1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Conte, M.R.
Conn, G.L.
Brown, T.
Lane, A.N.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
1
90.00
90.00
90.00
1.000
1.000
1.000
C10 H14 N5 O7 P
347.221
y
ADENOSINE-5'-MONOPHOSPHATE
RNA linking
C9 H14 N3 O8 P
323.197
y
CYTIDINE-5'-MONOPHOSPHATE
RNA linking
C10 H14 N5 O8 P
363.221
y
GUANOSINE-5'-MONOPHOSPHATE
RNA linking
C9 H13 N2 O9 P
324.181
y
URIDINE-5'-MONOPHOSPHATE
RNA linking
UK
Nucleic Acids Res.
NARHAD
0389
0305-1048
25
2627
2634
10.1093/nar/25.13.2627
9185574
Conformational properties and thermodynamics of the RNA duplex r(CGCAAAUUUGCG)2: comparison with the DNA analogue d(CGCAAATTTGCG)2.
1997
UK
Nucleic Acids Res.
NARHAD
0389
0305-1048
24
3693
Hydration of the RNA Duplex R(Cgcaaauuugcg)2 Determined by NMR
1996
10.2210/pdb1al5/pdb
pdb_00001al5
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
3812.320
RNA (5'-R(*CP*GP*CP*AP*AP*AP*UP*UP*UP*GP*CP*G)-3')
2
syn
polymer
A-TRACT RNA
no
no
CGCAAAUUUGCG
CGCAAAUUUGCG
A,B
polyribonucleotide
n
n
n
n
n
n
n
n
n
n
n
n
9.123
1
19
A
1
B
12
-1.331
A_C1:G12_B
1
-26.547
0.101
0.040
-0.078
1.243
1
19
A
2
B
11
-1.092
A_G2:C11_B
2
-22.633
-0.400
0.122
-0.149
3.003
1
19
A
3
B
10
-0.087
A_C3:G10_B
3
-24.008
0.310
-0.006
-0.111
-3.374
1
20
A
4
B
9
-2.059
A_A4:U9_B
4
-13.777
0.221
0.240
-0.012
-0.761
1
20
A
5
B
8
-5.018
A_A5:U8_B
5
-16.335
0.300
0.340
-0.016
1.294
1
20
A
6
B
7
-4.998
A_A6:U7_B
6
-23.618
0.243
0.332
-0.027
0.141
1
20
A
7
B
6
-5.196
A_U7:A6_B
7
-26.807
0.083
0.278
-0.082
2.909
1
20
A
8
B
5
-3.792
A_U8:A5_B
8
-18.841
-0.178
0.351
-0.033
11.190
1
20
A
9
B
4
-3.025
A_U9:A4_B
9
-21.191
-0.146
-0.061
-0.009
1.713
1
19
A
10
B
3
-0.255
A_G10:C3_B
10
-23.182
-0.424
0.049
-0.149
7.140
1
19
A
11
B
2
-0.332
A_C11:G2_B
11
-24.800
0.114
-0.090
-0.072
-7.946
1
19
A
12
B
1
0.364
A_G12:C1_B
12
-27.217
-0.296
-0.059
-0.109
1.572
36.399
A
A
1
2
35.839
B
B
12
11
3.113
21.065
0.059
-1.747
AA_C1G2:C11G12_BB
1
-1.733
2.948
29.804
-5.123
-0.287
2.986
35.300
A
A
2
3
3.474
B
B
11
10
3.078
2.105
0.196
-1.598
AA_G2C3:G10C11_BB
2
1.426
-2.353
35.212
-2.924
-0.128
2.120
33.067
A
A
3
4
24.729
B
B
10
9
3.157
13.673
0.093
-1.895
AA_C3A4:U9G10_BB
3
-0.762
1.379
30.170
-5.285
-0.273
3.029
31.637
A
A
4
5
0.428
B
B
9
8
3.041
0.233
0.128
-1.998
