1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 Conte, M.R. Conn, G.L. Brown, T. Lane, A.N. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 1 90.00 90.00 90.00 1.000 1.000 1.000 C10 H14 N5 O7 P 347.221 y ADENOSINE-5'-MONOPHOSPHATE RNA linking C9 H14 N3 O8 P 323.197 y CYTIDINE-5'-MONOPHOSPHATE RNA linking C10 H14 N5 O8 P 363.221 y GUANOSINE-5'-MONOPHOSPHATE RNA linking C9 H13 N2 O9 P 324.181 y URIDINE-5'-MONOPHOSPHATE RNA linking UK Nucleic Acids Res. NARHAD 0389 0305-1048 25 2627 2634 10.1093/nar/25.13.2627 9185574 Conformational properties and thermodynamics of the RNA duplex r(CGCAAAUUUGCG)2: comparison with the DNA analogue d(CGCAAATTTGCG)2. 1997 UK Nucleic Acids Res. NARHAD 0389 0305-1048 24 3693 Hydration of the RNA Duplex R(Cgcaaauuugcg)2 Determined by NMR 1996 10.2210/pdb1al5/pdb pdb_00001al5 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 3812.320 RNA (5'-R(*CP*GP*CP*AP*AP*AP*UP*UP*UP*GP*CP*G)-3') 2 syn polymer A-TRACT RNA no no CGCAAAUUUGCG CGCAAAUUUGCG A,B polyribonucleotide n n n n n n n n n n n n 9.123 1 19 A 1 B 12 -1.331 A_C1:G12_B 1 -26.547 0.101 0.040 -0.078 1.243 1 19 A 2 B 11 -1.092 A_G2:C11_B 2 -22.633 -0.400 0.122 -0.149 3.003 1 19 A 3 B 10 -0.087 A_C3:G10_B 3 -24.008 0.310 -0.006 -0.111 -3.374 1 20 A 4 B 9 -2.059 A_A4:U9_B 4 -13.777 0.221 0.240 -0.012 -0.761 1 20 A 5 B 8 -5.018 A_A5:U8_B 5 -16.335 0.300 0.340 -0.016 1.294 1 20 A 6 B 7 -4.998 A_A6:U7_B 6 -23.618 0.243 0.332 -0.027 0.141 1 20 A 7 B 6 -5.196 A_U7:A6_B 7 -26.807 0.083 0.278 -0.082 2.909 1 20 A 8 B 5 -3.792 A_U8:A5_B 8 -18.841 -0.178 0.351 -0.033 11.190 1 20 A 9 B 4 -3.025 A_U9:A4_B 9 -21.191 -0.146 -0.061 -0.009 1.713 1 19 A 10 B 3 -0.255 A_G10:C3_B 10 -23.182 -0.424 0.049 -0.149 7.140 1 19 A 11 B 2 -0.332 A_C11:G2_B 11 -24.800 0.114 -0.090 -0.072 -7.946 1 19 A 12 B 1 0.364 A_G12:C1_B 12 -27.217 -0.296 -0.059 -0.109 1.572 36.399 A A 1 2 35.839 B B 12 11 3.113 21.065 0.059 -1.747 AA_C1G2:C11G12_BB 1 -1.733 2.948 29.804 -5.123 -0.287 2.986 35.300 A A 2 3 3.474 B B 11 10 3.078 2.105 0.196 -1.598 AA_G2C3:G10C11_BB 2 1.426 -2.353 35.212 -2.924 -0.128 2.120 33.067 A A 3 4 24.729 B B 10 9 3.157 13.673 0.093 -1.895 AA_C3A4:U9G10_BB 3 -0.762 1.379 30.170 -5.285 -0.273 3.029 31.637 A A 4 5 0.428 B B 9 8 3.041 0.233 0.128 -1.998 