
292
0.016
0.033
0.411
0.166
0.105
0.005
0.028
0.029
1.130
100.000
1AL4
67561
-3.000
0.04100
0.04100
1
47.6000
7.000
95.5
0.06500
1.13
1.16
13.700
0.06500
1
2.30
82.4
model building
SHELXL-97
refinement
SHELXL-97
data reduction
DENZO
data scaling
SCALEPACK
phasing
SHELXL-97
GRAMICIDIN D FROM BACILLUS BREVIS (N-PROPANOL SOLVATE)
1
N
N
1
N
N
2
N
N
2
N
N
2
N
N
2
N
N
2
N
N
2
N
N
2
N
N
2
N
N
2
N
N
2
N
N
covale
1.305
both
A
A
FVA
1
A
C
FVA
1
1_555
A
GLY
2
A
N
GLY
2
1_555
covale
1.305
both
B
A
QIL
1
A
C
QIL
1
1_555
A
GLY
2
A
N
GLY
2
1_555
covale
1.316
both
A
ALA
3
A
C
ALA
3
1_555
A
DLE
4
A
N
DLE
4
1_555
covale
1.316
both
A
DLE
4
A
C
DLE
4
1_555
A
ALA
5
A
N
ALA
5
1_555
covale
1.329
both
A
ALA
5
A
C
ALA
5
1_555
A
DVA
6
A
N
DVA
6
1_555
covale
1.339
both
A
DVA
6
A
C
DVA
6
1_555
A
VAL
7
A
N
VAL
7
1_555
covale
1.312
both
A
VAL
7
A
C
VAL
7
1_555
A
DVA
8
A
N
DVA
8
1_555
covale
1.331
both
A
DVA
8
A
C
DVA
8
1_555
A
TRP
9
A
N
TRP
9
1_555
covale
1.323
both
A
TRP
9
A
C
TRP
9
1_555
A
DLE
10
A
N
DLE
10
1_555
covale
1.337
both
A
DLE
10
A
C
DLE
10
1_555
A
TRP
11
A
N
TRP
11
1_555
covale
1.327
both
A
TRP
11
A
C
TRP
11
1_555
A
DLE
12
A
N
DLE
12
1_555
covale
1.340
both
A
DLE
12
A
C
DLE
12
1_555
A
TRP
13
A
N
TRP
13
1_555
covale
1.346
both
A
TRP
13
A
C
TRP
13
1_555
A
DLE
14
A
N
DLE
14
1_555
covale
1.317
both
A
DLE
14
A
C
DLE
14
1_555
A
TRP
15
A
N
TRP
15
1_555
covale
1.357
both
B
A
TRP
15
A
C
TRP
15
1_555
A
ETA
16
A
N
ETA
16
1_555
covale
1.324
both
C
A
TRP
15
A
C
TRP
15
1_555
A
ETA
16
A
N
ETA
16
1_555
covale
1.331
both
A
A
TRP
15
A
C
TRP
15
1_555
A
ETA
16
A
N
ETA
16
1_555
covale
1.341
both
A
B
FVA
1
B
C
FVA
1
1_555
B
GLY
2
B
N
GLY
2
1_555
covale
1.341
both
B
B
QIL
1
B
C
QIL
1
1_555
B
GLY
2
B
N
GLY
2
1_555
covale
1.308
both
B
ALA
3
B
C
ALA
3
1_555
B
DLE
4
B
N
DLE
4
1_555
covale
1.332
both
B
DLE
4
B
C
DLE
4
1_555
B
ALA
5
B
N
ALA
5
1_555
covale
1.312
both
B
ALA
5
B
C
ALA
5
1_555
B
DVA
6
B
N
DVA
6
1_555
covale
1.353
both
B
DVA
6
B
C
DVA
6
1_555
B
VAL
7
B
N
VAL
7
1_555
covale
1.318
both
B
VAL
7
B
C
VAL
7
1_555
B
DVA
8
B
N
DVA
8
1_555
covale
1.348
both
B
DVA
8
B
C
DVA
8
1_555
B
TRP
9
B
N
TRP
9
1_555
covale
1.331
both
B
TRP
9
B
C
TRP
9
1_555
B
DLE
10
B
N
DLE
10
1_555
covale
1.332
both
B
B
DLE
10
B
C
DLE
10
1_555
B
TRP
11
B
N
TRP
11
1_555
covale
1.327
both
A
B
DLE
10
B
C
DLE
10
1_555
B
TRP
11
B
N
TRP
11
1_555
covale
1.317
both
B
B
TRP
11
B
C
TRP
11
1_555
B
DLE
12
B
N
DLE
12
1_555
covale
1.328
both
A
B
TRP
11
B
C
TRP
11
1_555
B
DLE
12
B
N
DLE
12
1_555
covale
1.319
both
B
DLE
12
B
C
DLE
12
1_555
B
TRP
13
B
N
TRP
13
1_555
covale
1.319
both
B
TRP
13
B
C
TRP
13
1_555
B
DLE