AA_A4A5:U8U9_BB
4
1.641
-3.012
31.595
-3.705
0.047
2.777
29.178
A
A
5
6
6.998
B
B
8
7
3.057
3.517
-0.201
-2.200
AA_A5A6:U7U8_BB
5
-0.135
0.268
28.969
-5.053
0.373
3.143
32.180
A
A
6
7
-0.637
B
B
7
6
3.122
-0.353
-0.126
-1.978
AA_A6U7:A6U7_BB
6
-0.077
0.139
32.178
-3.508
0.213
2.830
30.662
A
A
7
8
6.756
B
B
6
5
3.057
3.564
-0.018
-1.816
AA_U7U8:A5A6_BB
7
-1.201
2.276
30.436
-4.067
-0.180
2.852
31.414
A
A
8
9
2.224
B
B
5
4
2.913
1.204
-0.089
-1.397
AA_U8U9:A4A5_BB
8
1.410
-2.605
31.361
-2.780
0.398
1.913
35.399
A
A
9
10
32.181
B
B
4
3
3.236
18.621
0.126
-1.646
AA_U9G10:C3A4_BB
9
-2.476
4.279
30.140
-5.053
-0.520
2.966
34.056
A
A
10
11
2.272
B
B
3
2
3.024
1.330
-0.108
-1.496
AA_G10C11:G2C3_BB
10
-0.184
0.315
34.031
-2.748
0.157
1.529
37.255
A
A
11
12
39.800
B
B
2
1
3.317
23.594
-0.006
-1.734
AA_C11G12:C1G2_BB
11
-0.752
1.268
29.030
-5.348
-0.075
ndb_struct_na_base_pair
pdbx_database_status
pdbx_entity_src_syn
pdbx_nmr_software
pdbx_nmr_spectrometer
pdbx_struct_assembly
pdbx_struct_assembly_prop
pdbx_struct_oper_list
database_2
pdbx_nmr_software
pdbx_nmr_spectrometer
repository
Initial release
Version format compliance
Version format compliance
Data collection
Derived calculations
Other
Source and taxonomy
Data collection
Database references
1
0
1997-12-17
1
1
2008-03-24
1
2
2011-07-13
1
3
2018-03-14
1
4
2021-11-03
_ndb_struct_na_base_pair.opening
_pdbx_database_status.process_site
_pdbx_nmr_software.authors
_pdbx_nmr_spectrometer.field_strength
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_nmr_software.authors
_pdbx_nmr_software.classification
_pdbx_nmr_software.name
_pdbx_nmr_spectrometer.manufacturer
_pdbx_nmr_spectrometer.model
Y
BNL
1997-06-11
REL
REL
32630
synthetic construct
sample
MINIMAL RESTRAINT VIOLATIONS, LOW ENERGY, GOOD STEREOCHEMISTRY
40
12
NOESY
DQF-COSY
H-INADEQUATE
31P
7
303
K
SEE REFERENCES FOR DETAILS.
DIRECT REFINEMENT AND RMD
BIOSYM
refinement
Discover
BIOSYM
structure calculation
Discover
Lane
structure calculation
NUCFIT
400
Bruker
AM
500
Varian
UNITYPLUS
600
Varian
UNITY
C
1
n
1
C
1
A
G
2
n
2
G
2
A
C
3
n
3
C
3
A
A
4
n
4
A
4
A
A
5
n
5
A
5
A
A
6
n
6
A
6
A
U
7
n
7
U
7
A
U
8
n
8
U
8
A
U
9
n
9
U
9
A
G
10
n
10
G
10
A
C
11
n
11
C
11
A
G
12
n
12
G
12
A
C
1
n
1
C
1
B
G
2
n
2
G
2
B
C
3
n
3
C
3
B
A
4
n
4