AA_A4A5:U8U9_BB 4 1.641 -3.012 31.595 -3.705 0.047 2.777 29.178 A A 5 6 6.998 B B 8 7 3.057 3.517 -0.201 -2.200 AA_A5A6:U7U8_BB 5 -0.135 0.268 28.969 -5.053 0.373 3.143 32.180 A A 6 7 -0.637 B B 7 6 3.122 -0.353 -0.126 -1.978 AA_A6U7:A6U7_BB 6 -0.077 0.139 32.178 -3.508 0.213 2.830 30.662 A A 7 8 6.756 B B 6 5 3.057 3.564 -0.018 -1.816 AA_U7U8:A5A6_BB 7 -1.201 2.276 30.436 -4.067 -0.180 2.852 31.414 A A 8 9 2.224 B B 5 4 2.913 1.204 -0.089 -1.397 AA_U8U9:A4A5_BB 8 1.410 -2.605 31.361 -2.780 0.398 1.913 35.399 A A 9 10 32.181 B B 4 3 3.236 18.621 0.126 -1.646 AA_U9G10:C3A4_BB 9 -2.476 4.279 30.140 -5.053 -0.520 2.966 34.056 A A 10 11 2.272 B B 3 2 3.024 1.330 -0.108 -1.496 AA_G10C11:G2C3_BB 10 -0.184 0.315 34.031 -2.748 0.157 1.529 37.255 A A 11 12 39.800 B B 2 1 3.317 23.594 -0.006 -1.734 AA_C11G12:C1G2_BB 11 -0.752 1.268 29.030 -5.348 -0.075 ndb_struct_na_base_pair pdbx_database_status pdbx_entity_src_syn pdbx_nmr_software pdbx_nmr_spectrometer pdbx_struct_assembly pdbx_struct_assembly_prop pdbx_struct_oper_list database_2 pdbx_nmr_software pdbx_nmr_spectrometer repository Initial release Version format compliance Version format compliance Data collection Derived calculations Other Source and taxonomy Data collection Database references 1 0 1997-12-17 1 1 2008-03-24 1 2 2011-07-13 1 3 2018-03-14 1 4 2021-11-03 _ndb_struct_na_base_pair.opening _pdbx_database_status.process_site _pdbx_nmr_software.authors _pdbx_nmr_spectrometer.field_strength _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_nmr_software.authors _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_spectrometer.manufacturer _pdbx_nmr_spectrometer.model Y BNL 1997-06-11 REL REL 32630 synthetic construct sample MINIMAL RESTRAINT VIOLATIONS, LOW ENERGY, GOOD STEREOCHEMISTRY 40 12 NOESY DQF-COSY H-INADEQUATE 31P 7 303 K SEE REFERENCES FOR DETAILS. DIRECT REFINEMENT AND RMD BIOSYM refinement Discover BIOSYM structure calculation Discover Lane structure calculation NUCFIT 400 Bruker AM 500 Varian UNITYPLUS 600 Varian UNITY C 1 n 1 C 1 A G 2 n 2 G 2 A C 3 n 3 C 3 A A 4 n 4 A 4 A A 5 n 5 A 5 A A 6 n 6 A 6 A U 7 n 7 U 7 A U 8 n 8 U 8 A U 9 n 9 U 9 A G 10 n 10 G 10 A C 11 n 11 C 11 A G 12 n 12 G 12 A C 1 n 1 C 1 B G 2 n 2 G 2 B C 3 n 3 C 3 B A 4 n 4 A 4 B