14
B
N
DLE
14
1_555
covale
1.320
both
B
DLE
14
B
C
DLE
14
1_555
B
TRP
15
B
N
TRP
15
1_555
covale
1.307
both
B
TRP
15
B
C
TRP
15
1_555
B
ETA
16
B
N
ETA
16
1_555
ANTIBIOTIC
ANTIBIOTIC, ANTIFUNGAL, ANTIBACTERIAL, LINEAR GRAMICIDIN, MEMBRANE ION CHANNEL
given
0.847240
0.150640
0.509400
0.151640
-0.987630
0.039850
0.509100
0.043480
-0.859610
-8.19000
65.16000
10.19000
NOR00243
NOR
1
NOR00243
1
16
1AL4
1
16
NOR00243
A
1
1
16
1
16
1AL4
1
16
NOR00243
B
1
1
16
1
FVA
microheterogeneity
QIL
1
1AL4
A
NOR00243
NOR
1
1
2
FVA
microheterogeneity
QIL
1
1AL4
B
NOR00243
NOR
1
1
2
anti-parallel
A
GLY
2
A
GLY
2
A
DLE
14
A
DLE
14
B
GLY
2
B
GLY
2
B
DLE
14
B
DLE
14
BINDING SITE FOR RESIDUE POL A 502
A
POL
502
Software
8
BINDING SITE FOR RESIDUE POL A 503
A
POL
503
Software
7
BINDING SITE FOR RESIDUE POL A 506
A
POL
506
Software
10
BINDING SITE FOR RESIDUE POL A 507
A
POL
507
Software
5
BINDING SITE FOR RESIDUE POL A 508
A
POL
508
Software
5
BINDING SITE FOR RESIDUE POL A 509
A
POL
509
Software
4
BINDING SITE FOR RESIDUE POL B 501
B
POL
501
Software
6
BINDING SITE FOR RESIDUE POL B 504
B
POL
504
Software
5
BINDING SITE FOR RESIDUE POL B 505
B
POL
505
Software
8
BINDING SITE FOR RESIDUE POL B 510
B
POL
510
Software
5
BINDING SITE FOR CHAIN A OF GRAMICIDIN D
Software
45
BINDING SITE FOR CHAIN B OF GRAMICIDIN D
Software
43
A
VAL
7
A
VAL
7
8
4_476
A
DVA
8
A
DVA
8
8
3_656
A
TRP
9
A
TRP
9
8
3_656
A
TRP
15
A
TRP
15
8
1_555
A
POL
506
E
POL
8
1_565
B
DVA
8
B
DVA
8
8
4_476
B
DLE
12
B
DLE
12
8
3_656
B
POL
501
I
POL
8
1_555
A
TRP
9
A
TRP
9
7
4_566
A
DLE
10
A
DLE
10
7
4_566
A
TRP
13
A
TRP
13
7
1_545
A
POL
507
F
POL
7
4_566
A
POL
508
G
POL
7
1_555
A
POL
509
H
POL
7
1_555
B
GLY
2
B
GLY
2
7
1_545
A
DLE
4
A
DLE
4
10
1_555
A
TRP
9
A
TRP
9
10
3_646
A
TRP
15
A
TRP
15
10
1_545
A
ETA
16
A
ETA
16
10
1_545
A
POL
502
C
POL
10
1_545
B
TRP
13
B
TRP
13
10
4_466
B
DLE
14
B
DLE
14
10
4_466
B
ETA
16
B
ETA
16
10
1_555
B
POL
501
I
POL
10
1_545
B
POL
505
K
POL
10
4_466
A
DLE
4
A
DLE
4
5
3_656
A
TRP
9
A
TRP
9
5
1_555
A
DLE
10
A
DLE
10
5
1_555
A
TRP
13
A
TRP
13
5
4_476
A
POL
503
D
POL
5
4_466
A
GLY
2
A
GLY
2
5
1_555
A
TRP
9
A
TRP
9
5
4_566
A
POL
503
D
POL
5
1_555
A
POL
509
H
POL
5
1_555
B
TRP
11
B
TRP
11
5
4_566
A
GLY
2
A
GLY
2
4
1_555
A
POL
503
D
POL
4
1_555
A
POL
508
G
POL
4
1_555
B
GLY
2
B
GLY
2
4
1_545
A
ETA
16
A
ETA
16
6
1_555
A
POL
502
C
POL
6
1_555
A
POL
506
E
POL
6
1_565
B
DLE
4
B
DLE
4
6
1_555
B
TRP
13
B
TRP
13
6
4_476
B
POL
510
L
POL
6
3_655
A
ETA
16
A
ETA
16
5
1_555
B
ALA
3
B
ALA
3
5
1_555
B
DLE
4
B
DLE
4
5
1_555
B
TRP
15
B
TRP
15
5
1_565
B
POL
510
L
POL
5
3_655
A
DLE
4
A
DLE
4