A
4
B
A
5
n
5
A
5
B
A
6
n
6
A
6
B
U
7
n
7
U
7
B
U
8
n
8
U
8
B
U
9
n
9
U
9
B
G
10
n
10
G
10
B
C
11
n
11
C
11
B
G
12
n
12
G
12
B
author_defined_assembly
2
dimeric
1170
-3
4610
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
identity operation
0.0000000000
0.0000000000
0.0000000000
1
A
U
8
0.083
SIDE CHAIN
1
A
G
10
0.071
SIDE CHAIN
1
B
G
10
0.074
SIDE CHAIN
2
A
G
2
0.066
SIDE CHAIN
2
A
A
6
0.063
SIDE CHAIN
2
A
G
10
0.072
SIDE CHAIN
2
B
G
2
0.077
SIDE CHAIN
2
B
G
10
0.101
SIDE CHAIN
3
A
G
10
0.074
SIDE CHAIN
3
B
G
2
0.075
SIDE CHAIN
3
B
G
10
0.084
SIDE CHAIN
4
A
G
2
0.074
SIDE CHAIN
4
A
G
10
0.088
SIDE CHAIN
4
B
G
10
0.087
SIDE CHAIN
5
A
G
2
0.076
SIDE CHAIN
5
A
G
10
0.084
SIDE CHAIN
5
B
G
2
0.076
SIDE CHAIN
5
B
G
10
0.082
SIDE CHAIN
6
A
A
4
0.062
SIDE CHAIN
6
A
G
10
0.069
SIDE CHAIN
6
B
G
10
0.079
SIDE CHAIN
7
A
G
10
0.061
SIDE CHAIN
7
B
G
2
0.069
SIDE CHAIN
7
B
G
10
0.077
SIDE CHAIN
8
A
G
10
0.061
SIDE CHAIN
8
B
G
2
0.069
SIDE CHAIN
8
B
G
10
0.077
SIDE CHAIN
9
A
G
2
0.069
SIDE CHAIN
9
A
G
10
0.084
SIDE CHAIN
9
B
G
2
0.071
SIDE CHAIN
9
B
U
9
0.066
SIDE CHAIN
9
B
G
10
0.078
SIDE CHAIN
10
A
G
10
0.086
SIDE CHAIN
10
B
G
2
0.069
SIDE CHAIN
10
B
G
10
0.079
SIDE CHAIN
11
A
G
2
0.071
SIDE CHAIN
11
A
G
10
0.083
SIDE CHAIN
11
B
G
2
0.067
SIDE CHAIN
11
B
A
4
0.060
SIDE CHAIN
11
B
G
10
0.076
SIDE CHAIN
12
A
G
2
0.075
SIDE CHAIN
12
A
G
10
0.084
SIDE CHAIN
12
B
G
10
0.066
SIDE CHAIN
1
4.42
0.70
108.50
112.92
A
A
A
O4'
C1'
N1
C
C
C
3
3
3
N
1
4.91
0.70
108.50
113.41
A
A
A
O4'
C1'
N1
U
U
U
7
7
7
N
1
4.59
0.70
108.50
113.09
A
A
A
O4'
C1'
N1
U
U
U
8
8
8
N
1
4.21
0.70
108.50
112.71
A
A
A
O4'
C1'
N1
U
U
U
9
9
9
N
1
4.66
0.70
108.50
113.16
B
B
B
O4'
C1'
N1
C
C
C
3
3
3
N
1
4.34
0.70
108.50
112.84
B
B
B
O4'
C1'
N1
U
U
U
7
7
7
N
1
4.50
0.70
108.50
113.00
B
B
B
O4'
C1'
N1
U
U
U
9
9
9
N
1
4.37
0.70
108.50
112.87
B
B
B
O4'
C1'
N1
C
C
C
11
11
11
N
2
4.90
0.70
108.50
113.40
A
A
A
O4'
C1'
N1
C
C
C
3
3
3
N
2
4.73
0.70
108.50
113.23
A
A
A
O4'
C1'
N1
U
U
U
7
7
7
N
2
4.87
0.70
108.50
113.37
A
A
A
O4'
C1'
N1
U
U
U
8
8
8
N
2
4.65
0.70
108.50
113.15
A
A
A
O4'
C1'
N1
U
U
U
9
9
9
N
2
4.70
0.70
108.50
113.20
B
B
B
O4'
C1'
N1
C
C
C
3
3
3
N
2
4.47
0.70
108.50
112.97
B
B
B
O4'
C1'
N1
U
U
U
7
7
7
N
2
4.75
0.70
108.50
113.25
B
B
B
O4'
C1'
N1
U
U
U
9
9
9
N
3
4.70