A 5 n 5 A 5 B A 6 n 6 A 6 B U 7 n 7 U 7 B U 8 n 8 U 8 B U 9 n 9 U 9 B G 10 n 10 G 10 B C 11 n 11 C 11 B G 12 n 12 G 12 B author_defined_assembly 2 dimeric 1170 -3 4610 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 identity operation 0.0000000000 0.0000000000 0.0000000000 1 A U 8 0.083 SIDE CHAIN 1 A G 10 0.071 SIDE CHAIN 1 B G 10 0.074 SIDE CHAIN 2 A G 2 0.066 SIDE CHAIN 2 A A 6 0.063 SIDE CHAIN 2 A G 10 0.072 SIDE CHAIN 2 B G 2 0.077 SIDE CHAIN 2 B G 10 0.101 SIDE CHAIN 3 A G 10 0.074 SIDE CHAIN 3 B G 2 0.075 SIDE CHAIN 3 B G 10 0.084 SIDE CHAIN 4 A G 2 0.074 SIDE CHAIN 4 A G 10 0.088 SIDE CHAIN 4 B G 10 0.087 SIDE CHAIN 5 A G 2 0.076 SIDE CHAIN 5 A G 10 0.084 SIDE CHAIN 5 B G 2 0.076 SIDE CHAIN 5 B G 10 0.082 SIDE CHAIN 6 A A 4 0.062 SIDE CHAIN 6 A G 10 0.069 SIDE CHAIN 6 B G 10 0.079 SIDE CHAIN 7 A G 10 0.061 SIDE CHAIN 7 B G 2 0.069 SIDE CHAIN 7 B G 10 0.077 SIDE CHAIN 8 A G 10 0.061 SIDE CHAIN 8 B G 2 0.069 SIDE CHAIN 8 B G 10 0.077 SIDE CHAIN 9 A G 2 0.069 SIDE CHAIN 9 A G 10 0.084 SIDE CHAIN 9 B G 2 0.071 SIDE CHAIN 9 B U 9 0.066 SIDE CHAIN 9 B G 10 0.078 SIDE CHAIN 10 A G 10 0.086 SIDE CHAIN 10 B G 2 0.069 SIDE CHAIN 10 B G 10 0.079 SIDE CHAIN 11 A G 2 0.071 SIDE CHAIN 11 A G 10 0.083 SIDE CHAIN 11 B G 2 0.067 SIDE CHAIN 11 B A 4 0.060 SIDE CHAIN 11 B G 10 0.076 SIDE CHAIN 12 A G 2 0.075 SIDE CHAIN 12 A G 10 0.084 SIDE CHAIN 12 B G 10 0.066 SIDE CHAIN 1 4.42 0.70 108.50 112.92 A A A O4' C1' N1 C C C 3 3 3 N 1 4.91 0.70 108.50 113.41 A A A O4' C1' N1 U U U 7 7 7 N 1 4.59 0.70 108.50 113.09 A A A O4' C1' N1 U U U 8 8 8 N 1 4.21 0.70 108.50 112.71 A A A O4' C1' N1 U U U 9 9 9 N 1 4.66 0.70 108.50 113.16 B B B O4' C1' N1 C C C 3 3 3 N 1 4.34 0.70 108.50 112.84 B B B O4' C1' N1 U U U 7 7 7 N 1 4.50 0.70 108.50 113.00 B B B O4' C1' N1 U U U 9 9 9 N 1 4.37 0.70 108.50 112.87 B B B O4' C1' N1 C C C 11 11 11 N 2 4.90 0.70 108.50 113.40 A A A O4' C1' N1 C C C 3 3 3 N 2 4.73 0.70 108.50 113.23 A A A O4' C1' N1 U U U 7 7 7 N 2 4.87 0.70 108.50 113.37 A A A O4' C1' N1 U U U 8 8 8 N 2 4.65 0.70 108.50 113.15 A A A O4' C1' N1 U U U 9 9 9 N 2 4.70 0.70 108.50 113.20 B B B O4' C1' N1 C C C 3 3 3 N 2 4.47 0.70 108.50 112.97 B B B O4' C1' N1 U U U 7 7 7 N 2 4.75 0.70 108.50 113.25 B B B O4' C1' N1 U U U 9 9 9 N 3 4.70 0.70 