8
4_566
A
ALA
5
A
ALA
5
8
4_566
A
TRP
11
A
TRP
11
8
2_675
A
ETA
16
A
ETA
16
8
4_576
A
POL
506
E
POL
8
4_566
B
TRP
9
B
TRP
9
8
2_675
B
TRP
13
B
TRP
13
8
1_555
B
TRP
15
B
TRP
15
8
4_566
A
ETA
16
A
ETA
16
5
3_645
B
TRP
9
B
TRP
9
5
1_555
B
TRP
13
B
TRP
13
5
2_674
B
POL
501
I
POL
5
3_645
B
POL
504
J
POL
5
3_645
A
POL
502
C
POL
45
4_576
A
POL
502
C
POL
45
3_646
A
POL
502
C
POL
45
1_555
A
POL
503
D
POL
45
4_466
A
POL
503
D
POL
45
1_565
A
POL
503
D
POL
45
1_555
A
POL
506
E
POL
45
1_555
A
POL
506
E
POL
45
3_656
A
POL
506
E
POL
45
1_565
A
POL
507
F
POL
45
3_646
A
POL
507
F
POL
45
1_555
A
POL
507
F
POL
45
4_576
A
POL
508
G
POL
45
4_466
A
POL
508
G
POL
45
1_555
A
POL
509
H
POL
45
1_555
B
GLY
2
B
GLY
2
45
1_545
B
GLY
2
B
GLY
2
45
1_555
B
ALA
3
B
ALA
3
45
1_555
B
ALA
3
B
ALA
3
45
1_545
B
DLE
4
B
DLE
4
45
1_555
B
ALA
5
B
ALA
5
45
4_576
B
ALA
5
B
ALA
5
45
1_555
B
DVA
6
B
DVA
6
45
1_555
B
VAL
7
B
VAL
7
45
1_555
B
DVA
8
B
DVA
8
45
1_555
B
TRP
9
B
TRP
9
45
1_555
B
DLE
10
B
DLE
10
45
1_555
B
TRP
11
B
TRP
11
45
1_555
B
TRP
11
B
TRP
11
45
3_656
B
TRP
11
B
TRP
11
45
4_566
B
DLE
12
B
DLE
12
45
1_555
B
TRP
13
B
TRP
13
45
1_555
B
TRP
13
B
TRP
13
45
4_476
B
DLE
14
B
DLE
14
45
1_555
B
TRP
15
B
TRP
15
45
2_675
B
TRP
15
B
TRP
15
45
3_655
B
TRP
15
B
TRP
15
45
1_555
B
ETA
16
B
ETA
16
45
1_565
B
ETA
16
B
ETA
16
45
1_555
B
POL
501
I
POL
45
1_555
B
POL
504
J
POL
45
1_555
B
POL
505
K
POL
45
4_476
B
POL
505
K
POL
45
2_674
B
POL
505
K
POL
45
4_466
B
POL
510
L
POL
45
3_655
A
GLY
2
A
GLY
2
43
1_555
A
GLY
2
A
GLY
2
43
1_565
A
ALA
3
A
ALA
3
43
1_565
A
ALA
3
A
ALA
3
43
1_555
A
DLE
4
A
DLE
4
43
1_555
A
ALA
5
A
ALA
5
43
1_555
A
DVA
6
A
DVA
6
43
1_555
A
VAL
7
A
VAL
7
43
1_555
A
DVA
8
A
DVA
8
43
1_555
A
TRP
9
A
TRP
9
43
1_555
A
DLE
10
A
DLE
10
43
1_555
A
TRP
11
A
TRP
11
43
1_555
A
TRP
11
A
TRP
11
43
3_645
A
DLE
12
A
DLE
12
43
1_555
A
TRP
13
A
TRP
13
43
4_476
A
TRP
13
A
TRP
13
43
1_555
A
TRP
13
A
TRP
13
43
2_674
A
DLE
14
A
DLE
14
43
2_674
A
DLE
14
A
DLE
14
43
1_555
A
TRP
15
A
TRP
15
43
1_555
A
TRP
15
A
TRP
15
43
3_646
A
ETA
16
A
ETA
16
43
1_555
A
ETA
16
A
ETA
16
43
4_576
A
ETA
16
A
ETA
16
43
1_545
A
POL
502
C
POL
43
3_646
A
POL
502
C
POL
43
4_576
A
POL
503
D
POL
43
1_565
A
POL
503
D
POL
43
2_675
A
POL
506
E
POL
43
1_565
A
POL
506
E
POL
43
4_566
A
POL
506
E
POL
43
1_555
A
POL
507
F
POL
43
3_656
A
POL
508
G
POL
43
4_466
A
POL
509
H
POL
43
1_565
B
POL
501
I
POL
43
4_576
B
POL
501
I
POL
43
1_555
B
POL
504
J
POL
43
1_545
B
POL
504
J
POL
43
1_555
B
POL
505
K
POL
43
1_555
B
POL
505
K
POL
43
4_466
B
POL
505
K
POL
43
2_674
B
POL
510
L
POL
43
2_675
B
POL
510
L
POL
43
1_555
19
P 21 21 21