0.70
108.50
113.20
A
A
A
O4'
C1'
N1
C
C
C
3
3
3
N
3
4.73
0.70
108.50
113.23
A
A
A
O4'
C1'
N1
U
U
U
7
7
7
N
3
4.63
0.70
108.50
113.13
A
A
A
O4'
C1'
N1
U
U
U
8
8
8
N
3
4.43
0.70
108.50
112.93
A
A
A
O4'
C1'
N1
U
U
U
9
9
9
N
3
4.53
0.70
108.50
113.03
B
B
B
O4'
C1'
N1
C
C
C
3
3
3
N
3
4.36
0.70
108.50
112.86
B
B
B
O4'
C1'
N1
U
U
U
7
7
7
N
3
4.52
0.70
108.50
113.02
B
B
B
O4'
C1'
N1
U
U
U
9
9
9
N
4
4.50
0.70
108.50
113.00
A
A
A
O4'
C1'
N1
C
C
C
3
3
3
N
4
4.84
0.70
108.50
113.34
A
A
A
O4'
C1'
N1
U
U
U
7
7
7
N
4
4.88
0.70
108.50
113.38
A
A
A
O4'
C1'
N1
U
U
U
8
8
8
N
4
4.43
0.70
108.50
112.93
A
A
A
O4'
C1'
N1
U
U
U
9
9
9
N
4
4.58
0.70
108.50
113.08
B
B
B
O4'
C1'
N1
C
C
C
3
3
3
N
4
4.27
0.70
108.50
112.77
B
B
B
O4'
C1'
N1
U
U
U
7
7
7
N
4
4.38
0.70
108.50
112.88
B
B
B
O4'
C1'
N1
U
U
U
9
9
9
N
5
4.54
0.70
108.50
113.04
A
A
A
O4'
C1'
N1
C
C
C
3
3
3
N
5
4.36
0.70
108.50
112.86
A
A
A
O4'
C1'
N1
U
U
U
9
9
9
N
5
4.74
0.70
108.50
113.24
B
B
B
O4'
C1'
N1
C
C
C
3
3
3
N
5
4.34
0.70
108.50
112.84
B
B
B
O4'
C1'
N1
U
U
U
9
9
9
N
6
4.70
0.70
108.50
113.20
A
A
A
O4'
C1'
N1
C
C
C
3
3
3
N
6
4.35
0.70
108.50
112.85
A
A
A
O4'
C1'
N1
U
U
U
9
9
9
N
6
4.76
0.70
108.50
113.26
B
B
B
O4'
C1'
N1
C
C
C
3
3
3
N
6
4.42
0.70
108.50
112.92
B
B
B
O4'
C1'
N1
U
U
U
9
9
9
N
7
4.43
0.70
108.50
112.93
A
A
A
O4'
C1'
N1
C
C
C
3
3
3
N
7
4.65
0.70
108.50
113.15
A
A
A
O4'
C1'
N1
U
U
U
9
9
9
N
7
5.20
0.70
108.50
113.70
B
B
B
O4'
C1'
N1
C
C
C
3
3
3
N
7
4.53
0.70
108.50
113.03
B
B
B
O4'
C1'
N1
U
U
U
9
9
9
N
8
4.43
0.70
108.50
112.93
A
A
A
O4'
C1'
N1
C
C
C
3
3
3
N
8
4.65
0.70
108.50
113.15
A
A
A
O4'
C1'
N1
U
U
U
9
9
9
N
8
5.20
0.70
108.50
113.70
B
B
B
O4'
C1'
N1
C
C
C
3
3
3
N
8
4.53
0.70
108.50
113.03
B
B
B
O4'
C1'
N1
U
U
U
9
9
9
N
9
4.60
0.70
108.50
113.10
A
A
A
O4'
C1'
N1
C
C
C
3
3
3
N
9
4.40
0.70
108.50
112.90
B
B
B
O4'
C1'
N1
C
C
C
3
3
3
N
9
4.29
0.70
108.50
112.79
B
B
B
O4'
C1'
N1
U
U
U
9
9
9
N
10
4.67
0.70
108.50
113.17
A
A
A
O4'
C1'
N1
C
C
C
3
3
3
N
10
4.43
0.70
108.50
112.93
B
B
B
O4'
C1'
N1
C
C
C
3
3
3
N
10
4.43
0.70
108.50
112.93
B
B
B
O4'
C1'
N1
U
U
U
9
9
9
N
11
4.29
0.70
108.50
112.79
A
A
A
O4'
C1'
N1
C
C
C
3
3
3
N
11
4.54
0.70
108.50
113.04
A
A
A
O4'
C1'
N1
U
U
U
9
9
9
N
11
4.69
0.70
108.50
113.19
B
B
B
O4'
C1'
N1
C
C
C
3
3
3
N
11
4.28
0.70
108.50
112.78
B
B
B
O4'