108.50 113.20 A A A O4' C1' N1 C C C 3 3 3 N 3 4.73 0.70 108.50 113.23 A A A O4' C1' N1 U U U 7 7 7 N 3 4.63 0.70 108.50 113.13 A A A O4' C1' N1 U U U 8 8 8 N 3 4.43 0.70 108.50 112.93 A A A O4' C1' N1 U U U 9 9 9 N 3 4.53 0.70 108.50 113.03 B B B O4' C1' N1 C C C 3 3 3 N 3 4.36 0.70 108.50 112.86 B B B O4' C1' N1 U U U 7 7 7 N 3 4.52 0.70 108.50 113.02 B B B O4' C1' N1 U U U 9 9 9 N 4 4.50 0.70 108.50 113.00 A A A O4' C1' N1 C C C 3 3 3 N 4 4.84 0.70 108.50 113.34 A A A O4' C1' N1 U U U 7 7 7 N 4 4.88 0.70 108.50 113.38 A A A O4' C1' N1 U U U 8 8 8 N 4 4.43 0.70 108.50 112.93 A A A O4' C1' N1 U U U 9 9 9 N 4 4.58 0.70 108.50 113.08 B B B O4' C1' N1 C C C 3 3 3 N 4 4.27 0.70 108.50 112.77 B B B O4' C1' N1 U U U 7 7 7 N 4 4.38 0.70 108.50 112.88 B B B O4' C1' N1 U U U 9 9 9 N 5 4.54 0.70 108.50 113.04 A A A O4' C1' N1 C C C 3 3 3 N 5 4.36 0.70 108.50 112.86 A A A O4' C1' N1 U U U 9 9 9 N 5 4.74 0.70 108.50 113.24 B B B O4' C1' N1 C C C 3 3 3 N 5 4.34 0.70 108.50 112.84 B B B O4' C1' N1 U U U 9 9 9 N 6 4.70 0.70 108.50 113.20 A A A O4' C1' N1 C C C 3 3 3 N 6 4.35 0.70 108.50 112.85 A A A O4' C1' N1 U U U 9 9 9 N 6 4.76 0.70 108.50 113.26 B B B O4' C1' N1 C C C 3 3 3 N 6 4.42 0.70 108.50 112.92 B B B O4' C1' N1 U U U 9 9 9 N 7 4.43 0.70 108.50 112.93 A A A O4' C1' N1 C C C 3 3 3 N 7 4.65 0.70 108.50 113.15 A A A O4' C1' N1 U U U 9 9 9 N 7 5.20 0.70 108.50 113.70 B B B O4' C1' N1 C C C 3 3 3 N 7 4.53 0.70 108.50 113.03 B B B O4' C1' N1 U U U 9 9 9 N 8 4.43 0.70 108.50 112.93 A A A O4' C1' N1 C C C 3 3 3 N 8 4.65 0.70 108.50 113.15 A A A O4' C1' N1 U U U 9 9 9 N 8 5.20 0.70 108.50 113.70 B B B O4' C1' N1 C C C 3 3 3 N 8 4.53 0.70 108.50 113.03 B B B O4' C1' N1 U U U 9 9 9 N 9 4.60 0.70 108.50 113.10 A A A O4' C1' N1 C C C 3 3 3 N 9 4.40 0.70 108.50 112.90 B B B O4' C1' N1 C C C 3 3 3 N 9 4.29 0.70 108.50 112.79 B B B O4' C1' N1 U U U 9 9 9 N 10 4.67 0.70 108.50 113.17 A A A O4' C1' N1 C C C 3 3 3 N 10 4.43 0.70 108.50 112.93 B B B O4' C1' N1 C C C 3 3 3 N 10 4.43 0.70 108.50 112.93 B B B O4' C1' N1 U U U 9 9 9 N 11 4.29 0.70 108.50 112.79 A A A O4' C1' N1 C C C 3 3 3 N 11 4.54 0.70 108.50 113.04 A A A O4' C1' N1 U U U 9 9 9 N 11 4.69 0.70 108.50 113.19 B B B O4' C1' N1 C C C 3 3 3 N 11 4.28 0.70 108.50 112.78 B B B O4' C1' N1 U U U 9 9 9 N 12 4.68 0.70 108.50 113.18 A A A O4' C1' N1 C C C 3 3 3 N 12 4.58 0.70 108.50 113.08 A A A O4' C1' N1 U U U 9 9 9 N 12 4.48 0.70 108.50 112.98 B B B O4' C1' N1 C C C 3 3 3 N A-TRACT RNA DODECAMER, NMR, 12 STRUCTURES 1 N N 1 N N hydrog WATSON-CRICK A C 1 A N3 C 1 1_555 B G 12 B N1 G 12 1_555 hydrog WATSON-CRICK A C 1 A N4 C 1 1_555 B G 12 B O6 G 12 1_555 hydrog WATSON-CRICK A C 1 A O2 C 1 1_555 B G 12 B N2 G 12 1_555 hydrog WATSON-CRICK A G 2 A N1 G 2 1_555 B C 11 B N3 C 11 1_555 hydrog WATSON-CRICK A G 2 A N2 G 2 1_555 B C 11 B O2 C 11 1_555 hydrog WATSON-CRICK A G 2 A O6 G 2 1_555 B C 11 B N4 C 11 1_555 hydrog WATSON-CRICK A C 3 A N3 C 3 1_555 B G 10 B N1 G 10 1_555 hydrog WATSON-CRICK A C 3 A N4 C 3 1_555 B G 10 B O6 G 10 1_555 hydrog WATSON-CRICK A C 3 A O2 C 3 1_555 B G 10 B N2 G 10 1_555 hydrog WATSON-CRICK A A 4 A N1 A 4 1_555 B U 9 B N3 U 9 1_555 hydrog WATSON-CRICK A A 4 A N6 A 4 1_555 B U 9 B O4 U 9 1_555 hydrog WATSON-CRICK A A 5 A N1 A 5 1_555 B U 8 B N3 U 8 1_555 hydrog WATSON-CRICK A A 5 A N6 A 5 1_555 B U 8 B O4 U 8 1_555 hydrog WATSON-CRICK A A 6 A N1 A 6 1_555 B U 7 B N3 U 7 1_555 hydrog WATSON-CRICK A A 6 A N6 A 6 1_555 B U 7 B O4 U 7 1_555 hydrog WATSON-CRICK A U 7 A N3 U 7 1_555 B A 6 B N1 A 6 1_555 hydrog WATSON-CRICK A U 7 A O4 U 7 1_555 B A 6 B N6 A 6 1_555 hydrog WATSON-CRICK A U 8 A N3 U 8 1_555 B A 5 B N1 A 5 1_555 hydrog WATSON-CRICK A U 8 A O4 U 8 1_555 B A 5 B N6 A 5 1_555 hydrog WATSON-CRICK A U 9 A N3 U 9 1_555 B A 4 B N1 A 4 1_555 hydrog WATSON-CRICK A U 9 A O4 U 9 1_555 B A 4 B N6 A 4 1_555 hydrog WATSON-CRICK A G 10 A N1 G 10 1_555 B C 3 B N3 C 3 1_555 hydrog WATSON-CRICK A G 10 A N2 G 10 1_555 B C 3 B O2 C 3 1_555 hydrog WATSON-CRICK A G 10 A O6 G 10 1_555 B C 3 B N4 C 3 1_555 hydrog WATSON-CRICK A C 11 A N3 C 11 1_555 B G 2 B N1 G 2 1_555 hydrog WATSON-CRICK A C 11 A N4 C 11 1_555 B G 2 B O6 G 2 1_555 hydrog WATSON-CRICK A C 11 A O2 C 11 1_555 B G 2 B N2 G 2 1_555 hydrog WATSON-CRICK A G 12 A N1 G 12 1_555 B C 1 B N3 C 1 1_555 hydrog WATSON-CRICK A G 12 A N2 G 12 1_555 B C 1 B O2 C 1 1_555 hydrog WATSON-CRICK A G 12 A O6 G 12 1_555 B C 1 B N4 C 1 1_555 RNA RNA DUPLEX, RIBONUCLEIC ACID, RNA 1AL5 PDB 1 1AL5 1 12 1AL5 1 12 1AL5 A 1 1 12 1 12 1AL5 1 12 1AL5 B 1 1 12 1 P 1