C1'
N1
U
U
U
9
9
9
N
12
4.68
0.70
108.50
113.18
A
A
A
O4'
C1'
N1
C
C
C
3
3
3
N
12
4.58
0.70
108.50
113.08
A
A
A
O4'
C1'
N1
U
U
U
9
9
9
N
12
4.48
0.70
108.50
112.98
B
B
B
O4'
C1'
N1
C
C
C
3
3
3
N
A-TRACT RNA DODECAMER, NMR, 12 STRUCTURES
1
N
N
1
N
N
hydrog
WATSON-CRICK
A
C
1
A
N3
C
1
1_555
B
G
12
B
N1
G
12
1_555
hydrog
WATSON-CRICK
A
C
1
A
N4
C
1
1_555
B
G
12
B
O6
G
12
1_555
hydrog
WATSON-CRICK
A
C
1
A
O2
C
1
1_555
B
G
12
B
N2
G
12
1_555
hydrog
WATSON-CRICK
A
G
2
A
N1
G
2
1_555
B
C
11
B
N3
C
11
1_555
hydrog
WATSON-CRICK
A
G
2
A
N2
G
2
1_555
B
C
11
B
O2
C
11
1_555
hydrog
WATSON-CRICK
A
G
2
A
O6
G
2
1_555
B
C
11
B
N4
C
11
1_555
hydrog
WATSON-CRICK
A
C
3
A
N3
C
3
1_555
B
G
10
B
N1
G
10
1_555
hydrog
WATSON-CRICK
A
C
3
A
N4
C
3
1_555
B
G
10
B
O6
G
10
1_555
hydrog
WATSON-CRICK
A
C
3
A
O2
C
3
1_555
B
G
10
B
N2
G
10
1_555
hydrog
WATSON-CRICK
A
A
4
A
N1
A
4
1_555
B
U
9
B
N3
U
9
1_555
hydrog
WATSON-CRICK
A
A
4
A
N6
A
4
1_555
B
U
9
B
O4
U
9
1_555
hydrog
WATSON-CRICK
A
A
5
A
N1
A
5
1_555
B
U
8
B
N3
U
8
1_555
hydrog
WATSON-CRICK
A
A
5
A
N6
A
5
1_555
B
U
8
B
O4
U
8
1_555
hydrog
WATSON-CRICK
A
A
6
A
N1
A
6
1_555
B
U
7
B
N3
U
7
1_555
hydrog
WATSON-CRICK
A
A
6
A
N6
A
6
1_555
B
U
7
B
O4
U
7
1_555
hydrog
WATSON-CRICK
A
U
7
A
N3
U
7
1_555
B
A
6
B
N1
A
6
1_555
hydrog
WATSON-CRICK
A
U
7
A
O4
U
7
1_555
B
A
6
B
N6
A
6
1_555
hydrog
WATSON-CRICK
A
U
8
A
N3
U
8
1_555
B
A
5
B
N1
A
5
1_555
hydrog
WATSON-CRICK
A
U
8
A
O4
U
8
1_555
B
A
5
B
N6
A
5
1_555
hydrog
WATSON-CRICK
A
U
9
A
N3
U
9
1_555
B
A
4
B
N1
A
4
1_555
hydrog
WATSON-CRICK
A
U
9
A
O4
U
9
1_555
B
A
4
B
N6
A
4
1_555
hydrog
WATSON-CRICK
A
G
10
A
N1
G
10
1_555
B
C
3
B
N3
C
3
1_555
hydrog
WATSON-CRICK
A
G
10
A
N2
G
10
1_555
B
C
3
B
O2
C
3
1_555
hydrog
WATSON-CRICK
A
G
10
A
O6
G
10
1_555
B
C
3
B
N4
C
3
1_555
hydrog
WATSON-CRICK
A
C
11
A
N3
C
11
1_555
B
G
2
B
N1
G
2
1_555
hydrog
WATSON-CRICK
A
C
11
A
N4
C
11
1_555
B
G
2
B
O6
G
2
1_555
hydrog
WATSON-CRICK
A
C
11
A
O2
C
11
1_555
B
G
2
B
N2
G
2
1_555
hydrog
WATSON-CRICK
A
G
12
A
N1
G
12
1_555
B
C
1
B
N3
C
1
1_555
hydrog
WATSON-CRICK
A
G
12
A
N2
G
12
1_555
B
C
1
B
O2
C
1
1_555
hydrog
WATSON-CRICK
A
G
12
A
O6
G
12
1_555
B
C
1
B
N4
C
1
1_555
RNA
RNA DUPLEX, RIBONUCLEIC ACID, RNA
1AL5
PDB
1
1AL5
1
12
1AL5
1
12
1AL5
A
1
1
12
1
12
1AL5
1
12
1AL5
B
1
1
12
1
P 1